Citrus Sinensis ID: 003270
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | 2.2.26 [Sep-21-2011] | |||||||
| Q9SMY8 | 990 | F-box/LRR-repeat protein | yes | no | 0.913 | 0.770 | 0.744 | 0.0 | |
| Q9C5D2 | 610 | F-box/LRR-repeat protein | no | no | 0.462 | 0.632 | 0.251 | 9e-19 | |
| A6H779 | 423 | F-box/LRR-repeat protein | yes | no | 0.308 | 0.609 | 0.270 | 3e-13 | |
| Q96IG2 | 436 | F-box/LRR-repeat protein | yes | no | 0.308 | 0.591 | 0.249 | 4e-13 | |
| Q58DG6 | 436 | F-box/LRR-repeat protein | no | no | 0.308 | 0.591 | 0.249 | 4e-13 | |
| P34284 | 466 | Uncharacterized F-box/LRR | yes | no | 0.322 | 0.577 | 0.251 | 6e-13 | |
| Q8NEE6 | 735 | F-box/LRR-repeat protein | no | no | 0.440 | 0.500 | 0.237 | 8e-13 | |
| Q8BH16 | 423 | F-box/LRR-repeat protein | no | no | 0.299 | 0.591 | 0.280 | 1e-12 | |
| Q9CZV8 | 436 | F-box/LRR-repeat protein | no | no | 0.301 | 0.577 | 0.257 | 1e-12 | |
| Q9SKK0 | 628 | EIN3-binding F-box protei | no | no | 0.468 | 0.622 | 0.246 | 2e-12 |
| >sp|Q9SMY8|FBL15_ARATH F-box/LRR-repeat protein 15 OS=Arabidopsis thaliana GN=FBL15 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 1162 bits (3005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/768 (74%), Positives = 662/768 (86%), Gaps = 5/768 (0%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWR ASAHEDFWR LNFEN +IS+EQFE++C RYPNATEVN+YGAPA++ L MKA + LR
Sbjct: 222 QWRVASAHEDFWRVLNFENIRISMEQFENMCSRYPNATEVNVYGAPAVNALAMKAATTLR 281
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE LT+G+G + ++FF AL +C+ML+S+ V+DA LGNG QEI ++HD+LR L+ITKCRV
Sbjct: 282 NLEVLTIGKGHISESFFQALGECNMLRSVTVSDAILGNGAQEIHLSHDRLRELKITKCRV 341
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
MR+SIRCPQL LSLKRSNM+QA+LNCPLL LLDIASCHKL DAAIR AA SCPQLESLD
Sbjct: 342 MRLSIRCPQLRSLSLKRSNMSQAMLNCPLLQLLDIASCHKLLDAAIRSAAISCPQLESLD 401
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
+SNCSCVSDE+LREIA +CANL ILN+SYCPNISLESV LPMLTVL+LHSCEGITSASM
Sbjct: 402 VSNCSCVSDETLREIAQACANLHILNASYCPNISLESVHLPMLTVLKLHSCEGITSASMT 461
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
I++S LEVLELDNCNLLT+VSL L RLQ+I LVHCRKF DLNL+++MLSSI VSNC A
Sbjct: 462 WIANSPALEVLELDNCNLLTTVSLHLSRLQSISLVHCRKFTDLNLQSIMLSSITVSNCPA 521
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
L RI ITSN+L++L+LQKQENLT+L LQC LQEVDL+DCESL+NSVC++FSD GGCPML
Sbjct: 522 LRRITITSNALRRLALQKQENLTTLVLQCHSLQEVDLSDCESLSNSVCKIFSDDGGCPML 581
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSL+LDNCE LT VRFC++SL SLSLVGCRA+T+LELKCP +E++CLDGCDH+E+A F P
Sbjct: 582 KSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLELKCPRIEQICLDGCDHLETAFFQP 641
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
VAL+SLNLGICPKLS L IEA +MV LELKGCGVLS+A I CPLLTSLDASFCSQL+DDC
Sbjct: 642 VALRSLNLGICPKLSVLNIEAPYMVSLELKGCGVLSEASIMCPLLTSLDASFCSQLRDDC 701
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSATT SCPLIESL+LMSC SIG DGL SL L NLT+LDLSYTFL NLEPVF+SC+QLK
Sbjct: 702 LSATTASCPLIESLVLMSCPSIGSDGLSSLNGLPNLTVLDLSYTFLMNLEPVFKSCIQLK 761
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT++SLE LYK+G+LPAL+ELDLSYGTLCQ+AI++LLA CTHLTH+SLNGC
Sbjct: 762 VLKLQACKYLTDSSLEPLYKEGALPALEELDLSYGTLCQTAIDDLLACCTHLTHLSLNGC 821
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI 723
NMHDL+WG++ F+ VY+S +N E + NRLLQNLNCVGCPNIRKV I
Sbjct: 822 VNMHDLDWGSTSVHLFDYFGVYSS-----SDNTQEPAETANRLLQNLNCVGCPNIRKVLI 876
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
PP AR +HLS+LNLSLS NLKEVD+ C NL LNLSNCCSLE LKL CP+L SLFLQSCN
Sbjct: 877 PPAARFYHLSTLNLSLSVNLKEVDLTCSNLVLLNLSNCCSLEVLKLGCPRLASLFLQSCN 936
Query: 784 IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSS 831
+DE GVE+AI+ C LETLD+RFCPKI S SM + R CPSLKR+FSS
Sbjct: 937 MDEAGVEAAISGCSSLETLDLRFCPKISSVSMSKFRTVCPSLKRVFSS 984
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C5D2|FBL4_ARATH F-box/LRR-repeat protein 4 OS=Arabidopsis thaliana GN=FBL4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 96.3 bits (238), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 119/473 (25%), Positives = 205/473 (43%), Gaps = 87/473 (18%)
Query: 419 GCPMLKSLVLDNCEGLTVVRFCS-----TSLVSLSLVGC----RAITALELKCPILEKVC 469
G P +++L L C ++ V CS TSL SL L GC + + A+ C LE++
Sbjct: 138 GFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCYVGDQGLAAVGKFCKQLEELN 197
Query: 470 LDGCDHIESASFVPV------ALQSLNLGICPKLSTLGIEAL--HMVVLELKGCGVLSDA 521
L C+ + + + +L+S+ + K++ L +EA+ H +LE+ L
Sbjct: 198 LRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVGSHCKLLEVL---YLDSE 254
Query: 522 YINCPLLTSLDASFCSQLKD---DCLSATTTS-------CPLIESLILMSCQSIGPDGLY 571
YI+ L ++ A C +LK+ C+S T + C +E L L S Q G+
Sbjct: 255 YIHDKGLIAV-AQGCHRLKNLKLQCVSVTDVAFAAVGELCTSLERLALYSFQHFTDKGMR 313
Query: 572 SL----RSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSL 627
++ + L++LT+ D + LE + C +L+ +++ C + +E++ K S
Sbjct: 314 AIGKGSKKLKDLTLSDCYFVSCKGLEAIAHGCKELERVEINGCHNIGTRGIEAIGK--SC 371
Query: 628 PALQELDLSYGTLCQ----SAIEELLAYCTHLTHVSLNGCGNMHDLNWG--ASGCQPFES 681
P L+EL L Y CQ SA++E+ C L + L C + D+ A GC+ +
Sbjct: 372 PRLKELALLY---CQRIGNSALQEIGKGCKSLEILHLVDCSGIGDIAMCSIAKGCRNLKK 428
Query: 682 --------------PSVYNSCGIFPHENIHESIDQPNRLL---------QNLNCVGCPNI 718
S+ C ++ N+ L Q LN GC I
Sbjct: 429 LHIRRCYEIGNKGIISIGKHCKSLTELSLRFCDKVGNKALIAIGKGCSLQQLNVSGCNQI 488
Query: 719 RKVFIPPQAR-CFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSL 777
I AR C L+ L++S+ N+ ++ +A L CP L L
Sbjct: 489 SDAGITAIARGCPQLTHLDISVLQNIGDMPLA----------------ELGEGCPMLKDL 532
Query: 778 FLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIF 829
L C+ I + G+ + +C +LET + +CP I S + + ++CP +K++
Sbjct: 533 VLSHCHHITDNGLNHLVQKCKLLETCHMVYCPGITSAGVATVVSSCPHIKKVL 585
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Arabidopsis thaliana (taxid: 3702) |
| >sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.8 bits (190), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 134/303 (44%), Gaps = 45/303 (14%)
Query: 60 YCIWQWRAASAHEDFWRCLNFENRKISVEQFEDVCQR--YPNATEVNIYGAPAIHLLVMK 117
Y + ++ + H D C++ N S++ + C+ Y N + + + LV
Sbjct: 123 YSLSRFCSKLKHLDLTSCVSITNS--SLKGISEGCRHLEYLNLSWCDQITKDGVEALVRG 180
Query: 118 AVSLLRNLEALTL-GRGQLGD-AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 175
R L AL L G QL D A H C L SLN+ +
Sbjct: 181 C----RGLRALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCS----------------- 219
Query: 176 LEITKCRVMRVSIRCPQLEHL------SLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAI 229
+T V+++ CP+L+ L SL +++ LNCP L +L+ A C L+DA
Sbjct: 220 -RVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARCSHLTDAGF 278
Query: 230 RLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV-------- 281
L A +C LE +D+ C ++D +L ++++ C L+ L+ S+C I+ + +
Sbjct: 279 TLLARNCHDLEKMDLEECILITDRTLTQLSIHCPKLQALSLSHCELITDDGILHLSNSPC 338
Query: 282 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 341
L VL+L +C IT ++ + H LE LEL +C +T ++ R Q L H R
Sbjct: 339 GHERLRVLELDNCLLITDVALEHLEHCRGLERLELYDCQQVTRAGIKRMRAQ---LPHVR 395
Query: 342 KFA 344
A
Sbjct: 396 VHA 398
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Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Bos taurus (taxid: 9913) |
| >sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 51/309 (16%)
Query: 135 LGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINH--DQLRRLEITKC-RVMRVSIR- 189
+GD A +C ++ LN+N T ++ +LR L++ C + +S++
Sbjct: 104 VGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKA 163
Query: 190 ----CPQLEHLSLK------RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 239
CP LE L++ + + V C L L + C +L D A++ CP+L
Sbjct: 164 LSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPEL 223
Query: 240 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRL-----PMLTVLQLHSC 294
+L++ C ++DE L I C L+ L +S C NI+ + P L +L++ C
Sbjct: 224 VTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARC 283
Query: 295 EGITSASMAAISHS-YMLEVLELDNC-----NLLTSVSLELPRLQNIRLVHCRKFADLNL 348
+T ++ + + LE ++L+ C + L +S+ PRLQ + L HC D +
Sbjct: 284 SQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGI 343
Query: 349 RAM--------MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDL 400
R + L I + NC IT SL+ L C L+ ++L
Sbjct: 344 RHLGNGACAHDQLEVIELDNCPL-----ITDASLEHLK------------SCHSLERIEL 386
Query: 401 TDCESLTNS 409
DC+ +T +
Sbjct: 387 YDCQQITRA 395
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Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Homo sapiens (taxid: 9606) |
| >sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/309 (24%), Positives = 134/309 (43%), Gaps = 51/309 (16%)
Query: 135 LGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINH--DQLRRLEITKC-RVMRVSIR- 189
+GD A +C ++ LN+N T ++ +LR L++ C + +S++
Sbjct: 104 VGDNALRTFAQNCRNIEVLNLNGCTKTTDATCTSLSKFCSKLRHLDLASCTSITNMSLKA 163
Query: 190 ----CPQLEHLSLK------RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 239
CP LE L++ + + V C L L + C +L D A++ CP+L
Sbjct: 164 LSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPEL 223
Query: 240 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRL-----PMLTVLQLHSC 294
+L++ C ++DE L I C L+ L +S C NI+ + P L +L++ C
Sbjct: 224 VTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRILEVARC 283
Query: 295 EGITSASMAAISHS-YMLEVLELDNC-----NLLTSVSLELPRLQNIRLVHCRKFADLNL 348
+T ++ + + LE ++L+ C + L +S+ PRLQ + L HC D +
Sbjct: 284 SQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELITDDGI 343
Query: 349 RAM--------MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDL 400
R + L I + NC IT SL+ L C L+ ++L
Sbjct: 344 RHLGNGACAHDQLEVIELDNCPL-----ITDASLEHLK------------SCHSLERIEL 386
Query: 401 TDCESLTNS 409
DC+ +T +
Sbjct: 387 YDCQQITRA 395
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Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission. Bos taurus (taxid: 9913) |
| >sp|P34284|YKK7_CAEEL Uncharacterized F-box/LRR-repeat protein C02F5.7 OS=Caenorhabditis elegans GN=C02F5.7 PE=4 SV=3 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 82/326 (25%), Positives = 139/326 (42%), Gaps = 57/326 (17%)
Query: 189 RCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 248
RCP LEHLSL R C +++DA+ C +L L++ NCS
Sbjct: 147 RCPNLEHLSLYR--------------------CKRVTDASCENLGRYCHKLNYLNLENCS 186
Query: 249 CVSDESLREIALSCANLRILNSSYCPNISLESVRLPM-----LTVLQLHSCEGITSASMA 303
++D +++ I C NL LN S+C I V++ + L L L CEG+T
Sbjct: 187 SITDRAMKYIGDGCPNLSYLNISWCDAIQDRGVQIILSNCKSLDTLILRGCEGLTENVFG 246
Query: 304 AI-SHSYMLEVLELDNCNLLTSVSLE-----LPRLQNIRLVHCRKFADLNLRAMMLSSIM 357
++ +H ++ L L C LT ++++ L+ + + +C + +D +L ++
Sbjct: 247 SVEAHMGAIKKLNLLQCFQLTDITVQNIANGATALEYLCMSNCNQISDRSLVSL------ 300
Query: 358 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 417
H N+ L +L LA C+ L+ +D+ DC +++ + S
Sbjct: 301 -----GQHSHNLKVLELSGCTLLGDNGFIPLARGCRQLERLDMEDCSLISDHT--INSLA 353
Query: 418 GGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-KCPILEKVCLDGCDHI 476
C L+ L L +CE +T S+ +L+ + LEL CP L L H
Sbjct: 354 NNCTALRELSLSHCELIT-----DESIQNLASKHRETLNVLELDNCPQLTDSTLSHLRHC 408
Query: 477 ESASFVPVALQSLNLGICPKLSTLGI 502
+ AL+ ++L C +S I
Sbjct: 409 K-------ALKRIDLYDCQNVSKEAI 427
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Caenorhabditis elegans (taxid: 6239) |
| >sp|Q8NEE6|FXL13_HUMAN F-box/LRR-repeat protein 13 OS=Homo sapiens GN=FBXL13 PE=2 SV=3 | Back alignment and function description |
|---|
Score = 76.6 bits (187), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 103/434 (23%), Positives = 185/434 (42%), Gaps = 66/434 (15%)
Query: 253 ESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLE 312
++ R ++ C NL+ LN S CP + ES+R H EG +
Sbjct: 236 KTFRSVS-HCRNLQELNVSDCPTFTDESMR---------HISEGCPG-----------VL 274
Query: 313 VLELDNCNLLTSVSLELPR----LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRIN 368
L L N + LPR LQN+ L +CR+F D L+ + L + C L ++
Sbjct: 275 CLNLSNTTITNRTMRLLPRHFHNLQNLSLAYCRRFTDKGLQYLNLGN----GCHKLIYLD 330
Query: 369 ITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 428
++ + ++S+Q +A C + + + D +LT++ + + C + SLV
Sbjct: 331 LSGCT--QISVQ---GFRYIANSCTGIMHLTINDMPTLTDNCVKALVEK--CSRITSLVF 383
Query: 429 DNCEGLTVVRFCSTS---LVSLSLVGCRAITALELK-----CPILEKVCLDGCDHIESAS 480
++ F + S L + G + +T K P L + + C I +S
Sbjct: 384 TGAPHISDCTFRALSACKLRKIRFEGNKRVTDASFKFIDKNYPNLSHIYMADCKGITDSS 443
Query: 481 FVPVA----LQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 536
++ L LNL C ++ +G++ L G + + L+ S C
Sbjct: 444 LRSLSPLKQLTVLNLANCVRIGDMGLKQF------LDGPASMR--------IRELNLSNC 489
Query: 537 SQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE-PV 595
+L D + + CP + L L +C+ + G+ + ++ +L +DLS T ++N V
Sbjct: 490 VRLSDASVMKLSERCPNLNYLSLRNCEHLTAQGIGYIVNIFSLVSIDLSGTDISNEGLNV 549
Query: 596 FESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY-GTLCQSAIEELLAYCTH 654
+LK L + C +T+ +++ K + L+ LD+SY L I+ L YC +
Sbjct: 550 LSRHKKLKELSVSECYRITDDGIQAFCKSSLI--LEHLDVSYCSQLSDMIIKALAIYCIN 607
Query: 655 LTHVSLNGCGNMHD 668
LT +S+ GC + D
Sbjct: 608 LTSLSIAGCPKITD 621
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Homo sapiens (taxid: 9606) |
| >sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 82/292 (28%), Positives = 132/292 (45%), Gaps = 42/292 (14%)
Query: 60 YCIWQWRAASAHEDFWRCLNFENRKISVEQFEDVCQ--RYPNATEVNIYGAPAIHLLVMK 117
Y + ++ + H D C++ N S++ + C+ Y N + + I LV
Sbjct: 123 YSLSRFCSKLKHLDLTSCVSVTNS--SLKGISEGCRNLEYLNLSWCDQITKEGIEALVRG 180
Query: 118 AVSLLRNLEALTL-GRGQLGD-AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 175
R L+AL L G QL D A H C L SLN+ +
Sbjct: 181 C----RGLKALLLRGCTQLEDEALKHIQNHCHELVSLNLQSCS----------------- 219
Query: 176 LEITKCRVMRVSIRCPQLEHLSLKR-SNMAQAVL-----NCPLLHLLDIASCHKLSDAAI 229
IT V+++ C +L+ L L SN+ A L NCP L +L+ A C L+DA
Sbjct: 220 -RITDDGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQVLEAARCSHLTDAGF 278
Query: 230 RLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV-------- 281
L A +C +LE +D+ C ++D +L ++++ C L+ L+ S+C I+ E +
Sbjct: 279 TLLARNCHELEKMDLEECVLITDSTLVQLSIHCPKLQALSLSHCELITDEGILHLSSSTC 338
Query: 282 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQ 333
L VL+L +C +T AS+ + + LE LEL +C +T ++ R Q
Sbjct: 339 GHERLRVLELDNCLLVTDASLEHLENCRGLERLELYDCQQVTRAGIKRMRAQ 390
|
Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Mus musculus (taxid: 10090) |
| >sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 81/314 (25%), Positives = 134/314 (42%), Gaps = 62/314 (19%)
Query: 123 RNLEALTL-GRGQLGDAFFHALAD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK 180
RN+E L+L G + DA +L+ CS L+ L++ T IT
Sbjct: 117 RNIEVLSLNGCTKTTDATCTSLSKFCSKLRHLDLASCT------------------SITN 158
Query: 181 CRVMRVSIRCPQLEHLSLK------RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAAT 234
+ +S CP LE L++ + + V C L L + C +L D A++
Sbjct: 159 MSLKALSEGCPLLEQLNISWCDQVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGA 218
Query: 235 SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRL-----PMLTVL 289
CP+L +L++ C ++DE L I C L+ L +S C NI+ + P L +L
Sbjct: 219 HCPELVTLNLQTCLQITDEGLITICRGCHKLQSLCASGCSNITDAILNALGQNCPRLRIL 278
Query: 290 QLHSCEGITSASMAAISHS-YMLEVLELDNC-----NLLTSVSLELPRLQNIRLVHCRKF 343
++ C +T ++ + + LE ++L+ C + L +S+ PRLQ + L HC
Sbjct: 279 EVARCSQLTDVGFTTLARNCHELEKMDLEECVQITDSTLIQLSIHCPRLQVLSLSHCELI 338
Query: 344 ADLNLRAM--------MLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCL 395
D +R + L I + NC IT SL+ L C L
Sbjct: 339 TDDGIRHLGNGACAHDQLEVIELDNCPL-----ITDASLEHLK------------SCHSL 381
Query: 396 QEVDLTDCESLTNS 409
+ ++L DC+ +T +
Sbjct: 382 ERIELYDCQQITRA 395
|
Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity. Mus musculus (taxid: 10090) |
| >sp|Q9SKK0|EBF1_ARATH EIN3-binding F-box protein 1 OS=Arabidopsis thaliana GN=EBF1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 75.5 bits (184), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 121/491 (24%), Positives = 191/491 (38%), Gaps = 100/491 (20%)
Query: 190 CPQLEHLSL------KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
CP L LSL + + + C L L++ C ++D + A SCP L L
Sbjct: 176 CPSLGSLSLWNVSTITDNGLLEIAEGCAQLEKLELNRCSTITDKGLVAIAKSCPNLTELT 235
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNI--------------SLESVRLPMLTVL 289
+ CS + DE L IA SC+ L+ ++ CP + SL ++L ML V
Sbjct: 236 LEACSRIGDEGLLAIARSCSKLKSVSIKNCPLVRDQGIASLLSNTTCSLAKLKLQMLNVT 295
Query: 290 QL------HSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKF 343
+ H IT +A +SH + N + L +L ++ + C+
Sbjct: 296 DVSLAVVGHYGLSITDLVLAGLSHVSEKGFWVMGN-------GVGLQKLNSLTITACQGV 348
Query: 344 ADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 403
D+ L ++ C + + I+ K L L S A L+ + L +C
Sbjct: 349 TDMGLESVG------KGCPNMKKAIIS-----KSPLLSDNGLVSFAKASLSLESLQLEEC 397
Query: 404 ESLTNSVCEVFSDGGGC-PMLKSLVLDNC-------EGLTVVRFCSTSLVSLSLVGCRA- 454
+T F C LK+ L NC GL CS +L SLS+ C
Sbjct: 398 HRVTQ--FGFFGSLLNCGEKLKAFSLVNCLSIRDLTTGLPASSHCS-ALRSLSIRNCPGF 454
Query: 455 ----ITALELKCPILEKVCLDGCDHIESASF---VPVALQSLNLGICPKLSTLGIEAL-- 505
+ A+ CP LE + L G I + F + +L +N C L+ I A+
Sbjct: 455 GDANLAAIGKLCPQLEDIDLCGLKGITESGFLHLIQSSLVKINFSGCSNLTDRVISAITA 514
Query: 506 ----HMVVLELKGCGVLSDAYI-----NCPLLTSLDASFCSQLKDDCLSATTTSCPLIES 556
+ VL + GC ++DA + NC +L+ LD S C+ + D + A +S L
Sbjct: 515 RNGWTLEVLNIDGCSNITDASLVSIAANCQILSDLDISKCA-ISDSGIQALASSDKL--- 570
Query: 557 LILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNT 616
LQ L++ S +L + L L LQ C+ ++N+
Sbjct: 571 ------------------KLQILSVAGCSMVTDKSLPAIVGLGSTLLGLNLQQCRSISNS 612
Query: 617 S----LESLYK 623
+ +E LYK
Sbjct: 613 TVDFLVERLYK 623
|
Component of SCF(EBF1) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (probably including EIN3 and EIL1). Regulator of the ethylene signaling cascade by modulating the stability of EIN3 and EIL1 proteins. Confers insensitivity to ethylene. Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | ||||||
| 343887327 | 1068 | F-box / LRR-repeat protein [Citrus unshi | 0.852 | 0.666 | 0.930 | 0.0 | |
| 255550167 | 997 | conserved hypothetical protein [Ricinus | 0.924 | 0.774 | 0.848 | 0.0 | |
| 224141687 | 957 | predicted protein [Populus trichocarpa] | 0.920 | 0.803 | 0.829 | 0.0 | |
| 356552386 | 975 | PREDICTED: F-box/LRR-repeat protein 15-l | 0.922 | 0.789 | 0.799 | 0.0 | |
| 356564031 | 982 | PREDICTED: F-box/LRR-repeat protein 15-l | 0.917 | 0.780 | 0.788 | 0.0 | |
| 296081717 | 957 | unnamed protein product [Vitis vinifera] | 0.920 | 0.803 | 0.803 | 0.0 | |
| 356514729 | 893 | PREDICTED: F-box/LRR-repeat protein 15-l | 0.918 | 0.858 | 0.773 | 0.0 | |
| 297798620 | 990 | predicted protein [Arabidopsis lyrata su | 0.913 | 0.770 | 0.747 | 0.0 | |
| 334187119 | 990 | F-box/LRR-repeat protein 15 [Arabidopsis | 0.913 | 0.770 | 0.744 | 0.0 | |
| 357437317 | 1026 | F-box/LRR-repeat protein [Medicago trunc | 0.923 | 0.751 | 0.727 | 0.0 |
| >gi|343887327|dbj|BAK61873.1| F-box / LRR-repeat protein [Citrus unshiu] | Back alignment and taxonomy information |
|---|
Score = 1375 bits (3560), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/764 (93%), Positives = 712/764 (93%), Gaps = 52/764 (6%)
Query: 91 EDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLK 150
EDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLK
Sbjct: 338 EDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLK 397
Query: 151 SLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC 210
SLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC
Sbjct: 398 SLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC 457
Query: 211 PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNS 270
PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNS
Sbjct: 458 PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNS 517
Query: 271 SYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELP 330
SYCPNISLE VLELDNCNLLTSVSLELP
Sbjct: 518 SYCPNISLE---------------------------------VLELDNCNLLTSVSLELP 544
Query: 331 RLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLAL 390
RLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLAL
Sbjct: 545 RLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLAL 604
Query: 391 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE------------------ 432
QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE
Sbjct: 605 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCECEEPCSYDGKHCYIKNEK 664
Query: 433 -GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL 491
GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL
Sbjct: 665 GGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL 724
Query: 492 GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSC 551
GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSC
Sbjct: 725 GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSC 784
Query: 552 PLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACK 611
PLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACK
Sbjct: 785 PLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACK 844
Query: 612 YLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNW 671
YLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNW
Sbjct: 845 YLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNW 904
Query: 672 GASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFH 731
G+SGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFH
Sbjct: 905 GSSGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFH 964
Query: 732 LSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVES 791
LSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVES
Sbjct: 965 LSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVES 1024
Query: 792 AITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS 835
AITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS
Sbjct: 1025 AITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS 1068
|
Source: Citrus unshiu Species: Citrus unshiu Genus: Citrus Family: Rutaceae Order: Sapindales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255550167|ref|XP_002516134.1| conserved hypothetical protein [Ricinus communis] gi|223544620|gb|EEF46136.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1288 bits (3333), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 655/772 (84%), Positives = 704/772 (91%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWRAASAHEDFWRCLNFENR IS+EQF+D+C+RYPNATEVNIY AP IHLLVMKA+S LR
Sbjct: 226 QWRAASAHEDFWRCLNFENRNISIEQFDDMCRRYPNATEVNIYSAPNIHLLVMKALSSLR 285
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE LTLGRGQLGD FFHALADCSMLKSL VNDATLGNGV EIPINHD+LR L++ KCRV
Sbjct: 286 NLEVLTLGRGQLGDPFFHALADCSMLKSLYVNDATLGNGVHEIPINHDRLRHLQLIKCRV 345
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
+R+S+RCPQLE LSLKRSNMAQAVLNCPLL LLDI SCHKLSDAAIR AA SCPQLESLD
Sbjct: 346 VRISVRCPQLETLSLKRSNMAQAVLNCPLLRLLDIGSCHKLSDAAIRSAAISCPQLESLD 405
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
MSNCSCVSDE+LREIA +C NL ILN+SYCPNISLESVRLPMLTVL+LHSCEGITSASMA
Sbjct: 406 MSNCSCVSDETLREIAATCVNLHILNASYCPNISLESVRLPMLTVLKLHSCEGITSASMA 465
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
AI+HS MLEVLELDNC+LLTSVSL+LP LQNIRLVHCRKFADLNLR+ LSSIMVSNC A
Sbjct: 466 AIAHSSMLEVLELDNCSLLTSVSLDLPSLQNIRLVHCRKFADLNLRSTKLSSIMVSNCPA 525
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
LHRINI SNSLQKL+LQKQENLT+LALQCQ LQEVDLTDCESLTNS+CEVFSDGGGCPML
Sbjct: 526 LHRINIMSNSLQKLALQKQENLTALALQCQFLQEVDLTDCESLTNSICEVFSDGGGCPML 585
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSLVLDNCE LT V+FCSTSLVSLSLVGCRAITALEL CP LEKVCLDGCDH+E ASF P
Sbjct: 586 KSLVLDNCESLTAVQFCSTSLVSLSLVGCRAITALELTCPCLEKVCLDGCDHLERASFSP 645
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
VAL+SLNLGICPKL+ L IEA +M++LELKGCGVLS+A INCPLLTSLDASFCSQLKDDC
Sbjct: 646 VALRSLNLGICPKLNILNIEAPYMLLLELKGCGVLSEASINCPLLTSLDASFCSQLKDDC 705
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSATT SCPLIESLILMSC S+G DGLYSLR L NLT+LDLSYTFL NL+PVFESCLQLK
Sbjct: 706 LSATTASCPLIESLILMSCPSVGSDGLYSLRWLPNLTVLDLSYTFLMNLQPVFESCLQLK 765
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT+TSLE LYK+G+LP LQ LDLSYGTLCQSAIEELLAYCTHLTH+SLNGC
Sbjct: 766 VLKLQACKYLTDTSLEPLYKEGALPVLQVLDLSYGTLCQSAIEELLAYCTHLTHLSLNGC 825
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI 723
NMHDLNWG SG Q E PSV NS + ENI E I+Q NRLLQNLNCVGCPNIRKV I
Sbjct: 826 VNMHDLNWGCSGGQHSELPSVCNSSALLCDENIDEPIEQANRLLQNLNCVGCPNIRKVLI 885
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
PP ARCFHLSSLNLSLSANLKEVD+ACF+LC LNLSNCCSLE LKL+CP+LTSLFLQSCN
Sbjct: 886 PPMARCFHLSSLNLSLSANLKEVDIACFSLCILNLSNCCSLEILKLECPRLTSLFLQSCN 945
Query: 784 IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS 835
IDEE VE+AI++C MLETLDVRFCPKI S SMGRLRA+CPSLKR+FSSL+ S
Sbjct: 946 IDEEDVEAAISRCSMLETLDVRFCPKIYSISMGRLRASCPSLKRVFSSLSPS 997
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224141687|ref|XP_002324196.1| predicted protein [Populus trichocarpa] gi|222865630|gb|EEF02761.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1258 bits (3255), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 638/769 (82%), Positives = 697/769 (90%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QW+AASAHEDFWRCL+FENR ISVEQFED+ +RYPNATEVNIYGAP+I LLVMKAVS LR
Sbjct: 189 QWQAASAHEDFWRCLDFENRNISVEQFEDMSRRYPNATEVNIYGAPSIQLLVMKAVSSLR 248
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE+LTLG+GQLGD FFHAL DCSMLK+LNVNDATLGNG+QEIPINHD+L L++TKCRV
Sbjct: 249 NLESLTLGKGQLGDPFFHALGDCSMLKNLNVNDATLGNGIQEIPINHDRLCHLQLTKCRV 308
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
MR+S+RCPQLE LSLKRSNMAQAVLNCPLL LLDI SCHKL+DAAIR AA SCPQL SLD
Sbjct: 309 MRISVRCPQLETLSLKRSNMAQAVLNCPLLRLLDIGSCHKLTDAAIRSAAISCPQLASLD 368
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
MSNCSCVSDE+LREI+ +CANL LN+SYCPNISLESVRLPMLT+L+LHSCEGITSASM+
Sbjct: 369 MSNCSCVSDETLREISHTCANLHTLNASYCPNISLESVRLPMLTILKLHSCEGITSASMS 428
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
AI+HS +LEVLELDNC+LLTSVSL+LPRLQNIRLVHCRKFADLNLR++MLSSIMVSNC A
Sbjct: 429 AIAHSSLLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLRSIMLSSIMVSNCPA 488
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
LHRINITSNSLQKL+LQKQENL +LALQCQ LQE+DLTDCESLTNS+C+VFSDGGGCP L
Sbjct: 489 LHRINITSNSLQKLALQKQENLATLALQCQSLQEMDLTDCESLTNSICDVFSDGGGCPKL 548
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSLVLDNCE LT VRF STSLVSLSLVGC AITAL+L CP LE VCLDGCDH+E ASF P
Sbjct: 549 KSLVLDNCESLTAVRFRSTSLVSLSLVGCHAITALDLACPSLELVCLDGCDHLEKASFCP 608
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
VAL+ LNLGICPKL+ L IEA MV LELKGCGVLS+A INCPLLTSLDASFCSQLKD C
Sbjct: 609 VALRLLNLGICPKLNMLSIEAPFMVSLELKGCGVLSEATINCPLLTSLDASFCSQLKDGC 668
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSATT SCPLI SLILMSC S+G DGL+SL L +LT+LDLSYTFL NLEPVF+SCLQLK
Sbjct: 669 LSATTASCPLIGSLILMSCPSVGSDGLFSLGRLPHLTLLDLSYTFLMNLEPVFDSCLQLK 728
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT+TSLE LYK G+LPALQELDLSYGTLCQSAIEELLA C HLTH+SLNGC
Sbjct: 729 VLKLQACKYLTDTSLEPLYKDGALPALQELDLSYGTLCQSAIEELLACCRHLTHLSLNGC 788
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI 723
NMHDLNWG SG Q +E PS ++S +F EN+ S +QPNRLLQNLNCVGCPNIRKV I
Sbjct: 789 ANMHDLNWGCSGGQIYEFPSKFSSAALFSDENLPVSTEQPNRLLQNLNCVGCPNIRKVAI 848
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
PP ARC LSSLNLSLS+NLKEVDV CFNLC+LNLSNCCSLE LKL+CP+LTSLFLQSCN
Sbjct: 849 PPVARCLLLSSLNLSLSSNLKEVDVVCFNLCYLNLSNCCSLEILKLECPRLTSLFLQSCN 908
Query: 784 IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSL 832
IDEE VE+AI+QCGMLETLDVRFCPKICS SMG+LRAACPSLKRIFSSL
Sbjct: 909 IDEETVEAAISQCGMLETLDVRFCPKICSISMGQLRAACPSLKRIFSSL 957
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552386|ref|XP_003544549.1| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1216 bits (3146), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 617/772 (79%), Positives = 678/772 (87%), Gaps = 2/772 (0%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWR ASAHEDFW+ LNFE+R ISVEQFED+C+RYPNAT V+I G+ AI+LLVMKA+ LR
Sbjct: 206 QWRGASAHEDFWKSLNFEDRNISVEQFEDMCRRYPNATAVSISGS-AIYLLVMKAICSLR 264
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE LTLGRGQ+ D FFHALADCSML+ LN+ND+TLGNG+QEI INHD+L L++TKCRV
Sbjct: 265 NLEVLTLGRGQIADTFFHALADCSMLRRLNINDSTLGNGIQEITINHDRLCHLQLTKCRV 324
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
MR+++RCPQLE +SLKRSNMAQ VLNCPLLH LDI SCHKL DAAIR AATSCPQL SLD
Sbjct: 325 MRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLD 384
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
MSNCSCVSDE+LREIALSCANL L++SYC NISLESVRLPMLTVL+LHSCEGITSASMA
Sbjct: 385 MSNCSCVSDETLREIALSCANLSFLDASYCSNISLESVRLPMLTVLKLHSCEGITSASMA 444
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
AI+HSYMLEVLELDNC+LLTSVSL+LPRLQ IRLVHCRKFADLNLR MMLSSI+VSNC A
Sbjct: 445 AIAHSYMLEVLELDNCSLLTSVSLDLPRLQTIRLVHCRKFADLNLRTMMLSSILVSNCPA 504
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
LHRINITSNSLQKL+LQKQ++LT+LALQCQ LQEVDL++CESLTNS+C+VFSDGGGCPML
Sbjct: 505 LHRINITSNSLQKLALQKQDSLTTLALQCQSLQEVDLSECESLTNSICDVFSDGGGCPML 564
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSLVLDNCE L VRF ST+LVSLSL GCRAITALEL CP LEKV LDGCDH+E ASF P
Sbjct: 565 KSLVLDNCESLESVRFISTTLVSLSLGGCRAITALELTCPNLEKVILDGCDHLEKASFCP 624
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
V L+SLNLGICPKL+ L IEA+ MV LELKGCGVLS+A +NCPLLTSLDASFCSQL D+C
Sbjct: 625 VGLRSLNLGICPKLNILSIEAMFMVSLELKGCGVLSEASLNCPLLTSLDASFCSQLTDEC 684
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSATT SCPLIESLILMSC SIG DGL SLR L NLT+LDLSYTFL NL+PVFESC QLK
Sbjct: 685 LSATTASCPLIESLILMSCPSIGLDGLCSLRRLPNLTLLDLSYTFLVNLQPVFESCSQLK 744
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT++SLE LY KG+LPALQELDLSYGTLCQSAIEELL+ C HLT VSLNGC
Sbjct: 745 VLKLQACKYLTDSSLEPLY-KGALPALQELDLSYGTLCQSAIEELLSCCRHLTRVSLNGC 803
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI 723
NMHDLNWG S E P V HEN+H+ +QP RLLQNLNCVGCPNIRKVFI
Sbjct: 804 ANMHDLNWGCSRGHIAELPGVNVLSIATSHENVHKLSEQPTRLLQNLNCVGCPNIRKVFI 863
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
P A C L LNLSLSANLKEVDVAC NL +LNLSNC SLE LKL+CP+LTSLFLQSCN
Sbjct: 864 PSTAHCSRLLFLNLSLSANLKEVDVACLNLSWLNLSNCSSLEVLKLECPRLTSLFLQSCN 923
Query: 784 IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS 835
IDEE VE+AI++C MLETLDVRFCPKICS SMGRLRAAC SLKRIFSSL++S
Sbjct: 924 IDEEAVEAAISKCTMLETLDVRFCPKICSMSMGRLRAACSSLKRIFSSLSSS 975
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564031|ref|XP_003550260.1| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1197 bits (3098), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 612/776 (78%), Positives = 674/776 (86%), Gaps = 10/776 (1%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWR ASAHEDFW+ LNFE+R ISVEQFED+C RYPNAT V++ G+ AI+LLVMKA+ LR
Sbjct: 213 QWRGASAHEDFWKSLNFEDRNISVEQFEDMCSRYPNATAVSLSGS-AIYLLVMKAICSLR 271
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE LTLGRGQ+ D FFHALADCSML+ LN+ND+ LGNG+QEI INHD+L L++TKCRV
Sbjct: 272 NLEFLTLGRGQIADTFFHALADCSMLRRLNINDSILGNGIQEITINHDRLCHLQLTKCRV 331
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
MR+++RCPQLE +SLKRSNMAQ VLNCPLLH LDI SCHKL DAAIR AATSCPQL SLD
Sbjct: 332 MRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLD 391
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
MSNCSCVSDE+LREIALSCANL L++SYC NISLESVRLPMLTVL+LHSCEGITSASMA
Sbjct: 392 MSNCSCVSDETLREIALSCANLSFLDASYCSNISLESVRLPMLTVLKLHSCEGITSASMA 451
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
AI+HSYMLEVLELDNC+LLTSVSL+LPRLQ IRLVHCRKFADLN+R MMLSSI+VSNC A
Sbjct: 452 AIAHSYMLEVLELDNCSLLTSVSLDLPRLQTIRLVHCRKFADLNMRTMMLSSILVSNCPA 511
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
LHRINITSNSLQKL+LQKQ++LT LALQCQ LQEVDL++CESLTNS+C+VFSDGGGCPML
Sbjct: 512 LHRINITSNSLQKLALQKQDSLTMLALQCQSLQEVDLSECESLTNSICDVFSDGGGCPML 571
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSLVLDNCE LT VRF STSLVSLSL GCRAIT+LEL CP LEKV LDGCDH+E ASF P
Sbjct: 572 KSLVLDNCESLTSVRFISTSLVSLSLGGCRAITSLELTCPNLEKVILDGCDHLERASFCP 631
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
V L+SLNLGICPKL+ L IEA+ MV LELKGCGVLS+A +NCPLLTSLDASFCSQL D+C
Sbjct: 632 VGLRSLNLGICPKLNILSIEAMFMVSLELKGCGVLSEASLNCPLLTSLDASFCSQLTDEC 691
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSATT SCPLIESLILMSC SIG DGL SLR L NLT+LDLSYTFL NL+P+FESC QLK
Sbjct: 692 LSATTASCPLIESLILMSCPSIGLDGLCSLRWLPNLTLLDLSYTFLVNLQPIFESCSQLK 751
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT++SLE LY KG+LP LQELDLSYGTLCQSAIEELL+ CTHLT VSLNGC
Sbjct: 752 VLKLQACKYLTDSSLEPLY-KGALPVLQELDLSYGTLCQSAIEELLSCCTHLTRVSLNGC 810
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFP----HENIHESIDQPNRLLQNLNCVGCPNIR 719
NMHDLNWG S E P V + P EN+ E +QP RLLQNLNCVGCPNIR
Sbjct: 811 ANMHDLNWGCSRAHTAELPGV----NVLPIASSPENVLELSEQPIRLLQNLNCVGCPNIR 866
Query: 720 KVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFL 779
KVFIP A C L LNLSLSANLKEVDVAC NL +LNLSNC SLE LKL+CP+LTSLFL
Sbjct: 867 KVFIPSTAHCSRLLFLNLSLSANLKEVDVACLNLSWLNLSNCSSLEVLKLECPRLTSLFL 926
Query: 780 QSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTTS 835
QSCNI+EE VE+AI++C MLETLDVRFCPKI S SMGRLRAAC SLKRIFSSL+ S
Sbjct: 927 QSCNINEEAVEAAISKCTMLETLDVRFCPKISSMSMGRLRAACSSLKRIFSSLSAS 982
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|296081717|emb|CBI20722.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1187 bits (3071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 618/769 (80%), Positives = 679/769 (88%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWRA S+HEDFWRCLNFENR IS EQFED+C+RYPNATEVNI+GAP+IH LVM A+S LR
Sbjct: 189 QWRAGSSHEDFWRCLNFENRNISEEQFEDMCRRYPNATEVNIFGAPSIHSLVMTAMSSLR 248
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE LTLG+G LGD FF ALADC MLK L VNDATLGNG+QEIPI HD+L L+ITKCRV
Sbjct: 249 NLETLTLGKGTLGDTFFQALADCYMLKRLLVNDATLGNGIQEIPIYHDRLHHLQITKCRV 308
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
+R+S+RCPQLE LSLKRS+MA AVLNCPLLH LDI SCHKL+DAAIR AATSCP LESLD
Sbjct: 309 LRISVRCPQLETLSLKRSSMAHAVLNCPLLHDLDIGSCHKLTDAAIRSAATSCPLLESLD 368
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
MSNCSCVSD++LREIAL+CANL IL++SYCPNISLESVRL MLTVL+LHSCEGITSASMA
Sbjct: 369 MSNCSCVSDDTLREIALTCANLHILDASYCPNISLESVRLSMLTVLKLHSCEGITSASMA 428
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
AISHSYMLEVLELDNC+LLTSVSLELPRLQNIRLVHCRKF DLNLR++MLSS+ VSNC A
Sbjct: 429 AISHSYMLEVLELDNCSLLTSVSLELPRLQNIRLVHCRKFVDLNLRSIMLSSMTVSNCPA 488
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
LHRIN+TSNSLQKL LQKQ +LT+LALQCQ LQEVDLTDCESLTNS+C+VFSD GGCPML
Sbjct: 489 LHRINVTSNSLQKLVLQKQASLTTLALQCQYLQEVDLTDCESLTNSICDVFSDDGGCPML 548
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSLVLDNCE LT V F STSLVSLSLVGCRAIT+LEL CP LE+V LDGCDH+E ASF P
Sbjct: 549 KSLVLDNCECLTAVGFRSTSLVSLSLVGCRAITSLELVCPYLEQVHLDGCDHLERASFRP 608
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
V L+SLNLGICPKLS L IEA MV LELKGCG LS+A INCP+LTSLDASFCS+LKDDC
Sbjct: 609 VGLRSLNLGICPKLSALHIEAPSMVQLELKGCGGLSEASINCPMLTSLDASFCSKLKDDC 668
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSAT SCP IESLILMSC S+G +GL SLR L +LT+LDLSYTFL NL+PVFESCLQLK
Sbjct: 669 LSATAASCPFIESLILMSCPSVGYEGLSSLRLLPHLTLLDLSYTFLMNLQPVFESCLQLK 728
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT++SLE+LYK+G+LPAL ELDLSYG LCQSAIEELLA CTHLTHVSLNGC
Sbjct: 729 VLKLQACKYLTDSSLEALYKEGALPALCELDLSYGALCQSAIEELLACCTHLTHVSLNGC 788
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI 723
NMHDLNWG S E PS+YN+ + H + HE I+QPNRLLQNLNCVGC NI+KV I
Sbjct: 789 LNMHDLNWGFSSGPISELPSIYNTSSLSSHGDDHELIEQPNRLLQNLNCVGCQNIKKVLI 848
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
PP ARC HLSSLNLSLSANLKEVDVAC+NLCFLNLSNC SLE LKL+CP+LTSLFLQSCN
Sbjct: 849 PPMARCTHLSSLNLSLSANLKEVDVACYNLCFLNLSNCSSLEILKLECPRLTSLFLQSCN 908
Query: 784 IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSL 832
I E VE+AI+QC MLETLD+RFCPK+ + SM LRA CPSLKRIFSSL
Sbjct: 909 ITVEAVEAAISQCNMLETLDIRFCPKLSNASMKTLRAVCPSLKRIFSSL 957
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356514729|ref|XP_003526056.1| PREDICTED: F-box/LRR-repeat protein 15-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1175 bits (3040), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 594/768 (77%), Positives = 661/768 (86%), Gaps = 1/768 (0%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWR ASAHEDFW+ LNFE+R ISVEQFED+C+RYPN T + + G PA + LVMKA+S LR
Sbjct: 127 QWRTASAHEDFWKSLNFEDRNISVEQFEDICRRYPNITAIRMSG-PASNQLVMKAISSLR 185
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLEALTLG+ + D FFHALADCSML+ L++NDA LG+G+QEI +NHD+L L++TKCRV
Sbjct: 186 NLEALTLGKTHIMDNFFHALADCSMLRRLSINDAILGSGLQEISVNHDRLCHLQLTKCRV 245
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
MR+++RCPQLE +SLKRSNMAQ VLNCPLL LDI SCHKL D+AIR A TSCPQL SLD
Sbjct: 246 MRMTVRCPQLEIMSLKRSNMAQTVLNCPLLQELDIGSCHKLPDSAIRSAVTSCPQLVSLD 305
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
MSNCS VSDE+LREI+ +CANL L++SYCPNISLE+VRLPMLTVL+LHSCEGITSASM
Sbjct: 306 MSNCSSVSDETLREISQNCANLSFLDASYCPNISLETVRLPMLTVLKLHSCEGITSASMT 365
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
AISHSYMLEVLELDNC+LLTSVSL+LPRLQNIRLVHCRKFADLNL +MLSSI+VSNC
Sbjct: 366 AISHSYMLEVLELDNCSLLTSVSLDLPRLQNIRLVHCRKFADLNLMTLMLSSILVSNCPV 425
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
LHRINITSNSLQKL++ KQ++LT+LALQCQ LQEVDL++CESL NSVC VF+DGGGCPML
Sbjct: 426 LHRINITSNSLQKLTIPKQDSLTTLALQCQSLQEVDLSECESLNNSVCNVFNDGGGCPML 485
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSLVLDNCE LT V+F STSL+SLSL GCRAIT LEL CP LEKV LDGCDH+E ASF P
Sbjct: 486 KSLVLDNCESLTSVQFISTSLISLSLGGCRAITNLELTCPNLEKVILDGCDHLERASFCP 545
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
V L SLNLGICPKL+TL IEA MV LELKGCGVLS+A+INCPLLTSLDASFCSQL D C
Sbjct: 546 VGLLSLNLGICPKLNTLSIEAPFMVSLELKGCGVLSEAFINCPLLTSLDASFCSQLTDGC 605
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSATT SCPLIESLILMSC SIG DGL SL L NL +LDLSYTFL NL+P+F+SCLQLK
Sbjct: 606 LSATTVSCPLIESLILMSCSSIGSDGLRSLYCLPNLIVLDLSYTFLVNLQPIFDSCLQLK 665
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT+TSLE LYK G+LPALQELDLSYGTLCQSAI+ELLAYCT+LTHVSL GC
Sbjct: 666 VLKLQACKYLTDTSLEPLYKGGALPALQELDLSYGTLCQSAIDELLAYCTNLTHVSLTGC 725
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI 723
NMHDLNWG+S Q P+V +ENI ES +Q RLLQNLNCVGCPNIRKV I
Sbjct: 726 VNMHDLNWGSSCGQSDNFPAVNTPSRASSNENIPESSEQSTRLLQNLNCVGCPNIRKVVI 785
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
P +A CFHL LNLSLSANLKEVDV C NLCFLNLSNC SLE LKL+CPKLTSLFLQSCN
Sbjct: 786 PLRANCFHLLFLNLSLSANLKEVDVTCLNLCFLNLSNCSSLEILKLECPKLTSLFLQSCN 845
Query: 784 IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSS 831
IDEE VE+AI++C +LETLDVRFCPKI S SMGRLR C SLKRIFSS
Sbjct: 846 IDEEAVEAAISKCSILETLDVRFCPKISSMSMGRLRTICSSLKRIFSS 893
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297798620|ref|XP_002867194.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297313030|gb|EFH43453.1| predicted protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1164 bits (3010), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 574/768 (74%), Positives = 663/768 (86%), Gaps = 5/768 (0%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWR ASAHEDFW+ LNFEN +IS+EQFE++C RYPNATEVN+YGAPA++ L MKA + LR
Sbjct: 222 QWRVASAHEDFWKVLNFENIRISMEQFENMCSRYPNATEVNVYGAPAVNALAMKAATTLR 281
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE LT+G+G + ++FF AL +C+ML+S+ V+DA LGNG QEI ++HD+LR L+ITKCRV
Sbjct: 282 NLEVLTIGKGHISESFFQALGECNMLRSVTVSDAILGNGAQEIHLSHDRLRELKITKCRV 341
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
MR+SIRCPQL LSLKRSNM+QA+LNCPLL LLDIASCHKL DAAIR AATSCPQLESLD
Sbjct: 342 MRLSIRCPQLRSLSLKRSNMSQAMLNCPLLQLLDIASCHKLLDAAIRSAATSCPQLESLD 401
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
+SNCSCVSDE+LREIA +CANL ILN+SYCPNISLESV LPMLTVL+LHSCEGITSASM
Sbjct: 402 VSNCSCVSDETLREIAQACANLHILNASYCPNISLESVHLPMLTVLKLHSCEGITSASMT 461
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
I++S LEVLELDNCNLLTSVSL L RLQ+I LVHCRKF +LNL++ MLSSI VSNC A
Sbjct: 462 WIANSPALEVLELDNCNLLTSVSLHLSRLQSISLVHCRKFTELNLQSTMLSSITVSNCPA 521
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
L RI ITSNSL++L+LQKQENLT+L LQC LQEVDL+DCESL+NSVC++FSD GGCPML
Sbjct: 522 LRRITITSNSLRRLALQKQENLTTLVLQCHSLQEVDLSDCESLSNSVCKIFSDDGGCPML 581
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSL+LDNCE LT VRFC++SL SLSLVGCRA+T+LELKCP +E++CLDGCDH+E+A F P
Sbjct: 582 KSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLELKCPRIEQICLDGCDHLETAFFQP 641
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
VAL+SLNLGICPKLS L IEA +MV LELKGCGVLS+A I CPLLTSLDASFCSQL+DDC
Sbjct: 642 VALRSLNLGICPKLSVLNIEAPYMVSLELKGCGVLSEASIFCPLLTSLDASFCSQLRDDC 701
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSATT SCPLIESL+LMSC SIG DGL SL L NLT+LDLSYTFL NLEPVF+SC+QLK
Sbjct: 702 LSATTASCPLIESLVLMSCPSIGSDGLSSLNGLPNLTVLDLSYTFLMNLEPVFKSCVQLK 761
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT++SLE LYK+G+LPAL+ELDLSYGTLCQ+AI++LLA CTHLTH+SLNGC
Sbjct: 762 VLKLQACKYLTDSSLEPLYKEGALPALEELDLSYGTLCQTAIDDLLACCTHLTHLSLNGC 821
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI 723
NMHDL+WG++ F+ VY+S EN E + NRLLQNLNCVGCPNIRKV I
Sbjct: 822 VNMHDLDWGSTSVHLFDYFGVYSS-----SENTQEPAETANRLLQNLNCVGCPNIRKVLI 876
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
PP AR +HLS+LNLSLS NLKEVD++C NL LNLSNCCSLE LKL CP+L SLFLQSCN
Sbjct: 877 PPAARFYHLSTLNLSLSVNLKEVDLSCSNLVLLNLSNCCSLEVLKLGCPRLASLFLQSCN 936
Query: 784 IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSS 831
+DE GVE+AI+ C LETLD+RFCPKI S SM + R CPSLKR+FSS
Sbjct: 937 MDEAGVEAAISGCSSLETLDLRFCPKISSVSMTKFRTVCPSLKRVFSS 984
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334187119|ref|NP_567916.2| F-box/LRR-repeat protein 15 [Arabidopsis thaliana] gi|124007179|sp|Q9SMY8.2|FBL15_ARATH RecName: Full=F-box/LRR-repeat protein 15 gi|332660791|gb|AEE86191.1| F-box/LRR-repeat protein 15 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1162 bits (3005), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 572/768 (74%), Positives = 662/768 (86%), Gaps = 5/768 (0%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWR ASAHEDFWR LNFEN +IS+EQFE++C RYPNATEVN+YGAPA++ L MKA + LR
Sbjct: 222 QWRVASAHEDFWRVLNFENIRISMEQFENMCSRYPNATEVNVYGAPAVNALAMKAATTLR 281
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE LT+G+G + ++FF AL +C+ML+S+ V+DA LGNG QEI ++HD+LR L+ITKCRV
Sbjct: 282 NLEVLTIGKGHISESFFQALGECNMLRSVTVSDAILGNGAQEIHLSHDRLRELKITKCRV 341
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
MR+SIRCPQL LSLKRSNM+QA+LNCPLL LLDIASCHKL DAAIR AA SCPQLESLD
Sbjct: 342 MRLSIRCPQLRSLSLKRSNMSQAMLNCPLLQLLDIASCHKLLDAAIRSAAISCPQLESLD 401
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
+SNCSCVSDE+LREIA +CANL ILN+SYCPNISLESV LPMLTVL+LHSCEGITSASM
Sbjct: 402 VSNCSCVSDETLREIAQACANLHILNASYCPNISLESVHLPMLTVLKLHSCEGITSASMT 461
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
I++S LEVLELDNCNLLT+VSL L RLQ+I LVHCRKF DLNL+++MLSSI VSNC A
Sbjct: 462 WIANSPALEVLELDNCNLLTTVSLHLSRLQSISLVHCRKFTDLNLQSIMLSSITVSNCPA 521
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
L RI ITSN+L++L+LQKQENLT+L LQC LQEVDL+DCESL+NSVC++FSD GGCPML
Sbjct: 522 LRRITITSNALRRLALQKQENLTTLVLQCHSLQEVDLSDCESLSNSVCKIFSDDGGCPML 581
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSL+LDNCE LT VRFC++SL SLSLVGCRA+T+LELKCP +E++CLDGCDH+E+A F P
Sbjct: 582 KSLILDNCESLTAVRFCNSSLASLSLVGCRAVTSLELKCPRIEQICLDGCDHLETAFFQP 641
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
VAL+SLNLGICPKLS L IEA +MV LELKGCGVLS+A I CPLLTSLDASFCSQL+DDC
Sbjct: 642 VALRSLNLGICPKLSVLNIEAPYMVSLELKGCGVLSEASIMCPLLTSLDASFCSQLRDDC 701
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
LSATT SCPLIESL+LMSC SIG DGL SL L NLT+LDLSYTFL NLEPVF+SC+QLK
Sbjct: 702 LSATTASCPLIESLVLMSCPSIGSDGLSSLNGLPNLTVLDLSYTFLMNLEPVFKSCIQLK 761
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
VLKLQACKYLT++SLE LYK+G+LPAL+ELDLSYGTLCQ+AI++LLA CTHLTH+SLNGC
Sbjct: 762 VLKLQACKYLTDSSLEPLYKEGALPALEELDLSYGTLCQTAIDDLLACCTHLTHLSLNGC 821
Query: 664 GNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI 723
NMHDL+WG++ F+ VY+S +N E + NRLLQNLNCVGCPNIRKV I
Sbjct: 822 VNMHDLDWGSTSVHLFDYFGVYSS-----SDNTQEPAETANRLLQNLNCVGCPNIRKVLI 876
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
PP AR +HLS+LNLSLS NLKEVD+ C NL LNLSNCCSLE LKL CP+L SLFLQSCN
Sbjct: 877 PPAARFYHLSTLNLSLSVNLKEVDLTCSNLVLLNLSNCCSLEVLKLGCPRLASLFLQSCN 936
Query: 784 IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSS 831
+DE GVE+AI+ C LETLD+RFCPKI S SM + R CPSLKR+FSS
Sbjct: 937 MDEAGVEAAISGCSSLETLDLRFCPKISSVSMSKFRTVCPSLKRVFSS 984
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357437317|ref|XP_003588934.1| F-box/LRR-repeat protein [Medicago truncatula] gi|355477982|gb|AES59185.1| F-box/LRR-repeat protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1142 bits (2954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 591/812 (72%), Positives = 665/812 (81%), Gaps = 41/812 (5%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
QWRAAS HEDFW+ LNFENR IS EQFED+C+RYPNAT ++I G P+I+LLVMKA+SL R
Sbjct: 214 QWRAASTHEDFWKSLNFENRDISEEQFEDMCRRYPNATALSISG-PSIYLLVMKAISLFR 272
Query: 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183
NLE LTLGRGQ+GDAFF AL DC+ML+ L++ND+TLGN +QEI I H++L LE+TKCRV
Sbjct: 273 NLEVLTLGRGQIGDAFFLALPDCTMLRELHINDSTLGNSIQEISIVHERLCHLELTKCRV 332
Query: 184 MRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
MR+ +RCPQL+ +SLKRSNMAQ VLNCPLL LD+ SCHKL DAAIR AATSCPQL LD
Sbjct: 333 MRIQVRCPQLKTMSLKRSNMAQVVLNCPLLLELDMGSCHKLPDAAIRAAATSCPQLVKLD 392
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMA 303
M NCSCVSDE+LREIA C NL L++SYCPNISLESVRLPMLT+L+LHSCEGITSASMA
Sbjct: 393 MRNCSCVSDETLREIAQHCPNLGFLDASYCPNISLESVRLPMLTILRLHSCEGITSASMA 452
Query: 304 AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
AI+HS MLEVLELDNC+LLTSVSL+LPRLQNIRLV+CRK ADLNLRA+ LSSI VSNC+
Sbjct: 453 AIAHSSMLEVLELDNCSLLTSVSLDLPRLQNIRLVYCRKLADLNLRAISLSSIQVSNCSV 512
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
LHRINITSNSLQKL+LQKQ++LT+LALQCQ LQEVDL++CESLTN+VC+VFSDGGGCPML
Sbjct: 513 LHRINITSNSLQKLALQKQDSLTTLALQCQSLQEVDLSECESLTNTVCDVFSDGGGCPML 572
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
KSLVLDNCE LT VRF STSLVSLSL GCRA+T LEL CP LEKV LDGCDH+E+ASF P
Sbjct: 573 KSLVLDNCESLTSVRFISTSLVSLSLGGCRAVTTLELTCPYLEKVILDGCDHLENASFCP 632
Query: 484 VA--------------------------LQSLNLGICPKLSTLGIEALHMVVLELKGCGV 517
V+ L+SLNLGICPKL+ L IEA+ MV LELKGCG
Sbjct: 633 VSDTDILDASQFDFYERKSFISSLLSVGLRSLNLGICPKLNILRIEAMLMVSLELKGCGG 692
Query: 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQ 577
LS+A +NCPLLTSLDASFCSQL DDCLSATT +CPLIESLILMSC SIG DGL SL L
Sbjct: 693 LSEASLNCPLLTSLDASFCSQLTDDCLSATTRACPLIESLILMSCPSIGLDGLCSLHWLP 752
Query: 578 NLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY 637
NL +LDLSYTFL L+PVF+SC QLKVLKLQACKYLT++SLE LYK G+LPALQELDLSY
Sbjct: 753 NLALLDLSYTFLVTLQPVFDSCKQLKVLKLQACKYLTDSSLEPLYKGGALPALQELDLSY 812
Query: 638 GTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIH 697
GTLCQ AIEELL+ CTHLT VSLNGC NMHDLNWG S + E P + +EN H
Sbjct: 813 GTLCQKAIEELLSCCTHLTRVSLNGCVNMHDLNWGHSQGKFPELPGISILSIASSYENNH 872
Query: 698 ESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLN 757
S +QP RLLQNLNCVGCPNIRKVFIP A C HL LNLSLSANLKEVDVAC NLC+LN
Sbjct: 873 VSSEQPIRLLQNLNCVGCPNIRKVFIPSTAHCSHLLFLNLSLSANLKEVDVACLNLCWLN 932
Query: 758 LSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPK-------- 809
LSNC SLE LKL+CP+LT+LFLQ+CNIDEE VE+AI++C MLETLDVRFCPK
Sbjct: 933 LSNCSSLEVLKLECPRLTNLFLQACNIDEEAVEAAISKCTMLETLDVRFCPKVRANAYNI 992
Query: 810 ------ICSTSMGRLRAACPSLKRIFSSLTTS 835
I S SMG+ RAAC LKRI+SSL+TS
Sbjct: 993 FEMLISISSASMGKFRAACSGLKRIYSSLSTS 1024
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 835 | ||||||
| TAIR|locus:505006471 | 610 | AT4G15475 "AT4G15475" [Arabido | 0.520 | 0.713 | 0.253 | 9.3e-19 | |
| TAIR|locus:2149805 | 665 | AT5G01720 "AT5G01720" [Arabido | 0.558 | 0.700 | 0.235 | 6.6e-18 | |
| DICTYBASE|DDB_G0287415 | 1012 | DDB_G0287415 "SCF E3 ubiquitin | 0.537 | 0.443 | 0.218 | 9.7e-18 | |
| RGD|1562243 | 422 | Fbxl2 "F-box and leucine-rich | 0.368 | 0.729 | 0.265 | 5e-17 | |
| MGI|MGI:1919429 | 423 | Fbxl2 "F-box and leucine-rich | 0.368 | 0.728 | 0.265 | 5e-17 | |
| UNIPROTKB|F1PWK1 | 422 | FBXL2 "Uncharacterized protein | 0.411 | 0.815 | 0.258 | 1.1e-16 | |
| TAIR|locus:2145512 | 623 | EBF2 "EIN3-binding F box prote | 0.621 | 0.833 | 0.229 | 1.2e-16 | |
| UNIPROTKB|F1NHD2 | 423 | FBXL2 "Uncharacterized protein | 0.402 | 0.794 | 0.258 | 2.4e-16 | |
| UNIPROTKB|A6H779 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.4 | 0.789 | 0.262 | 2.4e-16 | |
| UNIPROTKB|Q9UKC9 | 423 | FBXL2 "F-box/LRR-repeat protei | 0.411 | 0.813 | 0.258 | 2.4e-16 |
| TAIR|locus:505006471 AT4G15475 "AT4G15475" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 259 (96.2 bits), Expect = 9.3e-19, P = 9.3e-19
Identities = 125/494 (25%), Positives = 215/494 (43%)
Query: 193 LEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD 252
+E SL + + P + L + C +S + A C L+SLD+ C V D
Sbjct: 122 VESSSLTDTGLTALANGFPRIENLSLIWCPNVSSVGLCSLAQKCTSLKSLDLQGCY-VGD 180
Query: 253 ESLREIALSCANLRILNSSYCPNIS-LESVRLPM-----LTVLQLHSCEGITSASMAAI- 305
+ L + C L LN +C ++ + + L + L + + + IT S+ A+
Sbjct: 181 QGLAAVGKFCKQLEELNLRFCEGLTDVGVIDLVVGCSKSLKSIGVAASAKITDLSLEAVG 240
Query: 306 SHSYMLEVLELDNCNL----LTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNC 361
SH +LEVL LD+ + L +V+ RL+N++L C D+ A+ + C
Sbjct: 241 SHCKLLEVLYLDSEYIHDKGLIAVAQGCHRLKNLKL-QCVSVTDVAFAAV--GEL----C 293
Query: 362 AALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 421
+L R+ + S Q + + + ++ + L+++ L+DC ++ E + G C
Sbjct: 294 TSLERLALYS--FQHFT---DKGMRAIGKGSKKLKDLTLSDCYFVSCKGLEAIAHG--CK 346
Query: 422 MLKSLVLDNCE-----GLTVVRFCSTSLVSLSLVGCRAI--TALE---LKCPILEKVCLD 471
L+ + ++ C G+ + L L+L+ C+ I +AL+ C LE + L
Sbjct: 347 ELERVEINGCHNIGTRGIEAIGKSCPRLKELALLYCQRIGNSALQEIGKGCKSLEILHLV 406
Query: 472 GCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSL 531
C I +A+ S+ G C L L I + E+ G++S +C LT L
Sbjct: 407 DCSGIGD-----IAMCSIAKG-CRNLKKLHIRRCY----EIGNKGIISIGK-HCKSLTEL 455
Query: 532 DASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL-RSLQNLTMLDLSYTFLT 590
FC ++ + L A C L + L + C I G+ ++ R LT LD+S L
Sbjct: 456 SLRFCDKVGNKALIAIGKGCSL-QQLNVSGCNQISDAGITAIARGCPQLTHLDISV--LQ 512
Query: 591 N-----LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSA- 644
N L + E C LK L L C ++T+ L L +K L L+ + Y SA
Sbjct: 513 NIGDMPLAELGEGCPMLKDLVLSHCHHITDNGLNHLVQKCKL--LETCHMVYCPGITSAG 570
Query: 645 IEELLAYCTHLTHV 658
+ +++ C H+ V
Sbjct: 571 VATVVSSCPHIKKV 584
|
|
| TAIR|locus:2149805 AT5G01720 "AT5G01720" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 252 (93.8 bits), Expect = 6.6e-18, P = 6.6e-18
Identities = 128/543 (23%), Positives = 242/543 (44%)
Query: 93 VCQRYPNATEVNIYGAPAIHLLVMKAVSLLRN--LEALTLGR-GQLGDAFFHALA-DCSM 148
+ RY N T++++ P + + V L L +L L R G A LA C
Sbjct: 67 ILTRYRNTTDLDLTFCPRVTDYALSVVGCLSGPTLRSLDLSRSGSFSAAGLLRLALKCVN 126
Query: 149 LKSLNVNDAT-LGNGVQEIPINHDQLRRLEITKCRVMR-VSIRCPQLEHLSLKRSNMAQA 206
L +++++AT + + + L RL++ +C+++ + I C
Sbjct: 127 LVEIDLSNATEMRDADAAVVAEARSLERLKLGRCKMLTDMGIGC---------------I 171
Query: 207 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR 266
+ C L+ + + C + D + L A C + +LD+S ++ + L +I L +L
Sbjct: 172 AVGCKKLNTVSLKWCVGVGDLGVGLLAVKCKDIRTLDLSYLP-ITGKCLHDI-LKLQHLE 229
Query: 267 ILNSSYCPNI---SLESVR--LPMLTVLQLHSCEGITSASMAAI-SHSYMLEVLELDNCN 320
L C + SL+S+R L L SC+ +T + ++ S + L+ L+L +C+
Sbjct: 230 ELLLEGCFGVDDDSLKSLRHDCKSLKKLDASSCQNLTHRGLTSLLSGAGYLQRLDLSHCS 289
Query: 321 LLTSV----SLE-LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQ 375
+ S+ SL+ + LQ+IRL C D L+A + ++ C +L + SL
Sbjct: 290 SVISLDFASSLKKVSALQSIRLDGCSVTPD-GLKA--IGTL----CNSLKEV-----SLS 337
Query: 376 KLSLQKQENLTSLALQCQCLQEVDLTDCESLTN-SVCEVFSDGGGCPMLKSLVLDNC--- 431
K E L+SL ++ + L+++D+T C L+ S+ ++ CP+L SL +++C
Sbjct: 338 KCVSVTDEGLSSLVMKLKDLRKLDITCCRKLSRVSITQI---ANSCPLLVSLKMESCSLV 394
Query: 432 --EGLTVVRFCSTSLVSLSLV-------GCRAITALELKCPILEKVCLDGCDHIESASFV 482
E ++ L L L G ++I++ + +CL+ D + S++
Sbjct: 395 SREAFWLIGQKCRLLEELDLTDNEIDDEGLKSISSCLSLSSLKLGICLNITD--KGLSYI 452
Query: 483 PVA---LQSLNL----GICPK-LSTLGIEALHMVVLELKGCGVLSDAYI----NCPLLTS 530
+ L+ L+L GI +ST+ +H+ + + C ++D + C LL +
Sbjct: 453 GMGCSNLRELDLYRSVGITDVGISTIAQGCIHLETINISYCQDITDKSLVSLSKCSLLQT 512
Query: 531 LDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL-QNLTMLDLSYTFL 589
++ C + L+A C + + L C SI GL +L QNL +++S T +
Sbjct: 513 FESRGCPNITSQGLAAIAVRCKRLAKVDLKKCPSINDAGLLALAHFSQNLKQINVSDTAV 572
Query: 590 TNL 592
T +
Sbjct: 573 TEV 575
|
|
| DICTYBASE|DDB_G0287415 DDB_G0287415 "SCF E3 ubiquitin ligase complex F-box protein GRR1" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 216 (81.1 bits), Expect = 9.7e-18, Sum P(2) = 9.7e-18
Identities = 106/486 (21%), Positives = 210/486 (43%)
Query: 202 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALS 261
++ ++NC L L+++ C + S + QL+SL+++ C +++++L +I+ S
Sbjct: 218 DLLNTIVNCKNLEHLNLSGCVQFSSTLFSKQISRLNQLKSLNLNGCQQITNDNLCKISNS 277
Query: 262 CANLRILNSSYCPNISLESV-----RLPMLTVLQLHSCEGITSASMAAISHSYM-LEVLE 315
C +L ++ + C + + + + + +L + +T SM I L+ L
Sbjct: 278 CKHLEEIHLNGCNRVDDQGIVDLVSKCKKIKILSMSGLNLLTDRSMTMICQKLQDLQSLC 337
Query: 316 LDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA-LHRINITSNSL 374
+++ T SL L + + C + + +LS I + NC++ L IN++
Sbjct: 338 INHIQWFTEKSLMLIGKKFKNSLRCFYAYNTLITDSVLSDIAI-NCSSQLSVINVS---- 392
Query: 375 QKLSLQKQENLTSLALQC-QCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEG 433
K ++ ++A+ C + L ++ L + E L S+ + G C L +L LD C
Sbjct: 393 -KCKNITNTSIATIAINCGKMLTKLFLQNIECL--SIHSISLLGKYCTQLTTLRLDGCLN 449
Query: 434 LTVVRFCSTS----LVSLSLVGCRAITALELKCPILEKVC-LDGCDHIESASFVPVALQS 488
L S L L+L I + L IL + L+ E+ F + ++
Sbjct: 450 LMDDSIQSLQPLERLKILNLSNLPKINEISL-IRILPSLKDLEELYLYENPRFSDLTIKQ 508
Query: 489 LNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINC-PLLTSLDASFCSQLKDDCLSAT 547
L++ P++++L ++ V ++ + N L L+ S + D + A
Sbjct: 509 LSISN-PRITSLRVDKTVFV----SDASIIP--FTNSVSYLRVLNLSGLQSIHDSSIMAL 561
Query: 548 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM----LDLSYTFLTNLEPVFESCLQLK 603
TS I+ L L C+SIG D L+++ + ++ +D S+ F LK
Sbjct: 562 ATSQKFIQKLYLSGCKSIGNDSLFAITGHMSSSLEVLKIDDSHQFTEEALSSISLLKGLK 621
Query: 604 VLKLQACKYLTNTSLESL-YKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662
+L + C + TN +++ + Y L L L + + + LL+ L + ++G
Sbjct: 622 ILSISHCVHTTNNTIDLIGYNCRELEQLYMCKLPM--VNDAVLPALLSNLCKLKILRIDG 679
Query: 663 CGNMHD 668
C NM D
Sbjct: 680 CVNMTD 685
|
|
| RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 93/350 (26%), Positives = 156/350 (44%)
Query: 183 VMRVSIRCPQ-LEHLSLKR------SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATS 235
V +S RC L LSL+ S++ NC + L++ C K++D+ +
Sbjct: 68 VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 127
Query: 236 CPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPM-----LTVLQ 290
C +L+ LD+++C V++ SL+ I+ C NL LN S+C I+ E + + L L
Sbjct: 128 CSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALL 187
Query: 291 LHSCEGITSASMAAI-SHSYMLEVLELDNCNLLTS-----VSLELPRLQNIRLVHCRKFA 344
L C + ++ I +H + L L L +C+ +T + RLQ + L C
Sbjct: 188 LRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLT 247
Query: 345 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCE 404
D +L A+ L NC L + + S T LA C L+++DL +C
Sbjct: 248 DASLTALGL------NCPRLQVLEAA-----RCSHLTDAGFTLLARNCHDLEKMDLEECV 296
Query: 405 SLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-KCP 463
+T+S S CP L++L L +CE +T +S S G + LEL C
Sbjct: 297 LITDSTLIQLSIH--CPKLQALSLSHCELITDEGILH---LSSSTCGHERLRVLELDNCL 351
Query: 464 ILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELK 513
++ L+ H+E+ L+ L L C +++ GI+ + + +K
Sbjct: 352 LVTDASLE---HLENCR----GLERLELYDCQQVTRAGIKRMRAQLPRVK 394
|
|
| MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 239 (89.2 bits), Expect = 5.0e-17, P = 5.0e-17
Identities = 93/350 (26%), Positives = 156/350 (44%)
Query: 183 VMRVSIRCPQ-LEHLSLKR------SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATS 235
V +S RC L LSL+ S++ NC + L++ C K++D+ +
Sbjct: 69 VENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRF 128
Query: 236 CPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPM-----LTVLQ 290
C +L+ LD+++C V++ SL+ I+ C NL LN S+C I+ E + + L L
Sbjct: 129 CSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCDQITKEGIEALVRGCRGLKALL 188
Query: 291 LHSCEGITSASMAAI-SHSYMLEVLELDNCNLLTS-----VSLELPRLQNIRLVHCRKFA 344
L C + ++ I +H + L L L +C+ +T + RLQ + L C
Sbjct: 189 LRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNLT 248
Query: 345 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCE 404
D +L A+ L NC L + + S T LA C L+++DL +C
Sbjct: 249 DASLTALGL------NCPRLQVLEAA-----RCSHLTDAGFTLLARNCHELEKMDLEECV 297
Query: 405 SLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-KCP 463
+T+S S CP L++L L +CE +T +S S G + LEL C
Sbjct: 298 LITDSTLVQLSIH--CPKLQALSLSHCELITDEGILH---LSSSTCGHERLRVLELDNCL 352
Query: 464 ILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELK 513
++ L+ H+E+ L+ L L C +++ GI+ + + +K
Sbjct: 353 LVTDASLE---HLENCR----GLERLELYDCQQVTRAGIKRMRAQLPHVK 395
|
|
| UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 236 (88.1 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 101/391 (25%), Positives = 177/391 (45%)
Query: 143 LADCSML-KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQ-LEHLSLKR 200
L C+ + K+ N+ A G+ Q I + + Q ++ V +S RC L LSL+
Sbjct: 31 LCRCAQISKAWNIL-ALDGSNWQRIDLFNFQT---DVEGRVVENISKRCGGFLRKLSLRG 86
Query: 201 ------SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254
S++ NC + L++ C K++D+ + C +L+ LD+++C +++ S
Sbjct: 87 CIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSS 146
Query: 255 LREIALSCANLRILNSSYCPNISLESVRLPM-----LTVLQLHSCEGITSASMAAI-SHS 308
L+ I+ C NL LN S+C I+ + + + L L L C + ++ I ++
Sbjct: 147 LKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYC 206
Query: 309 YMLEVLELDNCNLLTS-----VSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
+ L L L +C+ +T + RLQ + L C D +L A+ L NC
Sbjct: 207 HELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALAL------NCP- 259
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
R+ I + + S T LA C L+++DL +C +T+S S CP L
Sbjct: 260 --RLQILEAA--RCSHLTDAGFTLLARNCHDLEKMDLEECILITDSTLIQLSVH--CPKL 313
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-KCPILEKVCLDGCDHIESASFV 482
++L L +CE +T +S S G + LEL C ++ V L+ H+E+
Sbjct: 314 QALSLSHCELITDDGILH---LSNSTCGHERLRVLELDNCLLITDVALE---HLENCR-- 365
Query: 483 PVALQSLNLGICPKLSTLGIEALHMVVLELK 513
L+ L L C +++ GI+ + + +K
Sbjct: 366 --GLERLELYDCQQVTRAGIKRMRAQLPHVK 394
|
|
| TAIR|locus:2145512 EBF2 "EIN3-binding F box protein 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 240 (89.5 bits), Expect = 1.2e-16, P = 1.2e-16
Identities = 135/588 (22%), Positives = 249/588 (42%)
Query: 80 FENRKISVEQFEDVC-----QRYPNATEVNIYGAPAIHLL-VMKAVSLLR----NLEALT 129
FE ++ S++ + C +R P+ E + + H L ++ ++S +++ +
Sbjct: 48 FEEKQTSIDVLPEECLFEILRRLPSGQERSACACVSKHWLNLLSSISRSEVNESSVQDVE 107
Query: 130 LGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR 189
G G L + A L ++ V ++ G G+ ++ I ++T + V+
Sbjct: 108 EGEGFLSRSLEGKKATDLRLAAIAVGTSSRG-GLGKLQIRGSGFES-KVTDVGLGAVAHG 165
Query: 190 CPQLEHLSL------KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLD 243
CP L +SL +++ +CP++ LD++ C ++D+ + A +C L L
Sbjct: 166 CPSLRIVSLWNLPAVSDLGLSEIARSCPMIEKLDLSRCPGITDSGLVAIAENCVNLSDLT 225
Query: 244 MSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPM------LTVLQLHSCEGI 297
+ +CS V +E LR IA C NLR ++ CP I + V + LT ++L +
Sbjct: 226 IDSCSGVGNEGLRAIARRCVNLRSISIRSCPRIGDQGVAFLLAQAGSYLTKVKLQMLN-V 284
Query: 298 TSASMAAISHSYMLEVLEL-----DNCN----LLTSVSLELPRLQNIRLVHCRKFADLNL 348
+ S+A I H Y V +L N + + L +L+++ ++ CR D+ L
Sbjct: 285 SGLSLAVIGH-YGAAVTDLVLHGLQGVNEKGFWVMGNAKGLKKLKSLSVMSCRGMTDVGL 343
Query: 349 RAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 408
A+ + C L + SL K L + L +LA L+ + L +C +
Sbjct: 344 EAVG------NGCPDLKHV-----SLNKCLLVSGKGLVALAKSALSLESLKLEECHRINQ 392
Query: 409 SVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKC-PILEK 467
F G LK+ L NC G++ F S S SL C ++ +L ++C P
Sbjct: 393 FGLMGFLMNCGSK-LKAFSLANCLGIS--DFNSES--SLPSPSCSSLRSLSIRCCPGFGD 447
Query: 468 VCLDGCDHIESASFVPVALQSLNLGICPK--LSTLGIEALHMVVLELKGCGVLSDAYIN- 524
L V L LN G+ L + +V + L C +SD ++
Sbjct: 448 ASLAFLGKF-CHQLQDVELCGLN-GVTDAGVRELLQSNNVGLVKVNLSECINVSDNTVSA 505
Query: 525 ---CP--LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQN- 578
C L SL+ C + + L A +C + L + S + G+ +L S N
Sbjct: 506 ISVCHGRTLESLNLDGCKNITNASLVAVAKNCYSVNDLDI-SNTLVSDHGIKALASSPNH 564
Query: 579 LTMLDLSYTFLTNLEPVFESCLQ-----LKVLKLQACKYLTNTSLESL 621
L + LS +++ ++C+Q L L +Q C ++++++++L
Sbjct: 565 LNLQVLSIGGCSSITDKSKACIQKLGRTLLGLNIQRCGRISSSTVDTL 612
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| UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 99/383 (25%), Positives = 176/383 (45%)
Query: 143 LADCSML-KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQ-LEHLSLKR 200
L C+ + K+ NV A G+ Q+I + + Q +I V +S RC L LSL+
Sbjct: 32 LCRCAQVSKAWNVL-ALDGSNWQKIDLFNFQT---DIEGRVVENISKRCGGFLRQLSLRG 87
Query: 201 ------SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254
S++ NC + L++ C K++D+ + C +L+ LD+++C +++ S
Sbjct: 88 CHVVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVAITNSS 147
Query: 255 LREIALSCANLRILNSSYCPNISLESVRLPM-----LTVLQLHSCEGITSASMAAI-SHS 308
L+ ++ C NL LN S+C I+ + + + L L L C + ++ I +H
Sbjct: 148 LKGLSEGCRNLEHLNLSWCDQITKDGIEALVKGCSGLKALFLRGCTQLEDEALKHIQNHC 207
Query: 309 YMLEVLELDNCNLLTSVSLE-----LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
+ L +L L +C ++ + RLQ++ + C D +L A+ L NC
Sbjct: 208 HELAILNLQSCTQISDEGIVKICRGCHRLQSLCVSGCCNLTDASLTALGL------NCP- 260
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
R+ I + + S T LA C L+++DL +C +T+S S CP L
Sbjct: 261 --RLKILEAA--RCSQLTDAGFTLLARNCHELEKMDLEECVLITDSTLIQLSIH--CPKL 314
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-KCPILEKVCLDGCDHIESASFV 482
++L L +CE +T +S S G + LEL C ++ V L+ H+E+
Sbjct: 315 QALSLSHCELITDDGILH---LSNSTCGHERLQVLELDNCLLITDVTLE---HLENCH-- 366
Query: 483 PVALQSLNLGICPKLSTLGIEAL 505
L+ + L C +++ GI+ +
Sbjct: 367 --NLERIELYDCQQVTRAGIKRI 387
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| UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 101/385 (26%), Positives = 174/385 (45%)
Query: 143 LADCSML-KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQ-LEHLSLKR 200
L C+ + K+ N+ A G+ Q I + + Q ++ V +S RC L LSL+
Sbjct: 32 LCRCAQISKAWNIL-ALDGSNWQRIDLFNFQT---DVEGRVVENISKRCGGFLRKLSLRG 87
Query: 201 ------SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254
S++ NC + L++ C K++D+ + C +L+ LD+++C +++ S
Sbjct: 88 CIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSS 147
Query: 255 LREIALSCANLRILNSSYCPNISLESVRLPM-----LTVLQLHSCEGITSASMAAI-SHS 308
L+ I+ C +L LN S+C I+ + V + L L L C + ++ I ++
Sbjct: 148 LKGISEGCRHLEYLNLSWCDQITKDGVEALVRGCRGLRALLLRGCTQLEDEALKHIQNYC 207
Query: 309 YMLEVLELDNCNLLTS---VSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
+ L L L +C+ +T V L PRLQ + L C D +L A+ L NC
Sbjct: 208 HELVSLNLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALAL------NCP- 260
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
R+ I + + S T LA C L+++DL +C +T+ S CP L
Sbjct: 261 --RLQILEAA--RCSHLTDAGFTLLARNCHDLEKMDLEECILITDRTLTQLSIH--CPKL 314
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGC--RAITALEL-KCPILEKVCLDGCDHIESAS 480
++L L +CE +T ++ LS C + LEL C ++ V L+ +H
Sbjct: 315 QALSLSHCELIT-----DDGILHLSNSPCGHERLRVLELDNCLLITDVALEHLEHCRG-- 367
Query: 481 FVPVALQSLNLGICPKLSTLGIEAL 505
L+ L L C +++ GI+ +
Sbjct: 368 -----LERLELYDCQQVTRAGIKRM 387
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| UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 233 (87.1 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 101/391 (25%), Positives = 177/391 (45%)
Query: 143 LADCSML-KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQ-LEHLSLKR 200
L C+ + K+ N+ A G+ Q I + + Q ++ V +S RC L LSL+
Sbjct: 32 LCRCAQISKAWNIL-ALDGSNWQRIDLFNFQT---DVEGRVVENISKRCGGFLRKLSLRG 87
Query: 201 ------SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254
S++ NC + L++ C K++D+ + C +L+ LD+++C +++ S
Sbjct: 88 CIGVGDSSLKTFAQNCRNIEHLNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCVSITNSS 147
Query: 255 LREIALSCANLRILNSSYCPNISLESVRLPM-----LTVLQLHSCEGITSASMAAI-SHS 308
L+ I+ C NL LN S+C I+ + + + L L L C + ++ I ++
Sbjct: 148 LKGISEGCRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLRGCTQLEDEALKHIQNYC 207
Query: 309 YMLEVLELDNCNLLTS-----VSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363
+ L L L +C+ +T + RLQ + L C D +L A+ L NC
Sbjct: 208 HELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGL------NCP- 260
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
R+ I + + S T LA C L+++DL +C +T+S S CP L
Sbjct: 261 --RLQILEAA--RCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIH--CPKL 314
Query: 424 KSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-KCPILEKVCLDGCDHIESASFV 482
++L L +CE +T +S S G + LEL C ++ V L+ H+E+
Sbjct: 315 QALSLSHCELITDDGILH---LSNSTCGHERLRVLELDNCLLITDVALE---HLENCR-- 366
Query: 483 PVALQSLNLGICPKLSTLGIEALHMVVLELK 513
L+ L L C +++ GI+ + + +K
Sbjct: 367 --GLERLELYDCQQVTRAGIKRMRAQLPHVK 395
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9SMY8 | FBL15_ARATH | No assigned EC number | 0.7447 | 0.9137 | 0.7707 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00032274001 | SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (888 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 835 | |||
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 3e-15 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 1e-08 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 1e-06 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 5e-06 | |
| cd09293 | 226 | cd09293, AMN1, Antagonist of mitotic exit network | 9e-06 | |
| smart00367 | 26 | smart00367, LRR_CC, Leucine-rich repeat - CC (cyst | 0.003 | |
| PLN03210 | 1153 | PLN03210, PLN03210, Resistant to P | 0.003 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-15
Identities = 51/184 (27%), Positives = 84/184 (45%), Gaps = 21/184 (11%)
Query: 164 QEIPINHDQLRRLEITKCRV----MRVSIRCPQLEHLSLKRSN------MAQAVLNCPLL 213
Q + I H L LE+ C + + C +L+ L L S + +CP L
Sbjct: 21 QLLRILHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNL 80
Query: 214 HLLDIASCHKLSDAAIRLAATSCPQLESLDMS---NCSCVSDESLREIALSCANLRILNS 270
+LD+ +C ++D+ I AT+CP+L+++++ N ++D SL + +C L+ +
Sbjct: 81 QVLDLRACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGF 140
Query: 271 SYCP-----NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYM---LEVLELDNCNLL 322
+ C L S L L L++C +T S+ AI S L VLE C L+
Sbjct: 141 AGCDVTDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLI 200
Query: 323 TSVS 326
T S
Sbjct: 201 TDFS 204
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 36/179 (20%)
Query: 137 DAFFHALADCSMLKSLNVNDATL--GNGVQEIPINHDQLRRLEITKCR------VMRVSI 188
D L++C+ LK L + + L G+ + + L+ L++ C ++ ++
Sbjct: 42 DPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALAT 101
Query: 189 RCPQLEHLSLKRSNMAQAVL---------NCPLLHLLDIASCHKLSDAAIRLAATSCPQL 239
CP+L+ ++L R + NC L + A C LA+ L
Sbjct: 102 NCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKSL 161
Query: 240 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGIT 298
E L ++NC ++D+S+ IL S+Y PN+S VL+ C IT
Sbjct: 162 ERLSLNNCRNLTDQSIP---------AILASNYFPNLS----------VLEFRGCPLIT 201
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 47/175 (26%), Positives = 78/175 (44%), Gaps = 32/175 (18%)
Query: 358 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG 417
+SNC L ++ + + L E L +LA C LQ +DL CE++T+S + +
Sbjct: 48 LSNCNKLKKLILPGSKLID-----DEGLIALAQSCPNLQVLDLRACENITDS--GIVALA 100
Query: 418 GGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCD--- 474
CP L+++ L L+ +++AL C L+ V GCD
Sbjct: 101 TNCPKLQTINLGRHRN-------------GHLITDVSLSALGKNCTFLQTVGFAGCDVTD 147
Query: 475 --HIESASFVPVALQSLNLGICPKLSTLGIEAL-------HMVVLELKGCGVLSD 520
E AS +L+ L+L C L+ I A+ ++ VLE +GC +++D
Sbjct: 148 KGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEFRGCPLITD 202
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 38/169 (22%), Positives = 68/169 (40%), Gaps = 15/169 (8%)
Query: 482 VPVALQSLNLGICPK-LSTLG--IEALHMVVLELKGCGVLSDAYI-----NCPLLTSLDA 533
+ L+ L L +CP L + L L G ++ D + +CP L LD
Sbjct: 26 LHSGLEWLELYMCPISDPPLDQLSNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDL 85
Query: 534 SFCSQLKDDCLSATTTSCPLIESLIL---MSCQSIGPDGLYSL-RSLQNLTMLDLSYTFL 589
C + D + A T+CP ++++ L + I L +L ++ L + + +
Sbjct: 86 RACENITDSGIVALATNCPKLQTINLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDV 145
Query: 590 TN---LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDL 635
T+ E L+ L L C+ LT+ S+ ++ P L L+
Sbjct: 146 TDKGVWELASGCSKSLERLSLNNCRNLTDQSIPAILASNYFPNLSVLEF 194
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1 | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 9e-06
Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 45/197 (22%)
Query: 439 FCSTSLVSLSLVGCRAIT-----ALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGI 493
L L L G + I AL CP L+ + L C++I + V +A
Sbjct: 49 SNCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATN------ 102
Query: 494 CPKLSTLGIEALHMVVLELKGCGVLSDAYI-----NCPLLTSLDASFCSQLKDDCLSATT 548
CPKL T+ + + +++D + NC L ++ + C + D +
Sbjct: 103 CPKLQTINLG-------RHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELA 154
Query: 549 TSC-PLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKL 607
+ C +E L L +C+ NLT + +N L VL+
Sbjct: 155 SGCSKSLERLSLNNCR--------------NLTDQSIPAILASN------YFPNLSVLEF 194
Query: 608 QACKYLTNTSLESLYKK 624
+ C +T+ S L+K
Sbjct: 195 RGCPLITDFSRIILFKL 211
|
Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226 |
| >gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.003
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 236 CPQLESLDMSNCSCVSDESLREIA 259
CP L LD+S C+ ++DE L+ +A
Sbjct: 1 CPNLRELDLSGCTNITDEGLQALA 24
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Length = 26 |
| >gnl|CDD|215633 PLN03210, PLN03210, Resistant to P | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.003
Identities = 74/302 (24%), Positives = 119/302 (39%), Gaps = 64/302 (21%)
Query: 239 LESLDMSNCSCVSDESLREIALSCANLRILNS---SYCPNISL--ESVRLPMLTVLQLHS 293
LE+L +S+CS SL E+ S L L S C N+ + + L L L L
Sbjct: 659 LETLKLSDCS-----SLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSG 713
Query: 294 CEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELP---RLQNIRLVH-CR-KFADLNL 348
C + S + + S+ L+LD T++ E P RL+N+ + C K L
Sbjct: 714 CSRLKSFPDISTNISW----LDLDE----TAIE-EFPSNLRLENLDELILCEMKSEKLWE 764
Query: 349 RAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 408
R L+ +M + S SL +L L +L L Q L +++ + E+ N
Sbjct: 765 RVQPLTPLM----------TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN 814
Query: 409 SVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE------LKC 462
E G L+SL L C L ST++ L+L T +E K
Sbjct: 815 --LETLPTGINLESLESLDLSGCSRLRTFPDISTNISDLNLSR----TGIEEVPWWIEKF 868
Query: 463 PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY 522
L + ++GC+++ + +S L H+ ++ CG L++A
Sbjct: 869 SNLSFLDMNGCNNL--------------QRVSLNISKLK----HLETVDFSDCGALTEAS 910
Query: 523 IN 524
N
Sbjct: 911 WN 912
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syringae 6; Provisional. Length = 1153 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.93 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 99.92 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.91 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 99.9 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.89 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.87 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.87 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.79 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.78 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.76 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.69 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 99.68 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.62 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.52 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.52 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.49 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.48 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.44 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.33 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.23 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.19 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.17 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.17 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.06 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 99.01 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.97 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.9 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 98.84 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.82 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 98.82 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.82 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.73 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 98.58 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 98.56 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.52 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 98.51 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.38 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.26 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.26 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.24 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 98.19 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.18 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.13 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 98.1 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.1 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 98.05 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 98.03 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 97.85 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.85 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.66 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.66 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.55 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.53 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 97.5 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 97.42 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.16 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.1 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 97.04 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 96.97 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.81 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.76 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.65 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 96.45 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.44 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 96.19 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 95.82 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.66 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 95.32 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 95.25 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 95.14 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.04 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.33 | |
| smart00367 | 26 | LRR_CC Leucine-rich repeat - CC (cysteine-containi | 91.68 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 90.16 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 89.75 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 89.37 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 87.04 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 82.66 | |
| PF12937 | 47 | F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B | 82.1 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 81.47 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 81.47 | |
| smart00368 | 28 | LRR_RI Leucine rich repeat, ribonuclease inhibitor | 80.42 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=417.32 Aligned_cols=241 Identities=19% Similarity=0.224 Sum_probs=162.6
Q ss_pred HHHHHhhcCCCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHh
Q 003270 63 WQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHA 142 (835)
Q Consensus 63 ~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 142 (835)
..|. ...+.|.|.++.|++.+ +++.|++++ +.+.+..+..+..+++|+.|++++|.+.+.+|..
T Consensus 49 ~~w~-~~~~~c~w~gv~c~~~~--------------~v~~L~L~~-~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~ 112 (968)
T PLN00113 49 SNWN-SSADVCLWQGITCNNSS--------------RVVSIDLSG-KNISGKISSAIFRLPYIQTINLSNNQLSGPIPDD 112 (968)
T ss_pred CCCC-CCCCCCcCcceecCCCC--------------cEEEEEecC-CCccccCChHHhCCCCCCEEECCCCccCCcCChH
Confidence 4684 34568899999986432 799999999 5677777889999999999999999999888876
Q ss_pred hc-CCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccc----ccCCCCCcEEEecccchH----HHhhcCCCC
Q 003270 143 LA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV----SIRCPQLEHLSLKRSNMA----QAVLNCPLL 213 (835)
Q Consensus 143 l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L~l~~~~i~----~~~~~~~~L 213 (835)
+. .+++|++|++++|.+++.+|. ..+++|++|++++|.+... ..++++|++|++++|.+. ..+.++++|
T Consensus 113 ~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 190 (968)
T PLN00113 113 IFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSL 190 (968)
T ss_pred HhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCC
Confidence 55 899999999999999887775 4577888888888776421 234666666666666543 445566666
Q ss_pred cEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEe
Q 003270 214 HLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQ 290 (835)
Q Consensus 214 ~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~ 290 (835)
++|++++|. +. +.+|..++++++|++|++++|. +.+..+..+. .+++|++|++++|. .+|..++.+++|++|+
T Consensus 191 ~~L~L~~n~-l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 266 (968)
T PLN00113 191 EFLTLASNQ-LV-GQIPRELGQMKSLKWIYLGYNN-LSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLF 266 (968)
T ss_pred CeeeccCCC-Cc-CcCChHHcCcCCccEEECcCCc-cCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEE
Confidence 666666653 33 2345556666666666666665 5545555554 56666666666654 3455555566666666
Q ss_pred cCCCCCCChhhHHHhhhccCccEEEccCCCcccccc
Q 003270 291 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 291 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 326 (835)
+++| .+.+..+..+..+++|++|++++|.+.+.+|
T Consensus 267 L~~n-~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p 301 (968)
T PLN00113 267 LYQN-KLSGPIPPSIFSLQKLISLDLSDNSLSGEIP 301 (968)
T ss_pred CcCC-eeeccCchhHhhccCcCEEECcCCeeccCCC
Confidence 6554 4444455555555566666665555444333
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=402.11 Aligned_cols=524 Identities=18% Similarity=0.189 Sum_probs=330.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccc-cCCcccEEeccCcccccc-c-cCCCCCcEEEec
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI-NHDQLRRLEITKCRVMRV-S-IRCPQLEHLSLK 199 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~-~-~~l~~L~~L~l~ 199 (835)
.+++.|++++|.+.+.++.++..+++|++|++++|.+.+.+|..+. .+.+|++|++++|.+... . ..+++|++|+++
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls 148 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLS 148 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCccccCCCCEEECc
Confidence 4789999999999999999999999999999999999888887544 888999999998877532 1 246667777777
Q ss_pred ccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC-
Q 003270 200 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP- 274 (835)
Q Consensus 200 ~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~- 274 (835)
+|.+. ..++++++|++|++++|. +. +.+|..+.++++|++|++++|. +.+..+..+. .+++|+.|++++|.
T Consensus 149 ~n~~~~~~p~~~~~l~~L~~L~L~~n~-l~-~~~p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~L~~n~l 224 (968)
T PLN00113 149 NNMLSGEIPNDIGSFSSLKVLDLGGNV-LV-GKIPNSLTNLTSLEFLTLASNQ-LVGQIPRELG-QMKSLKWIYLGYNNL 224 (968)
T ss_pred CCcccccCChHHhcCCCCCEEECccCc-cc-ccCChhhhhCcCCCeeeccCCC-CcCcCChHHc-CcCCccEEECcCCcc
Confidence 66553 345666666666666663 32 2345556666666666666666 4444444444 55666666666554
Q ss_pred --CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccc
Q 003270 275 --NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMM 352 (835)
Q Consensus 275 --~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~ 352 (835)
.+|..++.+++|++|++.+| .+.+..+..++.+++|++|++++|.+.+.+|..
T Consensus 225 ~~~~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~------------------------ 279 (968)
T PLN00113 225 SGEIPYEIGGLTSLNHLDLVYN-NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS------------------------ 279 (968)
T ss_pred CCcCChhHhcCCCCCEEECcCc-eeccccChhHhCCCCCCEEECcCCeeeccCchh------------------------
Confidence 34444455555555555554 444444444555555555555555443332221
Q ss_pred cceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 353 LSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 353 l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+.++++|++|++++|.+.+..+.... .+++|+.|++++ +.+++..|..+ ..+++|+.|++++|.
T Consensus 280 -----l~~l~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~l~~-n~~~~~~~~~~---~~l~~L~~L~L~~n~ 343 (968)
T PLN00113 280 -----IFSLQKLISLDLSDNSLSGEIPELVI-------QLQNLEILHLFS-NNFTGKIPVAL---TSLPRLQVLQLWSNK 343 (968)
T ss_pred -----HhhccCcCEEECcCCeeccCCChhHc-------CCCCCcEEECCC-CccCCcCChhH---hcCCCCCEEECcCCC
Confidence 23334444455555544443222111 234555555555 34444444433 344555555554443
Q ss_pred CCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEee
Q 003270 433 GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLEL 512 (835)
Q Consensus 433 ~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~ 512 (835)
+. +.+|.. +..+++|+.+++++|.+.
T Consensus 344 -l~--------------------------------------------~~~p~~-----l~~~~~L~~L~Ls~n~l~---- 369 (968)
T PLN00113 344 -FS--------------------------------------------GEIPKN-----LGKHNNLTVLDLSTNNLT---- 369 (968)
T ss_pred -Cc--------------------------------------------CcCChH-----HhCCCCCcEEECCCCeeE----
Confidence 11 112222 455677777777777775
Q ss_pred cCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-
Q 003270 513 KGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN- 591 (835)
Q Consensus 513 ~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~- 591 (835)
+.+|..+..+++|+.|++++|. +. +.++..+..+++|+.|++++|+..+.. +..+..+++|+.|++++|.+++
T Consensus 370 ---~~~p~~~~~~~~L~~L~l~~n~-l~-~~~p~~~~~~~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~ 443 (968)
T PLN00113 370 ---GEIPEGLCSSGNLFKLILFSNS-LE-GEIPKSLGACRSLRRVRLQDNSFSGEL-PSEFTKLPLVYFLDISNNNLQGR 443 (968)
T ss_pred ---eeCChhHhCcCCCCEEECcCCE-ec-ccCCHHHhCCCCCCEEECcCCEeeeEC-ChhHhcCCCCCEEECcCCcccCc
Confidence 6667777777788888888873 32 346666777888888888888765443 6677788888888888888876
Q ss_pred chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCccccc
Q 003270 592 LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNW 671 (835)
Q Consensus 592 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 671 (835)
++..+..+++|+.|++++|+ +.+..+.. ...++|+.|++++|++++ .++..+..+++|++|++++|......
T Consensus 444 ~~~~~~~l~~L~~L~L~~n~-~~~~~p~~----~~~~~L~~L~ls~n~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~~~-- 515 (968)
T PLN00113 444 INSRKWDMPSLQMLSLARNK-FFGGLPDS----FGSKRLENLDLSRNQFSG-AVPRKLGSLSELMQLKLSENKLSGEI-- 515 (968)
T ss_pred cChhhccCCCCcEEECcCce-eeeecCcc----cccccceEEECcCCccCC-ccChhhhhhhccCEEECcCCcceeeC--
Confidence 45566777888888888887 55444433 235678888888888876 56677777888888888887521111
Q ss_pred cccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCC---cccccc
Q 003270 672 GASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSAN---LKEVDV 748 (835)
Q Consensus 672 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~---l~~~~~ 748 (835)
...+..+++|+.|+++++.- ++....
T Consensus 516 ---------------------------------------------------p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 544 (968)
T PLN00113 516 ---------------------------------------------------PDELSSCKKLVSLDLSHNQLSGQIPASFS 544 (968)
T ss_pred ---------------------------------------------------ChHHcCccCCCEEECCCCcccccCChhHh
Confidence 11244556677777766532 223344
Q ss_pred ccccccEEecccccchhhhhh---cCCccceeecccCcCChhHHHHHHhcCCCcceeecccccCCCc
Q 003270 749 ACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICS 812 (835)
Q Consensus 749 ~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~~l~~ 812 (835)
.+++|++|++++|.....+|. .+++|+.|++++|++. ..+|. ...+..+....+.+|+.+|.
T Consensus 545 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~-~~~p~-~~~~~~~~~~~~~~n~~lc~ 609 (968)
T PLN00113 545 EMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLH-GSLPS-TGAFLAINASAVAGNIDLCG 609 (968)
T ss_pred CcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcce-eeCCC-cchhcccChhhhcCCccccC
Confidence 678888899998887666664 4678888999988875 44554 23344556666778777664
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.3e-27 Score=239.11 Aligned_cols=344 Identities=21% Similarity=0.209 Sum_probs=214.5
Q ss_pred CEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEcc
Q 003270 240 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 317 (835)
Q Consensus 240 ~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~ 317 (835)
+.|++++|. +.+..+..+. ++++|+++++.+|. .+|.......+|+.|++..+ .+.......++.++.|+.||++
T Consensus 81 ~~LdlsnNk-l~~id~~~f~-nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~alrslDLS 157 (873)
T KOG4194|consen 81 QTLDLSNNK-LSHIDFEFFY-NLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPALRSLDLS 157 (873)
T ss_pred eeeeccccc-cccCcHHHHh-cCCcceeeeeccchhhhcccccccccceeEEeeecc-ccccccHHHHHhHhhhhhhhhh
Confidence 346666666 5555555554 66677777776665 56666666667888888775 6776666778888889999998
Q ss_pred CCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccE
Q 003270 318 NCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQE 397 (835)
Q Consensus 318 ~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~ 397 (835)
.|.+....-.. +..-.++++|++++|.++.+....++++ .+|..
T Consensus 158 rN~is~i~~~s-----------------------------fp~~~ni~~L~La~N~It~l~~~~F~~l-------nsL~t 201 (873)
T KOG4194|consen 158 RNLISEIPKPS-----------------------------FPAKVNIKKLNLASNRITTLETGHFDSL-------NSLLT 201 (873)
T ss_pred hchhhcccCCC-----------------------------CCCCCCceEEeecccccccccccccccc-------chhee
Confidence 88643321111 2333456666666666666544444333 46666
Q ss_pred EecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcc
Q 003270 398 VDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIE 477 (835)
Q Consensus 398 L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~ 477 (835)
|.++. |+++...+..| ..+++|+.|++..+. +..+ +.+.+.++++++.+.+.-+.+..|+=.-
T Consensus 202 lkLsr-NrittLp~r~F---k~L~~L~~LdLnrN~-iriv-------e~ltFqgL~Sl~nlklqrN~I~kL~DG~----- 264 (873)
T KOG4194|consen 202 LKLSR-NRITTLPQRSF---KRLPKLESLDLNRNR-IRIV-------EGLTFQGLPSLQNLKLQRNDISKLDDGA----- 264 (873)
T ss_pred eeccc-CcccccCHHHh---hhcchhhhhhccccc-eeee-------hhhhhcCchhhhhhhhhhcCcccccCcc-----
Confidence 77777 56666655555 566777777776654 3322 1233444444444433333332222111
Q ss_pred ccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEE
Q 003270 478 SASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESL 557 (835)
Q Consensus 478 ~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L 557 (835)
|..|.+++.++++.|++. ..-..++-++++|+.|++|+| .+.. .-...+..++.|++|
T Consensus 265 -------------Fy~l~kme~l~L~~N~l~-------~vn~g~lfgLt~L~~L~lS~N-aI~r-ih~d~WsftqkL~~L 322 (873)
T KOG4194|consen 265 -------------FYGLEKMEHLNLETNRLQ-------AVNEGWLFGLTSLEQLDLSYN-AIQR-IHIDSWSFTQKLKEL 322 (873)
T ss_pred -------------eeeecccceeecccchhh-------hhhcccccccchhhhhccchh-hhhe-eecchhhhcccceeE
Confidence 566677777777777764 222233456777777777776 3322 112335566777777
Q ss_pred eccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCC
Q 003270 558 ILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLS 636 (835)
Q Consensus 558 ~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~ 636 (835)
++++|+..... +.+|..+..|++|.|+.|.+..+.+ .|..+++|++|+|++|. +...+...-..+..+++|+.|++.
T Consensus 323 dLs~N~i~~l~-~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~-ls~~IEDaa~~f~gl~~LrkL~l~ 400 (873)
T KOG4194|consen 323 DLSSNRITRLD-EGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNE-LSWCIEDAAVAFNGLPSLRKLRLT 400 (873)
T ss_pred eccccccccCC-hhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCe-EEEEEecchhhhccchhhhheeec
Confidence 77777655443 5677788888888888888887665 67778888888888877 554333332334668888888888
Q ss_pred CcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 637 YGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 637 ~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+|++.. .....|.++..|++|++.+|+
T Consensus 401 gNqlk~-I~krAfsgl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 401 GNQLKS-IPKRAFSGLEALEHLDLGDNA 427 (873)
T ss_pred Cceeee-cchhhhccCcccceecCCCCc
Confidence 888766 455778888888888888876
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-26 Score=234.20 Aligned_cols=359 Identities=19% Similarity=0.219 Sum_probs=195.5
Q ss_pred CCcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcE
Q 003270 192 QLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRI 267 (835)
Q Consensus 192 ~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~ 267 (835)
.-+.|++++|.+. ..+.++++|+++++..| .++ .+|...+...+|+.|+|.+|. ++...-.++. .++.|+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N-~Lt--~IP~f~~~sghl~~L~L~~N~-I~sv~se~L~-~l~alrs 153 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKN-ELT--RIPRFGHESGHLEKLDLRHNL-ISSVTSEELS-ALPALRS 153 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccc-hhh--hcccccccccceeEEeeeccc-cccccHHHHH-hHhhhhh
Confidence 3455777777665 56789999999999988 465 577776777789999999998 7766566665 7889999
Q ss_pred EecCCCC--CCCcc-ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeecccccccc
Q 003270 268 LNSSYCP--NISLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFA 344 (835)
Q Consensus 268 L~l~~~~--~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~ 344 (835)
|||+.|. .++.. +..-.++++|++.++ .++......|..+.+|..|.+++|.+..-.+..|
T Consensus 154 lDLSrN~is~i~~~sfp~~~ni~~L~La~N-~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~F--------------- 217 (873)
T KOG4194|consen 154 LDLSRNLISEIPKPSFPAKVNIKKLNLASN-RITTLETGHFDSLNSLLTLKLSRNRITTLPQRSF--------------- 217 (873)
T ss_pred hhhhhchhhcccCCCCCCCCCceEEeeccc-cccccccccccccchheeeecccCcccccCHHHh---------------
Confidence 9999986 45543 334478888888886 7877777778888888888888887544333222
Q ss_pred chhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCcc
Q 003270 345 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLK 424 (835)
Q Consensus 345 ~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~ 424 (835)
+++++|+.|++..|.+.-.....+.+ +++|+.|.+.. |.+......+| .++.+++
T Consensus 218 --------------k~L~~L~~LdLnrN~irive~ltFqg-------L~Sl~nlklqr-N~I~kL~DG~F---y~l~kme 272 (873)
T KOG4194|consen 218 --------------KRLPKLESLDLNRNRIRIVEGLTFQG-------LPSLQNLKLQR-NDISKLDDGAF---YGLEKME 272 (873)
T ss_pred --------------hhcchhhhhhccccceeeehhhhhcC-------chhhhhhhhhh-cCcccccCcce---eeecccc
Confidence 23333333333333332221111111 13444444444 23332222233 3444445
Q ss_pred EEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCccccccc
Q 003270 425 SLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 504 (835)
Q Consensus 425 ~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~ 504 (835)
.|++..+. +..+ .+-.+.|+..|+.+.++.+.++.+.++. ++.|++|+.|++++
T Consensus 273 ~l~L~~N~-l~~v-------n~g~lfgLt~L~~L~lS~NaI~rih~d~------------------WsftqkL~~LdLs~ 326 (873)
T KOG4194|consen 273 HLNLETNR-LQAV-------NEGWLFGLTSLEQLDLSYNAIQRIHIDS------------------WSFTQKLKELDLSS 326 (873)
T ss_pred eeecccch-hhhh-------hcccccccchhhhhccchhhhheeecch------------------hhhcccceeEeccc
Confidence 55444443 2211 1111222223333333333333333333 45555666666666
Q ss_pred ceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCc--hhhHhhhhcccccee
Q 003270 505 LHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGP--DGLYSLRSLQNLTML 582 (835)
Q Consensus 505 ~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~l~~L~~L 582 (835)
|+++.+ -+..|..+..|++|.+++|. +. .-....|.++.+|+.|++++|....- .+...|.++++|+.|
T Consensus 327 N~i~~l-------~~~sf~~L~~Le~LnLs~Ns-i~-~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL 397 (873)
T KOG4194|consen 327 NRITRL-------DEGSFRVLSQLEELNLSHNS-ID-HLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL 397 (873)
T ss_pred cccccC-------ChhHHHHHHHhhhhcccccc-hH-HHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence 655421 22344555556666666652 21 11223344555566666655553221 112345555666666
Q ss_pred eecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCC
Q 003270 583 DLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLS 636 (835)
Q Consensus 583 ~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~ 636 (835)
++.+|++..+|. +|.+++.|+.|+|.+|. |..+.+..+ ..+ .|++|.+.
T Consensus 398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~Na-iaSIq~nAF---e~m-~Lk~Lv~n 447 (873)
T KOG4194|consen 398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNA-IASIQPNAF---EPM-ELKELVMN 447 (873)
T ss_pred eecCceeeecchhhhccCcccceecCCCCc-ceeeccccc---ccc-hhhhhhhc
Confidence 666666655554 55556666666666655 554444433 333 55555443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.4e-28 Score=234.33 Aligned_cols=450 Identities=20% Similarity=0.203 Sum_probs=253.0
Q ss_pred hcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCccc
Q 003270 95 QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLR 174 (835)
Q Consensus 95 ~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 174 (835)
+..+.++.+++++ +... ..|++++.+..++.++.++|++. .+|++++...+|+.++.++|.+. .+++.++.+..++
T Consensus 65 ~nL~~l~vl~~~~-n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~ 140 (565)
T KOG0472|consen 65 KNLACLTVLNVHD-NKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLE 140 (565)
T ss_pred hcccceeEEEecc-chhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhh
Confidence 3444555555555 2222 24455555555555555555555 34555555555555555555543 2333344444444
Q ss_pred EEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHH
Q 003270 175 RLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254 (835)
Q Consensus 175 ~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~ 254 (835)
.++..+|++.... +.+.++.+|..+++.+| .++ ++|...-+++.|++||...|- ++ ..
T Consensus 141 dl~~~~N~i~slp-----------------~~~~~~~~l~~l~~~~n-~l~--~l~~~~i~m~~L~~ld~~~N~-L~-tl 198 (565)
T KOG0472|consen 141 DLDATNNQISSLP-----------------EDMVNLSKLSKLDLEGN-KLK--ALPENHIAMKRLKHLDCNSNL-LE-TL 198 (565)
T ss_pred hhhccccccccCc-----------------hHHHHHHHHHHhhcccc-chh--hCCHHHHHHHHHHhcccchhh-hh-cC
Confidence 4444444443322 45555555666666665 233 233333335666666665554 32 44
Q ss_pred HHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhh-hccCccEEEccCCCccccccccCcc
Q 003270 255 LREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSVSLELPR 331 (835)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~ 331 (835)
|+.++ .+.+|..|++..|. .+| .+..|.-|++|+++.+ .....+.+.. ++.++..||+.+|+ ..+.|.++..
T Consensus 199 P~~lg-~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N--~i~~lpae~~~~L~~l~vLDLRdNk-lke~Pde~cl 273 (565)
T KOG0472|consen 199 PPELG-GLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGEN--QIEMLPAEHLKHLNSLLVLDLRDNK-LKEVPDEICL 273 (565)
T ss_pred Chhhc-chhhhHHHHhhhcccccCC-CCCccHHHHHHHhccc--HHHhhHHHHhcccccceeeeccccc-cccCchHHHH
Confidence 55555 56666666666665 344 5566666666666653 2233333433 56666666666665 3445554433
Q ss_pred cceeeccccccccchhhccccccee--eeccCCCcceeeeccCccccchhh-----cchhhHHHHhhCCcccEEecCCCc
Q 003270 332 LQNIRLVHCRKFADLNLRAMMLSSI--MVSNCAALHRINITSNSLQKLSLQ-----KQENLTSLALQCQCLQEVDLTDCE 404 (835)
Q Consensus 332 L~~L~~~~~~~l~~l~l~~~~l~~~--~l~~~~~L~~L~l~~n~l~~~~~~-----~~~~l~~l~~~~~~L~~L~l~~c~ 404 (835)
+++ ++.++++.|.++++ .++++ .|+.|.+.+|.+....-. +..-++++. .
T Consensus 274 Lrs--------L~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLr-------s------- 330 (565)
T KOG0472|consen 274 LRS--------LERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLR-------S------- 330 (565)
T ss_pred hhh--------hhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHH-------H-------
Confidence 332 23345555555554 56666 677777777766543211 011111111 1
Q ss_pred CCchhhhh---------------hccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEe
Q 003270 405 SLTNSVCE---------------VFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVC 469 (835)
Q Consensus 405 ~l~~~~~~---------------~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~ 469 (835)
.+++.++. .+++....-+.+.|++++-. ++
T Consensus 331 ~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~q-lt---------------------------------- 375 (565)
T KOG0472|consen 331 KIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQ-LT---------------------------------- 375 (565)
T ss_pred hhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccc-cc----------------------------------
Confidence 11111111 11111111122222222211 11
Q ss_pred cCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcce-EecccCCCCccchhhhhh
Q 003270 470 LDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTS-LDASFCSQLKDDCLSATT 548 (835)
Q Consensus 470 l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~-L~ls~~~~l~~~~~~~~~ 548 (835)
.+|..+ .....-.-.+.++++.|++ .++|..+..+..+.. +.+++| .+ ++++..+
T Consensus 376 -----------~VPdEV--fea~~~~~Vt~VnfskNqL--------~elPk~L~~lkelvT~l~lsnn-~i--sfv~~~l 431 (565)
T KOG0472|consen 376 -----------LVPDEV--FEAAKSEIVTSVNFSKNQL--------CELPKRLVELKELVTDLVLSNN-KI--SFVPLEL 431 (565)
T ss_pred -----------cCCHHH--HHHhhhcceEEEecccchH--------hhhhhhhHHHHHHHHHHHhhcC-cc--ccchHHH
Confidence 112110 0011112245566666766 556665555555444 455554 33 4567777
Q ss_pred hcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCC
Q 003270 549 TSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 628 (835)
Q Consensus 549 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 628 (835)
..+++|..|++++|..-+. |..++.+..|+.|+++.|++..+|..+.....++.+-.++|+ +....+..+ .++.
T Consensus 432 ~~l~kLt~L~L~NN~Ln~L--P~e~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nq-i~~vd~~~l---~nm~ 505 (565)
T KOG0472|consen 432 SQLQKLTFLDLSNNLLNDL--PEEMGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQ-IGSVDPSGL---KNMR 505 (565)
T ss_pred Hhhhcceeeecccchhhhc--chhhhhhhhhheecccccccccchHHHhhHHHHHHHHhcccc-ccccChHHh---hhhh
Confidence 8888888888888764332 778888888999999999999999988888888888888888 888777755 7899
Q ss_pred CccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 629 ALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 629 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
+|..||+.+|.+.. +|..+++|++|++|++.||+.
T Consensus 506 nL~tLDL~nNdlq~--IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQ--IPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred hcceeccCCCchhh--CChhhccccceeEEEecCCcc
Confidence 99999999999864 889999999999999999984
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.2e-27 Score=228.30 Aligned_cols=452 Identities=18% Similarity=0.210 Sum_probs=253.8
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc---CCCCCcEEEec
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEHLSLK 199 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~l~~L~~L~l~ 199 (835)
..|..+.+++|.+.. +...+.++..|.++++.+|++. .+|..++.+..++.+++++|++..+.. ..++|..++.+
T Consensus 45 v~l~~lils~N~l~~-l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 45 VDLQKLILSHNDLEV-LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCS 122 (565)
T ss_pred cchhhhhhccCchhh-ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcc
Confidence 345666777776653 3335566777777777777764 455666666667777777666655432 34444455555
Q ss_pred ccchH---HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCC
Q 003270 200 RSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 276 (835)
Q Consensus 200 ~~~i~---~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 276 (835)
+|.+. +.++.+..|..++..+| ++. ++|..+.++.+|..+++.+|. +..- +.... +++.|++||...|
T Consensus 123 ~n~~~el~~~i~~~~~l~dl~~~~N-~i~--slp~~~~~~~~l~~l~~~~n~-l~~l-~~~~i-~m~~L~~ld~~~N--- 193 (565)
T KOG0472|consen 123 SNELKELPDSIGRLLDLEDLDATNN-QIS--SLPEDMVNLSKLSKLDLEGNK-LKAL-PENHI-AMKRLKHLDCNSN--- 193 (565)
T ss_pred ccceeecCchHHHHhhhhhhhcccc-ccc--cCchHHHHHHHHHHhhccccc-hhhC-CHHHH-HHHHHHhcccchh---
Confidence 44433 44555555666655555 333 345555555666666666655 3322 22222 3455555555444
Q ss_pred CccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee
Q 003270 277 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI 356 (835)
Q Consensus 277 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~ 356 (835)
.-+..|+.++.+.+|+.|++..|.+. .+| .+.+|+.+.++.+..|.++.+
T Consensus 194 --------------------~L~tlP~~lg~l~~L~~LyL~~Nki~-~lP---------ef~gcs~L~Elh~g~N~i~~l 243 (565)
T KOG0472|consen 194 --------------------LLETLPPELGGLESLELLYLRRNKIR-FLP---------EFPGCSLLKELHVGENQIEML 243 (565)
T ss_pred --------------------hhhcCChhhcchhhhHHHHhhhcccc-cCC---------CCCccHHHHHHHhcccHHHhh
Confidence 34444455555555555555555421 112 233455555555555555444
Q ss_pred ---eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCC
Q 003270 357 ---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEG 433 (835)
Q Consensus 357 ---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~ 433 (835)
..++++.+..|++.+|++..+... +. .+.+|++||+++ |.|++.. ..+ +++ .|+.|.+.|++
T Consensus 244 pae~~~~L~~l~vLDLRdNklke~Pde----~c----lLrsL~rLDlSN-N~is~Lp-~sL---gnl-hL~~L~leGNP- 308 (565)
T KOG0472|consen 244 PAEHLKHLNSLLVLDLRDNKLKEVPDE----IC----LLRSLERLDLSN-NDISSLP-YSL---GNL-HLKFLALEGNP- 308 (565)
T ss_pred HHHHhcccccceeeeccccccccCchH----HH----HhhhhhhhcccC-CccccCC-ccc---ccc-eeeehhhcCCc-
Confidence 345677778888888888765322 21 235788888888 5776542 233 566 78888888876
Q ss_pred CccccccCCcceEEeccCCc---ccccccc--cC---CCCcEEecCCCCCccccccccccccccccCcCCCCcccccccc
Q 003270 434 LTVVRFCSTSLVSLSLVGCR---AITALEL--KC---PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEAL 505 (835)
Q Consensus 434 l~~~~~~~~~l~~l~l~~~~---~l~~l~~--~~---~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~ 505 (835)
+..+.- ++..+. -++.+.. .+ .+-+.=........ .+..| +.......+.++++.-
T Consensus 309 lrTiRr--------~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~--~~~~~------~~~~~i~tkiL~~s~~ 372 (565)
T KOG0472|consen 309 LRTIRR--------EIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLP--SESFP------DIYAIITTKILDVSDK 372 (565)
T ss_pred hHHHHH--------HHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCC--CCccc------chhhhhhhhhhccccc
Confidence 433311 000000 0111100 00 00000000000000 00111 1334455666777766
Q ss_pred eeEEEeecCCcccccccccCCC---cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhcccccee
Q 003270 506 HMVVLELKGCGVLSDAYINCPL---LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTML 582 (835)
Q Consensus 506 ~l~~l~~~~~~~l~~~~~~~~~---L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 582 (835)
++ ..+|+.....-. ...++++.| ++.+ +|..+..+..+.+.-+..++.++.. +..+..+++|..|
T Consensus 373 ql--------t~VPdEVfea~~~~~Vt~VnfskN-qL~e--lPk~L~~lkelvT~l~lsnn~isfv-~~~l~~l~kLt~L 440 (565)
T KOG0472|consen 373 QL--------TLVPDEVFEAAKSEIVTSVNFSKN-QLCE--LPKRLVELKELVTDLVLSNNKISFV-PLELSQLQKLTFL 440 (565)
T ss_pred cc--------ccCCHHHHHHhhhcceEEEecccc-hHhh--hhhhhHHHHHHHHHHHhhcCccccc-hHHHHhhhcceee
Confidence 66 566765433322 677888887 4533 6666655555555555555545544 5677888888888
Q ss_pred eecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 583 DLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 583 ~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
++++|.+.++|..++.+..|+.|+++.|. +... |..+ ..+..++.+-.++|++.. .-+..+..+.+|++|++.+
T Consensus 441 ~L~NN~Ln~LP~e~~~lv~Lq~LnlS~Nr-Fr~l-P~~~---y~lq~lEtllas~nqi~~-vd~~~l~nm~nL~tLDL~n 514 (565)
T KOG0472|consen 441 DLSNNLLNDLPEEMGSLVRLQTLNLSFNR-FRML-PECL---YELQTLETLLASNNQIGS-VDPSGLKNMRNLTTLDLQN 514 (565)
T ss_pred ecccchhhhcchhhhhhhhhheecccccc-cccc-hHHH---hhHHHHHHHHhccccccc-cChHHhhhhhhcceeccCC
Confidence 88888888888888888888888888886 5533 3332 334566777777788876 3445678888888888888
Q ss_pred CC
Q 003270 663 CG 664 (835)
Q Consensus 663 ~~ 664 (835)
|.
T Consensus 515 Nd 516 (565)
T KOG0472|consen 515 ND 516 (565)
T ss_pred Cc
Confidence 75
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.6e-25 Score=229.69 Aligned_cols=367 Identities=20% Similarity=0.197 Sum_probs=248.6
Q ss_pred CCCeeEEEccCCcchh-hHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccE
Q 003270 97 YPNATEVNIYGAPAIH-LLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRR 175 (835)
Q Consensus 97 ~~~l~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 175 (835)
.|.++-+|+++ +.+. +..|.....+++++.|.+.+.++. .+|+.++.+.+|++|.+++|++.. +...+..+++||.
T Consensus 6 LpFVrGvDfsg-NDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~~-vhGELs~Lp~LRs 82 (1255)
T KOG0444|consen 6 LPFVRGVDFSG-NDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLIS-VHGELSDLPRLRS 82 (1255)
T ss_pred cceeecccccC-CcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhHh-hhhhhccchhhHH
Confidence 46678888888 4555 567788888888888888877776 468888888888888888887642 3334455666666
Q ss_pred EeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHH
Q 003270 176 LEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL 255 (835)
Q Consensus 176 L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~ 255 (835)
+.+.+|++.. .+|+..+-.+..|..|++++| +++ ..|..+...+++-+|+|++|. +. .+|
T Consensus 83 v~~R~N~LKn---------------sGiP~diF~l~dLt~lDLShN-qL~--EvP~~LE~AKn~iVLNLS~N~-Ie-tIP 142 (1255)
T KOG0444|consen 83 VIVRDNNLKN---------------SGIPTDIFRLKDLTILDLSHN-QLR--EVPTNLEYAKNSIVLNLSYNN-IE-TIP 142 (1255)
T ss_pred Hhhhcccccc---------------CCCCchhcccccceeeecchh-hhh--hcchhhhhhcCcEEEEcccCc-cc-cCC
Confidence 6666554432 234455666777777777776 454 456667777777777777776 44 445
Q ss_pred HHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcc-ccccccCccc
Q 003270 256 REIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL-TSVSLELPRL 332 (835)
Q Consensus 256 ~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~~~L 332 (835)
..+.-+++.|-.||+++|. .+|+.+..+.+|++|+++++ .+.......+..+++|+.|.+++.+-. ..+|.
T Consensus 143 n~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~N-PL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Pt----- 216 (1255)
T KOG0444|consen 143 NSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNN-PLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPT----- 216 (1255)
T ss_pred chHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCC-hhhHHHHhcCccchhhhhhhcccccchhhcCCC-----
Confidence 5544477777777777776 56666666666666666664 444444444555555555555543311 00110
Q ss_pred ceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhh
Q 003270 333 QNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCE 412 (835)
Q Consensus 333 ~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~ 412 (835)
.+. .+.+|..+|++. |++.. .|+
T Consensus 217 ------------------------sld-------------------------------~l~NL~dvDlS~-N~Lp~-vPe 239 (1255)
T KOG0444|consen 217 ------------------------SLD-------------------------------DLHNLRDVDLSE-NNLPI-VPE 239 (1255)
T ss_pred ------------------------chh-------------------------------hhhhhhhccccc-cCCCc-chH
Confidence 011 124666667766 45543 244
Q ss_pred hccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccC
Q 003270 413 VFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLG 492 (835)
Q Consensus 413 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~ 492 (835)
.+ ..+++|+.|+++++. ++.+ .+ ...
T Consensus 240 cl---y~l~~LrrLNLS~N~-iteL-------------------------------~~-------------------~~~ 265 (1255)
T KOG0444|consen 240 CL---YKLRNLRRLNLSGNK-ITEL-------------------------------NM-------------------TEG 265 (1255)
T ss_pred HH---hhhhhhheeccCcCc-eeee-------------------------------ec-------------------cHH
Confidence 44 667778888877765 3322 10 023
Q ss_pred cCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHh
Q 003270 493 ICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYS 572 (835)
Q Consensus 493 ~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 572 (835)
.-.+|+.|+++.|++ ..+|+.+..+++|+.|.+.+| +++-+++|+.++.+.+|+.+...+|..- . .|+.
T Consensus 266 ~W~~lEtLNlSrNQL--------t~LP~avcKL~kL~kLy~n~N-kL~FeGiPSGIGKL~~Levf~aanN~LE-l-VPEg 334 (1255)
T KOG0444|consen 266 EWENLETLNLSRNQL--------TVLPDAVCKLTKLTKLYANNN-KLTFEGIPSGIGKLIQLEVFHAANNKLE-L-VPEG 334 (1255)
T ss_pred HHhhhhhhccccchh--------ccchHHHhhhHHHHHHHhccC-cccccCCccchhhhhhhHHHHhhccccc-c-Cchh
Confidence 335677788888888 677888888888999888887 6777788888888888988888887632 2 2788
Q ss_pred hhhccccceeeecCccccCchHHHhccccccEEecccccccc
Q 003270 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 573 ~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 614 (835)
+..|..|+.|.|+.|++..+|+++.-++.|+.|++..|+++-
T Consensus 335 lcRC~kL~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 335 LCRCVKLQKLKLDHNRLITLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhhhHHHHHhcccccceeechhhhhhcCCcceeeccCCcCcc
Confidence 889999999999999999899999999999999999988663
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.5e-24 Score=222.78 Aligned_cols=130 Identities=19% Similarity=0.265 Sum_probs=83.8
Q ss_pred CcCcEEEcCCcccC-hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEeccc
Q 003270 123 RNLEALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~ 201 (835)
+-.+-.|+++|.++ +.+|..+..+++++-|.+....+ ..+|+.++.+.+|++|++.+|++..+.
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~vh-------------- 71 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISVH-------------- 71 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhhh--------------
Confidence 33455666666666 34666666666666666666554 345555555555555555444443222
Q ss_pred chHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC
Q 003270 202 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP 274 (835)
Q Consensus 202 ~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~ 274 (835)
..++.+|.||.+.+..| ++...++|..+..+..|+.|||+.|+ +. +.|..+. +..++-.|++++|.
T Consensus 72 ---GELs~Lp~LRsv~~R~N-~LKnsGiP~diF~l~dLt~lDLShNq-L~-EvP~~LE-~AKn~iVLNLS~N~ 137 (1255)
T KOG0444|consen 72 ---GELSDLPRLRSVIVRDN-NLKNSGIPTDIFRLKDLTILDLSHNQ-LR-EVPTNLE-YAKNSIVLNLSYNN 137 (1255)
T ss_pred ---hhhccchhhHHHhhhcc-ccccCCCCchhcccccceeeecchhh-hh-hcchhhh-hhcCcEEEEcccCc
Confidence 45667788888888887 57777888888888899999999888 54 4455554 55666777777763
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-24 Score=231.15 Aligned_cols=451 Identities=20% Similarity=0.215 Sum_probs=232.7
Q ss_pred HHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCc
Q 003270 115 VMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLE 194 (835)
Q Consensus 115 ~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~ 194 (835)
+|.-+.....+..|++..|.+-..-.+.+.++-+|+.|++++|.+. .+|..+..+..|+.|.++.|.+....
T Consensus 13 ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp------- 84 (1081)
T KOG0618|consen 13 IPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP------- 84 (1081)
T ss_pred cchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-------
Confidence 4444444444777777777554322334445555888888887763 45555555666666666666554433
Q ss_pred EEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCC-
Q 003270 195 HLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC- 273 (835)
Q Consensus 195 ~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~- 273 (835)
....++.+|++|.|.+|. +. .+|..+..+++|++|++++|. +. ..|.-+. .++.++.+..++|
T Consensus 85 ----------~s~~~~~~l~~lnL~~n~-l~--~lP~~~~~lknl~~LdlS~N~-f~-~~Pl~i~-~lt~~~~~~~s~N~ 148 (1081)
T KOG0618|consen 85 ----------SSCSNMRNLQYLNLKNNR-LQ--SLPASISELKNLQYLDLSFNH-FG-PIPLVIE-VLTAEEELAASNNE 148 (1081)
T ss_pred ----------hhhhhhhcchhheeccch-hh--cCchhHHhhhcccccccchhc-cC-CCchhHH-hhhHHHHHhhhcch
Confidence 233444455555555542 22 345555555555555555554 22 1122221 3444444444444
Q ss_pred ------------------C---CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCccc
Q 003270 274 ------------------P---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRL 332 (835)
Q Consensus 274 ------------------~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L 332 (835)
. .++.++..+.. .|+++++ .+. ...+..+.+|+.|....+++. .+-..-+++
T Consensus 149 ~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N-~~~---~~dls~~~~l~~l~c~rn~ls-~l~~~g~~l 221 (1081)
T KOG0618|consen 149 KIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYN-EME---VLDLSNLANLEVLHCERNQLS-ELEISGPSL 221 (1081)
T ss_pred hhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccc-hhh---hhhhhhccchhhhhhhhcccc-eEEecCcch
Confidence 2 12222222222 3444443 222 122333334444433333211 111112333
Q ss_pred ceeeccccccccchhhccccccee-eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhh
Q 003270 333 QNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 411 (835)
Q Consensus 333 ~~L~~~~~~~l~~l~l~~~~l~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~ 411 (835)
+.|...+++ +..+ .-.--.+++++++++|.+++.. .+...|.+|+.++... |.++.. |
T Consensus 222 ~~L~a~~n~-----------l~~~~~~p~p~nl~~~dis~n~l~~lp--------~wi~~~~nle~l~~n~-N~l~~l-p 280 (1081)
T KOG0618|consen 222 TALYADHNP-----------LTTLDVHPVPLNLQYLDISHNNLSNLP--------EWIGACANLEALNANH-NRLVAL-P 280 (1081)
T ss_pred heeeeccCc-----------ceeeccccccccceeeecchhhhhcch--------HHHHhcccceEecccc-hhHHhh-H
Confidence 333333322 2211 1112235566666666665432 2222456666666666 455322 2
Q ss_pred hhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccccccccccccc
Q 003270 412 EVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL 491 (835)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l 491 (835)
..+ ....+|+.|.+..|. +..++.... ....|++|++..+. +. -+|.. .+
T Consensus 281 ~ri---~~~~~L~~l~~~~ne-l~yip~~le------------------~~~sL~tLdL~~N~-L~---~lp~~----~l 330 (1081)
T KOG0618|consen 281 LRI---SRITSLVSLSAAYNE-LEYIPPFLE------------------GLKSLRTLDLQSNN-LP---SLPDN----FL 330 (1081)
T ss_pred HHH---hhhhhHHHHHhhhhh-hhhCCCccc------------------ccceeeeeeehhcc-cc---ccchH----HH
Confidence 222 344555555555554 444432211 13334444443321 11 11111 01
Q ss_pred CcCCC-CcccccccceeEEEeecCCccccc-ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchh
Q 003270 492 GICPK-LSTLGIEALHMVVLELKGCGVLSD-AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG 569 (835)
Q Consensus 492 ~~~~~-L~~l~l~~~~l~~l~~~~~~~l~~-~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 569 (835)
.-... ++.+..+.|.+. ..|. .=..++.|+.|.+-+| .++|..+|. +.+++.|+.|++++|+.....
T Consensus 331 ~v~~~~l~~ln~s~n~l~--------~lp~~~e~~~~~Lq~LylanN-~Ltd~c~p~-l~~~~hLKVLhLsyNrL~~fp- 399 (1081)
T KOG0618|consen 331 AVLNASLNTLNVSSNKLS--------TLPSYEENNHAALQELYLANN-HLTDSCFPV-LVNFKHLKVLHLSYNRLNSFP- 399 (1081)
T ss_pred hhhhHHHHHHhhhhcccc--------ccccccchhhHHHHHHHHhcC-cccccchhh-hccccceeeeeecccccccCC-
Confidence 11111 344444555442 2221 1124567888888887 677776664 667888888888888744322
Q ss_pred hHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 570 LYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 570 ~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
...+.+++.|++|+||+|.+..+|..+..|+.|++|...+|. +... | . +..+++|+.+|++.|+++...+++..
T Consensus 400 as~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~-l~~f-P-e---~~~l~qL~~lDlS~N~L~~~~l~~~~ 473 (1081)
T KOG0618|consen 400 ASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQ-LLSF-P-E---LAQLPQLKVLDLSCNNLSEVTLPEAL 473 (1081)
T ss_pred HHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCc-eeec-h-h---hhhcCcceEEecccchhhhhhhhhhC
Confidence 456778888888888888888888888888888888888877 4432 2 2 36688888888888888775555443
Q ss_pred hhCCCccEEEccCCCC
Q 003270 650 AYCTHLTHVSLNGCGN 665 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~ 665 (835)
. .++|++|+++||..
T Consensus 474 p-~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 474 P-SPNLKYLDLSGNTR 488 (1081)
T ss_pred C-CcccceeeccCCcc
Confidence 2 37888888888874
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-24 Score=232.66 Aligned_cols=245 Identities=18% Similarity=0.190 Sum_probs=148.1
Q ss_pred EEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccchH---
Q 003270 128 LTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA--- 204 (835)
Q Consensus 128 L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~--- 204 (835)
+|++...+. .+|..+..-..+..|+++.|.+-...-+.+.+.-+ |++|++++|.+.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~--------------------L~~l~lsnn~~~~fp 61 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVK--------------------LKSLDLSNNQISSFP 61 (1081)
T ss_pred cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheee--------------------eEEeeccccccccCC
Confidence 344444443 34444433333667777776554322233333333 555555555443
Q ss_pred HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccC
Q 003270 205 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVR 282 (835)
Q Consensus 205 ~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~ 282 (835)
..+..+.+|+.|+++.| .+. .+|....++.+|+++.|.+|. +. ..|..+. .+.+|+.|++++|. .+|..+..
T Consensus 62 ~~it~l~~L~~ln~s~n-~i~--~vp~s~~~~~~l~~lnL~~n~-l~-~lP~~~~-~lknl~~LdlS~N~f~~~Pl~i~~ 135 (1081)
T KOG0618|consen 62 IQITLLSHLRQLNLSRN-YIR--SVPSSCSNMRNLQYLNLKNNR-LQ-SLPASIS-ELKNLQYLDLSFNHFGPIPLVIEV 135 (1081)
T ss_pred chhhhHHHHhhcccchh-hHh--hCchhhhhhhcchhheeccch-hh-cCchhHH-hhhcccccccchhccCCCchhHHh
Confidence 44566778888888887 344 467778889999999999997 43 4455555 78899999999987 67777777
Q ss_pred CCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCC
Q 003270 283 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCA 362 (835)
Q Consensus 283 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~ 362 (835)
+..++.+..+++. ....++... ++++++..+...+.++.+...+++ .+++.+|.+....+.+++
T Consensus 136 lt~~~~~~~s~N~-----~~~~lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~----------~ldLr~N~~~~~dls~~~ 199 (1081)
T KOG0618|consen 136 LTAEEELAASNNE-----KIQRLGQTS-IKKLDLRLNVLGGSFLIDIYNLTH----------QLDLRYNEMEVLDLSNLA 199 (1081)
T ss_pred hhHHHHHhhhcch-----hhhhhcccc-chhhhhhhhhcccchhcchhhhhe----------eeecccchhhhhhhhhcc
Confidence 7777777777641 112233333 778888888877777766666555 135555655544677778
Q ss_pred CcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 363 ALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 363 ~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+|+.+....|++...... -++++.|+...| .++...+. ....+|++++++.+.
T Consensus 200 ~l~~l~c~rn~ls~l~~~-----------g~~l~~L~a~~n-~l~~~~~~-----p~p~nl~~~dis~n~ 252 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEIS-----------GPSLTALYADHN-PLTTLDVH-----PVPLNLQYLDISHNN 252 (1081)
T ss_pred chhhhhhhhcccceEEec-----------CcchheeeeccC-cceeeccc-----cccccceeeecchhh
Confidence 888777776666543322 256677776663 44421111 223456666665543
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.6e-18 Score=210.48 Aligned_cols=342 Identities=20% Similarity=0.247 Sum_probs=206.5
Q ss_pred hHHhhcCCCCCCEEEecCCCCC------cccccccccC-CcccEEeccCcccccccc--CCCCCcEEEecccchH---HH
Q 003270 139 FFHALADCSMLKSLNVNDATLG------NGVQEIPINH-DQLRRLEITKCRVMRVSI--RCPQLEHLSLKRSNMA---QA 206 (835)
Q Consensus 139 ~~~~l~~~~~L~~L~l~~~~~~------~~~~~~~~~l-~~L~~L~l~~~~~~~~~~--~l~~L~~L~l~~~~i~---~~ 206 (835)
.+.+|.++++|+.|.+..+... ..+|..+..+ .+|+.|.+.++.+..++. ...+|++|+++++.+. ..
T Consensus 550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f~~~~L~~L~L~~s~l~~L~~~ 629 (1153)
T PLN03210 550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNFRPENLVKLQMQGSKLEKLWDG 629 (1153)
T ss_pred cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcCCccCCcEEECcCccccccccc
Confidence 3456777888888888655321 2344444444 457888887777665543 3567777777777665 33
Q ss_pred hhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCC
Q 003270 207 VLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRL 283 (835)
Q Consensus 207 ~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~ 283 (835)
+..+++|+.|+++++..+. .+| .+..+++|++|++++|..+. ..|..+. ++++|+.|++++|. .+|..+ ++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~--~ip-~ls~l~~Le~L~L~~c~~L~-~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l 703 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLK--EIP-DLSMATNLETLKLSDCSSLV-ELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NL 703 (1153)
T ss_pred cccCCCCCEEECCCCCCcC--cCC-ccccCCcccEEEecCCCCcc-ccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CC
Confidence 4567777777777764443 233 24566777777777776443 4444554 67777777777765 333332 56
Q ss_pred CCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCC
Q 003270 284 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAA 363 (835)
Q Consensus 284 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~ 363 (835)
++|++|++++|..+.. .+. ...+|++|+++++.+ ..+|..+ .+++
T Consensus 704 ~sL~~L~Lsgc~~L~~-~p~---~~~nL~~L~L~~n~i-~~lP~~~------------------------------~l~~ 748 (1153)
T PLN03210 704 KSLYRLNLSGCSRLKS-FPD---ISTNISWLDLDETAI-EEFPSNL------------------------------RLEN 748 (1153)
T ss_pred CCCCEEeCCCCCCccc-ccc---ccCCcCeeecCCCcc-ccccccc------------------------------cccc
Confidence 6666666666633221 111 124566666666553 2333221 1223
Q ss_pred cceeeeccCccccchhhcchhhHH-HHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCC
Q 003270 364 LHRINITSNSLQKLSLQKQENLTS-LALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCST 442 (835)
Q Consensus 364 L~~L~l~~n~l~~~~~~~~~~l~~-l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~ 442 (835)
|++|.+..+...... .....+.. ....+++|+.|++++|+.+. ..|..+ +.+++|+.|++++|..++.+|..
T Consensus 749 L~~L~l~~~~~~~l~-~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~-~lP~si---~~L~~L~~L~Ls~C~~L~~LP~~-- 821 (1153)
T PLN03210 749 LDELILCEMKSEKLW-ERVQPLTPLMTMLSPSLTRLFLSDIPSLV-ELPSSI---QNLHKLEHLEIENCINLETLPTG-- 821 (1153)
T ss_pred cccccccccchhhcc-ccccccchhhhhccccchheeCCCCCCcc-ccChhh---hCCCCCCEEECCCCCCcCeeCCC--
Confidence 333333221110000 00000000 01134789999999964443 345555 78889999999998766654421
Q ss_pred cceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCccccccc
Q 003270 443 SLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY 522 (835)
Q Consensus 443 ~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~ 522 (835)
..+++|+.+++++|..+...+.. .++|+.|++++|.+ ..+|..+
T Consensus 822 -----------------~~L~sL~~L~Ls~c~~L~~~p~~-----------~~nL~~L~Ls~n~i--------~~iP~si 865 (1153)
T PLN03210 822 -----------------INLESLESLDLSGCSRLRTFPDI-----------STNISDLNLSRTGI--------EEVPWWI 865 (1153)
T ss_pred -----------------CCccccCEEECCCCCcccccccc-----------ccccCEeECCCCCC--------ccChHHH
Confidence 13667888888888876643222 24677778888877 6678888
Q ss_pred ccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcC
Q 003270 523 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIG 566 (835)
Q Consensus 523 ~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~ 566 (835)
..+++|+.|++++|+++.. ++.....+++|+.+++++|..+.
T Consensus 866 ~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 866 EKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred hcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 8999999999999987764 66667788899999999987654
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.3e-18 Score=205.40 Aligned_cols=341 Identities=21% Similarity=0.215 Sum_probs=189.7
Q ss_pred HHhcCCCCCEEeCCCCCC-----CChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHH
Q 003270 232 AATSCPQLESLDMSNCSC-----VSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAA 304 (835)
Q Consensus 232 ~~~~~~~L~~L~L~~~~~-----l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 304 (835)
.+.++++|+.|.+..+.. .....+..+..-..+|+.|++.++. .+|..+ ...+|++|++.++ .+.. .+..
T Consensus 553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s-~l~~-L~~~ 629 (1153)
T PLN03210 553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGS-KLEK-LWDG 629 (1153)
T ss_pred HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCc-cccc-cccc
Confidence 456666677666654320 1111222222112356677766654 455444 4566777777664 3332 2334
Q ss_pred hhhccCccEEEccCCCccccccc--cCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcc
Q 003270 305 ISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQ 382 (835)
Q Consensus 305 l~~~~~L~~L~l~~~~~~~~~~~--~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~ 382 (835)
+..+++|+.|+++++...+.+|. .+++|+.|.+.+|..+..+.- .+.++
T Consensus 630 ~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~~lp~--------si~~L--------------------- 680 (1153)
T PLN03210 630 VHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLVELPS--------SIQYL--------------------- 680 (1153)
T ss_pred cccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCccccch--------hhhcc---------------------
Confidence 45566677777766655554442 123344444433333222110 12333
Q ss_pred hhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccc--
Q 003270 383 ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-- 460 (835)
Q Consensus 383 ~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~-- 460 (835)
++|+.|++++|+.++... . ...+++|+.|++++|..+..++....+++.+.+.+.. ++.++.
T Consensus 681 ----------~~L~~L~L~~c~~L~~Lp-~----~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~n~-i~~lP~~~ 744 (1153)
T PLN03210 681 ----------NKLEDLDMSRCENLEILP-T----GINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDETA-IEEFPSNL 744 (1153)
T ss_pred ----------CCCCEEeCCCCCCcCccC-C----cCCCCCCCEEeCCCCCCccccccccCCcCeeecCCCc-cccccccc
Confidence 344444444444333211 1 0134444444444444444333333334444443321 222221
Q ss_pred cCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCc
Q 003270 461 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLK 540 (835)
Q Consensus 461 ~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~ 540 (835)
.+++|+.|.+.++....-+... ..+..+....+++|+.|++++|... ..+|..+.++++|+.|++++|..+.
T Consensus 745 ~l~~L~~L~l~~~~~~~l~~~~-~~l~~~~~~~~~sL~~L~Ls~n~~l-------~~lP~si~~L~~L~~L~Ls~C~~L~ 816 (1153)
T PLN03210 745 RLENLDELILCEMKSEKLWERV-QPLTPLMTMLSPSLTRLFLSDIPSL-------VELPSSIQNLHKLEHLEIENCINLE 816 (1153)
T ss_pred cccccccccccccchhhccccc-cccchhhhhccccchheeCCCCCCc-------cccChhhhCCCCCCEEECCCCCCcC
Confidence 3455565655554321111000 0011111234566777777766542 6788889999999999999997665
Q ss_pred cchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHH
Q 003270 541 DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLES 620 (835)
Q Consensus 541 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 620 (835)
. +|..+ .+++|+.|++++|...... +. ..++|++|++++|.+..+|..+..+++|+.|++++|++++.....
T Consensus 817 ~--LP~~~-~L~sL~~L~Ls~c~~L~~~-p~---~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~- 888 (1153)
T PLN03210 817 T--LPTGI-NLESLESLDLSGCSRLRTF-PD---ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLN- 888 (1153)
T ss_pred e--eCCCC-CccccCEEECCCCCccccc-cc---cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcc-
Confidence 3 55544 6889999999999876542 11 246899999999999999999999999999999999888875432
Q ss_pred HHhcCCCCCccEEeCCCcc
Q 003270 621 LYKKGSLPALQELDLSYGT 639 (835)
Q Consensus 621 l~~~~~~~~L~~L~l~~n~ 639 (835)
+..+++|+.+++++|.
T Consensus 889 ---~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 889 ---ISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---cccccCCCeeecCCCc
Confidence 2567888888888884
|
syringae 6; Provisional |
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=172.50 Aligned_cols=72 Identities=35% Similarity=0.719 Sum_probs=58.9
Q ss_pred HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCC
Q 003270 205 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 276 (835)
Q Consensus 205 ~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 276 (835)
....+||++++|.+.+|..+++.........|++|++|++..|..+++..+..++..|++|++|++++|..+
T Consensus 158 t~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi 229 (483)
T KOG4341|consen 158 TFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQI 229 (483)
T ss_pred HHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchh
Confidence 455678888888888888888888877888889999999999888888888888888888888888887533
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.2e-17 Score=153.30 Aligned_cols=236 Identities=19% Similarity=0.291 Sum_probs=170.5
Q ss_pred HHHHHHhhhccccchhhhHHHHHHHHhhcCCCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhh-HHHHHHh
Q 003270 42 MVLQKQKIWKSGWILQMTYCIWQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHL-LVMKAVS 120 (835)
Q Consensus 42 ~~l~~~~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~-~~~~~l~ 120 (835)
..++.|.-++......++.||++|++.+.+...|..++....++++..+.++.++ .+..+.+.. ....+ .+++.+.
T Consensus 105 ill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~r--gV~v~Rlar-~~~~~prlae~~~ 181 (419)
T KOG2120|consen 105 ILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSR--GVIVFRLAR-SFMDQPRLAEHFS 181 (419)
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhC--CeEEEEcch-hhhcCchhhhhhh
Confidence 3445555555555666789999999999999999999999999999888887754 455666554 12222 2344333
Q ss_pred h-CCcCcEEEcCCcccChh-hHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEe
Q 003270 121 L-LRNLEALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 198 (835)
Q Consensus 121 ~-~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l 198 (835)
- -+.|++||++...|+.. .-..++.|++|+.|.+.++.+++.
T Consensus 182 ~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~------------------------------------ 225 (419)
T KOG2120|consen 182 PFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDP------------------------------------ 225 (419)
T ss_pred hhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcH------------------------------------
Confidence 3 34689999998888855 334556788888888888877653
Q ss_pred cccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCC---
Q 003270 199 KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN--- 275 (835)
Q Consensus 199 ~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~--- 275 (835)
|...++...+|+.|+++.|.+++..++...+.+|+.|++|++++|...++..-..+.+--++|..|+++++..
T Consensus 226 ----I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~ 301 (419)
T KOG2120|consen 226 ----IVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQ 301 (419)
T ss_pred ----HHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhh
Confidence 3345667778888888888888877777788888888888888888444443334444456788888888761
Q ss_pred ---CCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCC
Q 003270 276 ---ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 320 (835)
Q Consensus 276 ---l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 320 (835)
+..-..++|+|.+|++++|..+++.....+.++..|++|.++.|.
T Consensus 302 ~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY 349 (419)
T KOG2120|consen 302 KSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCY 349 (419)
T ss_pred hhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhc
Confidence 122234688888888888877888778888888889999888886
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.6e-17 Score=162.94 Aligned_cols=275 Identities=23% Similarity=0.359 Sum_probs=147.9
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHh-hhhccccceeeecCcccc---CchHHHhcc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYS-LRSLQNLTMLDLSYTFLT---NLEPVFESC 599 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~~~l~~L~~L~Ls~~~~~---~l~~~~~~~ 599 (835)
+|++++.|++.+|.++++.........|+.|+++++..|..+++..... ...+++|++|.+++|.-- ++...++++
T Consensus 162 ~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~ 241 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGC 241 (483)
T ss_pred hCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccc
Confidence 3444444444444444444444444444444444444444444332221 224444444444444321 233344455
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCc-ccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG-TLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQP 678 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 678 (835)
..++.+..++|..++........ ..+.-+-++++.+| .++++.+...-..+..|+.+..++|..+.+......+..
T Consensus 242 ~~l~~~~~kGC~e~~le~l~~~~--~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~- 318 (483)
T KOG4341|consen 242 KELEKLSLKGCLELELEALLKAA--AYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQH- 318 (483)
T ss_pred hhhhhhhhcccccccHHHHHHHh--ccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcC-
Confidence 55555555555444433333321 23334444444443 344443333344455555555555554433221111111
Q ss_pred CCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcc-cccCccceEeccCCCCcccc-----cccccc
Q 003270 679 FESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQ-ARCFHLSSLNLSLSANLKEV-----DVACFN 752 (835)
Q Consensus 679 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~-~~~~~L~~L~l~~~~~l~~~-----~~~~~~ 752 (835)
..+|+.+.+.+|.++++.-+..+ .++++|+.+++.+|..+.+. ..+|+.
T Consensus 319 -------------------------~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~ 373 (483)
T KOG4341|consen 319 -------------------------CHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPR 373 (483)
T ss_pred -------------------------CCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCch
Confidence 22355555555555554433333 34566666666655444432 335677
Q ss_pred ccEEecccccchhhhh--------hcCCccceeecccCc-CChhHHHHHHhcCCCcceeecccccCCCchHHHHHHHhCC
Q 003270 753 LCFLNLSNCCSLETLK--------LDCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACP 823 (835)
Q Consensus 753 L~~L~l~~c~~l~~l~--------~~~~~L~~L~l~~~~-i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~p 823 (835)
|+++.+++|..++... .....|+.+.+++|+ ++|..++ .+..|++||.+++.+|..+...++..+++.+|
T Consensus 374 lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 374 LRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 7777777776554431 235789999999999 6655444 48899999999999999999999999999999
Q ss_pred cchh
Q 003270 824 SLKR 827 (835)
Q Consensus 824 ~l~~ 827 (835)
+++.
T Consensus 453 ~i~v 456 (483)
T KOG4341|consen 453 NIKV 456 (483)
T ss_pred ccee
Confidence 9874
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.5e-15 Score=155.78 Aligned_cols=177 Identities=18% Similarity=0.260 Sum_probs=94.8
Q ss_pred CCCCCHHHHHHHHhcCCCeeEEEccCCcchhh----HHHHHHhhCCcCcEEEcCCcccC------hhhHHhhcCCCCCCE
Q 003270 82 NRKISVEQFEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQLG------DAFFHALADCSMLKS 151 (835)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~------~~~~~~l~~~~~L~~ 151 (835)
....+.......++..++++.++++++ .+.+ .+++.+...+++++++++++.+. ..++..+..+++|+.
T Consensus 7 ~~~l~~~~~~~~~~~l~~L~~l~l~~~-~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~ 85 (319)
T cd00116 7 GELLKTERATELLPKLLCLQVLRLEGN-TLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQE 85 (319)
T ss_pred cCcccccchHHHHHHHhhccEEeecCC-CCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeE
Confidence 333333444555556666777777774 3322 24445566677777777777665 234556666777777
Q ss_pred EEecCCCCCcccccccccCCc---ccEEeccCccccccccCCCCCcEEEecccchHHHhhcC-CCCcEEeecCCCCCCHH
Q 003270 152 LNVNDATLGNGVQEIPINHDQ---LRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNC-PLLHLLDIASCHKLSDA 227 (835)
Q Consensus 152 L~l~~~~~~~~~~~~~~~l~~---L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~-~~L~~L~l~~~~~l~~~ 227 (835)
|++++|.+.+..+..+..+.. |++|++++|.+.... ...+...+..+ ++|++|++++| .++..
T Consensus 86 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~------------~~~l~~~l~~~~~~L~~L~L~~n-~l~~~ 152 (319)
T cd00116 86 LDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRG------------LRLLAKGLKDLPPALEKLVLGRN-RLEGA 152 (319)
T ss_pred EEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHH------------HHHHHHHHHhCCCCceEEEcCCC-cCCch
Confidence 777777765444333333322 444444444332100 00011334455 67777777776 34422
Q ss_pred ---HHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHH---hCCCCcEEecCCC
Q 003270 228 ---AIRLAATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYC 273 (835)
Q Consensus 228 ---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~ 273 (835)
.+...+..+++|++|++++|. +++.....+.. .+++|+.|++++|
T Consensus 153 ~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~l~~~l~~~~~L~~L~L~~n 203 (319)
T cd00116 153 SCEALAKALRANRDLKELNLANNG-IGDAGIRALAEGLKANCNLEVLDLNNN 203 (319)
T ss_pred HHHHHHHHHHhCCCcCEEECcCCC-CchHHHHHHHHHHHhCCCCCEEeccCC
Confidence 233445556677777777776 66544433322 2335666666655
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-16 Score=151.81 Aligned_cols=206 Identities=20% Similarity=0.177 Sum_probs=123.6
Q ss_pred hHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH
Q 003270 570 LYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 648 (835)
Q Consensus 570 ~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~ 648 (835)
..+|..+++|++|++++|.++.+.+ +|.+...+++|.+..|+ +.......+ .++.+|+.|++++|+|+. ..|..
T Consensus 267 ~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~-l~~v~~~~f---~~ls~L~tL~L~~N~it~-~~~~a 341 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNK-LEFVSSGMF---QGLSGLKTLSLYDNQITT-VAPGA 341 (498)
T ss_pred HHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcch-HHHHHHHhh---hccccceeeeecCCeeEE-Eeccc
Confidence 3568899999999999999998765 88889999999999988 776655554 788899999999999987 67888
Q ss_pred HhhCCCccEEEccCCCCCcc--ccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcc
Q 003270 649 LAYCTHLTHVSLNGCGNMHD--LNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQ 726 (835)
Q Consensus 649 l~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~ 726 (835)
|..+.+|.+|++-.||...+ +.|-..|..-.. ..+...-+....++.+.+++. .++.+
T Consensus 342 F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~--------------~~~~~~Cq~p~~~~~~~~~dv------~~~~~ 401 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKS--------------VVGNPRCQSPGFVRQIPISDV------AFGDF 401 (498)
T ss_pred ccccceeeeeehccCcccCccchHHHHHHHhhCC--------------CCCCCCCCCCchhccccchhc------ccccc
Confidence 99999999999988875432 223222221111 000001111112222222221 11110
Q ss_pred cccCccceEeccCCCCccccccccccccEEecccccchhhhhhcCC-ccceeecccCcCChhHHHHHHhcCCCcceeecc
Q 003270 727 ARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCP-KLTSLFLQSCNIDEEGVESAITQCGMLETLDVR 805 (835)
Q Consensus 727 ~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~-~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~ 805 (835)
.|..=++.. |..-......++-+.++.=.....++.+|.+.| .-.++++.+|.++ .+|.. .+.+| .+|++
T Consensus 402 -~c~~~ee~~---~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~--~vp~~--~~~~l-~~dls 472 (498)
T KOG4237|consen 402 -RCGGPEELG---CLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT--SVPDE--LLRSL-LLDLS 472 (498)
T ss_pred -ccCCccccC---CCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc--ccCHH--HHhhh-hcccc
Confidence 000000100 111111112334444433334456777777766 5778888888874 55554 55577 88888
Q ss_pred cccC
Q 003270 806 FCPK 809 (835)
Q Consensus 806 ~c~~ 809 (835)
+|+.
T Consensus 473 ~n~i 476 (498)
T KOG4237|consen 473 NNRI 476 (498)
T ss_pred cCce
Confidence 8774
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.4e-13 Score=143.82 Aligned_cols=222 Identities=18% Similarity=0.193 Sum_probs=140.4
Q ss_pred ceeeccCCCCCCHH---HHHHHHhcCCCeeEEEccCCcchh------hHHHHHHhhCCcCcEEEcCCcccChhhHHhhcC
Q 003270 75 WRCLNFENRKISVE---QFEDVCQRYPNATEVNIYGAPAIH------LLVMKAVSLLRNLEALTLGRGQLGDAFFHALAD 145 (835)
Q Consensus 75 ~~~l~~~~~~~~~~---~~~~~~~~~~~l~~L~l~~~~~~~------~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~ 145 (835)
.+.+.+....++.. .+...+...+++++++++++ .+. ..++.++..+++|+.|++++|.+.+..+..+..
T Consensus 25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHH
Confidence 45666666666443 45556678888999999884 333 335567888999999999999998766666655
Q ss_pred CCC---CCEEEecCCCCCc----ccccccccC-CcccEEeccCccccc-----c---ccCCCCCcEEEecccchH-----
Q 003270 146 CSM---LKSLNVNDATLGN----GVQEIPINH-DQLRRLEITKCRVMR-----V---SIRCPQLEHLSLKRSNMA----- 204 (835)
Q Consensus 146 ~~~---L~~L~l~~~~~~~----~~~~~~~~l-~~L~~L~l~~~~~~~-----~---~~~l~~L~~L~l~~~~i~----- 204 (835)
+.. |++|++++|++++ .+...+..+ ++|+.|++++|.+.. + ...+++|++|++++|.+.
T Consensus 104 l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 183 (319)
T cd00116 104 LLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIR 183 (319)
T ss_pred HhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHH
Confidence 555 9999999998873 233344555 788888888887762 1 124556777777777654
Q ss_pred ---HHhhcCCCCcEEeecCCCCCCHHH---HHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhC----CCCcEEecCCCC
Q 003270 205 ---QAVLNCPLLHLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCSCVSDESLREIALSC----ANLRILNSSYCP 274 (835)
Q Consensus 205 ---~~~~~~~~L~~L~l~~~~~l~~~~---l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~----~~L~~L~l~~~~ 274 (835)
..+..+++|++|++++| .+++.+ +...+..+++|++|++++|. +++..+..+...+ +.|++|++++|.
T Consensus 184 ~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~ 261 (319)
T cd00116 184 ALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND 261 (319)
T ss_pred HHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC
Confidence 22344557777777776 354333 23345566677777777776 6665555555333 566666666663
Q ss_pred CC-------CccccCCCCCcEEecCCCCCCChh
Q 003270 275 NI-------SLESVRLPMLTVLQLHSCEGITSA 300 (835)
Q Consensus 275 ~l-------~~~~~~~~~L~~L~l~~~~~~~~~ 300 (835)
-. ......+++|+++++++| .+.+.
T Consensus 262 i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 262 ITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred CCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 11 122233455555555554 44444
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1e-13 Score=155.98 Aligned_cols=33 Identities=18% Similarity=0.116 Sum_probs=17.7
Q ss_pred cccEEecccccchhhhhh---cCCccceeecccCcCC
Q 003270 752 NLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNID 785 (835)
Q Consensus 752 ~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~ 785 (835)
+|+.|+++++. ++.+|. .+++|+.|++++|+++
T Consensus 423 ~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~Ls 458 (788)
T PRK15387 423 GLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNPLS 458 (788)
T ss_pred hhhhhhhccCc-ccccChHHhhccCCCeEECCCCCCC
Confidence 44445555443 444542 3556666666666665
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.48 E-value=9.1e-16 Score=150.75 Aligned_cols=126 Identities=17% Similarity=0.160 Sum_probs=106.5
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecC-CCCCcccccccccCCcccEE
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L 176 (835)
+...+|+++. |.+....+++|..+++||.|+|++|.|+.+.|++|.++++|.+|-+.+ |+++..-...++++..|+.|
T Consensus 67 ~~tveirLdq-N~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrL 145 (498)
T KOG4237|consen 67 PETVEIRLDQ-NQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRL 145 (498)
T ss_pred CcceEEEecc-CCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHH
Confidence 4689999999 789998889999999999999999999999999999999998888777 88877666789999999999
Q ss_pred eccCcccccc----ccCCCCCcEEEecccchH----HHhhcCCCCcEEeecCCCCC
Q 003270 177 EITKCRVMRV----SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKL 224 (835)
Q Consensus 177 ~l~~~~~~~~----~~~l~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l 224 (835)
.+.-|++.-+ ...+++|..|.+.+|.+. ..+..+..++.+.+..|+.+
T Consensus 146 llNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~i 201 (498)
T KOG4237|consen 146 LLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFI 201 (498)
T ss_pred hcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccc
Confidence 9998887543 447888888888888776 35667788888888877633
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=4.5e-13 Score=150.83 Aligned_cols=256 Identities=21% Similarity=0.141 Sum_probs=135.1
Q ss_pred cCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHH
Q 003270 309 YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSL 388 (835)
Q Consensus 309 ~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l 388 (835)
..-..|+++++.+. .+|..++. +++.+.+..|.++.+. ...++|++|++++|+++... .
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~~----------~L~~L~L~~N~Lt~LP-~lp~~Lk~LdLs~N~LtsLP-~-------- 259 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLPA----------HITTLVIPDNNLTSLP-ALPPELRTLEVSGNQLTSLP-V-------- 259 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchhc----------CCCEEEccCCcCCCCC-CCCCCCcEEEecCCccCccc-C--------
Confidence 45678999988754 56655431 2333344445444431 12467777777777776542 1
Q ss_pred HhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEE
Q 003270 389 ALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKV 468 (835)
Q Consensus 389 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l 468 (835)
..++|+.|++++ +.++.. |. .+++|+.|++++|. ++.++. ..++|+.|
T Consensus 260 --lp~sL~~L~Ls~-N~L~~L-p~------lp~~L~~L~Ls~N~-Lt~LP~---------------------~p~~L~~L 307 (788)
T PRK15387 260 --LPPGLLELSIFS-NPLTHL-PA------LPSGLCKLWIFGNQ-LTSLPV---------------------LPPGLQEL 307 (788)
T ss_pred --cccccceeeccC-Cchhhh-hh------chhhcCEEECcCCc-cccccc---------------------ccccccee
Confidence 125677777777 356532 11 12456677776664 444432 23456666
Q ss_pred ecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhh
Q 003270 469 CLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATT 548 (835)
Q Consensus 469 ~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~ 548 (835)
+++++ ++..++..|. .|+.|++++|.+ ..+|.. ..+|++|++++| +++. +|..
T Consensus 308 dLS~N-~L~~Lp~lp~-----------~L~~L~Ls~N~L--------~~LP~l---p~~Lq~LdLS~N-~Ls~--LP~l- 360 (788)
T PRK15387 308 SVSDN-QLASLPALPS-----------ELCKLWAYNNQL--------TSLPTL---PSGLQELSVSDN-QLAS--LPTL- 360 (788)
T ss_pred ECCCC-ccccCCCCcc-----------cccccccccCcc--------cccccc---ccccceEecCCC-ccCC--CCCC-
Confidence 66654 3333322222 244445555555 223321 135666666665 3432 3321
Q ss_pred hcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCC
Q 003270 549 TSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 628 (835)
Q Consensus 549 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 628 (835)
.++|+.|++++|..... +. ..++|+.|++++|.++++|.. .++|+.|++++|+ ++... . ...
T Consensus 361 --p~~L~~L~Ls~N~L~~L--P~---l~~~L~~LdLs~N~Lt~LP~l---~s~L~~LdLS~N~-LssIP-~------l~~ 422 (788)
T PRK15387 361 --PSELYKLWAYNNRLTSL--PA---LPSGLKELIVSGNRLTSLPVL---PSELKELMVSGNR-LTSLP-M------LPS 422 (788)
T ss_pred --CcccceehhhccccccC--cc---cccccceEEecCCcccCCCCc---ccCCCEEEccCCc-CCCCC-c------chh
Confidence 24566666666653321 11 124566666666666665542 2456666666666 55321 1 123
Q ss_pred CccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 629 ALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 629 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+|+.|++++|+++. +|..+..+++|+.|++++|+
T Consensus 423 ~L~~L~Ls~NqLt~--LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 423 GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred hhhhhhhccCcccc--cChHHhhccCCCeEECCCCC
Confidence 56666666666653 55556666666666666665
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.8e-12 Score=144.53 Aligned_cols=225 Identities=18% Similarity=0.157 Sum_probs=121.1
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEE
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 605 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L 605 (835)
++|+.|++++| +++. +|..+ .++|+.|++++|..... +..+ .++|+.|++++|.+..+|..+. .+|+.|
T Consensus 199 ~~L~~L~Ls~N-~Lts--LP~~l--~~nL~~L~Ls~N~LtsL--P~~l--~~~L~~L~Ls~N~L~~LP~~l~--s~L~~L 267 (754)
T PRK15370 199 EQITTLILDNN-ELKS--LPENL--QGNIKTLYANSNQLTSI--PATL--PDTIQEMELSINRITELPERLP--SALQSL 267 (754)
T ss_pred cCCcEEEecCC-CCCc--CChhh--ccCCCEEECCCCccccC--Chhh--hccccEEECcCCccCcCChhHh--CCCCEE
Confidence 35666666665 3432 33322 24566666666654321 2222 2356666666666666665443 356666
Q ss_pred ecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCCCCCCccc
Q 003270 606 KLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVY 685 (835)
Q Consensus 606 ~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~ 685 (835)
++++|+ ++.. +..+ .++|+.|++++|+++. +|..+ .++|+.|++++|. +..++
T Consensus 268 ~Ls~N~-L~~L-P~~l-----~~sL~~L~Ls~N~Lt~--LP~~l--p~sL~~L~Ls~N~-Lt~LP--------------- 320 (754)
T PRK15370 268 DLFHNK-ISCL-PENL-----PEELRYLSVYDNSIRT--LPAHL--PSGITHLNVQSNS-LTALP--------------- 320 (754)
T ss_pred ECcCCc-cCcc-cccc-----CCCCcEEECCCCcccc--Ccccc--hhhHHHHHhcCCc-cccCC---------------
Confidence 666665 5532 2221 2466666666666653 33222 1356666666653 11111
Q ss_pred cccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCCcccccc-ccccccEEecccccch
Q 003270 686 NSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDV-ACFNLCFLNLSNCCSL 764 (835)
Q Consensus 686 ~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~-~~~~L~~L~l~~c~~l 764 (835)
.....+|+.|++.+|. ++. +|. .-+++|+.|+++++ .+..+.. ..++|++|++++|. +
T Consensus 321 ---------------~~l~~sL~~L~Ls~N~-Lt~--LP~-~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~N~-L 379 (754)
T PRK15370 321 ---------------ETLPPGLKTLEAGENA-LTS--LPA-SLPPELQVLDVSKN-QITVLPETLPPTITTLDVSRNA-L 379 (754)
T ss_pred ---------------ccccccceeccccCCc-ccc--CCh-hhcCcccEEECCCC-CCCcCChhhcCCcCEEECCCCc-C
Confidence 0011245566655552 333 222 11256777777764 2333322 23678888888874 5
Q ss_pred hhhhhcC-CccceeecccCcCCh--hHHHHHHhcCCCcceeecccccC
Q 003270 765 ETLKLDC-PKLTSLFLQSCNIDE--EGVESAITQCGMLETLDVRFCPK 809 (835)
Q Consensus 765 ~~l~~~~-~~L~~L~l~~~~i~~--~~l~~~~~~~~~L~~l~l~~c~~ 809 (835)
+.+|..+ ++|+.|++++|+++. ..+|.....++++..|++.+||.
T Consensus 380 t~LP~~l~~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 380 TNLPENLPAALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred CCCCHhHHHHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 6666544 368888888888641 23455555667888888888773
|
|
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.6e-11 Score=134.53 Aligned_cols=124 Identities=23% Similarity=0.286 Sum_probs=71.2
Q ss_pred CCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS 575 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 575 (835)
+|+.|++++|.++ .+|..+ .++|+.|++++| .++. ++..+ .++|+.|++++|+.... +..+
T Consensus 305 sL~~L~Ls~N~Lt--------~LP~~l--~~sL~~L~Ls~N-~Lt~--LP~~l--~~sL~~L~Ls~N~L~~L--P~~l-- 365 (754)
T PRK15370 305 GITHLNVQSNSLT--------ALPETL--PPGLKTLEAGEN-ALTS--LPASL--PPELQVLDVSKNQITVL--PETL-- 365 (754)
T ss_pred hHHHHHhcCCccc--------cCCccc--cccceeccccCC-cccc--CChhh--cCcccEEECCCCCCCcC--Chhh--
Confidence 4555666666652 233322 256777777776 3432 44332 25677777777764421 2223
Q ss_pred ccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHh-cCCCCCccEEeCCCcccch
Q 003270 576 LQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYK-KGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~~~L~~L~l~~n~~~~ 642 (835)
.++|+.|++++|.++.+|..+. ..|+.|++++|+ ++.. +..+.. ...++.+..|++.+|.++.
T Consensus 366 p~~L~~LdLs~N~Lt~LP~~l~--~sL~~LdLs~N~-L~~L-P~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 366 PPTITTLDVSRNALTNLPENLP--AALQIMQASRNN-LVRL-PESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred cCCcCEEECCCCcCCCCCHhHH--HHHHHHhhccCC-cccC-chhHHHHhhcCCCccEEEeeCCCccH
Confidence 2567777777777777766544 357777777776 5533 222211 2345677777777777765
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.6e-11 Score=114.76 Aligned_cols=228 Identities=23% Similarity=0.327 Sum_probs=133.1
Q ss_pred HHHHHhcCCCeeEEEccCCcchhh----HHHHHHhhCCcCcEEEcCCcc---cChhhH-------HhhcCCCCCCEEEec
Q 003270 90 FEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQ---LGDAFF-------HALADCSMLKSLNVN 155 (835)
Q Consensus 90 ~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~---i~~~~~-------~~l~~~~~L~~L~l~ 155 (835)
+.........++.|+++| +.+.. ++.+.+.+-++|+..++++=. ..+.+| +++..+++|++++|+
T Consensus 22 v~~~~~~~~s~~~l~lsg-nt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLS 100 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSG-NTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLS 100 (382)
T ss_pred HHHHhcccCceEEEeccC-CchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecc
Confidence 344444555566666666 33332 344445555566666655321 112222 233356666666666
Q ss_pred CCCCCcc----cccccccCCcccEEeccCcccccc-----------------ccCCCCCcEEEecccchH--------HH
Q 003270 156 DATLGNG----VQEIPINHDQLRRLEITKCRVMRV-----------------SIRCPQLEHLSLKRSNMA--------QA 206 (835)
Q Consensus 156 ~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~l~~L~~L~l~~~~i~--------~~ 206 (835)
+|.+... +.+.+..+..|++|.+.+|.+... ...-++|+++...+|.+. ..
T Consensus 101 DNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~ 180 (382)
T KOG1909|consen 101 DNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEA 180 (382)
T ss_pred ccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHH
Confidence 6665432 223444556666666666665432 124677888888777443 56
Q ss_pred hhcCCCCcEEeecCCCCCCHHH---HHHHHhcCCCCCEEeCCCCCCCChHHHHHHH---HhCCCCcEEecCCCCC-----
Q 003270 207 VLNCPLLHLLDIASCHKLSDAA---IRLAATSCPQLESLDMSNCSCVSDESLREIA---LSCANLRILNSSYCPN----- 275 (835)
Q Consensus 207 ~~~~~~L~~L~l~~~~~l~~~~---l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~~----- 275 (835)
+...+.|+++.+..|. +...+ +...+..|++|+.|||.+|. ++..+-..++ ..+++|++|++++|.-
T Consensus 181 ~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga 258 (382)
T KOG1909|consen 181 FQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCLLENEGA 258 (382)
T ss_pred HHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccccccccH
Confidence 6777888888888874 44333 34566788888888888887 6655444443 3566788888888751
Q ss_pred --CCccc-cCCCCCcEEecCCCCCCChhhHHH----hhhccCccEEEccCCCc
Q 003270 276 --ISLES-VRLPMLTVLQLHSCEGITSASMAA----ISHSYMLEVLELDNCNL 321 (835)
Q Consensus 276 --l~~~~-~~~~~L~~L~l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~ 321 (835)
+...+ ...|+|+.+.+.+| .++...... ++..+.|+.|++++|.+
T Consensus 259 ~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 259 IAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 11111 24678888888876 555443333 33457788888888865
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=8e-13 Score=114.86 Aligned_cols=154 Identities=21% Similarity=0.209 Sum_probs=97.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+-++..++.+.+++|++ ..+|..+..+.+|+.|++++| ++.+ +|..++.++.|+.|++.-|+.... +
T Consensus 29 Lf~~s~ITrLtLSHNKl--------~~vppnia~l~nlevln~~nn-qie~--lp~~issl~klr~lnvgmnrl~~l--p 95 (264)
T KOG0617|consen 29 LFNMSNITRLTLSHNKL--------TVVPPNIAELKNLEVLNLSNN-QIEE--LPTSISSLPKLRILNVGMNRLNIL--P 95 (264)
T ss_pred ccchhhhhhhhcccCce--------eecCCcHHHhhhhhhhhcccc-hhhh--cChhhhhchhhhheecchhhhhcC--c
Confidence 34445556666666666 455556666677777777766 4543 666666777777777766654333 5
Q ss_pred HhhhhccccceeeecCccccC--chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 648 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~ 648 (835)
..|+.++.|+.||+++|+++. +|..|..+..|+.|.+++|. ++-. +..+ +++++|+.|.+.+|.+.. +|..
T Consensus 96 rgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dnd-fe~l-p~dv---g~lt~lqil~lrdndll~--lpke 168 (264)
T KOG0617|consen 96 RGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDND-FEIL-PPDV---GKLTNLQILSLRDNDLLS--LPKE 168 (264)
T ss_pred cccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCC-cccC-Chhh---hhhcceeEEeeccCchhh--CcHH
Confidence 667777777777777776663 66666666677777777666 4322 3322 566677777777766643 5666
Q ss_pred HhhCCCccEEEccCCC
Q 003270 649 LAYCTHLTHVSLNGCG 664 (835)
Q Consensus 649 l~~~~~L~~L~l~~~~ 664 (835)
++.++.|++|.+.+|.
T Consensus 169 ig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 169 IGDLTRLRELHIQGNR 184 (264)
T ss_pred HHHHHHHHHHhcccce
Confidence 6667777777776664
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.3e-13 Score=115.09 Aligned_cols=114 Identities=22% Similarity=0.261 Sum_probs=94.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
++.+++|+.+++..|.+ ..+|..|+.++.|+.||+.+| ++.+..+|..|..+..|+.|++++|.+--. +
T Consensus 75 issl~klr~lnvgmnrl--------~~lprgfgs~p~levldltyn-nl~e~~lpgnff~m~tlralyl~dndfe~l--p 143 (264)
T KOG0617|consen 75 ISSLPKLRILNVGMNRL--------NILPRGFGSFPALEVLDLTYN-NLNENSLPGNFFYMTTLRALYLGDNDFEIL--P 143 (264)
T ss_pred hhhchhhhheecchhhh--------hcCccccCCCchhhhhhcccc-ccccccCCcchhHHHHHHHHHhcCCCcccC--C
Confidence 67778888888888887 778888999999999999998 688888888888888888888888875432 6
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNT 616 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 616 (835)
..++++++|+.|.+..|++-.+|..++.+..|++|.+.+|. ++-.
T Consensus 144 ~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnr-l~vl 188 (264)
T KOG0617|consen 144 PDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNR-LTVL 188 (264)
T ss_pred hhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccce-eeec
Confidence 78888888888888888888888888888888888888887 6544
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.2e-10 Score=108.04 Aligned_cols=230 Identities=21% Similarity=0.289 Sum_probs=170.1
Q ss_pred HHHhhcCCCCceeeccCCCCCCHHHHH---HHHhcCCCeeEEEccCC--cchhhHHH-------HHHhhCCcCcEEEcCC
Q 003270 65 WRAASAHEDFWRCLNFENRKISVEQFE---DVCQRYPNATEVNIYGA--PAIHLLVM-------KAVSLLRNLEALTLGR 132 (835)
Q Consensus 65 W~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~~L~l~~~--~~~~~~~~-------~~l~~~~~L~~L~l~~ 132 (835)
...........+.+++++.++..+... ..++..+.++..+++.. .....-+| +++..+++|++|+||+
T Consensus 22 v~~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSD 101 (382)
T KOG1909|consen 22 VEEELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSD 101 (382)
T ss_pred HHHHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccc
Confidence 334444566778999999888765544 44677788898888872 11222233 3566788999999999
Q ss_pred cccChhhHHhh----cCCCCCCEEEecCCCCCcc-------------cccccccCCcccEEeccCcccccc--------c
Q 003270 133 GQLGDAFFHAL----ADCSMLKSLNVNDATLGNG-------------VQEIPINHDQLRRLEITKCRVMRV--------S 187 (835)
Q Consensus 133 ~~i~~~~~~~l----~~~~~L~~L~l~~~~~~~~-------------~~~~~~~l~~L~~L~l~~~~~~~~--------~ 187 (835)
|.+....++.| ..++.|++|.+.+|.+... .......-++||++....|++.+. .
T Consensus 102 NA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~ 181 (382)
T KOG1909|consen 102 NAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAF 181 (382)
T ss_pred cccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHH
Confidence 99986655544 5799999999999987522 122344568999999999987543 3
Q ss_pred cCCCCCcEEEecccchH--------HHhhcCCCCcEEeecCCCCCCHH---HHHHHHhcCCCCCEEeCCCCCCCChHHHH
Q 003270 188 IRCPQLEHLSLKRSNMA--------QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLR 256 (835)
Q Consensus 188 ~~l~~L~~L~l~~~~i~--------~~~~~~~~L~~L~l~~~~~l~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~ 256 (835)
+..+.|+.+.++.|.|. ..+..|++|++|++.+|. ++.. .+...+..+++|++|++++|- +.+.+..
T Consensus 182 ~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~ 259 (382)
T KOG1909|consen 182 QSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAI 259 (382)
T ss_pred HhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeecccccc-cccccHH
Confidence 45789999999999775 567899999999999995 4432 344567788999999999998 7766555
Q ss_pred HH----HHhCCCCcEEecCCCC-------CCCccccCCCCCcEEecCCCCCC
Q 003270 257 EI----ALSCANLRILNSSYCP-------NISLESVRLPMLTVLQLHSCEGI 297 (835)
Q Consensus 257 ~~----~~~~~~L~~L~l~~~~-------~l~~~~~~~~~L~~L~l~~~~~~ 297 (835)
++ ....+.|+.|++.+|. .+.......+.|+.|++++| .+
T Consensus 260 a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l 310 (382)
T KOG1909|consen 260 AFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RL 310 (382)
T ss_pred HHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cc
Confidence 54 4457899999999997 12233446899999999998 55
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.7e-10 Score=109.74 Aligned_cols=191 Identities=17% Similarity=0.273 Sum_probs=114.2
Q ss_pred HHHHHhcC-CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccc
Q 003270 90 FEDVCQRY-PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI 168 (835)
Q Consensus 90 ~~~~~~~~-~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 168 (835)
+..++..| .+++++|++........+...++.|.+|+.|.+.++.+.+.+...+++-.+|+.|+++.+.- +.
T Consensus 176 lae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG---~t---- 248 (419)
T KOG2120|consen 176 LAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSG---FT---- 248 (419)
T ss_pred hhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccc---cc----
Confidence 44444444 36899999995433445666789999999999999999999999999999999999998741 11
Q ss_pred cCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhc-CCCCCEEeCCCC
Q 003270 169 NHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATS-CPQLESLDMSNC 247 (835)
Q Consensus 169 ~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~-~~~L~~L~L~~~ 247 (835)
.|...-.+.+|+.|.+|+++.|...+ ..+...+.+ -++|+.|+++|+
T Consensus 249 -------------------------------~n~~~ll~~scs~L~~LNlsWc~l~~-~~Vtv~V~hise~l~~LNlsG~ 296 (419)
T KOG2120|consen 249 -------------------------------ENALQLLLSSCSRLDELNLSWCFLFT-EKVTVAVAHISETLTQLNLSGY 296 (419)
T ss_pred -------------------------------hhHHHHHHHhhhhHhhcCchHhhccc-hhhhHHHhhhchhhhhhhhhhh
Confidence 12233445555555555555553222 222222222 145555555555
Q ss_pred CC-CChHHHHHHHHhCCCCcEEecCCCCCCCcc----ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCC
Q 003270 248 SC-VSDESLREIALSCANLRILNSSYCPNISLE----SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319 (835)
Q Consensus 248 ~~-l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 319 (835)
.. +.+..+..+...|++|.+||+++|..+.+. +.+++.|++|.++.|..+.....-.+...+.|.+|++.+|
T Consensus 297 rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 297 RRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 31 333344444445566666666655544332 3355666666666655554444444455556666666554
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.97 E-value=4.6e-10 Score=112.83 Aligned_cols=183 Identities=21% Similarity=0.136 Sum_probs=87.6
Q ss_pred hhhhccccceeeecCccccC---chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH
Q 003270 572 SLRSLQNLTMLDLSYTFLTN---LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 648 (835)
Q Consensus 572 ~~~~l~~L~~L~Ls~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~ 648 (835)
....|++++.||||.|-+.. +......+++|+.|+++.|. +......... ..+++|+.|.++.|.++-..+...
T Consensus 141 ~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nr-l~~~~~s~~~--~~l~~lK~L~l~~CGls~k~V~~~ 217 (505)
T KOG3207|consen 141 YSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNR-LSNFISSNTT--LLLSHLKQLVLNSCGLSWKDVQWI 217 (505)
T ss_pred hhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhccccccc-ccCCccccch--hhhhhhheEEeccCCCCHHHHHHH
Confidence 34455555555555555553 22234455566666666555 2211111100 235566666666666665455555
Q ss_pred HhhCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccc
Q 003270 649 LAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQAR 728 (835)
Q Consensus 649 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~ 728 (835)
+..+|+|+.|++..|..+... .....-++.|+.|++++.+.+..-..+..++
T Consensus 218 ~~~fPsl~~L~L~~N~~~~~~----------------------------~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~ 269 (505)
T KOG3207|consen 218 LLTFPSLEVLYLEANEIILIK----------------------------ATSTKILQTLQELDLSNNNLIDFDQGYKVGT 269 (505)
T ss_pred HHhCCcHHHhhhhccccccee----------------------------cchhhhhhHHhhccccCCccccccccccccc
Confidence 556666666666665421100 0000113445566666555444433455666
Q ss_pred cCccceEeccCCC--Cccccc-------cccccccEEecccccc--hhhhh--hcCCccceeecccCcCC
Q 003270 729 CFHLSSLNLSLSA--NLKEVD-------VACFNLCFLNLSNCCS--LETLK--LDCPKLTSLFLQSCNID 785 (835)
Q Consensus 729 ~~~L~~L~l~~~~--~l~~~~-------~~~~~L~~L~l~~c~~--l~~l~--~~~~~L~~L~l~~~~i~ 785 (835)
++.|+.|+++.++ .+...+ -.+++|+.|.+++++- ..++- ..+++|+.|.+..+.++
T Consensus 270 l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 270 LPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 6777777666532 111111 1345566666655542 22222 13456666665555544
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.2e-09 Score=121.25 Aligned_cols=339 Identities=19% Similarity=0.241 Sum_probs=191.7
Q ss_pred eeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCc--CcEEEcC-----------------------
Q 003270 77 CLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRN--LEALTLG----------------------- 131 (835)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~--L~~L~l~----------------------- 131 (835)
.++|++.+...+.|+.+|+.||.-.+++... .+..|++++|-.-.. -+..+.+
T Consensus 402 klSyd~L~~~lK~CFLycalFPED~~I~~e~--Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~ 479 (889)
T KOG4658|consen 402 KLSYDNLPEELKSCFLYCALFPEDYEIKKEK--LIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKE 479 (889)
T ss_pred hccHhhhhHHHHHHHHhhccCCcccccchHH--HHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhccccccee
Confidence 5678887767899999999999999998887 677777776532211 1111111
Q ss_pred CcccChhhHH---hhcC--CCCCCEEEecC-CCCCcccccccccCCcccEEeccCcccccccc--CCCCCcEEEecccc-
Q 003270 132 RGQLGDAFFH---ALAD--CSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMRVSI--RCPQLEHLSLKRSN- 202 (835)
Q Consensus 132 ~~~i~~~~~~---~l~~--~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~l~~L~~L~l~~~~- 202 (835)
.+.+.|...+ ..+. ..+.+..-... .... ..|. .......|.+.+-+|.+..+.. ..++|++|-+..|.
T Consensus 480 ~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~-~~~~-~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~ 557 (889)
T KOG4658|consen 480 TVKMHDVVREMALWIASDFGKQEENQIVSDGVGLS-EIPQ-VKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSD 557 (889)
T ss_pred EEEeeHHHHHHHHHHhccccccccceEEECCcCcc-cccc-ccchhheeEEEEeccchhhccCCCCCCccceEEEeecch
Confidence 1122222111 0110 11112111111 1111 1222 2334678888888888766543 57789999998885
Q ss_pred -hH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---
Q 003270 203 -MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--- 274 (835)
Q Consensus 203 -i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--- 274 (835)
+. +.+..+|.|++||+++|..+. .+|..++++-+||+|+++++. +. ..|..+. ++..|.+|++..+.
T Consensus 558 ~l~~is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~-I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~ 632 (889)
T KOG4658|consen 558 WLLEISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTG-IS-HLPSGLG-NLKKLIYLNLEVTGRLE 632 (889)
T ss_pred hhhhcCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCC-cc-ccchHHH-HHHhhheeccccccccc
Confidence 33 558889999999999986555 789999999999999999998 65 6677776 88999999999887
Q ss_pred CCCccccCCCCCcEEecCCCC-CCChhhHHHhhhccCccEEEccCCCccc-cccccCcccceeeccccccccchhhcccc
Q 003270 275 NISLESVRLPMLTVLQLHSCE-GITSASMAAISHSYMLEVLELDNCNLLT-SVSLELPRLQNIRLVHCRKFADLNLRAMM 352 (835)
Q Consensus 275 ~l~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~-~~~~~~~~L~~L~~~~~~~l~~l~l~~~~ 352 (835)
.++.....+.+|++|.+..-. ..+......+..+.+|+.+......... .-.....++..+... +.+.+..
T Consensus 633 ~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~-------l~~~~~~ 705 (889)
T KOG4658|consen 633 SIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQS-------LSIEGCS 705 (889)
T ss_pred cccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHh-------hhhcccc
Confidence 333344468999999998742 2233334445555666665554433200 000111222211111 0111111
Q ss_pred cc--eeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecC
Q 003270 353 LS--SIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 430 (835)
Q Consensus 353 l~--~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 430 (835)
.. ...+..+.+|+.|.+.++.+............... .++++..+.+.+|....+..+. ...|+|+.|.+..
T Consensus 706 ~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~-~f~~l~~~~~~~~~~~r~l~~~-----~f~~~L~~l~l~~ 779 (889)
T KOG4658|consen 706 KRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLL-CFPNLSKVSILNCHMLRDLTWL-----LFAPHLTSLSLVS 779 (889)
T ss_pred cceeecccccccCcceEEEEcCCCchhhcccccccchhh-hHHHHHHHHhhccccccccchh-----hccCcccEEEEec
Confidence 11 11566777788887777666532221111111100 1234444445555444433222 2346777777777
Q ss_pred CCCCccc
Q 003270 431 CEGLTVV 437 (835)
Q Consensus 431 ~~~l~~~ 437 (835)
|..++.+
T Consensus 780 ~~~~e~~ 786 (889)
T KOG4658|consen 780 CRLLEDI 786 (889)
T ss_pred ccccccC
Confidence 6655443
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.4e-10 Score=112.32 Aligned_cols=129 Identities=26% Similarity=0.276 Sum_probs=74.3
Q ss_pred cCCCCCcEEEecccchH-----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCCh-HHHHHHHHh
Q 003270 188 IRCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD-ESLREIALS 261 (835)
Q Consensus 188 ~~l~~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~ 261 (835)
..+|+|+.|+++.|.+. ..-..+++|+.|.+++| +++...+...+..+|+|+.|++.+|..+.- ..... .
T Consensus 169 eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~C-Gls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~---i 244 (505)
T KOG3207|consen 169 EQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSC-GLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK---I 244 (505)
T ss_pred HhcccchhcccccccccCCccccchhhhhhhheEEeccC-CCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh---h
Confidence 34555555555555443 11224567777777777 466666666667777777777777741221 11111 3
Q ss_pred CCCCcEEecCCCCCCC----ccccCCCCCcEEecCCCCCCChhhHHH------hhhccCccEEEccCCCc
Q 003270 262 CANLRILNSSYCPNIS----LESVRLPMLTVLQLHSCEGITSASMAA------ISHSYMLEVLELDNCNL 321 (835)
Q Consensus 262 ~~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~------l~~~~~L~~L~l~~~~~ 321 (835)
+..|++|||++|.-+. ...+.++.|+.|.+..+ ++.+..... ...+++|+.|++..|++
T Consensus 245 ~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~t-gi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I 313 (505)
T KOG3207|consen 245 LQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSST-GIASIAEPDVESLDKTHTFPKLEYLNISENNI 313 (505)
T ss_pred hhHHhhccccCCcccccccccccccccchhhhhcccc-CcchhcCCCccchhhhcccccceeeecccCcc
Confidence 4567777777776332 23556777777777765 444332222 23357777777777765
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=3.8e-09 Score=97.30 Aligned_cols=106 Identities=23% Similarity=0.202 Sum_probs=43.8
Q ss_pred CCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHH-hccccccEEecccccccchhhHHHHHhcCCCCC
Q 003270 551 CPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVF-ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPA 629 (835)
Q Consensus 551 ~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~-~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~ 629 (835)
+.+|+.|++++|..... +.+..++.|++|++++|.++.+.+.+ ..+++|++|.+++|+ |.+... +..+..+++
T Consensus 41 l~~L~~L~Ls~N~I~~l---~~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~-I~~l~~--l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQITKL---EGLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNK-ISDLNE--LEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS--S-----TT----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCC--CGGGGG-TT
T ss_pred hcCCCEEECCCCCCccc---cCccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCc-CCChHH--hHHHHcCCC
Confidence 45555556655554432 34556777777777777777765544 457777777777776 654321 223456777
Q ss_pred ccEEeCCCcccchH--HHHHHHhhCCCccEEEccC
Q 003270 630 LQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 630 L~~L~l~~n~~~~~--~~~~~l~~~~~L~~L~l~~ 662 (835)
|+.|++.+|.++.. .-...+..+|+|+.||-..
T Consensus 115 L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~ 149 (175)
T PF14580_consen 115 LRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD 149 (175)
T ss_dssp --EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred cceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence 88888887777642 2334466788888887654
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.3e-09 Score=96.95 Aligned_cols=133 Identities=23% Similarity=0.218 Sum_probs=53.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++.+++.|++.+|.++. +...-..+.+|+.|++++| .++. ++ .+..++.|+.|++++|...+..
T Consensus 15 ~~n~~~~~~L~L~~n~I~~--------Ie~L~~~l~~L~~L~Ls~N-~I~~--l~-~l~~L~~L~~L~L~~N~I~~i~-- 80 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST--------IENLGATLDKLEVLDLSNN-QITK--LE-GLPGLPRLKTLDLSNNRISSIS-- 80 (175)
T ss_dssp -----------------------------S--TT-TT--EEE-TTS---S----T-T----TT--EEE--SS---S-C--
T ss_pred ccccccccccccccccccc--------ccchhhhhcCCCEEECCCC-CCcc--cc-CccChhhhhhcccCCCCCCccc--
Confidence 6778889999999999853 3221125788999999999 5654 33 3667899999999999865431
Q ss_pred Hhh-hhccccceeeecCccccCchH--HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCc
Q 003270 571 YSL-RSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG 638 (835)
Q Consensus 571 ~~~-~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n 638 (835)
+.+ ..+++|++|++++|++..+.. .+..+++|+.|++.+|| ++...--..+-+..+|+|+.||-..-
T Consensus 81 ~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V 150 (175)
T PF14580_consen 81 EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDV 150 (175)
T ss_dssp HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEET
T ss_pred cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEc
Confidence 234 468999999999999987533 67789999999999999 76543322223466899999987553
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4e-09 Score=100.61 Aligned_cols=135 Identities=23% Similarity=0.170 Sum_probs=105.6
Q ss_pred cccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcc
Q 003270 520 DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESC 599 (835)
Q Consensus 520 ~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~ 599 (835)
......+.|+++|+|+| .++ .+-....-.|.++.|++++|.... ...+..+++|+.||||+|.++.+..+-..+
T Consensus 278 ~~~dTWq~LtelDLS~N-~I~--~iDESvKL~Pkir~L~lS~N~i~~---v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KL 351 (490)
T KOG1259|consen 278 VSADTWQELTELDLSGN-LIT--QIDESVKLAPKLRRLILSQNRIRT---VQNLAELPQLQLLDLSGNLLAECVGWHLKL 351 (490)
T ss_pred EecchHhhhhhcccccc-chh--hhhhhhhhccceeEEeccccceee---ehhhhhcccceEeecccchhHhhhhhHhhh
Confidence 33445677999999998 343 245556678999999999998654 345888999999999999999876666678
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
.++++|.+++|. +.+. ..++++-+|..||+++|+|....--..++.++-|+.+.+.+||--
T Consensus 352 GNIKtL~La~N~-iE~L-----SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~ 412 (490)
T KOG1259|consen 352 GNIKTLKLAQNK-IETL-----SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA 412 (490)
T ss_pred cCEeeeehhhhh-Hhhh-----hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence 899999999987 5533 334678899999999999977545566888999999999999853
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.5e-08 Score=114.06 Aligned_cols=250 Identities=31% Similarity=0.470 Sum_probs=121.4
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCC-CCcCchh---hHhhhhccccceeeecCcc-ccC--chHHHh
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSC-QSIGPDG---LYSLRSLQNLTMLDLSYTF-LTN--LEPVFE 597 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~---~~~~~~l~~L~~L~Ls~~~-~~~--l~~~~~ 597 (835)
++.|+.+.+..|..+.+.++......++.|+.|++++| ......+ ......+.+|+.|+++++. +++ +.....
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666665655555555566666666666652 2222211 1223344555666666555 442 222233
Q ss_pred ccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCccc-chHHHHHHHhhCCCccEEEccCCCCCcccccccccc
Q 003270 598 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL-CQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGC 676 (835)
Q Consensus 598 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 676 (835)
.|++|++|.+.+|..+++.+...+. ..++.|++|++++|.. ++..+......|++|+++.+..+..
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~--~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------- 333 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIA--ERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------- 333 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHH--HhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC-----------
Confidence 3556666665555555555555442 3355566666665532 2333444444455555544443321
Q ss_pred CCCCCCccccccccCCCCCcccccCccccccccccccCCCCcc--ccccCcccccCccceEeccCCCCcccccccccccc
Q 003270 677 QPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIR--KVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLC 754 (835)
Q Consensus 677 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~--~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~ 754 (835)
+..++.+.+.++.... ....-....|++++.+.+..+. ..... .
T Consensus 334 ---------------------------c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~------~ 379 (482)
T KOG1947|consen 334 ---------------------------CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLG------L 379 (482)
T ss_pred ---------------------------CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhh-ccCcc------h
Confidence 0111112222211111 0000012233333333333333 21111 1
Q ss_pred EEecccccch-hhhhh---cCCccceeecccCc-CChhHHHHHHhcCCCcceeecccccCCCchHHHHHHHh
Q 003270 755 FLNLSNCCSL-ETLKL---DCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAA 821 (835)
Q Consensus 755 ~L~l~~c~~l-~~l~~---~~~~L~~L~l~~~~-i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~ 821 (835)
.+.+.+|+.+ ..+.. .+.+++.|+++.|. .++..+-.....+..++.+++++|+.+.......+...
T Consensus 380 ~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 451 (482)
T KOG1947|consen 380 ELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVITLKSLEGFASN 451 (482)
T ss_pred HHHhcCCcccchHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcccccchhhhhhhcc
Confidence 3555666666 33331 23448888888888 55454443223377888888888888887766655444
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=8.1e-08 Score=108.17 Aligned_cols=258 Identities=30% Similarity=0.449 Sum_probs=170.7
Q ss_pred CCcceEecccCCCCcc-chhhhhhhcCCCccEEeccCCCCcCchh-hHhhhhccccceeeecCc-cc-cC----chHHHh
Q 003270 526 PLLTSLDASFCSQLKD-DCLSATTTSCPLIESLILMSCQSIGPDG-LYSLRSLQNLTMLDLSYT-FL-TN----LEPVFE 597 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~Ls~~-~~-~~----l~~~~~ 597 (835)
..++.+.+..+..... .........++.|+.+.+.+|..+...+ ......++.|++|+++++ .. .. ......
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 240 (482)
T KOG1947|consen 161 ANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLS 240 (482)
T ss_pred HHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhh
Confidence 3455555554432222 2233445568999999999998887654 355678899999999983 22 21 223566
Q ss_pred ccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcc-cchHHHHHHHhhCCCccEEEccCCCCCcccccccccc
Q 003270 598 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT-LCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGC 676 (835)
Q Consensus 598 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~-~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 676 (835)
.|++|+.+++++|..+++.....+.. .|++|+.|.+.+|. +++.++......|++|++|++++|..+.+.
T Consensus 241 ~~~~L~~l~l~~~~~isd~~l~~l~~--~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~------- 311 (482)
T KOG1947|consen 241 ICRKLKSLDLSGCGLVTDIGLSALAS--RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDS------- 311 (482)
T ss_pred hcCCcCccchhhhhccCchhHHHHHh--hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHH-------
Confidence 78999999999999899888887743 38999999999887 888889898999999999999999876332
Q ss_pred CCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCCccc-c-----cccc
Q 003270 677 QPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKE-V-----DVAC 750 (835)
Q Consensus 677 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~-~-----~~~~ 750 (835)
.+..+ ..+|++++.+.+.....|..++.+.+.++..... . ...+
T Consensus 312 -----------------------------~l~~~-~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~ 361 (482)
T KOG1947|consen 312 -----------------------------GLEAL-LKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSC 361 (482)
T ss_pred -----------------------------HHHHH-HHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcC
Confidence 13333 3445555554333344455566666555443331 1 1234
Q ss_pred ccccEEecccccchhhhhhcCCccceeecccCc-CChhHHHHHHhcCCCcceeecccccCCCchHHHHHHHhCCcchhhh
Q 003270 751 FNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN-IDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIF 829 (835)
Q Consensus 751 ~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~~-i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~p~l~~l~ 829 (835)
+.++.+.+..|. ..... ..+.+.+|+ ++ .++......+..++.|+++.|...++..+......|..++.+.
T Consensus 362 ~~l~~~~l~~~~-~~~~~------~~~~l~gc~~l~-~~l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~ 433 (482)
T KOG1947|consen 362 PKLTDLSLSYCG-ISDLG------LELSLRGCPNLT-ESLELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLD 433 (482)
T ss_pred CCcchhhhhhhh-ccCcc------hHHHhcCCcccc-hHHHHHhccCCccceEecccCccccccchHHHhhhhhccccCC
Confidence 444444444443 11111 146667777 66 6677666677679999999999988887777765565555554
Q ss_pred c
Q 003270 830 S 830 (835)
Q Consensus 830 ~ 830 (835)
+
T Consensus 434 ~ 434 (482)
T KOG1947|consen 434 L 434 (482)
T ss_pred c
Confidence 3
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-08 Score=93.85 Aligned_cols=83 Identities=27% Similarity=0.291 Sum_probs=58.9
Q ss_pred hhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC
Q 003270 574 RSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 653 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 653 (835)
..+..|+++|||+|.|+.+.+++.-.|.++.|++++|. +....- + ..+++|+.||+++|.++. +..+=..+-
T Consensus 281 dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~-i~~v~n--L---a~L~~L~~LDLS~N~Ls~--~~Gwh~KLG 352 (490)
T KOG1259|consen 281 DTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNR-IRTVQN--L---AELPQLQLLDLSGNLLAE--CVGWHLKLG 352 (490)
T ss_pred chHhhhhhccccccchhhhhhhhhhccceeEEeccccc-eeeehh--h---hhcccceEeecccchhHh--hhhhHhhhc
Confidence 34567888888888888887777778888888888877 554432 2 457788888888887764 334444566
Q ss_pred CccEEEccCCC
Q 003270 654 HLTHVSLNGCG 664 (835)
Q Consensus 654 ~L~~L~l~~~~ 664 (835)
++++|.+.+|.
T Consensus 353 NIKtL~La~N~ 363 (490)
T KOG1259|consen 353 NIKTLKLAQNK 363 (490)
T ss_pred CEeeeehhhhh
Confidence 77777777763
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.52 E-value=8.3e-07 Score=84.02 Aligned_cols=182 Identities=20% Similarity=0.283 Sum_probs=105.3
Q ss_pred HHHHHHhcCCCeeEEEccCCcchhh----HHHHHHhhCCcCcEEEcCCcccC---hhh-------HHhhcCCCCCCEEEe
Q 003270 89 QFEDVCQRYPNATEVNIYGAPAIHL----LVMKAVSLLRNLEALTLGRGQLG---DAF-------FHALADCSMLKSLNV 154 (835)
Q Consensus 89 ~~~~~~~~~~~l~~L~l~~~~~~~~----~~~~~l~~~~~L~~L~l~~~~i~---~~~-------~~~l~~~~~L~~L~l 154 (835)
.+...+.....++.++++| |.+.. |+...+.+-.+|+..+++.-... +.+ .+++.+||+|+..++
T Consensus 21 ~v~eel~~~d~~~evdLSG-NtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~L 99 (388)
T COG5238 21 GVVEELEMMDELVEVDLSG-NTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDL 99 (388)
T ss_pred HHHHHHHhhcceeEEeccC-CcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeec
Confidence 3444455567788888888 45554 44455566677888888754322 222 345567899999999
Q ss_pred cCCCCCccccc----ccccCCcccEEeccCcccccccc-----------------CCCCCcEEEecccchH--------H
Q 003270 155 NDATLGNGVQE----IPINHDQLRRLEITKCRVMRVSI-----------------RCPQLEHLSLKRSNMA--------Q 205 (835)
Q Consensus 155 ~~~~~~~~~~~----~~~~l~~L~~L~l~~~~~~~~~~-----------------~l~~L~~L~l~~~~i~--------~ 205 (835)
++|.+....|+ .+..-+.|+||.+++|.+..+.+ +-|.|++.....|.+. .
T Consensus 100 SDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~ 179 (388)
T COG5238 100 SDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAA 179 (388)
T ss_pred cccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHH
Confidence 99888766554 34556888888888887765432 3466666666665443 1
Q ss_pred HhhcCCCCcEEeecCCCCCCHHHHH----HHHhcCCCCCEEeCCCCCCCChHHHHHHHH---hCCCCcEEecCCC
Q 003270 206 AVLNCPLLHLLDIASCHKLSDAAIR----LAATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYC 273 (835)
Q Consensus 206 ~~~~~~~L~~L~l~~~~~l~~~~l~----~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~ 273 (835)
.+..-.+|+++.+..| .+...++. ..+..+++|+.||++.|. ++..+...++. .++.|++|.+.+|
T Consensus 180 ~l~sh~~lk~vki~qN-gIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDC 252 (388)
T COG5238 180 LLESHENLKEVKIQQN-GIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDC 252 (388)
T ss_pred HHHhhcCceeEEeeec-CcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccch
Confidence 2223346666666665 34433222 123445666666666665 44333333321 2333444444444
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-07 Score=109.06 Aligned_cols=125 Identities=16% Similarity=0.160 Sum_probs=70.8
Q ss_pred hCCcCcEEEcCCcc--cChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc---CCCCCcE
Q 003270 121 LLRNLEALTLGRGQ--LGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI---RCPQLEH 195 (835)
Q Consensus 121 ~~~~L~~L~l~~~~--i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~---~l~~L~~ 195 (835)
.+++|++|-+.+|. +.....+.|..++.|++||+++|.-.+.+|+.++++-+||+|+++++.+..++. ++..|.+
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~ 622 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIY 622 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhhe
Confidence 34467777776664 333334446667777777777776666777777777777777777777665542 4555566
Q ss_pred EEecccch----HHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCC
Q 003270 196 LSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 245 (835)
Q Consensus 196 L~l~~~~i----~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~ 245 (835)
|++..+.- +.....+++||+|.+..-..-.+...-..+.++.+|+.+...
T Consensus 623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~ 676 (889)
T KOG4658|consen 623 LNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT 676 (889)
T ss_pred eccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence 66555432 234444666666666553211112222233444555554443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.38 E-value=2.8e-08 Score=103.44 Aligned_cols=153 Identities=22% Similarity=0.177 Sum_probs=119.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..|..|+.+.++.|.+ ..+|..+.++..|++++|+.| ++.. +|..+..|| |+.|.+++|+.... +
T Consensus 94 ~~~f~~Le~liLy~n~~--------r~ip~~i~~L~~lt~l~ls~N-qlS~--lp~~lC~lp-Lkvli~sNNkl~~l--p 159 (722)
T KOG0532|consen 94 ACAFVSLESLILYHNCI--------RTIPEAICNLEALTFLDLSSN-QLSH--LPDGLCDLP-LKVLIVSNNKLTSL--P 159 (722)
T ss_pred HHHHHHHHHHHHHhccc--------eecchhhhhhhHHHHhhhccc-hhhc--CChhhhcCc-ceeEEEecCccccC--C
Confidence 34455666777777776 677888888899999999987 4532 555454444 88999998886654 6
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..++....|..||.+.|++..+|..++++.+|+.|+++.|. +... ++.+ . .-.|..||++.|+++. +|-.|.
T Consensus 160 ~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~-l~~l-p~El---~-~LpLi~lDfScNkis~--iPv~fr 231 (722)
T KOG0532|consen 160 EEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNH-LEDL-PEEL---C-SLPLIRLDFSCNKISY--LPVDFR 231 (722)
T ss_pred cccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhh-hhhC-CHHH---h-CCceeeeecccCceee--cchhhh
Confidence 77888899999999999999999999999999999999988 5544 4443 2 3468899999999974 888899
Q ss_pred hCCCccEEEccCCCC
Q 003270 651 YCTHLTHVSLNGCGN 665 (835)
Q Consensus 651 ~~~~L~~L~l~~~~~ 665 (835)
.+.+|++|-|.+||.
T Consensus 232 ~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 232 KMRHLQVLQLENNPL 246 (722)
T ss_pred hhhhheeeeeccCCC
Confidence 999999999998883
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=4.1e-07 Score=68.55 Aligned_cols=58 Identities=38% Similarity=0.526 Sum_probs=27.6
Q ss_pred ccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcc
Q 003270 578 NLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 639 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~ 639 (835)
+|++|++++|++..+|. .|.++++|++|++++|. ++...+..+ ..+++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~-l~~i~~~~f---~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNN-LTSIPPDAF---SNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSS-ESEEETTTT---TTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCc-cCccCHHHH---cCCCCCCEEeCcCCc
Confidence 44455555555554443 44445555555555444 444433332 444555555555544
|
... |
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.6e-06 Score=98.89 Aligned_cols=101 Identities=13% Similarity=0.174 Sum_probs=85.9
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
.|.++.|...+.. ....++.|++++ +.+.+.++..+..+++|+.|++++|.+.+.+|..++.+++|+.|+
T Consensus 403 ~w~Gv~C~~~~~~---------~~~~v~~L~L~~-n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~Ld 472 (623)
T PLN03150 403 PWSGADCQFDSTK---------GKWFIDGLGLDN-QGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLD 472 (623)
T ss_pred ccccceeeccCCC---------CceEEEEEECCC-CCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEE
Confidence 6999998532211 012489999999 578888889999999999999999999999999999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCcccc
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVM 184 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 184 (835)
+++|.+++.+|+.+..+++|++|++++|.+.
T Consensus 473 Ls~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~ 503 (623)
T PLN03150 473 LSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503 (623)
T ss_pred CCCCCCCCCCchHHhcCCCCCEEECcCCccc
Confidence 9999999999999988888888888887664
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.24 E-value=8e-07 Score=66.94 Aligned_cols=61 Identities=21% Similarity=0.304 Sum_probs=44.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 183 (835)
++|++|++++|.+...-++.|..+++|++|++++|.+....+..+.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888877766667777788888888888877655555677777777777766653
|
... |
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=2e-06 Score=82.64 Aligned_cols=206 Identities=21% Similarity=0.205 Sum_probs=124.6
Q ss_pred ccEEeccCCCCcCchh-hHhh-hhccccceeeecCccccC---chHHHhccccccEEecccccccchhhHHHHHhcCCCC
Q 003270 554 IESLILMSCQSIGPDG-LYSL-RSLQNLTMLDLSYTFLTN---LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 628 (835)
Q Consensus 554 L~~L~l~~~~~~~~~~-~~~~-~~l~~L~~L~Ls~~~~~~---l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 628 (835)
++-+.+.+|. +..+| ...+ ..++.++++||.+|.++. +...+.++|.|+.|+|+.|+ +...+ ..+. ....
T Consensus 47 ~ellvln~~~-id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~-L~s~I-~~lp--~p~~ 121 (418)
T KOG2982|consen 47 LELLVLNGSI-IDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS-LSSDI-KSLP--LPLK 121 (418)
T ss_pred hhhheecCCC-CCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc-CCCcc-ccCc--cccc
Confidence 4444455554 22222 2333 356899999999999997 44578899999999999998 65432 1110 1356
Q ss_pred CccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccc
Q 003270 629 ALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQ 708 (835)
Q Consensus 629 ~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~ 708 (835)
+|+.|.+.+..+.-......+..+|.+++|.++.|.--. + ++- ....++-.+.++
T Consensus 122 nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq-~----------n~D--------------d~c~e~~s~~v~ 176 (418)
T KOG2982|consen 122 NLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ-L----------NLD--------------DNCIEDWSTEVL 176 (418)
T ss_pred ceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh-h----------ccc--------------cccccccchhhh
Confidence 899999998877654566778889999999999884110 0 000 000011122345
Q ss_pred cccccCCCCccccccCcccccCccceEeccCCCCccccccccccccEEecccccchhhhh-----hcCCccceeecccCc
Q 003270 709 NLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLK-----LDCPKLTSLFLQSCN 783 (835)
Q Consensus 709 ~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~-----~~~~~L~~L~l~~~~ 783 (835)
+++..+|+..... +...+...++++..+-+.+|| +++.. +.+|++.-|+++.++
T Consensus 177 tlh~~~c~~~~w~--------------------~~~~l~r~Fpnv~sv~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~~ 235 (418)
T KOG2982|consen 177 TLHQLPCLEQLWL--------------------NKNKLSRIFPNVNSVFVCEGP-LKTESSEKGSEPFPSLSCLNLGANN 235 (418)
T ss_pred hhhcCCcHHHHHH--------------------HHHhHHhhcccchheeeecCc-ccchhhcccCCCCCcchhhhhcccc
Confidence 5555555432221 111223346667777777775 23322 346777788888888
Q ss_pred CChhHHHHHHhcCCCcceeecccccCC
Q 003270 784 IDEEGVESAITQCGMLETLDVRFCPKI 810 (835)
Q Consensus 784 i~~~~l~~~~~~~~~L~~l~l~~c~~l 810 (835)
|..=.--..+.+|++|..|.++.+|..
T Consensus 236 idswasvD~Ln~f~~l~dlRv~~~Pl~ 262 (418)
T KOG2982|consen 236 IDSWASVDALNGFPQLVDLRVSENPLS 262 (418)
T ss_pred cccHHHHHHHcCCchhheeeccCCccc
Confidence 742223345778888888888888743
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=3.1e-06 Score=96.49 Aligned_cols=108 Identities=23% Similarity=0.260 Sum_probs=79.0
Q ss_pred ccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccE
Q 003270 554 IESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632 (835)
Q Consensus 554 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~ 632 (835)
++.|++++|...+.. +..++.+++|+.|+|++|.+.+ +|..++.+++|+.|++++|. +++..+..+ +.+++|+.
T Consensus 420 v~~L~L~~n~L~g~i-p~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-lsg~iP~~l---~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-FNGSIPESL---GQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccC-CHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-CCCCCchHH---hcCCCCCE
Confidence 666777777654443 5677888888888888888874 77778888888888888887 777766665 67788888
Q ss_pred EeCCCcccchHHHHHHHhh-CCCccEEEccCCCCCc
Q 003270 633 LDLSYGTLCQSAIEELLAY-CTHLTHVSLNGCGNMH 667 (835)
Q Consensus 633 L~l~~n~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~ 667 (835)
|++++|++++ .+|..+.. ..++..+++.+|+.+.
T Consensus 495 L~Ls~N~l~g-~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 495 LNLNGNSLSG-RVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EECcCCcccc-cCChHHhhccccCceEEecCCcccc
Confidence 8888888877 56666654 3466778888776543
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.2e-06 Score=93.38 Aligned_cols=189 Identities=22% Similarity=0.277 Sum_probs=119.9
Q ss_pred EEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCC-cccEEeccCcccccc---ccCCCCCcEEEecccc
Q 003270 127 ALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHD-QLRRLEITKCRVMRV---SIRCPQLEHLSLKRSN 202 (835)
Q Consensus 127 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~---~~~l~~L~~L~l~~~~ 202 (835)
.+++..+.+..... .+...+.++.|++.+|.++ .++....... +|+.|++++|.+..+ ...+++|+.|++++|+
T Consensus 97 ~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~ 174 (394)
T COG4886 97 SLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFND 174 (394)
T ss_pred eeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchhhhhhhhhccccccccccCCch
Confidence 46666665532222 3334567777777777764 3555555553 778888888777765 2467788888888877
Q ss_pred hHHHh---hcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCC
Q 003270 203 MAQAV---LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NIS 277 (835)
Q Consensus 203 i~~~~---~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~ 277 (835)
+.... +..+.|+.|++++| ++. .+|........|++|.+++|..+. .+..+. .+.++..+.+.++. .++
T Consensus 175 l~~l~~~~~~~~~L~~L~ls~N-~i~--~l~~~~~~~~~L~~l~~~~N~~~~--~~~~~~-~~~~l~~l~l~~n~~~~~~ 248 (394)
T COG4886 175 LSDLPKLLSNLSNLNNLDLSGN-KIS--DLPPEIELLSALEELDLSNNSIIE--LLSSLS-NLKNLSGLELSNNKLEDLP 248 (394)
T ss_pred hhhhhhhhhhhhhhhheeccCC-ccc--cCchhhhhhhhhhhhhhcCCccee--cchhhh-hcccccccccCCceeeecc
Confidence 76322 27777888888887 455 345554555668888888874122 233333 66667777766665 234
Q ss_pred ccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcccccc
Q 003270 278 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 278 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 326 (835)
...+.++++++|+++++ .+..... ++...++++|+++++......+
T Consensus 249 ~~~~~l~~l~~L~~s~n-~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 249 ESIGNLSNLETLDLSNN-QISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred chhccccccceeccccc-ccccccc--ccccCccCEEeccCccccccch
Confidence 66677777888888775 5554433 6777788888888777655444
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.13 E-value=2e-07 Score=99.88 Aligned_cols=127 Identities=29% Similarity=0.311 Sum_probs=98.3
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccE
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKV 604 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~ 604 (835)
..|...+.++| .+.. +-..+.-++.|+.|++++|++... ..+..|+.|+.|||++|.+.-+|. ...+|. |..
T Consensus 164 n~L~~a~fsyN-~L~~--mD~SLqll~ale~LnLshNk~~~v---~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 164 NKLATASFSYN-RLVL--MDESLQLLPALESLNLSHNKFTKV---DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hhHhhhhcchh-hHHh--HHHHHHHHHHhhhhccchhhhhhh---HHHHhcccccccccccchhccccccchhhhh-hee
Confidence 45667777777 3432 445566778899999999987653 478889999999999999998877 555666 999
Q ss_pred EecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 605 LKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 605 L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
|++++|. ++.. -.+.++.+|+.||+++|-+++..--+.+..+..|+.|++.|||-
T Consensus 237 L~lrnN~-l~tL-----~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 237 LNLRNNA-LTTL-----RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred eeecccH-HHhh-----hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 9999988 5533 23467889999999999887754445677788999999999884
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=6.6e-06 Score=93.34 Aligned_cols=147 Identities=22% Similarity=0.339 Sum_probs=91.6
Q ss_pred CcCcEEEcCCcc-cChhhHHhhc-CCCCCCEEEecCCCCC-cccccccccCCcccEEeccCcccccccc--CCCCCcEEE
Q 003270 123 RNLEALTLGRGQ-LGDAFFHALA-DCSMLKSLNVNDATLG-NGVQEIPINHDQLRRLEITKCRVMRVSI--RCPQLEHLS 197 (835)
Q Consensus 123 ~~L~~L~l~~~~-i~~~~~~~l~-~~~~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~l~~L~~L~ 197 (835)
.+|++|++++.. +....+..++ .+|+|++|.+++-.+. +.+.....++++|++||++++++..+.+ ++++|++|.
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNLSGISRLKNLQVLS 201 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCcHHHhccccHHHHh
Confidence 568888887753 3444555554 5788888888876553 3345566677788888888777776543 577777777
Q ss_pred ecccchH-----HHhhcCCCCcEEeecCCCCCCHHHHHH----HHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEE
Q 003270 198 LKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRL----AATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 268 (835)
Q Consensus 198 l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l~~----~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L 268 (835)
+.+-.+. ..+-++++|++||++.-....+..+.. .-..+|+|+.||.+++. +.......+...-++|+.+
T Consensus 202 mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~sH~~L~~i 280 (699)
T KOG3665|consen 202 MRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNSHPNLQQI 280 (699)
T ss_pred ccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHhCccHhhh
Confidence 7655444 355667777777777643333221111 11335777777777777 6666666666555555544
Q ss_pred ec
Q 003270 269 NS 270 (835)
Q Consensus 269 ~l 270 (835)
-.
T Consensus 281 ~~ 282 (699)
T KOG3665|consen 281 AA 282 (699)
T ss_pred hh
Confidence 43
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.10 E-value=3.5e-06 Score=80.96 Aligned_cols=186 Identities=19% Similarity=0.204 Sum_probs=98.6
Q ss_pred hhCCcCcEEEcCCcccChh--hHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEE
Q 003270 120 SLLRNLEALTLGRGQLGDA--FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 197 (835)
Q Consensus 120 ~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~ 197 (835)
..++.++.+|+.+|.|++. +...+.++|.|++|+++.|.+...+...+.-..+|++|-+.+..+.--
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~----------- 136 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWT----------- 136 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChh-----------
Confidence 3466777788888877743 555566778888888888877665555444455555555555443210
Q ss_pred ecccchHHHhhcCCCCcEEeecCCC----CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 003270 198 LKRSNMAQAVLNCPLLHLLDIASCH----KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC 273 (835)
Q Consensus 198 l~~~~i~~~~~~~~~L~~L~l~~~~----~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~ 273 (835)
.....+..+|.+++|+++.|. ++.+.... .--+.+++|.+..|..........+.+.++++..+-+..|
T Consensus 137 ----~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e---~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~ 209 (418)
T KOG2982|consen 137 ----QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIE---DWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEG 209 (418)
T ss_pred ----hhhhhhhcchhhhhhhhccchhhhhcccccccc---ccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecC
Confidence 111334444555555444441 00000000 0112344444545541111122223345566666666665
Q ss_pred C--CC--CccccCCCCCcEEecCCCCCCCh-hhHHHhhhccCccEEEccCCCcccc
Q 003270 274 P--NI--SLESVRLPMLTVLQLHSCEGITS-ASMAAISHSYMLEVLELDNCNLLTS 324 (835)
Q Consensus 274 ~--~l--~~~~~~~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~ 324 (835)
+ .. -.....+|.+.-|.+..+ ++.. ....++.+++.|..|.++++++...
T Consensus 210 PlK~~s~ek~se~~p~~~~LnL~~~-~idswasvD~Ln~f~~l~dlRv~~~Pl~d~ 264 (418)
T KOG2982|consen 210 PLKTESSEKGSEPFPSLSCLNLGAN-NIDSWASVDALNGFPQLVDLRVSENPLSDP 264 (418)
T ss_pred cccchhhcccCCCCCcchhhhhccc-ccccHHHHHHHcCCchhheeeccCCccccc
Confidence 4 11 112334566666666664 4443 4557788889999999988876654
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.05 E-value=2.6e-06 Score=92.72 Aligned_cols=150 Identities=28% Similarity=0.314 Sum_probs=107.3
Q ss_pred CCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS 575 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 575 (835)
+|+.++++.|++ ..+|..+..+++|+.|++++| .+.+ ++......++|+.|++++|..... +.....
T Consensus 141 nL~~L~l~~N~i--------~~l~~~~~~l~~L~~L~l~~N-~l~~--l~~~~~~~~~L~~L~ls~N~i~~l--~~~~~~ 207 (394)
T COG4886 141 NLKELDLSDNKI--------ESLPSPLRNLPNLKNLDLSFN-DLSD--LPKLLSNLSNLNNLDLSGNKISDL--PPEIEL 207 (394)
T ss_pred hcccccccccch--------hhhhhhhhccccccccccCCc-hhhh--hhhhhhhhhhhhheeccCCccccC--chhhhh
Confidence 677788888877 555566777888888888887 4544 555455778888888888875443 333355
Q ss_pred ccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCc
Q 003270 576 LQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHL 655 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L 655 (835)
..+|++|.+++|.+...+..+..+.++..+.+.+|+ +... +.. ++.+++++.|++++|.+++ ++. +....++
T Consensus 208 ~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~-~~~~-~~~---~~~l~~l~~L~~s~n~i~~--i~~-~~~~~~l 279 (394)
T COG4886 208 LSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNK-LEDL-PES---IGNLSNLETLDLSNNQISS--ISS-LGSLTNL 279 (394)
T ss_pred hhhhhhhhhcCCcceecchhhhhcccccccccCCce-eeec-cch---hccccccceeccccccccc--ccc-ccccCcc
Confidence 666888888888766666777888888888888877 4432 122 2567778888998888876 333 7778888
Q ss_pred cEEEccCCCCC
Q 003270 656 THVSLNGCGNM 666 (835)
Q Consensus 656 ~~L~l~~~~~~ 666 (835)
+.|+++++...
T Consensus 280 ~~L~~s~n~~~ 290 (394)
T COG4886 280 RELDLSGNSLS 290 (394)
T ss_pred CEEeccCcccc
Confidence 88888887643
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.4e-07 Score=94.80 Aligned_cols=127 Identities=20% Similarity=0.181 Sum_probs=101.8
Q ss_pred CcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhc
Q 003270 497 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 576 (835)
Q Consensus 497 L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 576 (835)
|+.+.+++|++ +.+|..++..+.|..||.+.| ++ ..++..+.++.+|+.|++..|+.... ++.+..
T Consensus 145 Lkvli~sNNkl--------~~lp~~ig~~~tl~~ld~s~n-ei--~slpsql~~l~slr~l~vrRn~l~~l--p~El~~- 210 (722)
T KOG0532|consen 145 LKVLIVSNNKL--------TSLPEEIGLLPTLAHLDVSKN-EI--QSLPSQLGYLTSLRDLNVRRNHLEDL--PEELCS- 210 (722)
T ss_pred ceeEEEecCcc--------ccCCcccccchhHHHhhhhhh-hh--hhchHHhhhHHHHHHHHHhhhhhhhC--CHHHhC-
Confidence 55666777777 777888888899999999998 44 34788889999999999999987655 667774
Q ss_pred cccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcc
Q 003270 577 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 639 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~ 639 (835)
=.|..||+|.|+++.||..|.++..|++|.|.+|+ +..- +.+++.-+...-.++|++.-|+
T Consensus 211 LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNP-LqSP-PAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 211 LPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNP-LQSP-PAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred CceeeeecccCceeecchhhhhhhhheeeeeccCC-CCCC-hHHHHhccceeeeeeecchhcc
Confidence 45889999999999999999999999999999999 7643 5555555666667788887774
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00013 Score=69.62 Aligned_cols=197 Identities=18% Similarity=0.277 Sum_probs=135.1
Q ss_pred ceeeccCCCCCCHHHHHHHHh---cCCCeeEEEccCC--cchhh-------HHHHHHhhCCcCcEEEcCCcccChhhHHh
Q 003270 75 WRCLNFENRKISVEQFEDVCQ---RYPNATEVNIYGA--PAIHL-------LVMKAVSLLRNLEALTLGRGQLGDAFFHA 142 (835)
Q Consensus 75 ~~~l~~~~~~~~~~~~~~~~~---~~~~l~~L~l~~~--~~~~~-------~~~~~l~~~~~L~~L~l~~~~i~~~~~~~ 142 (835)
...+++++..+..+....++. .-.+++..+++.. ....+ .+.+++..|++|+..++++|.+....|..
T Consensus 32 ~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~e~ 111 (388)
T COG5238 32 LVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFPEE 111 (388)
T ss_pred eeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccchH
Confidence 367888888888777776664 4445666666651 11111 23456778999999999999988765554
Q ss_pred ----hcCCCCCCEEEecCCCCCcc----cc---------cccccCCcccEEeccCccccccc--------cCCCCCcEEE
Q 003270 143 ----LADCSMLKSLNVNDATLGNG----VQ---------EIPINHDQLRRLEITKCRVMRVS--------IRCPQLEHLS 197 (835)
Q Consensus 143 ----l~~~~~L~~L~l~~~~~~~~----~~---------~~~~~l~~L~~L~l~~~~~~~~~--------~~l~~L~~L~ 197 (835)
++.-+.|++|.+++|.+... +. ....+-+.|++.....|++-... ..-.+|+++.
T Consensus 112 L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vk 191 (388)
T COG5238 112 LGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKEVK 191 (388)
T ss_pred HHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCceeEE
Confidence 45778999999999986421 11 22334588999999988875432 1236899999
Q ss_pred ecccchH---------HHhhcCCCCcEEeecCCCCCCHH---HHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHh----
Q 003270 198 LKRSNMA---------QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLREIALS---- 261 (835)
Q Consensus 198 l~~~~i~---------~~~~~~~~L~~L~l~~~~~l~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~---- 261 (835)
+..|.|. .-+..+++|++|++.+|. ++-. .+...+...+.|++|.+..|- ++..+..++...
T Consensus 192 i~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~~lrEL~lnDCl-ls~~G~~~v~~~f~e~ 269 (388)
T COG5238 192 IQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWNLLRELRLNDCL-LSNEGVKSVLRRFNEK 269 (388)
T ss_pred eeecCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccchhhhccccchh-hccccHHHHHHHhhhh
Confidence 9999886 235678999999999985 4422 234455667889999999998 777777666533
Q ss_pred -CCCCcEEecCCC
Q 003270 262 -CANLRILNSSYC 273 (835)
Q Consensus 262 -~~~L~~L~l~~~ 273 (835)
.++|+.|...+|
T Consensus 270 ~~p~l~~L~~~Yn 282 (388)
T COG5238 270 FVPNLMPLPGDYN 282 (388)
T ss_pred cCCCccccccchh
Confidence 344555555444
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.85 E-value=2e-05 Score=89.54 Aligned_cols=137 Identities=26% Similarity=0.255 Sum_probs=102.0
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCch--HHHhcccc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE--PVFESCLQ 601 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~--~~~~~~~~ 601 (835)
.+|+|+.|.+++= .+..+.+.....++|+|..|++++++... ...++.+++|+.|.+.+=.+..-. ..+.++++
T Consensus 146 ~LPsL~sL~i~~~-~~~~~dF~~lc~sFpNL~sLDIS~TnI~n---l~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~ 221 (699)
T KOG3665|consen 146 MLPSLRSLVISGR-QFDNDDFSQLCASFPNLRSLDISGTNISN---LSGISRLKNLQVLSMRNLEFESYQDLIDLFNLKK 221 (699)
T ss_pred hCcccceEEecCc-eecchhHHHHhhccCccceeecCCCCccC---cHHHhccccHHHHhccCCCCCchhhHHHHhcccC
Confidence 5899999999984 56666677778889999999999987544 357888899999988887777522 25667899
Q ss_pred ccEEecccccccchh-hHHH-HHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 602 LKVLKLQACKYLTNT-SLES-LYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 602 L~~L~l~~~~~l~~~-~~~~-l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
|+.|++|.-....+. .+.. +.+-..+|.|+.||+|++.+.+..+...+..-++|+.+..-+|.
T Consensus 222 L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~~~~~ 286 (699)
T KOG3665|consen 222 LRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAALDCL 286 (699)
T ss_pred CCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhhhhhh
Confidence 999999976544333 2222 23335689999999999998887777777778888888766554
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=8.7e-05 Score=77.33 Aligned_cols=40 Identities=18% Similarity=0.346 Sum_probs=22.4
Q ss_pred hCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCcccc
Q 003270 391 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 438 (835)
Q Consensus 391 ~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 438 (835)
.|.+++.|++++| .++.. | .-.++|++|.+++|..++.++
T Consensus 50 ~~~~l~~L~Is~c-~L~sL-P------~LP~sLtsL~Lsnc~nLtsLP 89 (426)
T PRK15386 50 EARASGRLYIKDC-DIESL-P------VLPNELTEITIENCNNLTTLP 89 (426)
T ss_pred HhcCCCEEEeCCC-CCccc-C------CCCCCCcEEEccCCCCcccCC
Confidence 3567777777775 55432 1 122357777777666555443
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.2e-05 Score=51.96 Aligned_cols=38 Identities=32% Similarity=0.468 Sum_probs=25.2
Q ss_pred cccceeeecCccccCchHHHhccccccEEecccccccch
Q 003270 577 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTN 615 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~ 615 (835)
++|++|++++|+++.+|+.++++++|+.|++++|+ +++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~-i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNP-ISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC-CSB
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCC-CCC
Confidence 35677777777777776667777777777777776 554
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.55 E-value=9.9e-06 Score=88.24 Aligned_cols=83 Identities=36% Similarity=0.453 Sum_probs=43.1
Q ss_pred hhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH-Hhh
Q 003270 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL-LAY 651 (835)
Q Consensus 573 ~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~-l~~ 651 (835)
+..+++|+.|++++|.|+.+.. +..++.|+.|++++|+ ++... .+..+..|+.+++++|++... ... ...
T Consensus 114 l~~~~~L~~L~ls~N~I~~i~~-l~~l~~L~~L~l~~N~-i~~~~-----~~~~l~~L~~l~l~~n~i~~i--e~~~~~~ 184 (414)
T KOG0531|consen 114 LSSLVNLQVLDLSFNKITKLEG-LSTLTLLKELNLSGNL-ISDIS-----GLESLKSLKLLDLSYNRIVDI--ENDELSE 184 (414)
T ss_pred hhhhhcchheeccccccccccc-hhhccchhhheeccCc-chhcc-----CCccchhhhcccCCcchhhhh--hhhhhhh
Confidence 4455566666666666554422 3334446666666665 43221 223355666666666666542 111 355
Q ss_pred CCCccEEEccCCC
Q 003270 652 CTHLTHVSLNGCG 664 (835)
Q Consensus 652 ~~~L~~L~l~~~~ 664 (835)
+.+++.+++.+|.
T Consensus 185 ~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 185 LISLEELDLGGNS 197 (414)
T ss_pred ccchHHHhccCCc
Confidence 6666666666654
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00017 Score=75.17 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=52.9
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCc-ccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG-TLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n-~~~~~~~~~~l 649 (835)
..+..+.+++.|++++|.+..+|. -..+|++|.+++|.+++.. +..+ .++|+.|++++| .+.. +|
T Consensus 46 ~r~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsL-P~~L-----P~nLe~L~Ls~Cs~L~s--LP--- 111 (426)
T PRK15386 46 PQIEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTL-PGSI-----PEGLEKLTVCHCPEISG--LP--- 111 (426)
T ss_pred HHHHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccC-Cchh-----hhhhhheEccCcccccc--cc---
Confidence 446668999999999999888872 2347999999998877543 2222 457889999888 4432 33
Q ss_pred hhCCCccEEEccC
Q 003270 650 AYCTHLTHVSLNG 662 (835)
Q Consensus 650 ~~~~~L~~L~l~~ 662 (835)
.+|++|++.+
T Consensus 112 ---~sLe~L~L~~ 121 (426)
T PRK15386 112 ---ESVRSLEIKG 121 (426)
T ss_pred ---cccceEEeCC
Confidence 4577777764
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.50 E-value=1.5e-05 Score=86.80 Aligned_cols=123 Identities=20% Similarity=0.307 Sum_probs=71.0
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc--CCCCCcEEEe
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI--RCPQLEHLSL 198 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~--~l~~L~~L~l 198 (835)
.+..++.+.+..|.+.. +...+..+++|+.|++.+|.+.. +...+..+++|++|++++|.|..+.+ .++.|+.|++
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l 147 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNL 147 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccccchhhccchhhhee
Confidence 34455555566665553 23345566777777777776643 32324556677777777776665542 4556666677
Q ss_pred cccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHH-HhcCCCCCEEeCCCCC
Q 003270 199 KRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLA-ATSCPQLESLDMSNCS 248 (835)
Q Consensus 199 ~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~-~~~~~~L~~L~L~~~~ 248 (835)
++|.|. ..+..++.|+.+++++|. +.. +... ...+.+++.+.+.+|.
T Consensus 148 ~~N~i~~~~~~~~l~~L~~l~l~~n~-i~~--ie~~~~~~~~~l~~l~l~~n~ 197 (414)
T KOG0531|consen 148 SGNLISDISGLESLKSLKLLDLSYNR-IVD--IENDELSELISLEELDLGGNS 197 (414)
T ss_pred ccCcchhccCCccchhhhcccCCcch-hhh--hhhhhhhhccchHHHhccCCc
Confidence 666666 334446666677776663 331 2211 3556666666666666
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.42 E-value=1.1e-05 Score=87.03 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=64.6
Q ss_pred eeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccc-cccCCcccEEec
Q 003270 100 ATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEI-PINHDQLRRLEI 178 (835)
Q Consensus 100 l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l 178 (835)
+...+++. |.+. .+.+++.-++.|+.|+|++|++++.. .+..|++|++|||++|.+. .+|.. ..++. |..|.+
T Consensus 166 L~~a~fsy-N~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 166 LATASFSY-NRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred Hhhhhcch-hhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 34444444 2222 34556666777777777777776533 5667777777777777664 23332 22222 666666
Q ss_pred cCcccccccc--CCCCCcEEEecccchH-----HHhhcCCCCcEEeecCCC
Q 003270 179 TKCRVMRVSI--RCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCH 222 (835)
Q Consensus 179 ~~~~~~~~~~--~l~~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~ 222 (835)
.+|.+..+.+ ++.+|+.||+++|-+. ..+..+..|++|+|.+|+
T Consensus 240 rnN~l~tL~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 240 RNNALTTLRGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred cccHHHhhhhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 6665544322 4555666666655444 233444555555555554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.00072 Score=46.32 Aligned_cols=37 Identities=30% Similarity=0.504 Sum_probs=26.2
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCC
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 160 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~ 160 (835)
++|++|++++|.|++ ++..++++++|++|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 467888888888874 5556778888888888888765
|
... |
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.00055 Score=62.71 Aligned_cols=60 Identities=17% Similarity=0.248 Sum_probs=29.7
Q ss_pred cCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccc
Q 003270 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR 185 (835)
Q Consensus 124 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 185 (835)
+...+||++|.+.. .+.|..++.|.+|.+++|+++..-|.....+++|..|.+.+|.+..
T Consensus 43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~ 102 (233)
T KOG1644|consen 43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQE 102 (233)
T ss_pred ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhh
Confidence 34455555555542 1233445555666666665554444444444455555555554443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00096 Score=61.17 Aligned_cols=111 Identities=22% Similarity=0.187 Sum_probs=70.6
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH--HHhcccccc
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLK 603 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L~ 603 (835)
.+...+|+++|.... -..+..++.|.+|.+.+|+.+.- .+.--.-+++|..|.+.+|.+..+.+ -+..|++|+
T Consensus 42 d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~nNrIt~I-~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~ 116 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNNNRITRI-DPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLE 116 (233)
T ss_pred cccceecccccchhh----cccCCCccccceEEecCCcceee-ccchhhhccccceEEecCcchhhhhhcchhccCCccc
Confidence 345567777774222 12345667777888877774432 23333345778888888888776544 466788888
Q ss_pred EEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 604 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
+|.+-+|+ ++...--..+-+..+++|+.||+.+-.-.+
T Consensus 117 ~Ltll~Np-v~~k~~YR~yvl~klp~l~~LDF~kVt~~E 154 (233)
T KOG1644|consen 117 YLTLLGNP-VEHKKNYRLYVLYKLPSLRTLDFQKVTRKE 154 (233)
T ss_pred eeeecCCc-hhcccCceeEEEEecCcceEeehhhhhHHH
Confidence 88888888 654433322334678888888888765544
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.00029 Score=67.47 Aligned_cols=114 Identities=24% Similarity=0.233 Sum_probs=77.7
Q ss_pred hhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCc--ccc-CchHHHhccccccEEecccccccchhhHHH
Q 003270 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT--FLT-NLEPVFESCLQLKVLKLQACKYLTNTSLES 620 (835)
Q Consensus 544 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~--~~~-~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~ 620 (835)
+......+..|+.+.+.++..++. ..+..+++|++|.+|.| ++. +++.....+++|+++++++|+ +.. +..
T Consensus 35 ~~gl~d~~~~le~ls~~n~gltt~---~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~--lst 108 (260)
T KOG2739|consen 35 LGGLTDEFVELELLSVINVGLTTL---TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD--LST 108 (260)
T ss_pred cccccccccchhhhhhhccceeec---ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc--ccc
Confidence 333344555677777777665553 35677889999999999 555 366667778999999999988 664 333
Q ss_pred HHhcCCCCCccEEeCCCcccchH--HHHHHHhhCCCccEEEccCC
Q 003270 621 LYKKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSLNGC 663 (835)
Q Consensus 621 l~~~~~~~~L~~L~l~~n~~~~~--~~~~~l~~~~~L~~L~l~~~ 663 (835)
+..+..+.+|..|++.+|..+.. .-...|.-+++|+.|+-...
T Consensus 109 l~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv 153 (260)
T KOG2739|consen 109 LRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDV 153 (260)
T ss_pred cchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhcccccccc
Confidence 33346678888999988865531 23355666788888776543
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.00019 Score=68.71 Aligned_cols=99 Identities=19% Similarity=0.321 Sum_probs=63.9
Q ss_pred CcccEEeccCcccccc--ccCCCCCcEEEecccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCC
Q 003270 171 DQLRRLEITKCRVMRV--SIRCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSN 246 (835)
Q Consensus 171 ~~L~~L~l~~~~~~~~--~~~l~~L~~L~l~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~ 246 (835)
.+.+.|+..+|.+.++ ..+++.|++|.|+-|.|+ ..+..|++|++|+|..| .+.+-.--..+.++++|+.|.|..
T Consensus 19 ~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN-~I~sldEL~YLknlpsLr~LWL~E 97 (388)
T KOG2123|consen 19 ENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKN-CIESLDELEYLKNLPSLRTLWLDE 97 (388)
T ss_pred HHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhc-ccccHHHHHHHhcCchhhhHhhcc
Confidence 3344444444444443 246777777777777776 67788889999999887 466555456778889999998888
Q ss_pred CCCCChHHH---HHHHHhCCCCcEEec
Q 003270 247 CSCVSDESL---REIALSCANLRILNS 270 (835)
Q Consensus 247 ~~~l~~~~~---~~~~~~~~~L~~L~l 270 (835)
|+.-+..+. ..+...+++|++||=
T Consensus 98 NPCc~~ag~nYR~~VLR~LPnLkKLDn 124 (388)
T KOG2123|consen 98 NPCCGEAGQNYRRKVLRVLPNLKKLDN 124 (388)
T ss_pred CCcccccchhHHHHHHHHcccchhccC
Confidence 774332221 123345677776663
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.00026 Score=67.82 Aligned_cols=82 Identities=22% Similarity=0.227 Sum_probs=53.0
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH--HHhccccc
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQL 602 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L 602 (835)
+.+.+.|+..+| ++.|- .+...++.|+.|.++-|...+ ...+..|+.|++|+|..|.|.++.+ .+.++++|
T Consensus 18 l~~vkKLNcwg~-~L~DI---sic~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDI---SICEKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHHhhhhcccCC-CccHH---HHHHhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 455666777777 55542 223466777777777766443 3466777777777777777776654 56677777
Q ss_pred cEEeccccccc
Q 003270 603 KVLKLQACKYL 613 (835)
Q Consensus 603 ~~L~l~~~~~l 613 (835)
+.|-|..|+..
T Consensus 91 r~LWL~ENPCc 101 (388)
T KOG2123|consen 91 RTLWLDENPCC 101 (388)
T ss_pred hhHhhccCCcc
Confidence 77777777633
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.00056 Score=58.39 Aligned_cols=107 Identities=16% Similarity=0.092 Sum_probs=51.7
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh-hccccceeeecCccccCchHHHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR-SLQNLTMLDLSYTFLTNLEPVFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~ 606 (835)
+-.+++++|+-+--......+.....|+..++++|.+-.. +..|. .++..+.|++++|.++++|..+..++.|+.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~f--p~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKF--PKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLN 106 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhC--CHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence 4455666663111111222233334455556666554332 22332 33456666666666666666666666666666
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
++.|+ +... ++.+ ..+.++-.|+..+|.+.
T Consensus 107 l~~N~-l~~~-p~vi---~~L~~l~~Lds~~na~~ 136 (177)
T KOG4579|consen 107 LRFNP-LNAE-PRVI---APLIKLDMLDSPENARA 136 (177)
T ss_pred cccCc-cccc-hHHH---HHHHhHHHhcCCCCccc
Confidence 66666 3322 2222 12445555555555443
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.0012 Score=56.45 Aligned_cols=103 Identities=24% Similarity=0.304 Sum_probs=51.3
Q ss_pred ccEEeccCCCCcCc-hhhHhhhhccccceeeecCccccCchHHHh-ccccccEEecccccccchhhHHHHHhcCCCCCcc
Q 003270 554 IESLILMSCQSIGP-DGLYSLRSLQNLTMLDLSYTFLTNLEPVFE-SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQ 631 (835)
Q Consensus 554 L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~-~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~ 631 (835)
+..+++++|+.... ..++.+.....|+..+|++|.+...|+.|. ..+.+++|++.+|+ +.+...+ + ..++.|+
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~ne-isdvPeE-~---Aam~aLr 103 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNE-ISDVPEE-L---AAMPALR 103 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhh-hhhchHH-H---hhhHHhh
Confidence 44555556653321 113344444555556666666666555433 23456666666655 5544322 3 4455666
Q ss_pred EEeCCCcccchHHHHHHHhhCCCccEEEccCC
Q 003270 632 ELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663 (835)
Q Consensus 632 ~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~ 663 (835)
.|+++.|.+.. .+.-+..+.++-.|+..+|
T Consensus 104 ~lNl~~N~l~~--~p~vi~~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 104 SLNLRFNPLNA--EPRVIAPLIKLDMLDSPEN 133 (177)
T ss_pred hcccccCcccc--chHHHHHHHhHHHhcCCCC
Confidence 66666665543 2233333445555555444
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.0025 Score=58.66 Aligned_cols=80 Identities=23% Similarity=0.364 Sum_probs=61.6
Q ss_pred CcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEE
Q 003270 193 LEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 268 (835)
Q Consensus 193 L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L 268 (835)
++.+|-++..|. +.+.+++.++.|.+.+|..+.|..+...-+-.++|+.|++++|+.+++.++.-+. .+++|+.|
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr~L 181 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLRRL 181 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhHHH
Confidence 445555555554 5677888888999999988887777666666789999999999989988888777 77888877
Q ss_pred ecCCC
Q 003270 269 NSSYC 273 (835)
Q Consensus 269 ~l~~~ 273 (835)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 77654
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.0021 Score=59.09 Aligned_cols=66 Identities=29% Similarity=0.380 Sum_probs=57.0
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT 587 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~ 587 (835)
+.+++.++.|.+.+|..+.|.++...-+-.++|+.|+|++|+.+++.|...+..+++|+.|.+.+=
T Consensus 121 L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l~~l 186 (221)
T KOG3864|consen 121 LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHLYDL 186 (221)
T ss_pred HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHhcCc
Confidence 345778888999999988888888777778999999999999999999999999999999888753
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.0066 Score=58.45 Aligned_cols=35 Identities=31% Similarity=0.436 Sum_probs=16.7
Q ss_pred cccceeeecCccccCchH--HHhccccccEEeccccc
Q 003270 577 QNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACK 611 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~ 611 (835)
++|+.|++++|++..+.. .+..+.+|..|++.+|+
T Consensus 91 P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 91 PNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred CceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 555555555555443211 23444555555555554
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.012 Score=52.19 Aligned_cols=37 Identities=16% Similarity=0.387 Sum_probs=14.3
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecc
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQ 608 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~ 608 (835)
.+|.++++++.+.+.+ .+..++. .|..+++|+.+.+.
T Consensus 52 ~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 52 NAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEET
T ss_pred eeeecccccccccccc-cccccccccccccccccccccC
Confidence 3444444455555543 2222222 34445555555554
|
|
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.016 Score=34.40 Aligned_cols=24 Identities=29% Similarity=0.534 Sum_probs=19.1
Q ss_pred CCCcceeecccccCCCchHHHHHH
Q 003270 796 CGMLETLDVRFCPKICSTSMGRLR 819 (835)
Q Consensus 796 ~~~L~~l~l~~c~~l~~~~~~~~~ 819 (835)
|++|++|+|++|+.++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577888888888888888777765
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.015 Score=51.70 Aligned_cols=104 Identities=15% Similarity=0.330 Sum_probs=52.0
Q ss_pred hhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCC
Q 003270 548 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGS 626 (835)
Q Consensus 548 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~ 626 (835)
+.++++|+.+.+... +..++..+|.++++|+.+.+.++ +..++. .|.++++|+.+.+.+ . +....... +..
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~-~~~i~~~~---F~~ 79 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-N-LKSIGDNA---FSN 79 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-T-T-EE-TTT---TTT
T ss_pred HhCCCCCCEEEECCC--eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-c-cccccccc---ccc
Confidence 445555666665531 33344556777878888888774 666555 677787888888865 2 33332222 356
Q ss_pred CCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 627 LPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 627 ~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
+++|+.+++..+ +.. .-...|..+ .|+.+.+..
T Consensus 80 ~~~l~~i~~~~~-~~~-i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 80 CTNLKNIDIPSN-ITE-IGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp -TTECEEEETTT--BE-EHTTTTTT--T--EEE-TT
T ss_pred cccccccccCcc-ccE-EchhhhcCC-CceEEEECC
Confidence 778888888654 322 223456666 777777765
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.0021 Score=70.12 Aligned_cols=113 Identities=31% Similarity=0.346 Sum_probs=61.7
Q ss_pred CCCccEEeccCCCCcCchh---hHhhhhccc-cceeeecCccccC-----chHHHhcc-ccccEEecccccccchhhHHH
Q 003270 551 CPLIESLILMSCQSIGPDG---LYSLRSLQN-LTMLDLSYTFLTN-----LEPVFESC-LQLKVLKLQACKYLTNTSLES 620 (835)
Q Consensus 551 ~~~L~~L~l~~~~~~~~~~---~~~~~~l~~-L~~L~Ls~~~~~~-----l~~~~~~~-~~L~~L~l~~~~~l~~~~~~~ 620 (835)
..++++|++.+|..+.... ...+...++ +++|++..|.+.+ +.+.+..+ ..++.++++.|+ +++.....
T Consensus 203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~ 281 (478)
T KOG4308|consen 203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRD 281 (478)
T ss_pred cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHH
Confidence 3445555665555332211 123444455 6667777777663 22344444 566777777777 66665555
Q ss_pred HHh-cCCCCCccEEeCCCcccchHHHH---HHHhhCCCccEEEccCCC
Q 003270 621 LYK-KGSLPALQELDLSYGTLCQSAIE---ELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 621 l~~-~~~~~~L~~L~l~~n~~~~~~~~---~~l~~~~~L~~L~l~~~~ 664 (835)
+.+ +..++.++.+.+++|.+.+.... ........+.++.+.++.
T Consensus 282 L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 282 LAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 543 35566777777777776653322 223334445555555544
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.019 Score=32.45 Aligned_cols=21 Identities=43% Similarity=0.525 Sum_probs=13.5
Q ss_pred ccceeeecCccccCchHHHhc
Q 003270 578 NLTMLDLSYTFLTNLEPVFES 598 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l~~~~~~ 598 (835)
+|++|++++|+++.+|+.|++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777777766665443
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.33 E-value=0.094 Score=27.42 Aligned_cols=15 Identities=60% Similarity=0.649 Sum_probs=6.9
Q ss_pred ccceeeecCccccCc
Q 003270 578 NLTMLDLSYTFLTNL 592 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l 592 (835)
+|++|++++|++..+
T Consensus 2 ~L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSL 16 (17)
T ss_dssp T-SEEEETSS--SSE
T ss_pred ccCEEECCCCCCCCC
Confidence 456666666665544
|
... |
| >smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily | Back alignment and domain information |
|---|
Probab=91.68 E-value=0.26 Score=29.18 Aligned_cols=24 Identities=46% Similarity=1.023 Sum_probs=13.3
Q ss_pred CCCCCEEeCCCCCCCChHHHHHHH
Q 003270 236 CPQLESLDMSNCSCVSDESLREIA 259 (835)
Q Consensus 236 ~~~L~~L~L~~~~~l~~~~~~~~~ 259 (835)
|++|++|++++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345566666666555555555443
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=90.16 E-value=0.13 Score=29.09 Aligned_cols=12 Identities=42% Similarity=0.468 Sum_probs=6.1
Q ss_pred CcEEEcCCcccC
Q 003270 125 LEALTLGRGQLG 136 (835)
Q Consensus 125 L~~L~l~~~~i~ 136 (835)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 445555555444
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.75 E-value=0.072 Score=58.32 Aligned_cols=171 Identities=26% Similarity=0.295 Sum_probs=98.7
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccC-CCcceEecccCCCCccchh---hhhhhcCCCccEEeccCCCCcC
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINC-PLLTSLDASFCSQLKDDCL---SATTTSCPLIESLILMSCQSIG 566 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~-~~L~~L~ls~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~~ 566 (835)
+..++.|..++++.|.+. ..|...+-..+... ..+++|++..| .+++.+. ...+.....++.++++.|....
T Consensus 111 l~t~~~L~~L~l~~n~l~---~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~ 186 (478)
T KOG4308|consen 111 LKTLPTLGQLDLSGNNLG---DEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLNGLIE 186 (478)
T ss_pred hcccccHhHhhcccCCCc---cHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhcccch
Confidence 455667777777777764 11112222223332 45666777776 3443332 2234446677777777777542
Q ss_pred ch---hhHhhh----hccccceeeecCccccC-----chHHHhcccc-ccEEecccccccchhhHHHHHh-cCCC-CCcc
Q 003270 567 PD---GLYSLR----SLQNLTMLDLSYTFLTN-----LEPVFESCLQ-LKVLKLQACKYLTNTSLESLYK-KGSL-PALQ 631 (835)
Q Consensus 567 ~~---~~~~~~----~l~~L~~L~Ls~~~~~~-----l~~~~~~~~~-L~~L~l~~~~~l~~~~~~~l~~-~~~~-~~L~ 631 (835)
.. ....+. ...++++|.+++|.++. +...+...+. +.++++.+|. +.+.+...+.. +..+ ..++
T Consensus 187 ~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~ 265 (478)
T KOG4308|consen 187 LGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLR 265 (478)
T ss_pred hhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhh
Confidence 11 012233 35677777777777763 2234555555 6667777777 66665555432 3334 5667
Q ss_pred EEeCCCcccchH---HHHHHHhhCCCccEEEccCCCCC
Q 003270 632 ELDLSYGTLCQS---AIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 632 ~L~l~~n~~~~~---~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
.++++.|.+++. .+.+.+..+.+++++.+.+|+..
T Consensus 266 ~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 266 VLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred hhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 888888877653 34566667778888888877643
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=89.37 E-value=0.26 Score=28.51 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=8.5
Q ss_pred CccceeecccCcCChhHH
Q 003270 772 PKLTSLFLQSCNIDEEGV 789 (835)
Q Consensus 772 ~~L~~L~l~~~~i~~~~l 789 (835)
++|++|+|++|.|+++++
T Consensus 2 ~~L~~L~l~~n~i~~~g~ 19 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGA 19 (24)
T ss_dssp TT-SEEE-TSSBEHHHHH
T ss_pred CCCCEEEccCCcCCHHHH
Confidence 455555555555554443
|
... |
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=87.04 E-value=0.5 Score=27.26 Aligned_cols=22 Identities=45% Similarity=0.764 Sum_probs=12.1
Q ss_pred CCCCEEeCCCCCCCChHHHHHHH
Q 003270 237 PQLESLDMSNCSCVSDESLREIA 259 (835)
Q Consensus 237 ~~L~~L~L~~~~~l~~~~~~~~~ 259 (835)
++|++|+|++|. +++.++..++
T Consensus 2 ~~L~~L~l~~n~-i~~~g~~~l~ 23 (24)
T PF13516_consen 2 PNLETLDLSNNQ-ITDEGASALA 23 (24)
T ss_dssp TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred CCCCEEEccCCc-CCHHHHHHhC
Confidence 556666666666 6666655543
|
... |
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=82.66 E-value=2.3 Score=25.70 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=15.9
Q ss_pred CCCCEEeCCCCCCCChHHHHHHHH
Q 003270 237 PQLESLDMSNCSCVSDESLREIAL 260 (835)
Q Consensus 237 ~~L~~L~L~~~~~l~~~~~~~~~~ 260 (835)
++|++|+|++|. +++.+...++.
T Consensus 2 ~~L~~LdL~~N~-i~~~G~~~L~~ 24 (28)
T smart00368 2 PSLRELDLSNNK-LGDEGARALAE 24 (28)
T ss_pred CccCEEECCCCC-CCHHHHHHHHH
Confidence 467777777777 77777666654
|
|
| >PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B | Back alignment and domain information |
|---|
Probab=82.10 E-value=0.32 Score=33.86 Aligned_cols=33 Identities=18% Similarity=0.484 Sum_probs=23.2
Q ss_pred hhhccccchhhhHHHHHHHHhhcCCCCceeecc
Q 003270 48 KIWKSGWILQMTYCIWQWRAASAHEDFWRCLNF 80 (835)
Q Consensus 48 ~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~~ 80 (835)
..+........+.|||+|+.+..+...|+++.+
T Consensus 14 ~~L~~~dl~~~~~vcr~w~~~~~~~~lW~~~~~ 46 (47)
T PF12937_consen 14 SYLDPRDLLRLSLVCRRWRRIANDNSLWRRLCL 46 (47)
T ss_dssp TTS-HHHHHHHTTSSHHHHHHHTCCCHHHHHC-
T ss_pred hcCCHHHHHHHHHHHHHHHHHHCChhhhhhhcc
Confidence 334444456678899999999887888987654
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=81.47 E-value=1.2 Score=26.27 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=14.3
Q ss_pred ccccceeeecCccccCchHH
Q 003270 576 LQNLTMLDLSYTFLTNLEPV 595 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~~ 595 (835)
+++|+.|+|++|++..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677778888777777663
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=81.47 E-value=1.2 Score=26.27 Aligned_cols=20 Identities=50% Similarity=0.584 Sum_probs=14.3
Q ss_pred ccccceeeecCccccCchHH
Q 003270 576 LQNLTMLDLSYTFLTNLEPV 595 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~~ 595 (835)
+++|+.|+|++|++..+|..
T Consensus 1 L~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCCEEECCCCcCCcCCHH
Confidence 35677778888777777663
|
|
| >smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type | Back alignment and domain information |
|---|
Probab=80.42 E-value=2 Score=25.93 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=12.4
Q ss_pred CccceeecccCcCChhHHHH
Q 003270 772 PKLTSLFLQSCNIDEEGVES 791 (835)
Q Consensus 772 ~~L~~L~l~~~~i~~~~l~~ 791 (835)
++|++|+|++|.|++++...
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~ 21 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARA 21 (28)
T ss_pred CccCEEECCCCCCCHHHHHH
Confidence 45666677766666555543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 144 bits (364), Expect = 3e-36
Identities = 85/586 (14%), Positives = 166/586 (28%), Gaps = 125/586 (21%)
Query: 64 QWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLR 123
W W V +R+P V + G P
Sbjct: 36 SWYEIER----WCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHF-----------A 80
Query: 124 NLEALTLGRGQLGDAFFHALAD-CSMLKSLNVNDATLGN-GVQEIPINHDQLRRLEITKC 181
+ + G G + A++ + L+ + + + + ++ I + + L ++ C
Sbjct: 81 DFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140
Query: 182 R------VMRVSIRCPQLEHLSLKRSN--------MAQAVLNCPLLHLLDIASCH-KLSD 226
+ ++ C L+ L L+ S+ ++ L L+I+ ++S
Sbjct: 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSF 200
Query: 227 AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPML 286
+A+ T CP L+SL ++ V E L + L L + V +
Sbjct: 201 SALERLVTRCPNLKSLKLNRA--VPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258
Query: 287 TVLQ-------LHSCEGITSASMAAI-SHSYMLEVLELDNCNLLTSVSLELPRLQNIRLV 338
L L A + A+ S L L L + + ++L L
Sbjct: 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKL-------LC 311
Query: 339 HCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEV 398
C K L + I L+ LA C+ L+E+
Sbjct: 312 QCPKLQRLWVLD-----------------YIEDAGLE-----------VLASTCKDLREL 343
Query: 399 DLTDCESLTNSVCEVFSDGG------GCPMLKSLVLDNC----EGLTVVRFCSTSLVSLS 448
+ E ++ G GCP L+S++ L + ++
Sbjct: 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFR 403
Query: 449 LVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMV 508
L F + C L L +
Sbjct: 404 LCIIEPKA------------PDYLTLEPLDIGFGAIVEH------CKDLRRLSL------ 439
Query: 509 VLELKGCGVLSDAYI-----NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ 563
G+L+D + L +F D + + C + L + C
Sbjct: 440 ------SGLLTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP 492
Query: 564 SIGPDGLYSLRSLQNLTMLDLSYTFLTN--LEPVFESCLQLKVLKL 607
L + L+ + L +S ++ + + + +L V +
Sbjct: 493 FGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVI 538
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 5e-36
Identities = 74/542 (13%), Positives = 177/542 (32%), Gaps = 84/542 (15%)
Query: 172 QLRRLEITKCR---VMRVSIRCPQLEHLSLK-------------------RSNMAQAVLN 209
R++ I C V R P++ + LK + +
Sbjct: 44 CRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSS 103
Query: 210 CPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILN 269
L + + ++D + L A S + L +S+C S + L IA +C NL+ L+
Sbjct: 104 YTWLEEIRLKRM-VVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELD 162
Query: 270 SSYCPNISLE-------SVRLPMLTVLQLHSCEG-ITSASMAAI-SHSYMLEVLELDNCN 320
+ L L + ++ +++ + + L+ L+L+
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222
Query: 321 LLT---SVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKL 377
L ++ P+L+ + ++ + + + +S C L ++ +++
Sbjct: 223 PLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA--LSGCKELRCLSGFWDAV--- 277
Query: 378 SLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC---EGL 434
L ++ C L ++L+ + + ++ CP L+ L + + GL
Sbjct: 278 ----PAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLC---QCPKLQRLWVLDYIEDAGL 330
Query: 435 TVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVA-----LQSL 489
V+ L L + ++ + V V+ L+S+
Sbjct: 331 EVLASTCKDLRELRVFPSEPFV-------------MEPNVALTEQGLVSVSMGCPKLESV 377
Query: 490 NLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTT 549
C +++ + + + ++ + C + + D A
Sbjct: 378 LYF-CRQMTNAALITI------ARNRPNMTRFRL-CIIEPKAPDYLTLEPLDIGFGAIVE 429
Query: 550 SCPLIESLILMSCQSIGPDGLYSL-RSLQNLTMLDLSYTFLTN--LEPVFESCLQLKVLK 606
C + L L + + + + ML +++ ++ + V C L+ L+
Sbjct: 430 HCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLE 487
Query: 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 666
++ C + L + L ++ L +S ++ A + L L ++ G
Sbjct: 488 IRDCPFGDKALLANA---SKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544
Query: 667 HD 668
Sbjct: 545 DS 546
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 1e-30
Identities = 91/531 (17%), Positives = 177/531 (33%), Gaps = 70/531 (13%)
Query: 314 LELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITS 371
+ + NC ++ ++ P+++++ L FAD NL + ++ +
Sbjct: 48 VFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGY---VYPWIEAMSSSY 104
Query: 372 NSLQKLSLQKQ----ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLV 427
L+++ L++ + L +A + + + L+ CE + + C LK L
Sbjct: 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAAT--CRNLKELD 162
Query: 428 LDNC-------EGLTVVRFCSTSLVSLSLVGCR------AITALELKCPILEKVCLDGCD 474
L L+ TSLVSL++ A+ L +CP L+ + L+
Sbjct: 163 LRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAV 222
Query: 475 HIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDAS 534
+E + + L P+L LG V LS A C L L S
Sbjct: 223 PLEKLATL--------LQRAPQLEELGTGGYTAEV-RPDVYSGLSVALSGCKELRCL--S 271
Query: 535 FCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTF-LTNLE 593
L A + C + +L L D + L L L + LE
Sbjct: 272 GFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLE 331
Query: 594 PVFESCLQLKVLKLQACKYLTNTSLESLYKKG------SLPALQELDLSYGTLCQSAIEE 647
+ +C L+ L++ + +L ++G P L+ + + +A+
Sbjct: 332 VLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALIT 391
Query: 648 LLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLL 707
+ ++T L +I + + L
Sbjct: 392 IARNRPNMTRFRLCIIEPKAPDYL----TLEPLDIGF-------------GAIVEHCKDL 434
Query: 708 QNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLS----ANLKEVDVACFNLCFLNLSNCC- 762
+ L+ G + VF + L+++ + + V C +L L + +C
Sbjct: 435 RRLSLSGLLTDK-VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF 493
Query: 763 ---SLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGML--ETLDVRFCP 808
+L + SL++ SC++ + + L E +D R P
Sbjct: 494 GDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-29
Identities = 85/502 (16%), Positives = 161/502 (32%), Gaps = 63/502 (12%)
Query: 379 LQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGG---GCPMLKSLVLDNCEGLT 435
+Q ++ S++L C+ E++ + C S P ++S+ L
Sbjct: 21 IQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFA 80
Query: 436 VVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVA-----LQSLN 490
A+++ LE++ L + +A + L
Sbjct: 81 DFNLVPDGWGGYVYPWIEAMSS---SYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLV 136
Query: 491 LGICPKLSTLGIEAL-----HMVVLELKGCGV-------LSDAYINCPLLTSLDASFC-S 537
L C ST G+ A+ ++ L+L+ V LS L SL+ S S
Sbjct: 137 LSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLAS 196
Query: 538 QLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY-------TFLT 590
++ L T CP ++SL L + L+ L L +
Sbjct: 197 EVSFSALERLVTRCPNLKSLKLNRAVPL-EKLATLLQRAPQLEELGTGGYTAEVRPDVYS 255
Query: 591 NLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650
L C +L+ L L ++Y L L+LSY T+ + +LL
Sbjct: 256 GLSVALSGCKELRCLSG--FWDAVPAYLPAVYSV--CSRLTTLNLSYATVQSYDLVKLLC 311
Query: 651 YCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIH------ESIDQPN 704
C L + + L AS C+ V+ S N+ S+
Sbjct: 312 QCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371
Query: 705 RLLQNLNCVGCPNIRKV-FIPPQARCFHLSSLNLSLSANLKEVDV--------------A 749
L+++ C + I +++ L + +
Sbjct: 372 PKLESVL-YFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH 430
Query: 750 CFNLCFLNLSNCCS---LETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRF 806
C +L L+LS + E + K+ L + + G+ ++ C L L++R
Sbjct: 431 CKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRD 490
Query: 807 CPKICSTSMGRLRAACPSLKRI 828
CP ++ + +++ +
Sbjct: 491 CP-FGDKALLANASKLETMRSL 511
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594 | Back alignment and structure |
|---|
Score = 53.0 bits (127), Expect = 3e-07
Identities = 21/147 (14%), Positives = 44/147 (29%), Gaps = 12/147 (8%)
Query: 133 GQLGDAFFHALAD-CSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR-----VMRV 186
+ D F A+ + C L+ L+++ + I ++ L + + V
Sbjct: 417 LEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHV 476
Query: 187 SIRCPQLEHLSLKRSN-----MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 241
C L L ++ + + L ++SC +S A +L P+L
Sbjct: 477 LSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNV 535
Query: 242 LDMSNCSCVSDESLREIALSCANLRIL 268
+ R +
Sbjct: 536 EVIDERGAPDSRPESCPVERVFIYRTV 562
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 1e-32
Identities = 78/545 (14%), Positives = 170/545 (31%), Gaps = 75/545 (13%)
Query: 63 WQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLL-------- 114
+W + + + + +R+PN + + G P +
Sbjct: 42 RRWFKIDSETREHVTMAL----CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWG 97
Query: 115 ------VMKAVSLLRNLEALTLGRGQLGDAFFHALAD--CSMLKSLNVNDATL--GNGVQ 164
V + + LR L+++ R + D LA L++L ++ + +G+
Sbjct: 98 GYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLL 157
Query: 165 EIPINHDQLRRLEITKCRV--------MRVSIRCPQLEHLSLKRSNMAQA--------VL 208
I + +++ L + + ++ LE L+ + A+
Sbjct: 158 SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217
Query: 209 NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRIL 268
NC L + + L AA + + ++ + ++ + + L L
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMN--LVFPRKLCRL 275
Query: 269 NSSYCPNISLESV--RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC---NLLT 323
SY + + + L L T I LEVLE N L
Sbjct: 276 GLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLE 335
Query: 324 SVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI----MVSNCAALHRINITSNSLQKLSL 379
++ +L+ +R+ + ++S + C L + + + + SL
Sbjct: 336 VLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESL 395
Query: 380 QKQENLTSLALQCQCLQEVDLTDCESLTNSVCE--VFSDGGGCPMLKSLVLDNC------ 431
E++ + + V L E +T+ + V S GC L+
Sbjct: 396 ---ESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452
Query: 432 EGLTVVRFCSTSLVSLSLVGCR----AITALELKCPILEKVCLDGCDHIESASFVPVALQ 487
GL+ + S ++ + L + CP L+K+ + GC F A+
Sbjct: 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGC------CFSERAIA 506
Query: 488 SLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSAT 547
+ + P L L ++ + G ++ A + + + ++
Sbjct: 507 AA-VTKLPSLRYLWVQGYR---ASMTGQDLMQMA-RPYWNIELIPSRRVPEVNQQGEIRE 561
Query: 548 TTSCP 552
Sbjct: 562 MEHPA 566
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 1e-30
Identities = 77/624 (12%), Positives = 165/624 (26%), Gaps = 126/624 (20%)
Query: 230 RLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVL 289
R E + M+ C + + L + NLR L P ++ + L
Sbjct: 43 RWFKIDSETREHVTMALCYTATPDRL---SRRFPNLRSLKLKGKPRAAMFN--------L 91
Query: 290 QLHSCEGITSASMAAISHSY-MLEVLELDNCN-----LLTSVSLELPRLQNIRLVHCRKF 343
+ G + + IS++ L+ + L L+ ++L C F
Sbjct: 92 IPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGF 151
Query: 344 ADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 403
+ L S+ C+ ++ + + +
Sbjct: 152 TT-------------------------------------DGLLSIVTHCRKIKTLLMEES 174
Query: 404 ESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCP 463
+ L+ L E + + + + + C
Sbjct: 175 SFSEKDGKWLHELAQHNTSLEVLNFYMTEF--------------AKISPKDLETIARNCR 220
Query: 464 ILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYI 523
L V + + +E F L +L+ + + Y+
Sbjct: 221 SLVSVKVGDFEILELVGF---------FKAAANLEEFCGGSLN-------EDIGMPEKYM 264
Query: 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLD 583
N L S + + + I L L+ D ++ NL +L+
Sbjct: 265 NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE 324
Query: 584 LSYTF-LTNLEPVFESCLQLKVLKLQACK----------YLTNTSLESLYKKGSLPALQE 632
LE + + C QLK L+++ ++ L +L + L+
Sbjct: 325 TRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ--GCQELEY 382
Query: 633 LDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFP 692
+ + + ++E + Y +L L + +
Sbjct: 383 MAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERI------------------TDLPL 424
Query: 693 HENIHESIDQPNRLLQNLNCVGCPNI-RKVFIPPQARCFHLSSLNLSLSAN----LKEVD 747
+ + +L + + + ++ + L L E
Sbjct: 425 DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS 484
Query: 748 VACFNLCFLNLSNCC----SLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGM--LET 801
C NL L + CC ++ P L L++Q G + +E
Sbjct: 485 RGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIEL 544
Query: 802 LDVRFCPKICSTSMGRLRAACPSL 825
+ R P++ R +
Sbjct: 545 IPSRRVPEVNQQGEIREMEHPAHI 568
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-22
Identities = 66/475 (13%), Positives = 147/475 (30%), Gaps = 59/475 (12%)
Query: 379 LQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGG---GCPMLKSLVLDNCEGLT 435
+ ++ S +L C+ ++D E +T ++C + P L+SL L
Sbjct: 28 ITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAA 87
Query: 436 VVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVA------LQSL 489
+ + I+ L+ V + +A L++L
Sbjct: 88 MFNLIPENWGGYVTPWVTEISN---NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETL 143
Query: 490 NLGICPKLSTLGIEAL-----HMVVLELKGCGVLSDAYI-------NCPLLTSLDASF-- 535
L C +T G+ ++ + L ++ + L L+
Sbjct: 144 KLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTE 203
Query: 536 CSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYS-LRSLQNLTMLDLSYTFLTNLEP 594
+++ L +C + S+ + + + G + +L+ L+ +
Sbjct: 204 FAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNE--DIGMPE 261
Query: 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH 654
+ + + + L Y+ + L+ +++LDL Y L L+ C +
Sbjct: 262 KYMNLVFPRKLCRLGLSYMGPNEMPILFP--FAAQIRKLDLLYALLETEDHCTLIQKCPN 319
Query: 655 LTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVG 714
L + L A C+ + + E+ + Q R L L G
Sbjct: 320 LEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQ--RGLIAL-AQG 376
Query: 715 CPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKL 774
C + + + +++ + L+ + NLC L ++
Sbjct: 377 CQELEYM---------AVYVSDITNES-LESIGTYLKNLCDFRLVLLDR-------EERI 419
Query: 775 TSLFLQSCNIDEEGVESAITQCGMLETLDVRF-CPKICSTSMGRLRAACPSLKRI 828
T L L + GV S + C L + + + P+++ +
Sbjct: 420 TDLPL------DNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWM 468
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592 | Back alignment and structure |
|---|
Score = 93.5 bits (232), Expect = 7e-20
Identities = 59/417 (14%), Positives = 116/417 (27%), Gaps = 36/417 (8%)
Query: 444 LVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIE 503
S SLV CR ++ + + L + S L+SL L P+ + +
Sbjct: 34 RDSASLV-CRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI 92
Query: 504 ALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ 563
+ +S+ N L S+ D +E+L L C
Sbjct: 93 PENWGGYVTPWVTEISN---NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCS 149
Query: 564 SIGPDGLYSL-RSLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQA--CKYLTN 615
DGL S+ + + L + + + L + + L+VL ++
Sbjct: 150 GFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISP 209
Query: 616 TSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASG 675
LE++ + + +L + + + + +L +
Sbjct: 210 KDLETIAR--NCRSLVSVKVGDFEILELV--GFFKAAANLEEFCGGSLNEDIGMPEKYMN 265
Query: 676 CQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSL 735
+ P+E ++ L+ + + +C +L L
Sbjct: 266 LVFPRKLCRLGLSYMGPNEMPILFPFAAQ--IRKLDLLYALLETEDHCTLIQKCPNLEVL 323
Query: 736 NLSLS---ANLKEVDVACFNLCFLNLSNCC---------------SLETLKLDCPKLTSL 777
L+ + C L L + L L C +L +
Sbjct: 324 ETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYM 383
Query: 778 FLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTT 834
+ +I E +ES T L + + + L SL L
Sbjct: 384 AVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRR 440
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 46/329 (13%), Positives = 103/329 (31%), Gaps = 65/329 (19%)
Query: 63 WQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLL 122
+W ++ E W+ L+ + + DV R + + + +
Sbjct: 37 KRWYRLASDESLWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSP 92
Query: 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 182
++ + L + + H +
Sbjct: 93 FRVQHMDLSNSVIEVSTLHGILS------------------------------------- 115
Query: 183 VMRVSIRCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQ 238
+C +L++LSL+ + + L L+++ C S+ A++ +SC +
Sbjct: 116 ------QCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSR 169
Query: 239 LESLDMSNCSCVSDESLRE-IALSCANLRILN-SSYCPNISLESV-----RLPMLTVLQL 291
L+ L++S C +++ ++ +A + LN S Y N+ + R P L L L
Sbjct: 170 LDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDL 229
Query: 292 HSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAM 351
+ + L+ L L C + +L L L + +
Sbjct: 230 SDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLL-------ELGEIPTLKTLQVFGI 282
Query: 352 MLSSIMVSNCAALHRINITSNSLQKLSLQ 380
+ + AL + I + ++
Sbjct: 283 VPDGTLQLLKEALPHLQINCSHFTTIARP 311
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 86.9 bits (215), Expect = 1e-18
Identities = 59/359 (16%), Positives = 110/359 (30%), Gaps = 81/359 (22%)
Query: 327 LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLT 386
L LP L + V C+++ L + ++ ++ + S ++ + +
Sbjct: 24 LCLPELLKVSGV-CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFM 82
Query: 387 SLAL----QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCST 442
L +Q +DL++ +++ + S C L++L L+
Sbjct: 83 DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILS---QCSKLQNLSLEGL----------- 128
Query: 443 SLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVA-----LQSLNLGICPKL 497
LS + K L ++ L GC + + L LNL C
Sbjct: 129 ---RLSDPIVNTLA----KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDF 181
Query: 498 STLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQ-LKDDCLSATTTSCPLIES 556
+ ++ +T L+ S + L+ LS CP +
Sbjct: 182 TEKHVQVA---------------VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVH 226
Query: 557 LILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNT 616
L L + D L L L LS C +
Sbjct: 227 LDLSDSVMLKNDCFQEFFQLNYLQHLSLSR-----------------------CYDIIPE 263
Query: 617 SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAY-------CTHLTHVSLNGCGNMHD 668
+L L G +P L+ L + G + ++ L C+H T ++ GN +
Sbjct: 264 TLLEL---GEIPTLKTLQVF-GIVPDGTLQLLKEALPHLQINCSHFTTIARPTIGNKKN 318
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 70.7 bits (173), Expect = 3e-13
Identities = 56/300 (18%), Positives = 104/300 (34%), Gaps = 59/300 (19%)
Query: 543 CLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN--LEPVFESCL 600
T + +S L S + +DLS + + L + C
Sbjct: 59 LHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCS 118
Query: 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY-GTLCQSAIEELLAYCTHLTHVS 659
+L+ L L+ + L++ + +L L L+LS + A++ LL+ C+ L ++
Sbjct: 119 KLQNLSLEGLR-LSDPIVNTL---AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELN 174
Query: 660 LNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIR 719
L+ C + + +++ ++ + + LN G
Sbjct: 175 LSWCFDFTE-------------------------KHVQVAVAHVSETITQLNLSGYRK-- 207
Query: 720 KVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSL--ETLKL--DCPKLT 775
NL S L + C NL L+LS+ L + + L
Sbjct: 208 ----------------NLQKSD-LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQ 250
Query: 776 SLFLQSC-NIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSLKRIFSSLTT 834
L L C +I E + + + L+TL V + ++ L+ A P L+ S TT
Sbjct: 251 HLSLSRCYDIIPETLL-ELGEIPTLKTLQVFGI--VPDGTLQLLKEALPHLQINCSHFTT 307
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 64.5 bits (157), Expect = 4e-11
Identities = 48/333 (14%), Positives = 99/333 (29%), Gaps = 78/333 (23%)
Query: 473 CDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD----AYINCPLL 528
C + Q+L+L + L V+ + D + + +
Sbjct: 36 CKRWYRLASDESLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRV 95
Query: 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY-T 587
+D S ++ L + C +++L L + + +L NL L+LS +
Sbjct: 96 QHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCS 153
Query: 588 FLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLS--YGTLCQS 643
+ L+ + SC +L L L C T ++ S + +L+LS L +S
Sbjct: 154 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS-ETITQLNLSGYRKNLQKS 212
Query: 644 AIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQP 703
+ L+ C +L H+ L+
Sbjct: 213 DLSTLVRRCPNLVHLDLSD----------------------------------------- 231
Query: 704 NRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVA----CFNLCFLNLS 759
++ + +L L+LS ++ + L L +
Sbjct: 232 -----------SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 280
Query: 760 NCCS----------LETLKLDCPKLTSLFLQSC 782
L L+++C T++ +
Sbjct: 281 GIVPDGTLQLLKEALPHLQINCSHFTTIARPTI 313
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336 | Back alignment and structure |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 23/128 (17%), Positives = 45/128 (35%), Gaps = 5/128 (3%)
Query: 705 RLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCC-- 762
L Q L+ G V ++ S + F + ++LSN
Sbjct: 47 SLWQTLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIE 106
Query: 763 --SLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRA 820
+L + C KL +L L+ + + V + + L L++ C ++ L +
Sbjct: 107 VSTLHGILSQCSKLQNLSLEGLRLSDPIVN-TLAKNSNLVRLNLSGCSGFSEFALQTLLS 165
Query: 821 ACPSLKRI 828
+C L +
Sbjct: 166 SCSRLDEL 173
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 2e-19
Identities = 65/402 (16%), Positives = 124/402 (30%), Gaps = 70/402 (17%)
Query: 263 ANLRILNSSYCPNISLESV---RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319
N ++ + +++ +L LT L H+ IT + I L L +
Sbjct: 18 DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNS-SITDMT--GIEKLTGLTKLICTS- 73
Query: 320 NLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS 378
N +T++ L + L + + L+++ V+ L +N +N L KL
Sbjct: 74 NNITTLDLSQNTNLTYLACDSNK-----------LTNLDVTPLTKLTYLNCDTNKLTKLD 122
Query: 379 LQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 438
+ + LT L L E+D++ LT C + L + LT +
Sbjct: 123 VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDC------HLNKKITKLDVTPQTQLTTLD 176
Query: 439 FCSTSLVSLSLVGCRAITALEL-----------KCPILEKVCLDGCDHIESASFVPVALQ 487
+ L + + + L + L + L
Sbjct: 177 CSFNKITELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSN-----------KLT 225
Query: 488 SLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSAT 547
+++ +L+ + L++ L+ + L +D + +QL
Sbjct: 226 EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGC 285
Query: 548 T-------TSCPLIESLILMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFES 598
T + L + + L L L L+ T LT L+
Sbjct: 286 RKIKELDVTHNTQLYLLDCQAAGITEL------DLSQNPKLVYLYLNNTELTELD--VSH 337
Query: 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 640
+LK L N ++ G +PAL + G
Sbjct: 338 NTKLKSL------SCVNAHIQDFSSVGKIPALNNNFEAEGQT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-13
Identities = 74/457 (16%), Positives = 141/457 (30%), Gaps = 77/457 (16%)
Query: 189 RCPQLEHLSLKRSNMAQ--AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSN 246
+ L L S++ + L L + + ++ L + L L +
Sbjct: 40 QLATLTSLDCHNSSITDMTGIEKLTGLTKLIC-TSNNITT----LDLSQNTNLTYLACDS 94
Query: 247 CSCVSDESLREIALS-CANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAI 305
L + ++ L LN L+ + P+LT L +T +
Sbjct: 95 NK------LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNT-LTEID---V 144
Query: 306 SHSYMLEVLELDNCNLLTSVSLE-LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAAL 364
SH+ L L+ +T + + +L + + ++ + VS L
Sbjct: 145 SHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK-----------ITELDVSQNKLL 193
Query: 365 HRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLK 424
+R+N +N++ KL L + LT L L E+D+T LT C P L
Sbjct: 194 NRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCS------VNP-LT 246
Query: 425 SLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-KCPILEKVCLDGCDHIESASFVP 483
L + LT + T L+ + L + + C ++++ + +
Sbjct: 247 ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA 306
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC 543
+ L+L PKL L Y+N LT LD S ++LK
Sbjct: 307 AGITELDLSQNPKLVYL---------------------YLNNTELTELDVSHNTKLK--- 342
Query: 544 LSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLK 603
SL ++ S+ + L + + + L
Sbjct: 343 ------------SLSCVNAHI---QDFSSVGKIPALNNNFEAEGQTITMPKETLTNNSLT 387
Query: 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 640
+ + G + +++ L
Sbjct: 388 IAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENL 424
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 1e-12
Identities = 70/440 (15%), Positives = 129/440 (29%), Gaps = 109/440 (24%)
Query: 341 RKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS-LQKQENLTSLALQCQCLQEVD 399
+I A L ++ ++S+ ++ ++K LT L + +D
Sbjct: 21 ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITTLD 80
Query: 400 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE 459
L+ +LT C+ L +L + LT + + L L + +T L
Sbjct: 81 LSQNTNLTYLACDSNK-------LTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLN 133
Query: 460 LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS 519
L ++ + L L+ + K++ L +
Sbjct: 134 CARNTLTEIDVSHN----------TQLTELDCHLNKKITKLDVT---------------- 167
Query: 520 DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ--SIGPDGLYSLRSLQ 577
LT+LD SF ++ + +S L+ L + + L
Sbjct: 168 ----PQTQLTTLDCSFN-KITELDVS----QNKLLNRLNCDTNNITKL------DLNQNI 212
Query: 578 NLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY 637
LT LD S LT ++ QL + L L +L L L
Sbjct: 213 QLTFLDCSSNKLTEID--VTPLTQLTYF------DCSVNPLTEL-DVSTLSKLTTLHCIQ 263
Query: 638 GTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIH 697
T L + L + A GC+ + V +
Sbjct: 264 ---------------TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTH----------- 295
Query: 698 ESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLN 757
N L L+C ++ L+LS + L + + L L+
Sbjct: 296 ------NTQLYLLDCQAA---------------GITELDLSQNPKLVYLYLNNTELTELD 334
Query: 758 LSNCCSLETLKLDCPKLTSL 777
+S+ L++L +
Sbjct: 335 VSHNTKLKSLSCVNAHIQDF 354
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 60.1 bits (146), Expect = 2e-09
Identities = 46/304 (15%), Positives = 83/304 (27%), Gaps = 69/304 (22%)
Query: 486 LQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLS 545
+ +L+L L+ L ++ + L++ L+ + LT LD S L +
Sbjct: 76 ITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCA 135
Query: 546 A------TTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESC 599
+ + L + I + LT LD S+ +T L+
Sbjct: 136 RNTLTEIDVSHNTQLTELDCHLNKKITKL---DVTPQTQLTTLDCSFNKITELD--VSQN 190
Query: 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVS 659
L L +T L L LD S LT +
Sbjct: 191 KLLNRLNCDTNN-ITKLDL------NQNIQLTFLDCSS---------------NKLTEID 228
Query: 660 LNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIR 719
+ + + N + E L L+C+
Sbjct: 229 VTPLTQLTYFDCS------------VN--------PLTELDVSTLSKLTTLHCIQT---- 264
Query: 720 KVFIPPQARCFHLSSLNLSLSANLKEVDVA-CFNLCFLNLSNCCSLETLKLDCPKLTSLF 778
L ++L+ + L C + L++++ L L +T L
Sbjct: 265 -----------DLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313
Query: 779 LQSC 782
L
Sbjct: 314 LSQN 317
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 57.4 bits (139), Expect = 1e-08
Identities = 49/300 (16%), Positives = 90/300 (30%), Gaps = 60/300 (20%)
Query: 555 ESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLT 614
S + + + S L LT LD + +T++ E L L + +T
Sbjct: 21 ASEVAAAF-EMQATDTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTSNN-IT 77
Query: 615 ------NTSLESLY---------KKGSLPALQELDLSYGTLCQ------SAIEELLAYCT 653
NT+L L L L L+ L + + L
Sbjct: 78 TLDLSQNTNLTYLACDSNKLTNLDVTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARN 137
Query: 654 HLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFP---HENIHESID-QPNRLLQN 709
LT + ++ + +L+ + V + N +D N+LL
Sbjct: 138 TLTEIDVSHNTQLTELD--CHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNR 195
Query: 710 LNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKL 769
LNC +++ L+L+ + L +D + L ++++ L
Sbjct: 196 LNCDTN---------------NITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDC 240
Query: 770 D-----------CPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRL 818
KLT+L ++ +E +T L C KI +
Sbjct: 241 SVNPLTELDVSTLSKLTTLHCIQTDL----LEIDLTHNTQLIYFQAEGCRKIKELDVTHN 296
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 5e-08
Identities = 52/313 (16%), Positives = 99/313 (31%), Gaps = 64/313 (20%)
Query: 119 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH-DQLRRLE 177
+S NL L +L + + + L LN + N + ++ ++ L L
Sbjct: 81 LSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCD----TNKLTKLDVSQNPLLTYLN 133
Query: 178 ITKCRVMRVSIR-CPQLEHLSLKRSNM--AQAVLNCPLLHLLDIASCHKLSDAAIRLAAT 234
+ + + + QL L + V L LD + K+++ L +
Sbjct: 134 CARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFN-KITE----LDVS 188
Query: 235 SCPQLESLDMSNCS---------------CVSDESLREIALS-CANLRILNSSYCPNISL 278
L L+ + S L EI ++ L + S P L
Sbjct: 189 QNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQLTYFDCSVNPLTEL 248
Query: 279 ESVRLPMLTVLQLH------------------SCEGITSASMAAISHSYMLEVLELDNCN 320
+ L LT L EG ++H+ L +L+
Sbjct: 249 DVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQA-A 307
Query: 321 LLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS- 378
+T + L + P+L + L + L+ + VS+ L ++ + +Q S
Sbjct: 308 GITELDLSQNPKLVYLYLNNTE-----------LTELDVSHNTKLKSLSCVNAHIQDFSS 356
Query: 379 LQKQENLTSLALQ 391
+ K L +
Sbjct: 357 VGKIPALNNNFEA 369
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 2e-15
Identities = 88/486 (18%), Positives = 170/486 (34%), Gaps = 63/486 (12%)
Query: 209 NCPLLHLLDIASCH--KLSDAAIRLAATSCPQLESLDMSNC--SCVSDESLREIALSCAN 264
L LD+ C + + + S +L++L ++ +++ +L
Sbjct: 55 RLINLTFLDLTRCQIYWIHEDTFQ----SQHRLDTLVLTANPLIFMAETALS----GPKA 106
Query: 265 LRILNSSYCPNISLESV---RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 321
L+ L S++ + L L L S I+S + + L+VL+ N +
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSN-HISSIKLPKGFPTEKLKVLDFQNNAI 165
Query: 322 LTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIM--VSNCAALHRINITSNSLQKLSL 379
++ LQ + LNL ++ I + A +N +
Sbjct: 166 HYLSKEDMSSLQQATNL------SLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 380 QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 439
+ +N T +L +++D D +G ++S+ L +
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAV-------FEGLCEMSVESINLQKHYFFNISSN 272
Query: 440 ---CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGC--DHIESASFVP-VALQSLN 490
C + L L L ++ L + L+K+ L +++ S +L L+
Sbjct: 273 TFHCFSGLQELDLTATH-LSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 491 LGICPKLSTLGIEAL----HMVVLEL-----KGCGVLSDAYINCPLLTSLDASFC--SQL 539
+ K LG L ++ L+L + + N L SL+ S+ L
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 540 KDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFES 598
K + CP +E L L + D ++L L +L+LS++ L +F+
Sbjct: 392 KTEAFK----ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDG 447
Query: 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ--SAIEELLAYCTHLT 656
L+ L LQ +++ +L L+ L LS+ C S + +
Sbjct: 448 LPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSF---CDLSSIDQHAFTSLKMMN 503
Query: 657 HVSLNG 662
HV L+
Sbjct: 504 HVDLSH 509
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 73.5 bits (181), Expect = 1e-13
Identities = 76/452 (16%), Positives = 140/452 (30%), Gaps = 71/452 (15%)
Query: 253 ESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLE 312
S + S L + ++ + RL LT L L C+ I + L+
Sbjct: 33 NSTECLEFSFNVLPTIQNT-----TFS--RLINLTFLDLTRCQ-IYWIHEDTFQSQHRLD 84
Query: 313 VLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRIN 368
L L N L ++ L+++ + + + I + N L +
Sbjct: 85 TLVLTA-NPLIFMAETALSGPKALKHLFFIQT------GIS--SIDFIPLHNQKTLESLY 135
Query: 369 ITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 428
+ SN + + L K L + +D + ++ E S +L L
Sbjct: 136 LGSNHISSIKLPKGFPTEKL-------KVLDFQNN-AIHYLSKEDMS---SLQQATNLSL 184
Query: 429 D----NCEGLTVVRFCSTSLVSLSLVGCRAITAL-----ELKCPILEKVCLDGCD--HIE 477
+ + G+ F S SL+ G + + + L + D I
Sbjct: 185 NLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDIS 244
Query: 478 SASFVPVA---LQSLNLGICPKLSTLGIEAL----HMVVLELKGC--GVLSDAYINCPLL 528
A F + ++S+NL + + L+L L + L
Sbjct: 245 PAVFEGLCEMSVESINLQKH-YFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL 303
Query: 529 TSLDASFC--SQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY 586
L S L S + P + L + G L +L+NL LDLS+
Sbjct: 304 KKLVLSANKFENLCQISAS----NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSH 359
Query: 587 TFLTNLEP---VFESCLQLKVLKLQACKYLTNTSLESLYKK--GSLPALQELDLSYGTLC 641
+ + + L+ L L+ SL + P L+ LDL++ L
Sbjct: 360 DDIETSDCCNLQLRNLSHLQSL------NLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413
Query: 642 QSAIEELLAYCTHLTHVSLNGCGNMHDLNWGA 673
+ L ++L+ + +
Sbjct: 414 VKDAQSPFQNLHLLKVLNLSHS-LLDISSEQL 444
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 78/539 (14%), Positives = 160/539 (29%), Gaps = 111/539 (20%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI----NHDQLRRLE 177
+ L+ L + + F L + L+SL + N + I + ++L+ L+
Sbjct: 104 PKALKHLFFIQTGISSIDFIPLHNQKTLESLYLG----SNHISSIKLPKGFPTEKLKVLD 159
Query: 178 ITKCRVMRVS----IRCPQLEHLSLKRSN-----MAQAVLNCPLLHLLDIASCHKLSDAA 228
+ +S Q +LSL + + + + L+ L
Sbjct: 160 FQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIF 219
Query: 229 IRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPM 285
L ++ L + L ++ +N ++ S
Sbjct: 220 KGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSG 279
Query: 286 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL--LTSVSLE-LPRLQNIRLVHCRK 342
L L L + ++ + + L+ L L L +S P L ++ +
Sbjct: 280 LQELDLTATH-LSELP-SGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG--- 334
Query: 343 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQE--NLTSLALQCQCLQEVDL 400
N + + L + + N L ++++ + ++ + NL+ LQ ++L
Sbjct: 335 ----NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH-------LQSLNL 383
Query: 401 TDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL 460
+ + E F CP L+ L L + +
Sbjct: 384 SYN-EPLSLKTEAFK---ECPQLELLDLAFTR----------------------LKVKD- 416
Query: 461 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD 520
+S L+ LNL L +
Sbjct: 417 ---------------AQSPFQNLHLLKVLNLSHS-LLDISSEQLFD-------------- 446
Query: 521 AYINCPLLTSLDASFCS-QLKDDCLSATTTSCPLIESLILMSCQ--SIGPDGLYSLRSLQ 577
P L L+ + + + + +E L+L C SI + SL+
Sbjct: 447 ---GLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQH---AFTSLK 500
Query: 578 NLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLS 636
+ +DLS+ LT+ S L+ L L + ++ L L + ++L
Sbjct: 501 MMNHVDLSHNRLTSSSIEALSHLKGIYLNLASNH-ISIILPSLL---PILSQQRTINLR 555
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 75.4 bits (186), Expect = 2e-14
Identities = 92/491 (18%), Positives = 166/491 (33%), Gaps = 96/491 (19%)
Query: 213 LHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIA---LSCANLRILN 269
+ LDI C +LSDA Q + + + +C +++ ++I+ L LN
Sbjct: 5 IQSLDI-QCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELN 62
Query: 270 SSYCPNISLESVRL---------PMLTVLQLHSCEGITSASMAAIS----HSYMLEVLEL 316
+ V + L L +C +T A +S L+ L L
Sbjct: 63 LRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHL 120
Query: 317 DNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQK 376
+ L + L + + CR L + + C ++++ S +
Sbjct: 121 SDNLLGDAGLQLL--CEGLLDPQCR-----------LEKLQLEYC------SLSAASCEP 161
Query: 377 LS--LQKQENLTSLALQCQCLQEVDLTD-CESLTNSVCEVFSDGGGCPMLKSLVLDNCEG 433
L+ L+ + + L + + E + C+ L +S C L++L L++C
Sbjct: 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPC----------QLEALKLESC-- 209
Query: 434 LTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGI 493
++ CR + + L ++ L + L L
Sbjct: 210 ------------GVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGM--AELCPGLLHP 254
Query: 494 CPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSA-----TT 548
+L TL + + KGCG L L L + +L D+
Sbjct: 255 SSRLRTLW---IWECGITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLE 310
Query: 549 TSCPLIESLILMSCQSIGPDGLYS----LRSLQNLTMLDLSYTFLTN------LEPVFES 598
C L ESL + SC L + L L +S L + + + +
Sbjct: 311 PGCQL-ESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQP 368
Query: 599 CLQLKVLKLQACKYLTNTSLESLYKK-GSLPALQELDLSYGTLCQSAIEELLA----YCT 653
L+VL L C ++++S SL + +L+ELDLS L + I +L+
Sbjct: 369 GSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 427
Query: 654 HLTHVSLNGCG 664
L + L
Sbjct: 428 LLEQLVLYDIY 438
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 4e-13
Identities = 90/492 (18%), Positives = 150/492 (30%), Gaps = 118/492 (23%)
Query: 371 SNSLQKLSLQKQ----ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG-GGCPMLKS 425
S +Q L +Q + L Q Q V L DC LT + C+ S P L
Sbjct: 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAE 60
Query: 426 LVLDN-----------CEGLTVVRFCSTSLVSLSL-------VGCRAITALELKCPILEK 467
L L + +GL + S + LSL GC +++ P L++
Sbjct: 61 LNLRSNELGDVGVHCVLQGL---QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117
Query: 468 VCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPL 527
+ L + A L L +L L L L C L+ P
Sbjct: 118 LHLSDN-LLGDAGLQ--LLCEGLLDPQCRLEKLQ---LEYCSLSAASCEPLASVLRAKPD 171
Query: 528 LTSLDASFCSQLKDD-----CLSATTTSCPLIESLILMSCQSIGPDGLYS----LRSLQN 578
L S + + + C + C L E+L L SC + D + S +
Sbjct: 172 FKELTVS-NNDINEAGVRVLCQGLKDSPCQL-EALKLESCG-VTSDNCRDLCGIVASKAS 228
Query: 579 LTMLDLSYTFLTN------LEPVFESCLQLKVLKLQ-------ACKYLT-----NTSLES 620
L L L L + + +L+ L + C L SL+
Sbjct: 229 LRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288
Query: 621 LY-----------------KKGSLPALQELDLSY---GTLCQSAIEELLAYCTHLTHVSL 660
L L+ L + C S +LA L + +
Sbjct: 289 LSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQI 348
Query: 661 NGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRK 720
+ +G + + + + QP +L+ L C
Sbjct: 349 SNN------RLEDAGVRE-----------------LCQGLGQPGSVLRVLWLADC----- 380
Query: 721 VFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSL-ETLKLDCPKLTSLFL 779
+ + C L++ L + +L+E+D+ + L + L E+++ L L L
Sbjct: 381 -DVSDSS-CSSLAAT-LLANHSLRELDL---SNNCLGDAGILQLVESVRQPGCLLEQLVL 434
Query: 780 QSCNIDEEGVES 791
EE +
Sbjct: 435 YDIYWSEEMEDR 446
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 4e-10
Identities = 82/572 (14%), Positives = 176/572 (30%), Gaps = 148/572 (25%)
Query: 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 182
++++L + +L DA + L +L+ Q + + + C
Sbjct: 3 LDIQSLDIQCEELSDARWAEL--LPLLQ---------------------QCQVVRLDDCG 39
Query: 183 VMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAA----TSCPQ 238
+ + +++ A+ P L L++ ++L D + T +
Sbjct: 40 LTEARCK------------DISSALRVNPALAELNL-RSNELGDVGVHCVLQGLQTPSCK 86
Query: 239 LESLDMSNCSCVSDESLREIA---LSCANLRILNSSYCPNISLESVRL---------PML 286
++ L + NC ++ ++ + L+ L+ S + ++L L
Sbjct: 87 IQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRL 144
Query: 287 TVLQLHSCEGITSASMAAIS----HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRK 342
LQL C +++AS ++ + L + N ++ +
Sbjct: 145 EKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNNDINEAG----------------- 186
Query: 343 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 402
+L + + L + + S + + + +L + L+E+ L
Sbjct: 187 -------VRVLCQGLKDSPCQLEALKLESCGVTSDNCR---DLCGIVASKASLRELALGS 236
Query: 403 CESLTNSVCEVFSDGGGCPM--LKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL 460
+ L + G P L++L + C ++ GC + +
Sbjct: 237 NK-LGDVGMAELCPGLLHPSSRLRTLWIWEC--------------GITAKGCGDLCRVLR 281
Query: 461 KCPILEKVCLDGCD-HIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS 519
L+++ L G + E A + L +L +L + C S
Sbjct: 282 AKESLKELSLAGNELGDEGARLLCETLLEPG----CQLESLW---VKSCSFTAACCSHFS 334
Query: 520 DAYINCPLLTSLDASFCSQLKDDCLS----ATTTSCPLIESLILMSCQSIGPDGLYS--- 572
L L S +L+D + ++ L L C + S
Sbjct: 335 SVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAA 392
Query: 573 -LRSLQNLTMLDLSYTFLTNLEPVFESCLQL-KVLKLQACKYLTNTSLESLYKKGSLPAL 630
L + +L LDLS L + LQL + ++ C L
Sbjct: 393 TLLANHSLRELDLSNNCLGD-----AGILQLVESVRQPGCL------------------L 429
Query: 631 QELDLSY---GTLCQSAIEELLAYCTHLTHVS 659
++L L + ++ L L +S
Sbjct: 430 EQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 461
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 2e-08
Identities = 81/502 (16%), Positives = 163/502 (32%), Gaps = 93/502 (18%)
Query: 76 RCLNFENRKISVEQFEDVCQRYPNATEVNIY----GAPAIHLLVMKAVSLLRNLEALTLG 131
+ L+ + ++S ++ ++ V + + A+ + L L L
Sbjct: 6 QSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDIS-SALRVNPALAELNLR 64
Query: 132 RGQLGDAFFHALADC-----SMLKSLNVNDATLGN-GVQEIPINHDQLRRLEITKCRVMR 185
+LGD H + ++ L++ + L G + +R
Sbjct: 65 SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVL--------------SSTLR 110
Query: 186 VSIRCPQLEHLSLKRSN--------MAQAVL-NCPLLHLLDIASCHKLSDAAIRLAA--T 234
P L+ L L + + + +L L L + C + + LA+
Sbjct: 111 T---LPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLR 167
Query: 235 SCPQLESLDMSNCSCVSDESLREIAL----SCANLRILNSSYCPNISLESVR-------- 282
+ P + L +SN +++ +R + S L L C ++ ++ R
Sbjct: 168 AKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVAS 225
Query: 283 LPMLTVLQLHSC----EGITSASMAAISHSYMLEVLELDNCNL-------LTSVSLELPR 331
L L L S G+ + S L L + C + L V
Sbjct: 226 KASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKES 285
Query: 332 LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQ 391
L+ + L + D R L ++ L + + S S + +S+ Q
Sbjct: 286 LKELSLAGN-ELGDEGARL--LCETLLEPGCQLESLWVKSCSFTAACCS---HFSSVLAQ 339
Query: 392 CQCLQEVDLTDCESLTNSVCEVFSDGGGCP--MLKSLVLDNCEGLTVVRFCSTSLVSLSL 449
+ L E+ +++ L ++ G G P +L+ L L +C +S
Sbjct: 340 NRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADC--------------DVSD 384
Query: 450 VGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVV 509
C ++ A L L ++ L + A + + +S+ C L L L+ +
Sbjct: 385 SSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLV-ESVRQPGC-LLEQLV---LYDIY 438
Query: 510 LELKGCGVLSDAYINCPLLTSL 531
+ L + P L +
Sbjct: 439 WSEEMEDRLQALEKDKPSLRVI 460
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-08
Identities = 78/370 (21%), Positives = 130/370 (35%), Gaps = 73/370 (19%)
Query: 486 LQSLNLGICPKLSTLGIEALHMVVLELK------------GCGVLSDAYINCPLLTSLDA 533
+QSL++ +LS L ++ + + C +S A P L L+
Sbjct: 5 IQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63
Query: 534 SFCSQLKDDCLSA-----TTTSCPLIESLILMSCQSIGPDGLYS----LRSLQNLTMLDL 584
++L D + T SC + + L L +C + G LR+L L L L
Sbjct: 64 R-SNELGDVGVHCVLQGLQTPSCKI-QKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHL 120
Query: 585 SYTFLTN------LEPVFESCLQLKVLKLQACKYLTNTSLESLYKK-GSLPALQELDLSY 637
S L + E + + +L+ L+L+ C L+ S E L + P +EL +S
Sbjct: 121 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDFKELTVSN 179
Query: 638 GTLCQSAIEEL---LAYCT-HLTHVSLNGCGNMHDLNWGASGCQPF-----ESPSV---- 684
+ ++ + L L L + L CG + C+ S+
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCG------VTSDNCRDLCGIVASKASLRELA 233
Query: 685 --YNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSAN 742
N G + + P+ L+ L C I C L + L +
Sbjct: 234 LGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GIT------AKGCGDLCRV-LRAKES 285
Query: 743 LKEVDVACFNL---CFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVE---SAITQC 796
LKE+ +A L L ETL +L SL+++SC+ S + Q
Sbjct: 286 LKELSLAGNELGDEGARLLC-----ETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN 340
Query: 797 GMLETLDVRF 806
L L +
Sbjct: 341 RFLLELQISN 350
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 76.2 bits (188), Expect = 2e-14
Identities = 101/571 (17%), Positives = 181/571 (31%), Gaps = 79/571 (13%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP----INHDQLRRLE 177
L L+ L L +L A C+ L L++ N +Q+I + L L+
Sbjct: 72 LPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLM----SNSIQKIKNNPFVKQKNLITLD 127
Query: 178 ITKCRVMRVSIR----CPQLEHLSLKR------SNMAQAVLNCPLLHLLDIASCH--KLS 225
++ + + L+ L L + + L L+++S + S
Sbjct: 128 LSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFS 187
Query: 226 DAAIRLAATSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYC-----PNISL 278
+ +L L ++N E L + L+ ++R L+ S N +
Sbjct: 188 PGCFH----AIGRLFGLFLNNVQLGPSLTEKLC-LELANTSIRNLSLSNSQLSTTSNTTF 242
Query: 279 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIR-L 337
++ LT+L L + + + LE L+ N+ S L L N+R L
Sbjct: 243 LGLKWTNLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301
Query: 338 VHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQC 394
R F ++ L I L +N+ N + + L +L
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINL------ 355
Query: 395 LQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRFCS-TSLVSLSLVG 451
+ + L++ + ++ L L L + F L L L
Sbjct: 356 -KYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGL 414
Query: 452 CR---AITALELK-CPILEKVCLDGC--DHIESASFVPV-ALQSLNLGICPKLSTLGIEA 504
+T E + + ++ L + SF V +LQ L L L +
Sbjct: 415 NEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSP 473
Query: 505 L------HMVVLELKGC---GVLSDAYINCPLLTSLDAS------FCSQLKDDCLSATTT 549
++ +L+L + D L LD
Sbjct: 474 SPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLK 533
Query: 550 SCPLIESLILMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLK 606
+ L L S I + + L L ++DL L L VF + + LK L
Sbjct: 534 GLSHLHILNLESNGFDEIPVE---VFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590
Query: 607 LQACKYLTNTSLESLYKKGSLPALQELDLSY 637
LQ +T+ + + L ELD+ +
Sbjct: 591 LQKNL-ITSVEKKVF--GPAFRNLTELDMRF 618
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 75.8 bits (187), Expect = 3e-14
Identities = 86/473 (18%), Positives = 155/473 (32%), Gaps = 75/473 (15%)
Query: 236 CPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQ 290
QL SLD+ S + E + L++LN + L LT L
Sbjct: 48 YSQLTSLDVGFNTISKLEPELCQ----KLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103
Query: 291 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADL 346
L S I L L+L + N L+S L L LQ + L +
Sbjct: 104 LMSNS-IQKIKNNPFVKQKNLITLDLSH-NGLSSTKLGTQVQLENLQELLLSNN------ 155
Query: 347 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESL 406
++A+ + + ++L ++ ++SN +++ S + L + L + L
Sbjct: 156 KIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR-------LFGLFLNNV-QL 207
Query: 407 TNSVCEVFSDGGGCPMLKSLVLDNC-----EGLTVVRFCSTSLVSLSLVGCRAITALEL- 460
S+ E +++L L N T + T+L L L + +
Sbjct: 208 GPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN-LNVVGND 266
Query: 461 ---KCPILEKVCLDGCD--HIESASFVP-VALQSLNLGICPKLSTLGIEALHMV------ 508
P LE L+ + H+ S S ++ LNL ++ + +L +
Sbjct: 267 SFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQ 326
Query: 509 ------VLELKGC---GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPL--IESL 557
L ++ G+ S+ + L L S + T S + L
Sbjct: 327 WLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHIL 386
Query: 558 ILMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYL 613
L + I D + L +L +LDL + + + + YL
Sbjct: 387 NLTKNKISKIESD---AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI------YL 437
Query: 614 TNTSLESLYKK--GSLPALQELDLSYGTLCQ-SAIEELLAYCTHLTHVSLNGC 663
+ L + +P+LQ L L L + +LT + L+
Sbjct: 438 SYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNN 490
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 64.6 bits (158), Expect = 9e-11
Identities = 101/641 (15%), Positives = 191/641 (29%), Gaps = 124/641 (19%)
Query: 238 QLESLDMSNC--SCVSDE---SLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLH 292
E D S+ + V D+ ++ + L+ LR L ++ + R LT L +
Sbjct: 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAA-----NFT--RYSQLTSLDVG 57
Query: 293 SCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMM 352
I+ ML+VL L + L N+ L+L +
Sbjct: 58 FNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTE--------LHLMSNS 108
Query: 353 LSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 409
+ I L ++++ N L L Q L + LQE+ L++ +
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLEN-------LQELLLSNN-KIQAL 160
Query: 410 VCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELK-CPILEKV 468
E LK L L + + + L L + +
Sbjct: 161 KSEELD-IFANSSLKKLELSSN------QI--KEFSPGCFHAIGRLFGLFLNNVQLGPSL 211
Query: 469 CLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC---GVLSDAYINC 525
C + + S ++L + L + LG++ ++ +L+L V +D++
Sbjct: 212 TEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271
Query: 526 PLLTSLDASFC--SQLKDDCLSATTTSCPLIESLIL--------MSCQSIGPDGLYSLRS 575
P L + L L + L L +S S+ +S +
Sbjct: 272 PQLEYFFLEYNNIQHLFSHSLH----GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW 327
Query: 576 LQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQ------------ACKYLTNTSLESLY 622
L+ L L++ + ++ +F + LK L L L ++ L L
Sbjct: 328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILN 387
Query: 623 ------------KKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLN 670
L L+ LDL + Q + ++ + L+ L
Sbjct: 388 LTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN-KYLQLT 446
Query: 671 WGA-SGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFI------ 723
+ + + + +++D Q L N+ + +
Sbjct: 447 RNSFALVPSLQRLMLRR--------VALKNVDSSPSPFQPL-----RNLTILDLSNNNIA 493
Query: 724 -PPQARCFHLSSL-NLSLSAN-LKEVDV-ACFNLCFLNLSNCCSLETLKL---------- 769
L L L L N L + A L L L L
Sbjct: 494 NINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPV 553
Query: 770 ----DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRF 806
D +L + L N++ S L++L+++
Sbjct: 554 EVFKDLFELKIIDLGLNNLNTL-PASVFNNQVSLKSLNLQK 593
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 75.1 bits (185), Expect = 5e-14
Identities = 96/582 (16%), Positives = 183/582 (31%), Gaps = 99/582 (17%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 181
L+ L L R ++ A L +L + GN +Q L
Sbjct: 55 FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT----GNPIQSFS--PGSFSGL----- 103
Query: 182 RVMRVSIRCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP 237
LE+L + + + + L L++A + + ++
Sbjct: 104 ---------TSLENLVAVETKLASLESFPIGQLITLKKLNVAHNF-IHSCKLPAYFSNLT 153
Query: 238 QLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHS 293
L +D+S ++ L+ + + L+ S P I ++ + L L L
Sbjct: 154 NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRG 213
Query: 294 CEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPR---LQNIRLVHCRKFADLNLRA 350
++ + + L V L +LE+ ++ + V +F
Sbjct: 214 NFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTND 273
Query: 351 MMLSSIMVSNCAALHRINITSNSLQKL-SLQKQENLTSLALQCQCLQEVDLTDCESLTNS 409
+ A + +++ S++ L + K SL++ L++
Sbjct: 274 FSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQFP---------- 323
Query: 410 VCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS-TSLVSLSLVGCRAITALE------LKC 462
P LKSL L +G + + SL L L ++ L
Sbjct: 324 -------TLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDLSRNA-LSFSGCCSYSDLGT 375
Query: 463 PILEKVCLDGCD-HIESASFVP-VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD 520
L + L I SA+F+ LQ L+ L +
Sbjct: 376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHS-TLKRVT----------------EFS 418
Query: 521 AYINCPLLTSLDASFC--SQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQN 578
A+++ L LD S+ D + +L + + N
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFL----GLTSLNTLKMAGNSFKDNTLSNVFANTTN 474
Query: 579 LTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKK--GSLPALQELDL 635
LT LDLS L + VF++ +L++L +++ +L L L +L LD
Sbjct: 475 LTFLDLSKCQLEQISWGVFDTLHRLQLL------NMSHNNLLFLDSSHYNQLYSLSTLDC 528
Query: 636 SYGTLCQSAIEELLAYCTHLTHVSLNG------CGNMHDLNW 671
S+ + +++ L + L +L C + L W
Sbjct: 529 SFNRI-ETSKGILQHFPKSLAFFNLTNNSVACICEHQKFLQW 569
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 85/470 (18%), Positives = 155/470 (32%), Gaps = 60/470 (12%)
Query: 234 TSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTV 288
++ +L+ LD+S C + D++ +L L + P S L L
Sbjct: 53 SNFSELQWLDLSRCEIETIEDKAWH----GLHHLSNLILTGNPIQSFSPGSFSGLTSLEN 108
Query: 289 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-----LPRLQNIRLVHCRKF 343
L + S I L+ L + + N + S L L L +
Sbjct: 109 LVAVET-KLASLESFPIGQLITLKKLNVAH-NFIHSCKLPAYFSNLTNLVH--------- 157
Query: 344 ADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 403
++L + +I V++ L + SL +SL + + A Q L E+ L
Sbjct: 158 --VDLSYNYIQTITVNDLQFLRENPQVNLSL-DMSLNPIDFIQDQAFQGIKLHELTLRGN 214
Query: 404 ESLTNSVCEVFSDGGGCPMLKSLVLDNCEGL-----------TVVRFCSTSLVSLSLVGC 452
+ +N + L L E + C ++ L
Sbjct: 215 FNSSNIMKTCLQ---NLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYT 271
Query: 453 RAITALELK---CPILEKVCLDGCD--HIESASFVPVALQSLNLGICPKLSTLGIEAL-H 506
+ +K + + L G ++E QSL++ C +L L
Sbjct: 272 NDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF-KWQSLSIIRC-QLKQFPTLDLPF 329
Query: 507 MVVLELKGC-GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSI 565
+ L L G +S + P L+ LD S + C S + + L L +I
Sbjct: 330 LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI 389
Query: 566 GPDGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYK 623
+ L+ L LD ++ L + F S +L L +
Sbjct: 390 IMSA--NFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTN-TKIDFDGIF-- 444
Query: 624 KGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGA 673
L +L L ++ + + + + A T+LT + L+ C + ++WG
Sbjct: 445 -LGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC-QLEQISWGV 492
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 2e-08
Identities = 87/537 (16%), Positives = 162/537 (30%), Gaps = 102/537 (18%)
Query: 282 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRL 337
L L L CE I + A + L L L N + S S L L+N+
Sbjct: 54 NFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTG-NPIQSFSPGSFSGLTSLENLVA 111
Query: 338 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQ-ENLTSLALQCQCLQ 396
V L L S + L ++N+ N + L NLT+L
Sbjct: 112 VET------KLA--SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNL-------V 156
Query: 397 EVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAIT 456
VDL+ ++++ +++ + L R +SL + I
Sbjct: 157 HVDLSYNY------------------IQTITVNDLQFL---RENPQVNLSLDMSLNP-ID 194
Query: 457 ALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCG 516
I+ +F + L L L S + L + L
Sbjct: 195 ------------------FIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLA-GLHVHR 235
Query: 517 VLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 576
++ + + L + S L C + ++ + D + L
Sbjct: 236 LILGEFKDERNLEIFEPSIMEGL-----------CDVTIDEFRLTYTNDFSDDIVKFHCL 284
Query: 577 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLS 636
N++ + L+ + LE + + L + C+ +L LP L+ L L+
Sbjct: 285 ANVSAMSLAGVSIKYLED-VPKHFKWQSLSIIRCQLKQFPTL-------DLPFLKSLTLT 336
Query: 637 YGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENI 696
+ +I L+++ L+ N SGC + + + N
Sbjct: 337 M---NKGSISFKKVALPSLSYLDLSR--NALS----FSGCCSYSDLGTNSLRHLDLSFNG 387
Query: 697 HESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSL-NLSLSAN-LKEVDVACF--- 751
+ L+ L + + + + L L L +S K F
Sbjct: 388 AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 752 -NLCFLNLSNCCSLETLKLD----CPKLTSLFLQSCNIDEEGVESAITQCGMLETLD 803
+L L ++ + + LT L L C +++ L+ L+
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQIS-WGVFDTLHRLQLLN 503
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 8e-14
Identities = 80/558 (14%), Positives = 153/558 (27%), Gaps = 93/558 (16%)
Query: 269 NSSYCPNISLESV--RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 326
++ +L V L L L I + + ++ L++LEL + ++
Sbjct: 7 RIAFYRFCNLTQVPQVLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTID 65
Query: 327 LE----LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQ 382
E LP L+ + L + L L + + L L+
Sbjct: 66 KEAFRNLPNLRILDLGSS------KIYF--LHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117
Query: 383 --ENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFC 440
NL +L +DL+ + + + F LKS+ + + + C
Sbjct: 118 YFRNLKAL-------TRLDLSKNQIRSLYLHPSFG---KLNSLKSIDFSSNQ---IFLVC 164
Query: 441 STSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTL 500
L L + ++ L L F + L+ L++ S
Sbjct: 165 EHELEPLQG---KTLSFFSLAANSLYSRVSVDWGKC-MNPFRNMVLEILDV------SGN 214
Query: 501 GIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPL-IESLIL 559
G + + I + F +KD + + L L
Sbjct: 215 GWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGF-HNIKDPDQNTFAGLARSSVRHLDL 273
Query: 560 MSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNT 616
S+ +L++L +L+L+Y + + F L+VL L+
Sbjct: 274 SHGFVFSLNSR---VFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL------NLSYN 324
Query: 617 SLESLYKK--GSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGAS 674
L LY LP + +DL + + + + L+
Sbjct: 325 LLGELYSSNFYGLPKVAYIDLQKNHI------------AIIQDQTFKFLEKLQTLD--LR 370
Query: 675 GCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSS 734
+ + IF N ++ + N ++ R + +
Sbjct: 371 DNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLS---ENRLENLDILYFLLRVPH 427
Query: 735 L-NLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGV---- 789
L L L+ N + S P L LFL +
Sbjct: 428 LQILILNQN---------RFSSCSGDQTPSE------NPSLEQLFLGENMLQLAWETELC 472
Query: 790 ESAITQCGMLETLDVRFC 807
L+ L +
Sbjct: 473 WDVFEGLSHLQVLYLNHN 490
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 74.5 bits (183), Expect = 9e-14
Identities = 91/559 (16%), Positives = 173/559 (30%), Gaps = 86/559 (15%)
Query: 141 HALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI----RCPQLEHL 196
+A + ++P + RL ++ + V+ QL+ L
Sbjct: 6 GRIAFYR------------FCNLTQVPQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLL 53
Query: 197 SLKRSNMAQAV-----LNCPLLHLLDIASCH--KLSDAAIRLAATSCPQLESLDMSNCSC 249
L + N P L +LD+ S L A + L L + C
Sbjct: 54 ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQ----GLFHLFELRLYFCG- 108
Query: 250 VSDESLREIALS-CANLRILNSSYCPNISLES----VRLPMLTVLQLHSCEGITSASMAA 304
+SD L++ L L+ S SL +L L + S + I
Sbjct: 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCEHE 167
Query: 305 ISHSYM--LEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCA 362
+ L L +L + VS++ + N L++ + + N
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMN--PFRNMVLEILDVSGNGWTVDITGNF- 224
Query: 363 ALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM 422
+ + Q SL ++ +++ D L S
Sbjct: 225 -----SNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS------------ 267
Query: 423 LKSLVLDNCEGLTVVR----FCSTSLVSLSLVGCRAITALELKC----PILEKVCLDGC- 473
++ L L + + + L L+L + I + + L+ + L
Sbjct: 268 VRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNK-INKIADEAFYGLDNLQVLNLSYNL 325
Query: 474 -DHIESASFVP-VALQSLNLGICPKLSTLGIEALHMV--VLELKGCGVLSDAYINC-PLL 528
+ S++F + ++L ++ + + + + L L D + +
Sbjct: 326 LGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLD----LRDNALTTIHFI 380
Query: 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTF 588
S+ F S K L + + L + D LY L + +L +L L+
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTA---NLIHLSENRLENLDILYFLLRVPHLQILILNQNR 437
Query: 589 LTNLEP--VFESCLQLKVLKLQACK--YLTNTSLESLYKKGSLPALQELDLSYGTLCQSA 644
++ L+ L L T L +G L LQ L L++ L S
Sbjct: 438 FSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG-LSHLQVLYLNHNYL-NSL 495
Query: 645 IEELLAYCTHLTHVSLNGC 663
+ ++ T L +SLN
Sbjct: 496 PPGVFSHLTALRGLSLNSN 514
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 2e-09
Identities = 61/370 (16%), Positives = 117/370 (31%), Gaps = 59/370 (15%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH----DQLRRLE 177
L NL+ L L LG+ + + +++ N + I ++L+ L+
Sbjct: 313 LDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQ----KNHIAIIQDQTFKFLEKLQTLD 368
Query: 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP 237
+ + + P + + L + + +L+ + S ++L + I P
Sbjct: 369 LRDNALTTIHF-IPSIPDIFLSGNKLVTLPKINLTANLIHL-SENRLENLDILYFLLRVP 426
Query: 238 QLESLDMSN---------CSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTV 288
L+ L ++ + + SL ++ L L++ + E L L V
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG--LSHLQV 484
Query: 289 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT-SVSLELPRLQNIRLVHCRKFADLN 347
L L+ + S SH L L L++ L S + L+ L+
Sbjct: 485 LYLNHN-YLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEI-----------LD 532
Query: 348 LRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQC--------LQEVD 399
+ L + +L ++IT N C+C L +
Sbjct: 533 ISRNQLLAPNPDVFVSLSVLDITHNK----------------FICECELSTFINWLNHTN 576
Query: 400 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE 459
+T + C G L SL + C+ V++ SL + V
Sbjct: 577 VTIAGPPADIYCVYPDSFSGVS-LFSLSTEGCDEEEVLKSLKFSLFIVCTVTLTLFLMTI 635
Query: 460 LKCPILEKVC 469
L C
Sbjct: 636 LTVTKFRGFC 645
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 73.8 bits (181), Expect = 2e-13
Identities = 63/510 (12%), Positives = 152/510 (29%), Gaps = 100/510 (19%)
Query: 189 RCPQLEHLSL---KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 245
+ +L+ LS + + + L + H++ ++ +L D+
Sbjct: 345 QLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLL 404
Query: 246 NCSCVSDESLREIA-LSCANLRILNSSYCPN----ISLESVRLPMLTVLQLHSCE----- 295
+ + ++ I S +L+ N IS RL L ++ +
Sbjct: 405 QDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDN 464
Query: 296 -------------GITSASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVH 339
+ S+ L +EL NC +T + LP LQ++ +
Sbjct: 465 IAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIAC 524
Query: 340 CRKFADLNLRAMMLSSI--MVSNCAALHRINITSNSLQKL----SLQKQENLTSLALQ-- 391
R + + + + N+L++ SLQK L L
Sbjct: 525 NR-GISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHN 583
Query: 392 ----------CQCLQEVDLTDC--ESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 439
L ++ L E + C ++ L + + L +
Sbjct: 584 KVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCA------FTDQVEGLGFSHNK-LKYIP- 635
Query: 440 CSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLST 499
++ + ++ V + S I +
Sbjct: 636 ---NIFNAK------------SVYVMGSVDFSYNK-----------IGSEGRNISCSMDD 669
Query: 500 LGIEALHMVVLELKGC---GVLSDAYINCPLLTSLDASFC--SQLKDDCLSATTTS---C 551
+ ++ + L ++ + ++++ S + + ++ L +
Sbjct: 670 Y--KGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNT 727
Query: 552 PLIESLILMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQA 609
L+ ++ L + S+ D +L L+ +D+SY ++ + QLK ++
Sbjct: 728 YLLTTIDLRFNKLTSL-SDDF-RATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRH 785
Query: 610 CKYLTNTSLESLYKK--GSLPALQELDLSY 637
+ + + + P+L +L +
Sbjct: 786 QRDAEGNRILRQWPTGITTCPSLIQLQIGS 815
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 5e-11
Identities = 81/591 (13%), Positives = 156/591 (26%), Gaps = 110/591 (18%)
Query: 240 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITS 299
E+LD N S I N + ++ +T L L G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGF-GAKG 337
Query: 300 ASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 359
AI L+VL + S L + R + M + +
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER----KHRIRMHYKKMFLD 393
Query: 360 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGG 419
L+ ++ +++ + E L++ + + + + +
Sbjct: 394 YDQRLNLSDLLQDAINRNP----EMKPIKKDSRISLKDTQIGNLTNRITFISKAI---QR 446
Query: 420 CPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL---KCPILEKVCLDGCDHI 476
L+ + N T + + EL L V L C ++
Sbjct: 447 LTKLQIIYFANSP-FTYDNIA-VDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNM 504
Query: 477 ESASFVPVALQSLNLGICPKLSTLGIEA--LHMVVLELKGCGVLSDAYINCPLLTSLDAS 534
+P L L P+L +L I L+D P +
Sbjct: 505 TQ---LPDFLYDL-----PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMG 556
Query: 535 FCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP 594
+ + +E P SL+ + L +LD + + +L
Sbjct: 557 YNN----------------LEEF---------PASA-SLQKMVKLGLLDCVHNKVRHL-E 589
Query: 595 VFESCLQLKVLKLQACKYLTNTSLESLYKK--GSLPALQELDLSYGTLCQSAIEELLAYC 652
F + ++L L L +E + + ++ L S+ L
Sbjct: 590 AFGTNVKLTDL------KLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSV 643
Query: 653 THLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRL-LQNLN 711
+ V + YN G NI S+D + +
Sbjct: 644 YVMGSVDFS-----------------------YNKIGSEG-RNISCSMDDYKGINASTVT 679
Query: 712 CVGCPNIRKVFIPPQA--RCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKL 769
I+K P + +S++ LS + + + N N L T+ L
Sbjct: 680 LSYN-EIQK--FPTELFATGSPISTIILS-NNLMTSIPENSLKPKDGNYKNTYLLTTIDL 735
Query: 770 ---------------DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVR 805
P L+++ + + L+ +R
Sbjct: 736 RFNKLTSLSDDFRATTLPYLSNMDVSYNCF--SSFPTQPLNSSQLKAFGIR 784
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 55.3 bits (133), Expect = 8e-08
Identities = 59/547 (10%), Positives = 149/547 (27%), Gaps = 95/547 (17%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 181
L L+ L+ G + L + + + L +
Sbjct: 346 LTELKVLSFGTHSE-----TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQ---- 396
Query: 182 RVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLES 241
R+ + + + + ++ + ++ + AI+ +L+
Sbjct: 397 RLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQ----RLTKLQI 452
Query: 242 LDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSAS 301
+ +N + AN N L L LT ++L++C +T
Sbjct: 453 IYFANSPFTY--DNIAVDWEDANSDYAKQY--ENEELSWSNLKDLTDVELYNCPNMTQLP 508
Query: 302 MAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIR--LVHCRKFADLNLRAMMLSSIMVS 359
+ L+ L + N S + + K + L S
Sbjct: 509 -DFLYDLPELQSLNIAC-NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPAS 566
Query: 360 ----NCAALHRINITSNSLQKL-SLQKQENLTSLALQ--------------CQCLQEVDL 400
L ++ N ++ L + LT L L ++ +
Sbjct: 567 ASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGF 626
Query: 401 TDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE--------GLTVVRFCSTSLVSLSLVGC 452
+ L + +F+ ++ S+ + ++ + + +++L
Sbjct: 627 SHN-KLK-YIPNIFN-AKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN 683
Query: 453 R---AITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA--LHM 507
T L + + L + S + + N L+T+ + L
Sbjct: 684 EIQKFPTELFATGSPISTIILSNN-LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS 742
Query: 508 VVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIG- 566
+ + + P L+++D S+ + +++ + +
Sbjct: 743 LSDDFRAT--------TLPYLSNMDVSYN-CFSS--FPTQPLNSSQLKAFGIRHQRDAEG 791
Query: 567 -------PDGLYSLRSLQ------------------NLTMLDLSYTFLTNLE-PVFESCL 600
P G+ + SL L +LD++ +++ +
Sbjct: 792 NRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQLYILDIADNPNISIDVTSVCPYI 851
Query: 601 QLKVLKL 607
+ + L
Sbjct: 852 EAGMYVL 858
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 72.4 bits (178), Expect = 3e-13
Identities = 87/457 (19%), Positives = 152/457 (33%), Gaps = 52/457 (11%)
Query: 235 SCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTVL 289
S P+L+ LD+S C + D + + S ++L L + P SL L L L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQKL 105
Query: 290 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLR 349
+ S I H L+ L + + + S +LP + L+L
Sbjct: 106 VAVET-NLASLENFPIGHLKTLKELNVAHNLIQ---SFKLPEY----FSNLTNLEHLDLS 157
Query: 350 AMMLSSIMVSNCAALH-------RINITSNSLQKLSLQ--KQENLTSLAL-QCQCLQEVD 399
+ + SI ++ LH ++++ N + + K+ L L L V
Sbjct: 158 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217
Query: 400 LTDCESLTNSVCE--VFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITA 457
T + L V + L+ EGL + L L I
Sbjct: 218 KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL-DDIID 276
Query: 458 LELKCPILEKVCLDGCD--HIESASFVPVALQSLNLGICPKLSTLGIEAL----HMVVLE 511
L + L ++ S+ Q L L C K L +
Sbjct: 277 LFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNC-KFGQFPTLKLKSLKRLTFTS 334
Query: 512 LKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLY 571
KG S+ ++ P L LD S C S + ++ L L I
Sbjct: 335 NKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--S 390
Query: 572 SLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKK--GSL 627
+ L+ L LD ++ L + VF S L L +++T + L
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHTHTRVAFNGIFNGL 444
Query: 628 PALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664
+L+ L ++ + ++ + ++ +LT + L+ C
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ 481
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 1e-11
Identities = 89/504 (17%), Positives = 149/504 (29%), Gaps = 81/504 (16%)
Query: 189 RCPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCH--KLSDAAIRLAATSCPQLESL 242
P+L+ L L R + A + L L + L+ A L+ L
Sbjct: 50 SFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS----GLSSLQKL 105
Query: 243 DMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESVR----LPMLTVLQLHSC-- 294
+ + + + L+ LN ++ S + L L L L S
Sbjct: 106 VAVETNLASLENFPIG----HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161
Query: 295 EGITSASMAAISH-SYMLEVLELDNCNLLTSV---SLELPRLQNIRLVHCRKFADL---- 346
+ I + + + L+L N + + + + RL + L + ++
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSL-NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTC 220
Query: 347 ----------------NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLAL 390
L S L + I L L +++ L
Sbjct: 221 IQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY-LDDIIDLFN 279
Query: 391 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLV 450
+ L ++ D + L L NC+ SL L+
Sbjct: 280 CLTNVSSFSLVSV-TIER-----VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT 333
Query: 451 GCRAITAL-ELKCPILEKVCLDGCDH-----IESASFVPVALQSLNLGICPKLSTLGIEA 504
+ A E+ P LE + L + F +L+ L+L + T+
Sbjct: 334 SNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNF 392
Query: 505 LHMVVLE--------LKGCGVLSDAYINCPLLTSLDASFC--SQLKDDCLSATTTSCPLI 554
L + LE LK S +++ L LD S + + +
Sbjct: 393 LGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISHTHTRVAFNGIFN----GLSSL 447
Query: 555 ESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYL 613
E L + L+NLT LDLS L L P F S L+VL +
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-F 506
Query: 614 TNTSLESLYKKGSLPALQELDLSY 637
+ L +LQ LD S
Sbjct: 507 FSLDTFPY---KCLNSLQVLDYSL 527
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 9e-09
Identities = 81/540 (15%), Positives = 157/540 (29%), Gaps = 88/540 (16%)
Query: 120 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI----NHDQLRR 175
L+ L L R ++ A S L +L + GN +Q + + L++
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILT----GNPIQSLALGAFSGLSSLQK 104
Query: 176 LEITKCRVMRVSIR----CPQLEHLSL-----KRSNMAQAVLNCPLLHLLDIASCH--KL 224
L + + + L+ L++ + + + N L LD++S +
Sbjct: 105 LVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164
Query: 225 SDAAIRLAATSCPQLESLDMSNC-------SCVSDESLREIALSCANLRILNSSYCPNIS 277
+R+ SLD+S + L ++ L + C
Sbjct: 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQ-G 223
Query: 278 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL 337
L + + L + + + + +A+ L + E L + + +
Sbjct: 224 LAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTN 283
Query: 338 VHCRKFADLNLRAMMLSSIM-VSNCAALHRINITSNSLQKLSLQKQENLTSLAL------ 390
V +L ++ + + S + + + + K ++L L
Sbjct: 284 VSS-----FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGG 338
Query: 391 ------QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRFCST 442
L+ +DL+ L+ C SD G LK L L ++
Sbjct: 339 NAFSEVDLPSLEFLDLSRN-GLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLE 396
Query: 443 SLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGI 502
L L L + L L++
Sbjct: 397 QLEHLDFQHSN----------------LKQMSEFSVFLSLR-NLIYLDISHT-HTRVAFN 438
Query: 503 EAL----HMVVLELKGC----GVLSDAYINCPLLTSLDASFC--SQLKDDCLSATTTSCP 552
+ VL++ G L D + LT LD S C QL + S
Sbjct: 439 GIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFN----SLS 494
Query: 553 LIESLILMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCL-QLKVLKLQ 608
++ L + S+ + L +L +LD S + + + L L L
Sbjct: 495 SLQVLNMSHNNFFSLDTF---PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 551
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 1e-08
Identities = 78/545 (14%), Positives = 157/545 (28%), Gaps = 98/545 (17%)
Query: 111 IHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH 170
I L + A S L +L+ L L + LK LNV N +Q +
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVA----HNLIQSFKL-P 142
Query: 171 DQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIR 230
+ L LEHL L + + ++ D+ H++ +
Sbjct: 143 EYFSNL--------------TNLEHLDLSSNKIQS-------IYCTDLRVLHQMPLLNLS 181
Query: 231 LAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQ 290
L + + + + L ++ L + C L + + L + +
Sbjct: 182 LDLSLN-PMNFIQPGAFKEI---RLHKLTLRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGE 236
Query: 291 LHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRA 350
+ + +A+ L + E L + + + V +L +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSS-----FSLVS 291
Query: 351 MMLSSIM-VSNCAALHRINITSNSLQKLSLQKQENLTSLAL------------QCQCLQE 397
+ + + S + + + + K ++L L L+
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 398 VDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRFCSTSLVSLSLVGCRAI 455
+DL+ L+ C SD G LK L L ++ L L
Sbjct: 352 LDLSRN-GLSFKGCCSQSD-FGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSN-- 407
Query: 456 TALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC 515
L + L L++ +
Sbjct: 408 --------------LKQMSEFSVFLSLR-NLIYLDISHT-HTRVAFNGIFN--------- 442
Query: 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ--SIGPDGLYSL 573
L L + +++ L T + L L CQ + P +
Sbjct: 443 --------GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFLDLSQCQLEQLSPT---AF 490
Query: 574 RSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632
SL +L +L++S+ +L+ ++ L+VL + + + L + +L
Sbjct: 491 NSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQEL--QHFPSSLAF 547
Query: 633 LDLSY 637
L+L+
Sbjct: 548 LNLTQ 552
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 2e-07
Identities = 88/545 (16%), Positives = 164/545 (30%), Gaps = 120/545 (22%)
Query: 311 LEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRI 367
+ L+L L S +++ L+L + +I + + L +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQV--------LDLSRCEIQTIEDGAYQSLSHLSTL 81
Query: 368 NITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLV 427
+T N +Q L+L L+SL Q++ + +L + G LK L
Sbjct: 82 ILTGNPIQSLALGAFSGLSSL-------QKLVAVET-NLASLENFPI---GHLKTLKELN 130
Query: 428 LDNCEGLTVVRFCS-----TSLVSLSLVGCR-------AITALELKCPILEKVCLDGCD- 474
+ + + + T+L L L + + L + + L
Sbjct: 131 VAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM 189
Query: 475 -HIESASFVPVALQSLNL------GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPL 527
I+ +F + L L L K G+ L + L L + N
Sbjct: 190 NFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL-------GEFRNEGN 242
Query: 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT 587
L D S L + IE L D + L N++ L
Sbjct: 243 LEKFDKSALEGLCN----------LTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSV 292
Query: 588 FLTNLEPVFESCLQLKVLKLQACK---------------YLTNTSLESLYKKGSLPALQE 632
+ ++ F + L+L CK T+ + + + LP+L+
Sbjct: 293 TIERVKD-FSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF 351
Query: 633 LDLSY-GTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIF 691
LDLS G + + T L ++ L+ + ++ G +
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN-GVITMSSNFLGLE-------------- 396
Query: 692 PHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSL-NLSLSAN-LKEVDVA 749
+ Q + L Q + + L +L L +S +
Sbjct: 397 ---QLEHLDFQHSNLKQ--------------MSEFSVFLSLRNLIYLDISHTHTRVAFNG 439
Query: 750 CF----NLCFLNLSNCCSLETLKLD----CPKLTSLFLQSCNIDEEGVESAITQCGMLET 801
F +L L ++ E D LT L L C +++ +A L+
Sbjct: 440 IFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS-PTAFNSLSSLQV 498
Query: 802 LDVRF 806
L++
Sbjct: 499 LNMSH 503
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 71.3 bits (175), Expect = 5e-13
Identities = 87/460 (18%), Positives = 157/460 (34%), Gaps = 58/460 (12%)
Query: 234 TSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTV 288
S P+L+ LD+S C + D + + S ++L L + P SL L L
Sbjct: 49 FSFPELQVLDLSRCEIQTIEDGAYQ----SLSHLSTLILTGNPIQSLALGAFSGLSSLQK 104
Query: 289 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-----LPRLQ-------NIR 336
L + S I H L+ L + + NL+ S L L L+ I+
Sbjct: 105 LVAVET-NLASLENFPIGHLKTLKELNVAH-NLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162
Query: 337 LVHCRKFADL-NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQK---QENLTSLALQC 392
++C L + + LS + N I + +++ L K + N SL +
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLN----PMNFIQPGAFKEIRLHKLTLRNNFDSLNVMK 218
Query: 393 QCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGC 452
C+Q L E + E + L+ EGL + L L
Sbjct: 219 TCIQ--GLAGLEVHRLVLGEFRN----EGNLEKFDKSALEGLCNLTIEEFRLAYLDYY-L 271
Query: 453 RAITALELKCPILEKVCLDGCD--HIESASFVPVALQSLNLGICPKLSTLGIEALHMVVL 510
I L + L ++ S+ Q L L C ++ + L
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKSLKRL 330
Query: 511 ELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ--SIGP 567
+ + ++ P L LD S C S + ++ L L ++
Sbjct: 331 TFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSS 390
Query: 568 DGLYSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKK- 624
+ L+ L LD ++ L + VF S L L +++T +
Sbjct: 391 N----FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL------DISHTHTRVAFNGI 440
Query: 625 -GSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
L +L+ L ++ + ++ + ++ +LT + L+ C
Sbjct: 441 FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC 480
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 58.2 bits (141), Expect = 8e-09
Identities = 93/553 (16%), Positives = 175/553 (31%), Gaps = 87/553 (15%)
Query: 120 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI----NHDQLRR 175
+L + + L L L ++ L+ L+++ +Q I + L
Sbjct: 25 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS----RCEIQTIEDGAYQSLSHLST 80
Query: 176 LEITKCRVMRVSIR----CPQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCHKLSDA 227
L +T + +++ L+ L +N+A + + L L++A +
Sbjct: 81 LILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-LIQSF 139
Query: 228 AIRLAATSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCP--NISLESVRL 283
+ ++ LE LD+S+ + LR + L+ S P I + +
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE 199
Query: 284 PMLTVLQLHSCEGITSASMAAISHSYMLEVLELD-----NCNLLTSVSLE-LPRLQNIRL 337
L L L + + I LEV L N L L L N+ +
Sbjct: 200 IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259
Query: 338 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS----LQKQENLTSLALQCQ 393
R A L+ + + + + ++ S +++++ ++L + +
Sbjct: 260 EEFR-LAYLDYYLDDIID-LFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317
Query: 394 CLQEVDLTDCESLTNSVC--EVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVG 451
+ L + LT + P L+ L L L+ CS S
Sbjct: 318 QFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG-LSFKGCCSQSDFGT---- 372
Query: 452 CRAITALELKCPILEKVCLDGC--DHIESASFVPVALQSLNLGICPKLSTLGIEALHMVV 509
L+ + L + S L+ L+ L +
Sbjct: 373 -----------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHS-NLKQMS-------- 412
Query: 510 LELKGCGVLSDAYINCPLLTSLDASFC--SQLKDDCLSATTTSCPLIESLILMSCQ---S 564
+++ L LD S + + +E L + +
Sbjct: 413 --------EFSVFLSLRNLIYLDISHTHTRVAFNGIFN----GLSSLEVLKMAGNSFQEN 460
Query: 565 IGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYK 623
PD L+NLT LDLS L L P F S L+VL + + + L +
Sbjct: 461 FLPD---IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ-LKSVPDGIF-- 514
Query: 624 KGSLPALQELDLS 636
L +LQ++ L
Sbjct: 515 -DRLTSLQKIWLH 526
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 6e-04
Identities = 84/557 (15%), Positives = 160/557 (28%), Gaps = 112/557 (20%)
Query: 273 CPNISLESV--RLPM-LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT---SVS 326
C ++ + LP L L + + L+VL+L C + T
Sbjct: 14 CMELNFYKIPDNLPFSTKNLDLSFNP-LRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY 72
Query: 327 LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLS---LQKQE 383
L L + L +++ L+ S ++L ++ +L L + +
Sbjct: 73 QSLSHLSTLILTGNP------IQS--LALGAFSGLSSLQKLVAVETNLASLENFPIGHLK 124
Query: 384 NLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTS 443
L L + +Q L E FS L+ L L +
Sbjct: 125 TLKELNVAHNLIQSFKL----------PEYFS---NLTNLEHLDLSSN------------ 159
Query: 444 LVSLSLVGCRAITALELKCPILEKVCLDGCD--HIESASFVPVALQSLNLGICPKLSTLG 501
+ + C + L + + L I+ +F + L L L +
Sbjct: 160 --KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVM 217
Query: 502 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMS 561
+ + L+ ++ + N L D S L + IE L
Sbjct: 218 KTCIQGLA-GLEVHRLVLGEFRNEGNLEKFDKSALEGLCN----------LTIEEFRLAY 266
Query: 562 CQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESL 621
D + L N++ L + ++ F + L+L CK+ +L
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD-FSYNFGWQHLELVNCKFGQFPTL--- 322
Query: 622 YKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFES 681
L +L+ L + +A E+ L + L+ G
Sbjct: 323 ----KLKSLKRLTFTSNKG-GNAFSEV--DLPSLEFLDLSRNG----------------- 358
Query: 682 PSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSL-NLSLS 740
+ D L+ L+ + + + L L +L
Sbjct: 359 ---------LSFKGCCSQSDFGTTSLKYLDLSFN-GVITM----SSNFLGLEQLEHLDFQ 404
Query: 741 AN-LKEVDVACF-----NLCFLNLSNCCSLETLKLDC----PKLTSLFLQSCNIDEEGVE 790
+ LK++ NL +L++S+ L L + + E +
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463
Query: 791 SAITQCGMLETLDVRFC 807
T+ L LD+ C
Sbjct: 464 DIFTELRNLTFLDLSQC 480
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 69.8 bits (171), Expect = 2e-12
Identities = 84/467 (17%), Positives = 160/467 (34%), Gaps = 71/467 (15%)
Query: 237 PQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQL 291
++SLD+S + + LR +CANL++L ++E L L L L
Sbjct: 26 AAMKSLDLSFNKITYIGHGDLR----ACANLQVLILKSSRINTIEGDAFYSLGSLEHLDL 81
Query: 292 HSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL-----ELPRLQNIRLVHCRKFADL 346
++S S + L+ L L N ++ + L LQ +R+ +
Sbjct: 82 SDNH-LSSLSSSWFGPLSSLKYLNLMG-NPYQTLGVTSLFPNLTNLQTLRIGN------- 132
Query: 347 NLRAMMLSSIMVSNCAALHRINITSNSLQKL---SLQKQENLTSLALQCQCLQEVDLTDC 403
+ I + +L+ + I + SL+ SL+ ++ L L +
Sbjct: 133 VETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA 192
Query: 404 ESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCP 463
+ L++ D + L E + ++ + L+ + L
Sbjct: 193 DILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYIL 251
Query: 464 ILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYI 523
L +V D C F P ++ K+ T+ I LH+ L LS Y
Sbjct: 252 ELSEVEFDDCTLNGLGDFNPSESDVVSEL--GKVETVTIRRLHIPQFYLFY--DLSTVYS 307
Query: 524 NCPLLTSLD----------ASFCSQLK---------------DDCLSATTTSCPLIESLI 558
+ + SF LK SA + P +++L+
Sbjct: 308 LLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367
Query: 559 LMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNT 616
L S+ G L +L+NLT LD+S + + +++ L L++T
Sbjct: 368 LSQNHLRSMQKTG-EILLTLKNLTSLDISRNTFHPMPDSCQWPEKMRFL------NLSST 420
Query: 617 SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
+ + K L+ LD+S + ++ + L + ++
Sbjct: 421 GIRVV-KTCIPQTLEVLDVSN-----NNLDSFSLFLPRLQELYISRN 461
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 7e-10
Identities = 95/599 (15%), Positives = 185/599 (30%), Gaps = 110/599 (18%)
Query: 235 SCPQLESLDMSNCSCVS-----DESLREIALSCANLRILNSSYCPNISLESVRLPMLTVL 289
SC D + S S +++ + LS + + L VL
Sbjct: 3 SCDASGVCDGRSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRA-------CANLQVL 55
Query: 290 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFAD 345
L S I + A LE L+L + N L+S+S L L+ + L+
Sbjct: 56 ILKSSR-INTIEGDAFYSLGSLEHLDLSD-NHLSSLSSSWFGPLSSLKYLNLMG------ 107
Query: 346 LNLRAMMLSSIMVSNCAALHRINITSN----SLQKLSLQKQENLTSLALQCQCLQEVDLT 401
N + + + N L + I + ++++ +L L ++ L+
Sbjct: 108 -NPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166
Query: 402 DCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELK 461
+S+ + + L L E S L+ + ++ LEL+
Sbjct: 167 SLKSIRD--------------IHHLTLHLSE--------SAFLLEIFADILSSVRYLELR 204
Query: 462 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA 521
L + S V + ++ L +
Sbjct: 205 DTNLARFQF-------SPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257
Query: 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 581
+ +C L D + L I L + + D L+ +
Sbjct: 258 FDDCTLNGLGDFNPSESDVVSELG--KVETVTIRRLHIPQFY-LFYDLSTVYSLLEKVKR 314
Query: 582 LDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY--- 637
+ + + + + + L+ L L + L++ KG+ P+LQ L LS
Sbjct: 315 ITVENSKVFLVPCSFSQHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNHL 373
Query: 638 GTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIH 697
++ ++ E+L +LT + ++ +
Sbjct: 374 RSMQKTG--EILLTLKNLTSLDISRN----------------------------TFHPMP 403
Query: 698 ESIDQPNRLLQNLNCVGCPNIRKVF--IPPQARCFHLSSLNLSLSANLKEVDVACFNLCF 755
+S P + ++ LN IR V IP L L++S + NL + L
Sbjct: 404 DSCQWPEK-MRFLNLSST-GIRVVKTCIPQ-----TLEVLDVS-NNNLDSFSLFLPRLQE 455
Query: 756 LNLSNCCSLETLKLD--CPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICS 812
L +S L+TL P L + + + + + + L+ + + P CS
Sbjct: 456 LYISR-NKLKTLPDASLFPVLLVMKISRNQL-KSVPDGIFDRLTSLQKIWLHTNPWDCS 512
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 7e-08
Identities = 80/548 (14%), Positives = 166/548 (30%), Gaps = 107/548 (19%)
Query: 259 ALSCANLRILNSSYCPNISLESV---RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLE 315
+LSC + + + S S+ + L L + IT + L+VL
Sbjct: 1 SLSCDASGVCD---GRSRSFTSIPSGLTAAMKSLDLSFNK-ITYIGHGDLRACANLQVLI 56
Query: 316 LDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQ 375
L + I + F L +L ++++ N L
Sbjct: 57 LKSSR--------------INTIEGDAFYSL---------------GSLEHLDLSDNHLS 87
Query: 376 KLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLT 435
LS L+SL + ++L T V +F L++L + N E +
Sbjct: 88 SLSSSWFGPLSSL-------KYLNLMGNPYQTLGVTSLF---PNLTNLQTLRIGNVETFS 137
Query: 436 VVR---FCS-TSLVSLSLVGCRAITALELKC----PILEKVCLDGCDHIESASFVPVALQ 487
+R F TSL L + + + + + + L + L
Sbjct: 138 EIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILS 196
Query: 488 SLNLGICPKLSTLGIEALHMVVL-ELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSA 546
S+ +L + L + + +LT + +L L
Sbjct: 197 SVR---YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253
Query: 547 TTTSCPLIESLILMSCQSIGPDGLYSLRSLQ--NLTMLDLSYTFLTNLEP-VFESCLQLK 603
+ L D + L ++ + L + +L V+ ++K
Sbjct: 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313
Query: 604 VLKLQACKYLTNTSLESLYKK--GSLPALQELDLSYGTLCQSAIEE--LLAYCTHLTHVS 659
+ + N+ + + L +L+ LDLS + + ++ L +
Sbjct: 314 RI------TVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLV 367
Query: 660 LNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIR 719
L+ ++ + ++ L +L+
Sbjct: 368 LSQN-HLRSMQKTGEILLTLKN-------------------------LTSLDISRN-TFH 400
Query: 720 KVFIPPQARCFHLSSL-NLSLSAN-LKEVDVACF-NLCFLNLSNCCSLETLKLDCPKLTS 776
+P C + L+LS+ ++ V L L++SN +L++ L P+L
Sbjct: 401 P--MPDS--CQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNN-NLDSFSLFLPRLQE 455
Query: 777 LFLQSCNI 784
L++ +
Sbjct: 456 LYISRNKL 463
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 3e-05
Identities = 47/326 (14%), Positives = 97/326 (29%), Gaps = 22/326 (6%)
Query: 78 LNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGD 137
LN + N + I + + L +L L + L +
Sbjct: 103 LNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN 162
Query: 138 AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 197
+L + L ++ + ++ +R LE+ + R ++ +S
Sbjct: 163 YQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVS 222
Query: 198 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257
+A ++ + + C D + SD
Sbjct: 223 SPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSE--SDVVSEL 280
Query: 258 IALSCANLRILNSSYCPNISLESV---RLPMLTVLQLHSCEGITSASMAAISHSYMLEVL 314
+ +R L+ S L + + + + + + + H LE L
Sbjct: 281 GKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK-VFLVPCSFSQHLKSLEFL 339
Query: 315 ELDNCNLLTSVSLE-------LPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRI 367
+L NL+ L+ P LQ + L LR+M + ++ L +
Sbjct: 340 DLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQNH------LRSMQKTGEILLTLKNLTSL 392
Query: 368 NITSNSLQKL--SLQKQENLTSLALQ 391
+I+ N+ + S Q E + L L
Sbjct: 393 DISRNTFHPMPDSCQWPEKMRFLNLS 418
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 5e-12
Identities = 69/554 (12%), Positives = 155/554 (27%), Gaps = 96/554 (17%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATL-GNGVQEIPINHDQLRRLEITK 180
+ L+L A+ + L+ L + N P E +
Sbjct: 80 NGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 181 CRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLE 240
MR+ + +++ + L I S + +I+ ++ +
Sbjct: 140 K--MRMHYQKTFVDYDPR---------EDFSDLIKDCINSDPQQK--SIKKSSRITLKDT 186
Query: 241 SLDMSNCSCVS-DESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITS 299
+ + + +++ LR P ++ +
Sbjct: 187 QIGQLSNNITFVSKAVMR----LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTED 242
Query: 300 ASMAAISHSYMLEVLELDNCNLLTSVSLE---LPRLQNIRLVHCRKFADLNLRAMMLSSI 356
+ L +E+ NC LT + LP +Q I + R + L+ +
Sbjct: 243 LKWDNLKD---LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 357 MVSNCAALHRINITSNSLQKL----SLQKQENLTSLAL-------------QCQCLQEVD 399
+ I I N+L+ SLQK + L L L ++
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN 359
Query: 400 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRFCS--TSLVSLSLVGCRAI 455
L +T G +++L + + + + + + ++
Sbjct: 360 LAYN-QITEIPANFC---GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNE-- 413
Query: 456 TALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC 515
+ V D ++ F + + S+NL ++S
Sbjct: 414 ---------IGSVDGKNFDPLDPTPFKGINVSSINLSNN-QIS----------------- 446
Query: 516 GVLSDAYINCPLLTSLDASFCS-----QLKDDCLSATTTSCPLIESLILMSCQ--SIGPD 568
+ + L+S++ + + + L+ S+ L + + D
Sbjct: 447 KFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL-SD 505
Query: 569 GLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSL-----ESLYK 623
+L L +DLSY + + LK ++ + E +
Sbjct: 506 DF-RATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGI-- 562
Query: 624 KGSLPALQELDLSY 637
P+L +L +
Sbjct: 563 -TLCPSLTQLQIGS 575
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 72/547 (13%), Positives = 158/547 (28%), Gaps = 112/547 (20%)
Query: 286 LTVLQLHSC--EGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPR-LQNIRLVHCRK 342
+T L L G ++ ++ LEVL L + + L P+ + ++
Sbjct: 83 VTGLSLEGFGASGRVPDAIGQLTE---LEVLALGSHGEKVNERLFGPKGISANMSDEQKQ 139
Query: 343 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTD 402
++ + + + + L + I S+ QK + ++
Sbjct: 140 KMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD-------TQIGQ-- 190
Query: 403 CESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALEL-K 461
L+N++ V L+ + N + + + L+
Sbjct: 191 ---LSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDN 247
Query: 462 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIE--ALHMVVLELKGCGVLS 519
L V + C ++ +P L++L P++ + + L+
Sbjct: 248 LKDLTDVEVYNCPNLTK---LPTFLKAL-----PEMQLINVACNRGISGEQLKDDWQALA 299
Query: 520 DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNL 579
DA + + + + +++ + + SL+ ++ L
Sbjct: 300 DAP-VGEKIQIIYIGYNN----------------LKTFPVET----------SLQKMKKL 332
Query: 580 TMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK--GSLPALQELDLSY 637
ML+ Y L P F S ++L L L + + G ++ L ++
Sbjct: 333 GMLECLYNQLEGKLPAFGSEIKLASL------NLAYNQITEIPANFCGFTEQVENLSFAH 386
Query: 638 GTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIH 697
L + ++ + + YN G +N
Sbjct: 387 NKLKYIPNIFDAKSVSVMSAIDFS-----------------------YNEIGSVDGKNFD 423
Query: 698 ESIDQPNRL--LQNLNCVGCPNIRKVFIPPQARCFHLSSLN-LSLSAN-LKEVDVACFNL 753
P + + ++N + I K P + S L+ ++L N L E+
Sbjct: 424 PLDPTPFKGINVSSIN-LSNNQISK--FPKEL-FSTGSPLSSINLMGNMLTEIPKNSLKD 479
Query: 754 CFLNLSNCCSLETLKLD---------------CPKLTSLFLQSCNIDEEGVESAITQCGM 798
N N L ++ L P L + L + +
Sbjct: 480 ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSF--SKFPTQPLNSST 537
Query: 799 LETLDVR 805
L+ +R
Sbjct: 538 LKGFGIR 544
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 4e-06
Identities = 31/273 (11%), Positives = 74/273 (27%), Gaps = 39/273 (14%)
Query: 555 ESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ-LKVLKLQACKYL 613
E L L S + L+ + + + + + F L
Sbjct: 108 EVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCIN 167
Query: 614 TNTSLESLYK-KGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWG 672
++ +S+ K ++ + + + + + T L +
Sbjct: 168 SDPQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPF------- 218
Query: 673 ASGCQPFESPSVYNSCGIFPHENIHESIDQPNRL--LQNLNCVGCPNIRKVFIPPQ-ARC 729
E+ NS ++ + L L ++ CPN+ K +P
Sbjct: 219 -VAENICEAWENENSEYAQQYKTEDLKW---DNLKDLTDVEVYNCPNLTK--LPTFLKAL 272
Query: 730 FHLSSLNLSLSANLKEVDVACFNLCFL-NLSNCCSLETLKLD---------------CPK 773
+ +N++ + + L + ++ + + K
Sbjct: 273 PEMQLINVA-CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKK 331
Query: 774 LTSLFLQSCNIDEEGVESAITQCGMLETLDVRF 806
L L + EG A L +L++ +
Sbjct: 332 LGMLECLYNQL--EGKLPAFGSEIKLASLNLAY 362
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 6e-05
Identities = 77/639 (12%), Positives = 175/639 (27%), Gaps = 184/639 (28%)
Query: 235 SCPQLESLDMSNCS---CVSDE-----SLREIALSCANLRILNSSYCPNISLESVRLPML 286
S ++ L + V D L +AL ++ + P ++
Sbjct: 79 SNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQK 138
Query: 287 TVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADL 346
+++H + + + + +L + + S + ++ R+ K +
Sbjct: 139 QKMRMHYQKTF-------VDYDPREDFSDLIK-DCINSDPQQKSIKKSSRI--TLKDTQI 188
Query: 347 NLRAMMLSSI--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCE 404
+ ++ + V L + + ++ ++ + + Q + DL
Sbjct: 189 GQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEY-AQQYKTEDLK--- 244
Query: 405 SLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV--RFCS-TSLVSLSLVGCRAITALELK 461
L + + NC LT + + + +++ R I+ +LK
Sbjct: 245 ------------WDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLK 292
Query: 462 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA 521
+ +Q + +G L T +E L
Sbjct: 293 DDWQALADAPVGEK----------IQIIYIGYN-NLKTFPVET------------SLQ-- 327
Query: 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 581
L L+ + +E + P + S L
Sbjct: 328 --KMKKLGMLECLYNQ----------------LEGKL--------P----AFGSEIKLAS 357
Query: 582 LDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY--- 637
L+L+Y +T + Q++ L K L + +++ S+ + +D SY
Sbjct: 358 LNLAYNQITEIPANFCGFTEQVENLSFAHNK-LK--YIPNIFDAKSVSVMSAIDFSYNEI 414
Query: 638 ---GTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHE 694
++ +++ ++L+
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNN------------------------------- 443
Query: 695 NIHESIDQPNRLLQNLNCV--------GCPNIRKVFIPPQ-ARCFHLSSLNLS---LSAN 742
I + + L+ + P + L+S++L L+
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKL 503
Query: 743 LKEVDVA-CFNLCFLNLS------------NCCSLETLKL-------------------- 769
+ L ++LS N +L+ +
Sbjct: 504 SDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGIT 563
Query: 770 DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCP 808
CP LT L + S +I V IT + LD++ P
Sbjct: 564 LCPSLTQLQIGSNDI--RKVNEKITPN--ISVLDIKDNP 598
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.3 bits (166), Expect = 7e-12
Identities = 79/493 (16%), Positives = 150/493 (30%), Gaps = 148/493 (30%)
Query: 239 LESLDMSNCSCVSDESLREIALSCANLR-ILNSSYCPNISLESVRLPMLTVLQLHSCEGI 297
+++ D C V D + I LS + I+ S + ++RL L E +
Sbjct: 30 VDNFD---CKDVQD-MPKSI-LSKEEIDHIIMS---KDAVSGTLRL--FWTLLSKQEEMV 79
Query: 298 TSASMAAISHSYMLEVLELDNCNLLTSVSLEL--PRLQNIRLVHCRKFADLNLRAMMLSS 355
++ EVL ++ L++ + E P + + R
Sbjct: 80 ---------QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRD------------- 117
Query: 356 IMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFS 415
R+ + K ++ + + L Q L E+ V
Sbjct: 118 ----------RLYNDNQVFAKYNVSRLQPYLKLR---QALLELR---------PAKNVLI 155
Query: 416 DG-GGCPMLKS-LVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCL--- 470
DG G K+ + LD C V + L+L C + + L+ +L+K+
Sbjct: 156 DGVLGSG--KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-LE--MLQKLLYQID 210
Query: 471 -DGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAY------- 522
+ + +S + + + S+ +L L + L L VL +
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQ----AELRRLLKSKPYENCL-L----VLLNVQNAKAWNA 261
Query: 523 --INCP-LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNL 579
++C LLT+ D LSA TT+ ++ L
Sbjct: 262 FNLSCKILLTTRFKQVT-----DFLSAATTTHISLDHH---------SMTLTPDEVKS-- 305
Query: 580 TMLDLSYTFLTNLEPVFESCLQLKVLKL--QACKYLTNTSLESLYKKGSLPALQELDLSY 637
+ L + L + TN S+ + ++++ ++
Sbjct: 306 ---------------LLLKYLDCRPQDLPREVLT--TNPRRLSIIAE----SIRDGLATW 344
Query: 638 GTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIH 697
++L T + SLN L P E +++ +FP
Sbjct: 345 DNWKHVNCDKL----TTIIESSLN------VLE-------PAEYRKMFDRLSVFP----- 382
Query: 698 ESIDQPNRLLQNL 710
S P LL +
Sbjct: 383 PSAHIPTILLSLI 395
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.8 bits (136), Expect = 3e-08
Identities = 52/394 (13%), Positives = 108/394 (27%), Gaps = 110/394 (27%)
Query: 32 LLVEMTV---EMIMVLQK--QKIWKSGWI-LQ-MTYCIWQWRAASAHED----------- 73
+ + V + + L++ ++ + + + + W A
Sbjct: 125 VFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKI 184
Query: 74 FWRCLNFENRKIS---VEQFEDVCQRY-PNATEVNIYGAPAIH----------------- 112
FW LN +N +E + + + PN T + + +
Sbjct: 185 FW--LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP 242
Query: 113 ----LLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSML---KSLNVNDATLGNGVQE 165
LLV+ V + A L C +L + V D
Sbjct: 243 YENCLLVLLNVQNAKAWNAFNLS--------------CKILLTTRFKQVTDFLSAATTTH 288
Query: 166 IPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLS 225
I ++H + +T V + ++ L R + + P + IA +
Sbjct: 289 ISLDH---HSMTLTPDEVKSLLLKYLDCRPQDLPR----EVLTTNPRRLSI-IAE--SIR 338
Query: 226 DAAIRLAATSCPQLESLDMSNCSCV---SDESLREIALSCANLRILNSSYCPNISLESVR 282
D + L S + R++ + + S
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS---VFP---------PSAH 386
Query: 283 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRK 342
+P +L L + I S M ++ + ++E S+
Sbjct: 387 IPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-------------P--- 429
Query: 343 FADLNLRAMMLSSIMVSNCAALHRINITSNSLQK 376
+ L + + N ALHR + ++ K
Sbjct: 430 --SIYLE----LKVKLENEYALHRSIVDHYNIPK 457
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 46.0 bits (108), Expect = 6e-05
Identities = 44/248 (17%), Positives = 74/248 (29%), Gaps = 83/248 (33%)
Query: 582 LDLSYTFLTNLEPVFESCLQLKVLKLQACKY--------LTNTSLESLYKKGSLPALQEL 633
Y ++ VFE + CK L+ ++ + A+
Sbjct: 14 HQYQYK---DILSVFED----AFVDNFDCKDVQDMPKSILSKEEIDHIIMSKD--AVSGT 64
Query: 634 DLSYGTLC-------QSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQP-FESPS-- 683
+ TL Q +EE+L + + S + PS
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRI----------------NYKFLMSPIKTEQRQPSMM 108
Query: 684 ----------VYNSCGIFPHENI--HESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFH 731
+YN +F N+ + + + L L P + V I
Sbjct: 109 TRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELR----PA-KNVLI-------D 156
Query: 732 ------LSSLNLSLSANLKEVDVACFNLCFLNLSNCCS-------LETL--KLDCPKLTS 776
+ + L + + K F + +LNL NC S L+ L ++D P TS
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTS 215
Query: 777 LFLQSCNI 784
S NI
Sbjct: 216 RSDHSSNI 223
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 2e-11
Identities = 75/439 (17%), Positives = 160/439 (36%), Gaps = 83/439 (18%)
Query: 234 TSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESV-RLPMLTVLQLH 292
T+ + + + S + + L + S++ V L LT +
Sbjct: 21 TALAEKMKTVLGKTNVTDTVSQTD----LDQVTTLQADRLGIKSIDGVEYLNNLTQINFS 76
Query: 293 SCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMM 352
+ + +T + + + L + ++N N + ++ L L N+ L L
Sbjct: 77 NNQ-LTDIT--PLKNLTKLVDILMNN-NQIADIT-PLANLTNLT--------GLTLFNNQ 123
Query: 353 LSSI-MVSNCAALHRINITSNSLQKLS-LQKQENLTSLALQCQCLQEVDLTDCESLTNSV 410
++ I + N L+R+ ++SN++ +S L +L L+ Q +TD + L N
Sbjct: 124 ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ------VTDLKPLAN-- 175
Query: 411 CEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS-TSLVSLSLVGCRAITALE--LKCPILEK 467
L+ L + + + + T+L SL + I+ + L++
Sbjct: 176 ---------LTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ-ISDITPLGILTNLDE 225
Query: 468 VCLDGCDHIESASFVP--VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINC 525
+ L+G ++ + L L+L ++S + L
Sbjct: 226 LSLNGN-QLKDIGTLASLTNLTDLDLANN-QIS--NLAPLS-----------------GL 264
Query: 526 PLLTSLDASFCSQLKD-DCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDL 584
LT L Q+ + L+ + +L L Q + + + + +L+NLT L L
Sbjct: 265 TKLTELKLGAN-QISNISPLA----GLTALTNLELNENQ-L--EDISPISNLKNLTYLTL 316
Query: 585 SYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSA 644
+ ++++ P S +L+ L + N + + +L + L + + S
Sbjct: 317 YFNNISDISP-VSSLTKLQRL------FFYNNKVSDVSSLANLTNINWLSAGHNQI--SD 367
Query: 645 IEELLAYCTHLTHVSLNGC 663
+ LA T +T + LN
Sbjct: 368 LTP-LANLTRITQLGLNDQ 385
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 56.1 bits (136), Expect = 3e-08
Identities = 68/489 (13%), Positives = 172/489 (35%), Gaps = 83/489 (16%)
Query: 120 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEI-PINH-DQLRRLE 177
+ L LG+ + D + D + +L + G++ I + + + L ++
Sbjct: 21 TALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADR----LGIKSIDGVEYLNNLTQIN 74
Query: 178 ITKCRVMRVSI--RCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAA 233
+ ++ ++ +L + + + +A + N L L + + +++D
Sbjct: 75 FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNN-QITDID---PL 130
Query: 234 TSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHS 293
+ L L++S+ + +L +L+ L+ L L L + S
Sbjct: 131 KNLTNLNRLELSSNTISDISALS----GLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186
Query: 294 CEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMML 353
+ ++ ++ ++ LE L N N ++ ++ L L N+ +L+L L
Sbjct: 187 NK-VSD--ISVLAKLTNLESLIATN-NQISDIT-PLGILTNLD--------ELSLNGNQL 233
Query: 354 SSI-MVSNCAALHRINITSNSLQKLS-LQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 411
I +++ L +++ +N + L+ L LT L L + +++ LT
Sbjct: 234 KDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQIS--NISPLAGLTA--- 288
Query: 412 EVFSDGGGCPMLKSLVLDNC--EGLTVVRFCSTSLVSLSLVGCR--AITALELKCPILEK 467
L +L L+ E ++ + +L L+L I+ + L++
Sbjct: 289 -----------LTNLELNENQLEDISPISNL-KNLTYLTLYFNNISDISPVS-SLTKLQR 335
Query: 468 VCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVL-ELKGCGVLSDAYINCP 526
+ + S +L ++ L + L L ++ +N
Sbjct: 336 LFFYNN-KVSDVS---------SLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385
Query: 527 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY 586
T+ ++ + + + ++ ++ I P ++ + T D+++
Sbjct: 386 AWTNAPVNYKANVS------------IPNTVKNVTGALIAPA---TISDGGSYTEPDITW 430
Query: 587 TFLTNLEPV 595
+ V
Sbjct: 431 NLPSYTNEV 439
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 8e-06
Identities = 48/255 (18%), Positives = 93/255 (36%), Gaps = 34/255 (13%)
Query: 554 IESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYL 613
+ +L DG+ L NLT ++ S LT++ P ++ +L + + +
Sbjct: 48 VTTLQADRLGIKSIDGV---EYLNNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQ-- 101
Query: 614 TNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGA 673
+ L +L L L L + + I+ L T+L + L+ + D++
Sbjct: 102 -IADITPL---ANLTNLTGLTLFNNQI--TDIDP-LKNLTNLNRLELSSN-TISDIS-AL 152
Query: 674 SGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLS 733
SG + S N + + N L L + + + I A+ +L
Sbjct: 153 SGLTSLQQLSFGN--------QVTDLKPLAN--LTTLERLDISSNKVSDISVLAKLTNLE 202
Query: 734 SLNLSLSANLKEVDV--ACFNLCFLNLSNCC--SLETLKLDCPKLTSLFLQSCNIDEEGV 789
SL + + + ++ NL L+L+ + TL LT L L + I
Sbjct: 203 SLIAT-NNQISDITPLGILTNLDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQISN--- 257
Query: 790 ESAITQCGMLETLDV 804
+ ++ L L +
Sbjct: 258 LAPLSGLTKLTELKL 272
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 94/506 (18%), Positives = 156/506 (30%), Gaps = 153/506 (30%)
Query: 311 LEVLELDNCNLLTSVSL-ELPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRIN 368
L N+ +VS +L ++ ++ + SI V L +IN
Sbjct: 26 KMKTVLGKTNVTDTVSQTDLDQVTTLQADRLG-----------IKSIDGVEYLNNLTQIN 74
Query: 369 ITSNSLQKLS-LQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLV 427
++N L ++ L+ L + + + D+T +LTN L L
Sbjct: 75 FSNNQLTDITPLKNLTKLVDILMNNNQIA--DITPLANLTN--------------LTGLT 118
Query: 428 LDNCEGLTVVRFCS--TSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVA 485
L N + +T + T+L L L I+ + L G +
Sbjct: 119 LFNNQ-ITDIDPLKNLTNLNRLELSSNT-ISDIS---------ALSGL----------TS 157
Query: 486 LQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD-DCL 544
LQ L+ G ++ L N L LD S ++ D L
Sbjct: 158 LQQLSFGNQV----TDLKPLA-----------------NLTTLERLDISSN-KVSDISVL 195
Query: 545 SATTTSCPLIESLILMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQL 602
+ +ESLI + Q I P L L NL L L+ L ++ S L
Sbjct: 196 A----KLTNLESLIATNNQISDITP-----LGILTNLDELSLNGNQLKDIGT-LASLTNL 245
Query: 603 KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662
L L N + +L L L EL L + S I L A T LT++ LN
Sbjct: 246 TDL------DLANNQISNLAPLSGLTKLTELKLGANQI--SNISPL-AGLTALTNLELNE 296
Query: 663 CGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVF 722
+ D++ P + + L L NI
Sbjct: 297 N-QLEDIS-------PISN----------------------LKNLTYLTLYFN-NISD-- 323
Query: 723 IPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSC 782
I P + L L + + +V +L+N ++ L +++ L
Sbjct: 324 ISPVSSLTKLQRLFFY-NNKVSDVS---------SLANLTNINWLSAGHNQISDL----- 368
Query: 783 NIDEEGVESAITQCGMLETLDVRFCP 808
+ + + L +
Sbjct: 369 --------TPLANLTRITQLGLNDQA 386
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 45.7 bits (109), Expect = 5e-05
Identities = 42/255 (16%), Positives = 78/255 (30%), Gaps = 55/255 (21%)
Query: 554 IESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYL 613
+ S + I + +++ +L L T +T+ Q+ L+
Sbjct: 3 LGSATITQDTPI--NQIFTDTALAEKMKTVLGKTNVTDTVS-QTDLDQVTTLQADRLGI- 58
Query: 614 TNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGA 673
S++ + L L +++ S L + I L T L + +N
Sbjct: 59 --KSIDGV---EYLNNLTQINFSNNQL--TDITP-LKNLTKLVDILMNNN---------- 100
Query: 674 SGCQPFESPSVYNSCGIFPHENIHESIDQPN-RLLQNLNCVGCPNIRKVFIPPQARCFHL 732
I + N L L I I P +L
Sbjct: 101 ---------------------QIADITPLANLTNLTGLTLFNN-QITD--IDPLKNLTNL 136
Query: 733 SSLNLSLSANLKEVDV--ACFNLCFLNLSNC-CSLETLKLDCPKLTSLFLQSCNIDEEGV 789
+ L LS S + ++ +L L+ N L+ L + L L + S + +
Sbjct: 137 NRLELS-SNTISDISALSGLTSLQQLSFGNQVTDLKPLA-NLTTLERLDISSNKVSD--- 191
Query: 790 ESAITQCGMLETLDV 804
S + + LE+L
Sbjct: 192 ISVLAKLTNLESLIA 206
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 60.2 bits (146), Expect = 1e-10
Identities = 16/117 (13%), Positives = 35/117 (29%), Gaps = 9/117 (7%)
Query: 208 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSC---AN 264
L+ + +D + +E + + C + D L ++ +
Sbjct: 58 LDKYKIQAIDATDS-CIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKS 115
Query: 265 LRILNSSYCPNISLESV----RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELD 317
+ + C N++ + + L L L G+ + L LEL
Sbjct: 116 MLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELK 172
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-09
Identities = 25/146 (17%), Positives = 50/146 (34%), Gaps = 30/146 (20%)
Query: 497 LSTLGIEALHMVVLELKGCGVLSDAY---INCPLLTSLDASFCSQLKDDCL---SATTTS 550
L T ++ + ++ ++S + + + C ++D CL S
Sbjct: 53 LPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENL 112
Query: 551 CPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQAC 610
+ + ++SC ++ G+ +L +NL L LS
Sbjct: 113 QKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSD-----------------------L 149
Query: 611 KYLTNTSLESLYKKGSLPALQ-ELDL 635
+ K SLP+L+ +LDL
Sbjct: 150 PGVKEKEKIVQAFKTSLPSLELKLDL 175
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 2e-09
Identities = 12/98 (12%), Positives = 36/98 (36%), Gaps = 8/98 (8%)
Query: 187 SIRCPQLEHLSLKRSNM----AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP---QL 239
+ +++ + S + + + + + CH + D + + +
Sbjct: 57 PLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116
Query: 240 ESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNIS 277
+++ +C V+D+ + + NL+ L S P +
Sbjct: 117 LEMEIISCGNVTDKGIIALH-HFRNLKYLFLSDLPGVK 153
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 54.5 bits (131), Expect = 1e-08
Identities = 13/125 (10%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 225 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR-- 282
+ +++++D ++ C+ + + + C I +
Sbjct: 49 DYNHLPTGPLDKYKIQAIDATDS-CIMSIGF-DHMEGLQYVEKIRLCKCHYIEDGCLERL 106
Query: 283 ------LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIR 336
+ +++ SC +T + A+ H L+ L L + + + +
Sbjct: 107 SQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKT-S 165
Query: 337 LVHCR 341
L
Sbjct: 166 LPSLE 170
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 1e-07
Identities = 20/125 (16%), Positives = 50/125 (40%), Gaps = 14/125 (11%)
Query: 145 DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA 204
D +++++ D+ + + + + ++ + +C +E L+R ++
Sbjct: 59 DKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLC---------KCHYIEDGCLER--LS 107
Query: 205 QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL--SC 262
Q + ++I SC ++D I A L+ L +S+ V ++ A S
Sbjct: 108 QLENLQKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSL 166
Query: 263 ANLRI 267
+L +
Sbjct: 167 PSLEL 171
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 1e-07
Identities = 13/94 (13%), Positives = 40/94 (42%), Gaps = 2/94 (2%)
Query: 578 NLTMLDLSYTFLTNLE-PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP-ALQELDL 635
+ +D + + + ++ E ++ ++L C Y+ + LE L + +L ++ E+++
Sbjct: 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEI 121
Query: 636 SYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDL 669
L + +L ++ L+ + +
Sbjct: 122 ISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEK 155
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 19/144 (13%), Positives = 45/144 (31%), Gaps = 18/144 (12%)
Query: 686 NSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKE 745
N + +Q ++ I + ++ + L ++
Sbjct: 42 GQQRWQKDYNHLPTGPLDKYKIQAIDATDS-CIMSIGFDHMEGLQYVEKIRLCKCHYIE- 99
Query: 746 VDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSC-NIDEEGVESAITQCGMLETLDV 804
+ C LS +L + + + SC N+ ++G+ A+ L+ L +
Sbjct: 100 ------DGCLERLSQLENL------QKSMLEMEIISCGNVTDKGII-ALHHFRNLKYLFL 146
Query: 805 RFCPKICSTSMG--RLRAACPSLK 826
P + + + PSL+
Sbjct: 147 SDLPGVKEKEKIVQAFKTSLPSLE 170
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 1e-05
Identities = 19/163 (11%), Positives = 42/163 (25%), Gaps = 55/163 (33%)
Query: 384 NLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTS 443
+L + L +Q +D TD + + + G ++ + L C +
Sbjct: 52 HLPTGPLDKYKIQAIDATDS-CIMSIGFDHME---GLQYVEKIRLCKCHYIE-------- 99
Query: 444 LVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIE 503
+ + + ++ + + C ++ GI
Sbjct: 100 --------------------------DGCLERLSQLENLQKSMLEMEIISCGNVTDKGII 133
Query: 504 ALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSA 546
ALH + L L S +K+
Sbjct: 134 ALH-----------------HFRNLKYLFLSDLPGVKEKEKIV 159
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 50/309 (16%), Positives = 94/309 (30%), Gaps = 70/309 (22%)
Query: 117 KAVSLLRNLEALTLGRGQLGD----AFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQ 172
+ +++ + L +G +A L+ +D G EIP
Sbjct: 26 AVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85
Query: 173 LRRLEITKCRVMRVSIRCPQLEHLSLKRSN--------MAQAVLNCPLLHLLDIASCH-- 222
L ++ ++CP+L + L + + + L L + +
Sbjct: 86 L----------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG 135
Query: 223 ---------KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIAL---SCANLRILNS 270
L + A+ A + P L S+ + + S++E A S L +
Sbjct: 136 PQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWAKTFQSHRLLHTVKM 194
Query: 271 SYCPNISLESVRL---------PMLTVLQLHSCEGITSASMAAIS----HSYMLEVLELD 317
I E + L VL L T +A++ L L L+
Sbjct: 195 VQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLN 252
Query: 318 NCNL----LTSVSLELPRLQNIRLVHCRKFADLNLR--------AMMLSSIMVSNCAALH 365
+C L +V +L+NI L L L+ L +++ L
Sbjct: 253 DCLLSARGAAAVVDAFSKLENIGLQT------LRLQYNEIELDAVRTLKTVIDEKMPDLL 306
Query: 366 RINITSNSL 374
+ + N
Sbjct: 307 FLELNGNRF 315
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 2e-08
Identities = 50/318 (15%), Positives = 92/318 (28%), Gaps = 75/318 (23%)
Query: 528 LTSLDASFCSQLKDDC--LSATTTSCPLIESLILMSCQSIGPDGLYS----LRSLQNLTM 581
+ + +D + A ++ ++L IG + + S ++L +
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLEI 64
Query: 582 LDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY---G 638
+ S F ++ L+L + L C L + LS G
Sbjct: 65 AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLH-----------------TVRLSDNAFG 107
Query: 639 TLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHE 698
Q + + L+ T L H+ L+ G G E
Sbjct: 108 PTAQEPLIDFLSKHTPLEHLYLHNNG------LGPQAGAKI---------ARALQELAVN 152
Query: 699 SIDQPNRLLQNLNC-------VGCPNIRKVFIPPQARCFHLSSLNLS--------LSANL 743
+ L+++ C K F L ++ + + L
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTF----QSHRLLHTVKMVQNGIRPEGIEHLL 208
Query: 744 KEVDVACFNLCFLNLSNCC-------SL-ETLKLDCPKLTSLFLQSCNIDEEGVE---SA 792
E C L L+L + +L LK P L L L C + G A
Sbjct: 209 LEGLAYCQELKVLDLQDNTFTHLGSSALAIALK-SWPNLRELGLNDCLLSARGAAAVVDA 267
Query: 793 ITQCGM--LETLDVRFCP 808
++ L+TL +++
Sbjct: 268 FSKLENIGLQTLRLQYNE 285
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 52.0 bits (125), Expect = 4e-07
Identities = 53/377 (14%), Positives = 106/377 (28%), Gaps = 93/377 (24%)
Query: 443 SLVSLSL-------VGCRAITALELKCPILEKVCL-------DGCDHIESASFVPVALQS 488
S+ SL +++ A+ L+ ++++ L + + L+
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 489 LNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDC---LS 545
I + + +L A + CP L ++ S L
Sbjct: 65 AEFS--------DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLI 115
Query: 546 ATTTSCPLIESLILMSCQSIGPDGLYSL-RSLQNLTMLDLSYTFLTNLEPVFESCLQLKV 604
+ +E L L + +GP + R+LQ L + + ++ L+
Sbjct: 116 DFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKA-----------KNAPPLRS 163
Query: 605 LKLQACKYLTNTSLESLYKK-GSLPALQELDLSYGTL----CQSAIEELLAYCTHLTHVS 659
+ + L N S++ K S L + + + + + E LAYC L +
Sbjct: 164 IICGRNR-LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLD 222
Query: 660 LNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLN-------C 712
L + G + ++ L+ L
Sbjct: 223 LQDN------TFTHLGSS-----------------ALAIALKS-WPNLRELGLNDCLLSA 258
Query: 713 VGCPNIRKVFIPPQARCFHLSSLNLSLSAN-LKEVDVACFNLCFLNLSNCCSLETLKLDC 771
G + F ++ ++ L L N ++ V +
Sbjct: 259 RGAAAVVDAF----SKLENIGLQTLRLQYNEIELDAVRTL------------KTVIDEKM 302
Query: 772 PKLTSLFLQSCNIDEEG 788
P L L L EE
Sbjct: 303 PDLLFLELNGNRFSEED 319
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 57/304 (18%), Positives = 109/304 (35%), Gaps = 53/304 (17%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH----DQLRRLE 177
+LE L L + A + L++L + N ++ IP+ L +L+
Sbjct: 55 FPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR----SNRLKLIPLGVFTGLSNLTKLD 110
Query: 178 ITKCRVMRVSIRC----PQLEHLSLKR----SNMAQAVLNCPLLHLLDIASCH--KLSDA 227
I++ +++ + L+ L + +A L L + C+ +
Sbjct: 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE 170
Query: 228 AIRLAATSCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLES---VR 282
A+ L L + + + + D S + L++L S+ P + + +
Sbjct: 171 ALS----HLHGLIVLRLRHLNINAIRDYSFK----RLYRLKVLEISHWPYLDTMTPNCLY 222
Query: 283 LPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS----LELPRLQNIRLV 338
LT L + C +T+ A+ H L L L N ++++ EL RLQ I+LV
Sbjct: 223 GLNLTSLSITHCN-LTAVPYLAVRHLVYLRFLNLSY-NPISTIEGSMLHELLRLQEIQLV 280
Query: 339 HCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLA--------L 390
+ L + L +N++ N L L ++ +L L
Sbjct: 281 GGQ------LAV--VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
Query: 391 QCQC 394
C C
Sbjct: 333 ACDC 336
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 58/322 (18%), Positives = 124/322 (38%), Gaps = 49/322 (15%)
Query: 364 LHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPML 423
+++ N ++ L+ + + L +E++L + ++ F+ L
Sbjct: 34 TRLLDLGKNRIKTLNQDEFASFPHL-------EELELNENI-VSAVEPGAFN---NLFNL 82
Query: 424 KSLVLDNCEGLTVVR---FCS-TSLVSLSLVGCRAITALELKC----PILEKVCLDGCD- 474
++L L + L ++ F ++L L + + I L L+ + + D
Sbjct: 83 RTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENK-IVILLDYMFQDLYNLKSLEVGDNDL 140
Query: 475 -HIESASFVP-VALQSLNLGICPKLSTLGIEALH----MVVLELKGC---GVLSDAYINC 525
+I +F +L+ L L C L+++ EAL ++VL L+ + ++
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ--SIGPDGLYSLRSLQNLTMLD 583
L L+ S L D ++ + SL + C ++ ++R L L L+
Sbjct: 200 YRLKVLEISHWPYL--DTMTPNCLYGLNLTSLSITHCNLTAVPYL---AVRHLVYLRFLN 254
Query: 584 LSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKK--GSLPALQELDLSYGTL 640
LSY ++ +E + L+L+ + L L + L L+ L++S L
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEI------QLVGGQLAVVEPYAFRGLNYLRVLNVSGNQL 308
Query: 641 CQSAIEELLAYCTHLTHVSLNG 662
+ E + +L + L+
Sbjct: 309 -TTLEESVFHSVGNLETLILDS 329
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 55.0 bits (131), Expect = 4e-08
Identities = 47/232 (20%), Positives = 84/232 (36%), Gaps = 25/232 (10%)
Query: 71 HEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTL 130
FW ++FE ++IS + D+ +N + L + NL++L +
Sbjct: 142 EGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRP-NLKSLEI 200
Query: 131 GRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRC 190
G L D+ + S L +L +G + + R L R
Sbjct: 201 ISGGLPDSVVEDILG-SDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD--------RF 251
Query: 191 PQLEHLSLKRSNM----AQAVLNCPL---LHLLDIASCHKLSDAAIRLAATSCP---QLE 240
P L+ L + + + L + L +DI S L+D RL L+
Sbjct: 252 PNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDI-SAGVLTDEGARLLLDHVDKIKHLK 310
Query: 241 SLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLH 292
++M +SDE +E+ S ++ S + + PM+T L+ H
Sbjct: 311 FINMKYNY-LSDEMKKELQKSLPMKIDVSDSQEYD---DDYSYPMITELEHH 358
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 52.3 bits (124), Expect = 4e-07
Identities = 40/223 (17%), Positives = 71/223 (31%), Gaps = 24/223 (10%)
Query: 459 ELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV- 517
+ K P L+++ + + N L + E+
Sbjct: 103 DKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQV 162
Query: 518 -LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS- 575
LS PLL +L + L P ++SL ++S + + +
Sbjct: 163 DLSPVLDAMPLLNNLKIKGTNNLSIGKKP-----RPNLKSLEIISGG-LPDSVVEDILGS 216
Query: 576 -LQNLTMLDLSY--------TFLTNLEPVF--ESCLQLKVLKLQACKYLTNTSLESLYKK 624
L NL L L + P+F + LK L + + N +E +
Sbjct: 217 DLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLES 275
Query: 625 GSLPALQELDLSYGTLCQSAIEELLAYC---THLTHVSLNGCG 664
LP L+ +D+S G L LL + HL +++
Sbjct: 276 DILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.0 bits (113), Expect = 7e-06
Identities = 30/185 (16%), Positives = 59/185 (31%), Gaps = 26/185 (14%)
Query: 168 INHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR-SNMAQAVLNCPLLHLLDIASCHKLSD 226
I+ ++ I + + V P L +L +K +N++ P L L+I S
Sbjct: 149 IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDS 208
Query: 227 AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPML 286
+ + P LE L + E ++ + R P L
Sbjct: 209 VVEDILGSDLPNLEKLVLYVGV--------EDYGFDGDMNVFRP------LFSKDRFPNL 254
Query: 287 TVLQLHSCEGITSASMAAISHSYM---LEVLELDNCNL-------LTSVSLELPRLQNIR 336
L + E + + S + LE +++ L L ++ L+ I
Sbjct: 255 KWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313
Query: 337 LVHCR 341
+ +
Sbjct: 314 MKYNY 318
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 43.4 bits (101), Expect = 2e-04
Identities = 29/208 (13%), Positives = 67/208 (32%), Gaps = 33/208 (15%)
Query: 390 LQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSL 449
+ ++D + E ++ P+L +L + L++ + +L SL +
Sbjct: 141 FEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEI 200
Query: 450 ----VGCRAITAL-ELKCPILEKVCLD-GCDHIESASFVPVALQSLNLGICPKLSTLGIE 503
+ + + P LEK+ L G + + V + P L LG
Sbjct: 201 ISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLG-- 258
Query: 504 ALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ 563
+ + + ++ P L ++D S L D+
Sbjct: 259 -IVDAEEQNVVVEMFLES-DILPQLETMDIS-AGVLTDEGARLLLDHVD----------- 304
Query: 564 SIGPDGLYSLRSLQNLTMLDLSYTFLTN 591
+++L +++ Y +L++
Sbjct: 305 -----------KIKHLKFINMKYNYLSD 321
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 42.6 bits (99), Expect = 4e-04
Identities = 30/199 (15%), Positives = 55/199 (27%), Gaps = 37/199 (18%)
Query: 470 LDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLT 529
LD + + S+ P L +L I + + V + P L
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGL-----PDSVVEDILGSDLPNLE 222
Query: 530 SLD-------ASFCSQLKDDCLSATTTSCPLIESLILMSCQSI--GPDGLYSLRSLQNLT 580
L F + + P ++ L ++ + + L L
Sbjct: 223 KLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLE 282
Query: 581 MLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 640
+D+S LT+ E L L + + L+ +++ Y L
Sbjct: 283 TMDISAGVLTD-----EGARLL----LDHVDKIKH--------------LKFINMKYNYL 319
Query: 641 CQSAIEELLAYCTHLTHVS 659
+EL VS
Sbjct: 320 SDEMKKELQKSLPMKIDVS 338
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 9e-08
Identities = 32/93 (34%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 570 LYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPA 629
L L L +T LDLS+ L L P + L+VL ++ +LE++ +LP
Sbjct: 456 LCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVL------QASDNALENVDGVANLPR 509
Query: 630 LQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662
LQEL L L QSA + L C L ++L G
Sbjct: 510 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 42.8 bits (100), Expect = 4e-04
Identities = 43/263 (16%), Positives = 78/263 (29%), Gaps = 45/263 (17%)
Query: 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632
+ + L +LS T L+ ESC +L+ L+ + L T + + L
Sbjct: 345 SATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLL-TIILLMRALDPLLYE-- 401
Query: 633 LDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFP 692
+E L Y + L V + DL + +
Sbjct: 402 -------------KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448
Query: 693 HENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNL-SLSANLKEVDVACF 751
+ L+ L LS L +L L
Sbjct: 449 AHKDLTVLCH----LEQL--------------LLVTHLDLSHNRLRALPPALAA----LR 486
Query: 752 NLCFLNLSNC--CSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPK 809
L L S+ +++ + + P+L L L + + + + C L L+++
Sbjct: 487 CLEVLQASDNALENVDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS- 544
Query: 810 ICSTSM--GRLRAACPSLKRIFS 830
+C RL PS+ I +
Sbjct: 545 LCQEEGIQERLAEMLPSVSSILT 567
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 51/312 (16%), Positives = 87/312 (27%), Gaps = 61/312 (19%)
Query: 391 QCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLV 450
+ + +L + + R +++ +
Sbjct: 10 HSSGRENLYFQGSTALR----PYHDVLSQWQRHYNADRNRWHSAW--RQANSNNPQIETR 63
Query: 451 GCRAITAL-----ELKCPILEKVCLDGCDHIESASFVP------VALQSLNLGICPKLST 499
RA+ A + P + L + P LQ + + L
Sbjct: 64 TGRALKATADLLEDATQPGRVALELRSV-PLPQ---FPDQAFRLSHLQHMTIDAA-GLME 118
Query: 500 L--GIEAL-HMVVLELKGCG--VLSDAYINCPLLTSLDASFCSQLK-------DDCLSAT 547
L ++ + L L L + + L L C +L S
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 548 TTSCPLIESLILMSCQ------SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601
++SL L SI +LQNL L + + L+ L P +
Sbjct: 179 HQGLVNLQSLRLEWTGIRSLPASIA--------NLQNLKSLKIRNSPLSALGPAIHHLPK 230
Query: 602 LKVLKLQACKYLTNTSL-ESLYKKGSLPALQELDLSYGTLCQSAIEEL---LAYCTHLTH 657
L+ L L+ C L + G L+ L L S + L + T L
Sbjct: 231 LEELDLRGCTAL--RNYPPIF---GGRAPLKRLILKDC----SNLLTLPLDIHRLTQLEK 281
Query: 658 VSLNGCGNMHDL 669
+ L GC N+ L
Sbjct: 282 LDLRGCVNLSRL 293
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 7e-06
Identities = 47/321 (14%), Positives = 90/321 (28%), Gaps = 58/321 (18%)
Query: 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESL----ILMSCQSIGPDGLY 571
G + + +L + L+ P + L + +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALR-----------PYHDVLSQWQRHYNADRNRWHSAW 50
Query: 572 SLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK-GSLPAL 630
+ N + + L + E Q + L L + L + L L
Sbjct: 51 RQANSNNPQIETRTGRALKATADLLEDATQPGRVAL----ELRSVPLPQFPDQAFRLSHL 106
Query: 631 QELDLSYGTLCQSAIEEL---LAYCTHLTHVSLNGC---------GNMHDLNW-GASGCQ 677
Q + + + + EL + L ++L +++ L C
Sbjct: 107 QHMTIDA-----AGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACP 161
Query: 678 PFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSL-N 736
P ++ L NL + +P +L +L +
Sbjct: 162 ELTE---------LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASI--ANLQNLKS 210
Query: 737 LSLSAN-LKEVDVA---CFNLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGV 789
L + + L + A L L+L C +L L L L+ C+ +
Sbjct: 211 LKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-L 269
Query: 790 ESAITQCGMLETLDVRFCPKI 810
I + LE LD+R C +
Sbjct: 270 PLDIHRLTQLEKLDLRGCVNL 290
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 9e-06
Identities = 56/345 (16%), Positives = 101/345 (29%), Gaps = 78/345 (22%)
Query: 440 CSTSLVSLSLVGCRAITALE---LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPK 496
S+ +L G A+ + + + N P+
Sbjct: 10 HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWR-------QANSNN---PQ 59
Query: 497 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIES 556
+ T AL L+ +L+ L ++
Sbjct: 60 IETRTGRALKATADLLEDATQPG--------RVALELRSV-PLP--QFPDQAFRLSHLQH 108
Query: 557 LILMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLT 614
+ + + + PD +++ L L L+ L L S +L+ L ++AC LT
Sbjct: 109 MTIDAAGLMEL-PD---TMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164
Query: 615 N-----TSLESLYKKGSLPALQELDLSYGTLCQSAIEEL---LAYCTHLTHVSLNGCGNM 666
S ++ + L LQ L L + + I L +A +L + +
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEW-----TGIRSLPASIANLQNLKSLKIRNS--- 216
Query: 667 HDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQ 726
P + +I +L + L+ GC +R PP
Sbjct: 217 -------------------------PLSALGPAIHHLPKL-EELDLRGCTALRN--YPPI 248
Query: 727 -ARCFHLSSLNLSLSANLKEVDVA---CFNLCFLNLSNCCSLETL 767
L L L +NL + + L L+L C +L L
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 63/356 (17%), Positives = 107/356 (30%), Gaps = 54/356 (15%)
Query: 299 SASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADL-NLRAMMLSSIM 357
+S HS E L L L + Q ++ I
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE 61
Query: 358 VSNCAALHRI-----NITSNSLQKLSLQKQENLTSL---ALQCQCLQEVDLTDC--ESLT 407
AL + T L L+ L A + LQ + + L
Sbjct: 62 TRTGRALKATADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELP 120
Query: 408 NSVCEVFSDGGGCPMLKSLVLDNCEGLTVV--RFCS-TSLVSLSLVGCRAITALELKCP- 463
+++ L++L L L + S L LS+ C +T L P
Sbjct: 121 DTM-------QQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTEL----PE 168
Query: 464 -ILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTL--GIEAL-HMVVLELKGCG--V 517
+ + + LQSL L + +L I L ++ L+++
Sbjct: 169 PLASTDASGEHQGLVN-------LQSLRLE-WTGIRSLPASIANLQNLKSLKIRNSPLSA 220
Query: 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIG--PDGLYSLRS 575
L A + P L LD C+ L++ ++ LIL C ++ P +
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLPL---DIHR 275
Query: 576 LQNLTMLDLSY-TFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPAL 630
L L LDL L+ L + ++ + +L + + PA
Sbjct: 276 LTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV--PPHLQAQLDQHR--PVARPAE 327
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 61/374 (16%), Positives = 110/374 (29%), Gaps = 87/374 (23%)
Query: 239 LESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLH--SCEG 296
E+L + +LR + + + N + R Q+ +
Sbjct: 14 RENLYFQGST-----ALRPYHDVLSQWQRH-YNADRNRWHSAWRQANSNNPQIETRTGRA 67
Query: 297 ITSA-SMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSS 355
+ + + + LEL + L + RL +++ + + A L
Sbjct: 68 LKATADLLEDATQPGRVALELRSVP-LPQFPDQAFRLSHLQ--------HMTIDAAGLME 118
Query: 356 I--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV 413
+ + A L + + N L+ L S+A L+E+ + C LT + E
Sbjct: 119 LPDTMQQFAGLETLTLARNPLRALP-------ASIA-SLNRLRELSIRACPELT-ELPEP 169
Query: 414 FSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITAL-----ELKCPILEKV 468
+ + L +L SL L I +L L+
Sbjct: 170 LASTDASGEHQGL---------------VNLQSLRLEWTG-IRSLPASIANLQN------ 207
Query: 469 CLDGCDHIESASFVPVALQSLNLGICPKLSTL--GIEALH-MVVLELKGC---GVLSDAY 522
L+SL + LS L I L + L+L+GC +
Sbjct: 208 -----------------LKSLKIRNS-PLSALGPAIHHLPKLEELDLRGCTALRNYPPIF 249
Query: 523 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIG--PDGLYSLRSLQNLT 580
L L CS L L +E L L C ++ P + L
Sbjct: 250 GGRAPLKRLILKDCSNLLT--LPLDIHRLTQLEKLDLRGCVNLSRLPS---LIAQLPANC 304
Query: 581 MLDLSYTFLTNLEP 594
++ + L+
Sbjct: 305 IILVPPHLQAQLDQ 318
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 3e-07
Identities = 62/367 (16%), Positives = 126/367 (34%), Gaps = 63/367 (17%)
Query: 311 LEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINI 369
L ++ V+ E L++I L + ++SI + L +N+
Sbjct: 24 GIRAVLQKASVTDVVTQE--ELESIT--------KLVVAGEKVASIQGIEYLTNLEYLNL 73
Query: 370 TSNSLQKLS-LQKQENLTSLALQCQCLQEVD-LTDCESLT------NSVCEVFSDGGGCP 421
N + +S L LT+L + + ++ L + +L +++ S
Sbjct: 74 NGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNI-SDISPLANLT 132
Query: 422 MLKSLVLDNCEGLTVVRFCS--TSLVSLSLVGCR--AITALELKCPILEKVCLDGCDHIE 477
+ SL L L+ + S T L L++ + +T + L + L+ IE
Sbjct: 133 KMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIA-NLTDLYSLSLNYN-QIE 190
Query: 478 SASFVP--VALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASF 535
S + +L + +++ I + N L SL
Sbjct: 191 DISPLASLTSLHYFTAYVN-QIT--DITPVA-----------------NMTRLNSLKIGN 230
Query: 536 CSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPV 595
++ D + + + L + + Q + + + L L ML++ ++++
Sbjct: 231 N-KITD---LSPLANLSQLTWLEIGTNQISDINAV---KDLTKLKMLNVGSNQISDISV- 282
Query: 596 FESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHL 655
+ QL L L + L N +E + G L L L LS + + I LA + +
Sbjct: 283 LNNLSQLNSLFLNNNQ-LGNEDMEVI---GGLTNLTTLFLSQNHI--TDIRP-LASLSKM 335
Query: 656 THVSLNG 662
Sbjct: 336 DSADFAN 342
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 42/244 (17%), Positives = 80/244 (32%), Gaps = 67/244 (27%)
Query: 572 SLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQ 631
+ L NL L+L+ +T++ P + ++L L Y+ + + +L L+
Sbjct: 61 GIEYLTNLEYLNLNGNQITDISP-LSNLVKLTNL------YIGTNKITDISALQNLTNLR 113
Query: 632 ELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIF 691
EL L+ + S I L A T + ++L N+ DL
Sbjct: 114 ELYLNEDNI--SDISPL-ANLTKMYSLNLGANHNLSDL---------------------- 148
Query: 692 PHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACF 751
+ L L ++ + P A L SL+L+ ++++
Sbjct: 149 ------SPLSNMTGL-NYLTVTES-KVKD--VTPIANLTDLYSLSLN-YNQIEDIS---- 193
Query: 752 NLCFLNLSNCCSLETLKLD------------CPKLTSLFLQSCNIDEEGVESAITQCGML 799
L++ SL +L SL + + I + S + L
Sbjct: 194 -----PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITD---LSPLANLSQL 245
Query: 800 ETLD 803
L+
Sbjct: 246 TWLE 249
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 5e-05
Identities = 52/281 (18%), Positives = 111/281 (39%), Gaps = 36/281 (12%)
Query: 117 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPI--NHDQLR 174
+ + L NLE L L Q+ D L++ L +L + N + +I N LR
Sbjct: 60 QGIEYLTNLEYLNLNGNQITD--ISPLSNLVKLTNLYIGT----NKITDISALQNLTNLR 113
Query: 175 RLEITKCRVMRVS--IRCPQLEHLSL---KRSNMAQAVLNCPLLHLLDIASCHKLSDAAI 229
L + + + +S ++ L+L + + N L+ L + K+ D
Sbjct: 114 ELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTES-KVKDVT- 171
Query: 230 RLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR-LPMLTV 288
+ L SL ++ L S +L + + V + L
Sbjct: 172 --PIANLTDLYSLSLNYNQIEDISPLA----SLTSLHYFTAYVNQITDITPVANMTRLNS 225
Query: 289 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNL 348
L++ + + IT ++ +++ L LE+ N ++ ++ + L ++ LN+
Sbjct: 226 LKIGNNK-IT--DLSPLANLSQLTWLEIGT-NQISDIN-AVKDLTKLK--------MLNV 272
Query: 349 RAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSL 388
+ +S I +++N + L+ + + +N L ++ LT+L
Sbjct: 273 GSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNL 313
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 57/361 (15%), Positives = 108/361 (29%), Gaps = 78/361 (21%)
Query: 486 LQSLNLGICPKLSTLGIEAL-HMVVLELKGCGVLSDAYI-NCPLLTSLDASFCSQLKDDC 543
+L P L + L+ V +T L +
Sbjct: 2 AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61
Query: 544 LSATTTSCPLIESLILMSCQ--SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601
+ +E L L Q I P L +L LT L + +T++ ++
Sbjct: 62 IE----YLTNLEYLNLNGNQITDISP-----LSNLVKLTNLYIGTNKITDISA-LQNLTN 111
Query: 602 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLN 661
L+ L YL ++ + +L + L+L S + L + T L ++++
Sbjct: 112 LREL------YLNEDNISDISPLANLTKMYSLNLGANHN-LSDLSPL-SNMTGLNYLTVT 163
Query: 662 GC--------GNMHDLNW-GASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNC 712
N+ DL + Q + + + L +L+
Sbjct: 164 ESKVKDVTPIANLTDLYSLSLNYNQIEDISPLAS--------------------LTSLHY 203
Query: 713 VGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDV--ACFNLCFLNLS----------- 759
+ I P A L+SL + + + ++ L +L +
Sbjct: 204 FTAYVNQITDITPVANMTRLNSLKIG-NNKITDLSPLANLSQLTWLEIGTNQISDINAVK 262
Query: 760 NCCSLETLKLD------------CPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFC 807
+ L+ L + +L SLFL + + E +E I L TL +
Sbjct: 263 DLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDME-VIGGLTNLTTLFLSQN 321
Query: 808 P 808
Sbjct: 322 H 322
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 3e-07
Identities = 71/438 (16%), Positives = 129/438 (29%), Gaps = 61/438 (13%)
Query: 235 SCPQLESLDMSNC--SCVSDESLREIALSCANLRILNSSYCPNISLESV----RLPMLTV 288
+LE LD+S+ +S NL+ L+ S+ +L + L
Sbjct: 67 FNQELEYLDLSHNKLVKISCHPTV-------NLKHLDLSFNAFDALPICKEFGNMSQLKF 119
Query: 289 LQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNL 348
L L + + +S+ I+H + +VL + E LQ+ N
Sbjct: 120 LGLSTTH-LEKSSVLPIAHLNISKVLLVLGETYGEKEDPEG--LQDFNTESLHIVFPTNK 176
Query: 349 RAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 408
+ + V A L NI L L L + L + E+ N
Sbjct: 177 EFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL-QTNPKLSNLTLNNIETTWN 235
Query: 409 SVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKV 468
S + + + N + + F SL +A++ ++
Sbjct: 236 SFIRILQLVWHTT-VWYFSISNVKLQGQLDFRDFDYSGTSL---KALSIHQVV------- 284
Query: 469 CLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLL 528
I S + I+ + + S
Sbjct: 285 --------------SDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPS----KISPF 326
Query: 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ--SIGPDGLYSLRSLQNLTMLDLSY 586
LD S L D +E+LIL Q + +++L LD+S
Sbjct: 327 LHLDFSNN-LLTDTVFENCG-HLTELETLILQMNQLKEL-SKIAEMTTQMKSLQQLDISQ 383
Query: 587 TFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSA 644
++ E L L + + LT+T L P ++ LDL + +
Sbjct: 384 NSVSYDEKKGDCSWTKSLLSLNMSSNI-LTDTIFRCL-----PPRIKVLDLHSNKI--KS 435
Query: 645 IEELLAYCTHLTHVSLNG 662
I + + L +++
Sbjct: 436 IPKQVVKLEALQELNVAS 453
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 60/396 (15%), Positives = 133/396 (33%), Gaps = 43/396 (10%)
Query: 282 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE-LPRLQNIRLVHC 340
L L +L + I ++ + LE L+L + N L +S L+++ L
Sbjct: 43 SLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSH-NKLVKISCHPTVNLKHLDL--- 97
Query: 341 RKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQ-EVD 399
+ A+ + N + L + +++ L+K S+ +L + + +
Sbjct: 98 ---SFNAFDALPICKE-FGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGE 153
Query: 400 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE 459
D E L + E L + N E ++ ++ +L L + +
Sbjct: 154 KEDPEGLQDFNTE---------SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDN 204
Query: 460 LKCPILEKVC-LDGCDHIESASFVPVALQSLNLGICPKL-STLGIEALHMVVLELKGCGV 517
L + L + + + + + +L + + ++L+G
Sbjct: 205 KCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLD 264
Query: 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL---- 573
D + L +L Q+ D + + E M+ ++ G +
Sbjct: 265 FRDFDYSGTSLKALSIH---QVVSDVFGFPQSY--IYEIFSNMNIKNFTVSGTRMVHMLC 319
Query: 574 -RSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGS----L 627
+ LD S LT+ +L+ L LQ L+ L K +
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQ------MNQLKELSKIAEMTTQM 373
Query: 628 PALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
+LQ+LD+S ++ + ++ L ++++
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSN 409
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 8/93 (8%)
Query: 572 SLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPAL 630
+ SL L +L +S+ + L+ VF+ +L+ L L++ L + L
Sbjct: 40 DILSLSKLRILIISHNRIQYLDISVFKFNQELEYL------DLSHNKLVKI-SCHPTVNL 92
Query: 631 QELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
+ LDLS+ I + + L + L+
Sbjct: 93 KHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT 125
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 52.8 bits (126), Expect = 4e-07
Identities = 51/367 (13%), Positives = 99/367 (26%), Gaps = 74/367 (20%)
Query: 344 ADLNLRAMMLSSIM-VSNCAALHRINITSNSLQKLSLQKQ-ENLTSLALQCQCLQEVDLT 401
+ + + I A + N+ S+ Q + ++ + ++ +
Sbjct: 2 GETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIK--SVQ 59
Query: 402 DCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS-TSLVSLSLVGCRAITALEL 460
+ L N + L L+ + + + +L L L + I L
Sbjct: 60 GIQYLPN--------------VTKLFLNGNKLTDIKPLTNLKNLGWLFLDENK-IKDLS- 103
Query: 461 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD 520
L L+SL+L +S I L
Sbjct: 104 --------SLKDLKK----------LKSLSLEHN-GISD--INGLV-------------- 128
Query: 521 AYINCPLLTSLDASFCSQLKD-DCLSATTTSCPLIESLILMSCQ--SIGPDGLYSLRSLQ 577
+ P L SL ++ D LS +++L L Q I P L L
Sbjct: 129 ---HLPQLESLYLGNN-KITDITVLS----RLTKLDTLSLEDNQISDIVP-----LAGLT 175
Query: 578 NLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY 637
L L LS +++L L VL+L + + N + ++ D S
Sbjct: 176 KLQNLYLSKNHISDLRA-LAGLKNLDVLELFSQE-CLNKPINHQSNLVVPNTVKNTDGSL 233
Query: 638 GTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIH 697
T + + H+ + + + + +
Sbjct: 234 VTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVS 293
Query: 698 ESIDQPN 704
+D
Sbjct: 294 YDVDGTV 300
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 51.6 bits (123), Expect = 8e-07
Identities = 38/281 (13%), Positives = 75/281 (26%), Gaps = 97/281 (34%)
Query: 570 LYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPA 629
+ L ++ + + + + +++ + + L +L L + +L
Sbjct: 36 AVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKL------FLNGNKLTDIKPLTNLKN 88
Query: 630 LQELDLSYGTLCQSAIEEL--LAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNS 687
L L L + I++L L L +SL
Sbjct: 89 LGWLFLDE-----NKIKDLSSLKDLKKLKSLSLEHN------------------------ 119
Query: 688 CGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVD 747
I I L SL L + + ++
Sbjct: 120 -----------------------------GISD--INGLVHLPQLESLYLG-NNKITDIT 147
Query: 748 VACFNLCFLNLSNCCSLETLKLD------------CPKLTSLFLQSCNIDEEGVESAITQ 795
LS L+TL L+ KL +L+L +I + A+
Sbjct: 148 ---------VLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD---LRALAG 195
Query: 796 CGMLETLDVRFCPKICSTSMGRLR--AACPSLKRIFSSLTT 834
L+ L++ + + ++K SL T
Sbjct: 196 LKNLDVLELFSQE-CLNKPINHQSNLVVPNTVKNTDGSLVT 235
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 4e-06
Identities = 50/248 (20%), Positives = 89/248 (35%), Gaps = 44/248 (17%)
Query: 78 LNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGD 137
+ N I + + Q PN T++ + G L +K ++ L+NL L L ++ D
Sbjct: 48 IIANNSDIK--SVQGI-QYLPNVTKLFLNG---NKLTDIKPLTNLKNLGWLFLDENKIKD 101
Query: 138 AFFHALADCSMLKSLNVNDATLGNGVQEIP--INHDQLRRLEITKCRVMRVSI--RCPQL 193
+L D LKSL++ NG+ +I ++ QL L + ++ +++ R +L
Sbjct: 102 --LSSLKDLKKLKSLSLE----HNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKL 155
Query: 194 EHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE 253
+ LSL N + DI L +L++L +S
Sbjct: 156 DTLSL-EDN-----------QISDIVPLAGL------------TKLQNLYLSKNHI---S 188
Query: 254 SLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEV 313
LR +A NL +L ++ L V + + IS E
Sbjct: 189 DLRALA-GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEK 247
Query: 314 LELDNCNL 321
+
Sbjct: 248 PNVKWHLP 255
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 5e-07
Identities = 59/369 (15%), Positives = 111/369 (30%), Gaps = 44/369 (11%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC 181
LE L L L + L S L++L++N N VQE+ + + L
Sbjct: 57 FTKLELLNLSSNVLYE--TLDLESLSTLRTLDLN----NNYVQELLVGP-SIETLHAANN 109
Query: 182 RVMRVSIR-CPQLEHLSLKRSN----MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSC 236
+ RVS +++ L + + LD+ ++ A S
Sbjct: 110 NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASS 168
Query: 237 PQLESLDMSNCSCVSDESLREI--ALSCANLRILNSSYC--PNISLESVRLPMLTVLQLH 292
LE L++ + ++ + A L+ L+ S + E +T + L
Sbjct: 169 DTLEHLNLQYNF------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR 222
Query: 293 SCEGITSASMAAISHSYMLEVLELDN----CNLLTSVSLELPRLQNI-----------RL 337
+ + + A+ S LE +L C L + R+Q +
Sbjct: 223 NNK-LVLIE-KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNE 280
Query: 338 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQE 397
C + A + L + ++L + E L +E
Sbjct: 281 EECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQRE 340
Query: 398 VDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITA 457
+D E + +V +L V + L +A+
Sbjct: 341 IDALK-EQYRTVIDQVTL---RKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQ 396
Query: 458 LELKCPILE 466
+EL+ E
Sbjct: 397 IELQHATEE 405
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 7e-07
Identities = 46/422 (10%), Positives = 125/422 (29%), Gaps = 66/422 (15%)
Query: 254 SLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQLHSCEGITSASMAAISHSYM 310
++ EI + +I + + + L L ++ S A ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTK 59
Query: 311 LEVLELDNCNLLTSVS--LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRIN 368
LE+L L + N+L L L+ + L + + + ++ ++
Sbjct: 60 LELLNLSS-NVLYETLDLESLSTLRTLDLNNNY-----------VQEL--LVGPSIETLH 105
Query: 369 ITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVL 428
+N++ ++S + + ++ L + + D + ++ L L
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSR--------------VQYLDL 151
Query: 429 DNCEGLTVVRF-----CSTSLVSLSLVGCRAITAL--ELKCPILEKVCLDGCDHIESASF 481
E + V F S +L L+L I + ++ L+ + L +
Sbjct: 152 KLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAF--- 205
Query: 482 VPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD 541
+ QS ++ + + +V ++ A L D
Sbjct: 206 MGPEFQSA-----AGVTWISLRNNKLV--------LIEKALRFSQNLEHFDLRGN-GFHC 251
Query: 542 DCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE-PVFESCL 600
L + ++++ + + + +L P + +
Sbjct: 252 GTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTL---GHYGAYCCEDLPAPFADRLI 308
Query: 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL 660
LK + + + ++ + +E+D ++ I+++ +
Sbjct: 309 ALKRKEHALLSGQGSETERLECERENQARQREIDALKEQY-RTVIDQVTLRKQAKITLEQ 367
Query: 661 NG 662
Sbjct: 368 KK 369
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 26/189 (13%), Positives = 48/189 (25%), Gaps = 13/189 (6%)
Query: 576 LQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK-GSLPALQELD 634
L LDLS L + P F+S + + L N L + K L+ D
Sbjct: 190 FAKLKTLDLSSNKLAFMGPEFQSAAGVTWI------SLRNNKLVLIEKALRFSQNLEHFD 243
Query: 635 LSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHE 694
L + + + + V+ + N P C P
Sbjct: 244 LRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN-EEECTVPTLGHYGAYCCEDLPAP 302
Query: 695 NIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLS---LSANLKEVDVACF 751
I + L+ G + + + ++ + +V +
Sbjct: 303 FADRLIALKRKEHALLS--GQGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQ 360
Query: 752 NLCFLNLSN 760
L
Sbjct: 361 AKITLEQKK 369
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 67/495 (13%), Positives = 143/495 (28%), Gaps = 76/495 (15%)
Query: 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK 180
+ + L A +K L+++ GN + +I L
Sbjct: 8 NGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLS----GNPLSQIS--AADLAPF---- 57
Query: 181 CRVMRVSIRCPQLEHLSLKRSNM---AQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP 237
+LE L+L SN+ + + L LD+ + + + P
Sbjct: 58 ----------TKLELLNL-SSNVLYETLDLESLSTLRTLDLNNN-YVQELL------VGP 99
Query: 238 QLESLDMSNCSCVSDESLREI-ALSCANLRILNSSYCPNISLESV---RLPMLTVLQLHS 293
+E+L +N ++ + + + + L + + L L
Sbjct: 100 SIETLHAANN------NISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKL 153
Query: 294 CEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE--LPRLQNIRLVHCRKFADLNLRAM 351
E T + S LE L L N + V + +L+ + L +
Sbjct: 154 NEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNK---------- 202
Query: 352 MLSSI--MVSNCAALHRINITSNSLQKL--SLQKQENLTSLAL-----QCQCLQEVDLTD 402
L+ + + A + I++ +N L + +L+ +NL L C L++ +
Sbjct: 203 -LAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSK 260
Query: 403 CESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKC 462
+ + + L + C T+ + + L + AL+ K
Sbjct: 261 NQRVQTVAKQTVKK------LTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKE 314
Query: 463 PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHM----VVLELKGCGVL 518
L + +E + ++ + T+ + + LE K +
Sbjct: 315 HALLSGQGSETERLECERENQARQREIDALKE-QYRTVIDQVTLRKQAKITLEQKKKALD 373
Query: 519 SDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQN 578
LD + + L T ++ L + +
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNA 433
Query: 579 LTMLDLSYTFLTNLE 593
+ D+ T L
Sbjct: 434 IRDWDMYQHKETQLA 448
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 6e-07
Identities = 18/97 (18%), Positives = 40/97 (41%), Gaps = 6/97 (6%)
Query: 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632
+ N+ L ++ TN P L+ L++ +T+ + +L L +L
Sbjct: 62 IEYAHNIKDLTINNIHATNYNP-ISGLSNLERLRIMGKD-VTSDKIPNL---SGLTSLTL 116
Query: 633 LDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDL 669
LD+S+ S + + + + + L+ G + D+
Sbjct: 117 LDISHSAHDDSILTK-INTLPKVNSIDLSYNGAITDI 152
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 2e-06
Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 24/145 (16%)
Query: 524 NCPLLTSLDASFCSQLKD-DCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTML 582
+ L + + + +S +E L +M + D + +L L +LT+L
Sbjct: 64 YAHNIKDLTINNI-HATNYNPIS----GLSNLERLRIMGKD-VTSDKIPNLSGLTSLTLL 117
Query: 583 DLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641
D+S++ + + ++ + L +T+ + L +LP L+ L++ +
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD--IMPL---KTLPELKSLNIQF---D 169
Query: 642 Q----SAIEELLAYCTHLTHVSLNG 662
IE+ L +
Sbjct: 170 GVHDYRGIEDF----PKLNQLYAFS 190
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 2e-04
Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 21/160 (13%)
Query: 237 PQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVR-LPMLTVLQLHSCE 295
L + ++N + + N++ L + + + L L L++ +
Sbjct: 44 NSLTYITLANINVTDLTGIEY----AHNIKDLTINNIHATNYNPISGLSNLERLRIMGKD 99
Query: 296 GITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAM 351
+TS + +S L +L++ + + L LP++ +I L + D+
Sbjct: 100 -VTSDKIPNLSGLTSLTLLDISH-SAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--- 154
Query: 352 MLSSIMVSNCAALHRINITSNSLQKLS-LQKQENLTSLAL 390
+ L +NI + + ++ L L
Sbjct: 155 ------LKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYA 188
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 51.5 bits (123), Expect = 8e-07
Identities = 52/412 (12%), Positives = 117/412 (28%), Gaps = 89/412 (21%)
Query: 235 SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSC 294
Q ++ +S + ++ I + E + L ++ +
Sbjct: 2 GGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNS 61
Query: 295 EGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRKFADLNLRA 350
+ A + +E+L L++ + + +Q + +
Sbjct: 62 T-MRKLPAALLDSFRQVELLNLND-LQIEEIDTYAFAYAHTIQKLYMGFNA--------- 110
Query: 351 MMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT 407
+ + + N L + + N L L N L + +++ +L
Sbjct: 111 --IRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL-------TTLSMSNN-NLE 160
Query: 408 NSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCS-TSLVSLSLVGCRAITALELKCPILE 466
+ F L++L L + LT V SL ++ ++ L +E
Sbjct: 161 RIEDDTFQ---ATTSLQNLQLSSNR-LTHVDLSLIPSLFHANVSYNL-LSTLA-IPIAVE 214
Query: 467 KVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCP 526
++ ++ + + +L+ L ++ ++ +N P
Sbjct: 215 ELDASHN-----------SINVVRGPVNVELTILKLQHNNLTDT---------AWLLNYP 254
Query: 527 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSY 586
L +D S+ +E + +Q L L +S
Sbjct: 255 GLVEVDLSYNE----------------LEKI---------MYH--PFVKMQRLERLYISN 287
Query: 587 TFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK-GSLPALQELDLSY 637
L L + LKVL L L + + L+ L L +
Sbjct: 288 NRLVALNLYGQPIPTLKVLDLSHNH------LLHVERNQPQFDRLENLYLDH 333
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 43.0 bits (101), Expect = 4e-04
Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 31/304 (10%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINH-DQLRRLEITK 180
L L++ L + L++L ++ N + + ++ L ++
Sbjct: 146 TPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS----NRLTHVDLSLIPSLFHANVSY 201
Query: 181 CRVMRVSIRCPQLEHLSLKRSNMAQ-AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL 239
+ ++I +E L +++ L +L + + A + + P L
Sbjct: 202 NLLSTLAI-PIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTDTAWLL----NYPGL 256
Query: 240 ESLDMSNC--SCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCE 295
+D+S + L L S ++L +P L VL L
Sbjct: 257 VEVDLSYNELEKIMYHPFV----KMQRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNH 312
Query: 296 GITSASMAAISHSYMLEVLELDNCNLLTSVSLE-LPRLQNIRLVH------CRK--FADL 346
+ LE L LD+ N + ++ L L+N+ L H + F ++
Sbjct: 313 -LLHVE-RNQPQFDRLENLYLDH-NSIVTLKLSTHHTLKNLTLSHNDWDCNSLRALFRNV 369
Query: 347 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESL 406
A+ + L S + + + + ++ + +
Sbjct: 370 ARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQRAQGRCSATDT 429
Query: 407 TNSV 410
NSV
Sbjct: 430 INSV 433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 75/493 (15%), Positives = 149/493 (30%), Gaps = 84/493 (17%)
Query: 177 EITKCRVMRVSIRCPQLEHLSLKRSNMAQA----VLNCPLLHLLDIASCHKLSDAAIRLA 232
++ + L + ++ N+ + + A RL
Sbjct: 7 NVSNTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLR 66
Query: 233 ATSCPQLESLDMSNCS--------------CVSDESLREIALSCANLRILNSSYCPNISL 278
Q L+++N S SL E+ +L+ L +L
Sbjct: 67 DCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 126
Query: 279 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLV 338
+ P+L L + + + + + +S L+++++DN N L + P L+
Sbjct: 127 SDL-PPLLEYLGVSNNQ-LEKLP--ELQNSSFLKIIDVDN-NSLKKLPDLPPSLEF---- 177
Query: 339 HCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQE 397
+ L + + N L I +N +L L L+
Sbjct: 178 -------IAAGNNQLEELPELQNLPFLTAIYADNN-----------SLKKLPDLPLSLES 219
Query: 398 VDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITA 457
+ + L + P L ++ DN L + SL +L++ +T
Sbjct: 220 IVAGNNI-LEE-----LPELQNLPFLTTIYADNNL-LKTLPDLPPSLEALNVRDNY-LTD 271
Query: 458 LELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV 517
L L + + S +P L LN ++ +L + L +
Sbjct: 272 LPELPQSLTFLDVSEN-IFSGLSELPPNLYYLNASSN-EIRSLCDLPPSLEELNVSNNK- 328
Query: 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ-SIGPDGLYSLRSL 576
L + P L L ASF L + + + + L + PD S+ L
Sbjct: 329 LIELPALPPRLERLIASFN-HLAE--VPELPQNL---KQLHVEYNPLREFPDIPESVEDL 382
Query: 577 -------------QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYK 623
QNL L + L + ES ++ L++ + + +
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIPES---VEDLRMNSERVVDPYEFAHE-- 437
Query: 624 KGSLPALQELDLS 636
+ L++
Sbjct: 438 --TTDKLEDDVFE 448
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 50.3 bits (120), Expect = 2e-06
Identities = 52/295 (17%), Positives = 100/295 (33%), Gaps = 48/295 (16%)
Query: 120 SLLRNLEALTLGRGQLGDAFFHAL-ADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 178
+L L L + QL +L L L++ N + +P L +L I
Sbjct: 78 ALPPELRTLEVSGNQL-----TSLPVLPPGLLELSI----FSNPLTHLPALPSGLCKLWI 128
Query: 179 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLD-IASCHKLSDAAIRLAA--TS 235
++ + + P L+ LS+ + L L + KL +L +
Sbjct: 129 FGNQLTSLPVLPPGLQELSV---------SDNQLASLPALPSELCKLWAYNNQLTSLPML 179
Query: 236 CPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCE 295
L+ L +S+ L + + L L + SL + L L +
Sbjct: 180 PSGLQELSVSDNQ------LASLPTLPSELYKLWAYNNRLTSLPA-LPSGLKELIVSGNR 232
Query: 296 GITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSS 355
+TS S L+ L + N LTS+ + L + L++ L+
Sbjct: 233 -LTSLP-VLPSE---LKELMVSG-NRLTSLPMLPSGLLS-----------LSVYRNQLTR 275
Query: 356 I--MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 408
+ + + ++ +N+ N L + +LQ +TS + D+ +
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRE 330
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 50/251 (19%), Positives = 80/251 (31%), Gaps = 51/251 (20%)
Query: 575 SLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTN--TSLESLYKKG------- 625
L L++S LT+L + L+L + L + L L+ G
Sbjct: 79 LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH-LPALPSGLCKLWIFGNQLTSLP 137
Query: 626 -SLPALQELDLSYGTLCQ-----SAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPF 679
P LQEL +S L S + +L AY LT + + +L+
Sbjct: 138 VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP-MLPSGLQELSVS------- 189
Query: 680 ESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSL-NLS 738
N P + L L N R +P S L L
Sbjct: 190 -----DNQLASLP-----TLPSE----LYKLWAY---NNRLTSLPAL-----PSGLKELI 227
Query: 739 LSAN-LKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCG 797
+S N L + V L L +S L +L + L SL + + + ++
Sbjct: 228 VSGNRLTSLPVLPSELKELMVSG-NRLTSLPMLPSGLLSLSVYRNQLTR--LPESLIHLS 284
Query: 798 MLETLDVRFCP 808
T+++ P
Sbjct: 285 SETTVNLEGNP 295
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 43.7 bits (103), Expect = 2e-04
Identities = 53/301 (17%), Positives = 104/301 (34%), Gaps = 40/301 (13%)
Query: 345 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVD--LTD 402
+ RA ++ + +N+ + L L ++T+L + L + +
Sbjct: 23 ESRGRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPE 82
Query: 403 CESLTNSVCEVFSDGGGCPMLKSL-VLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELK 461
+L S ++ S P L L + N LT + + L L + G + +T+L +
Sbjct: 83 LRTLEVSGNQLTSLPVLPPGLLELSIFSN--PLTHLPALPSGLCKLWIFGNQ-LTSLPVL 139
Query: 462 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA 521
P L+++ + + S +P L L +L++L + + L +
Sbjct: 140 PPGLQELSVSDN-QLASLPALPSELCKLWAYNN-QLTSLPMLPSGLQELSVSDN------ 191
Query: 522 YINCPLLTSLDASFCS----QLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL-RSL 576
L SL ++ L++ ++ LI+ + L SL
Sbjct: 192 -----QLASLPTLPSELYKLWAYNNRLTSLPALPSGLKELIVSGNR------LTSLPVLP 240
Query: 577 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK-GSLPALQELDL 635
L L +S LT+L P L L + L L + L + ++L
Sbjct: 241 SELKELMVSGNRLTSL-P--MLPSGLLSL------SVYRNQLTRLPESLIHLSSETTVNL 291
Query: 636 S 636
Sbjct: 292 E 292
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-04
Identities = 53/324 (16%), Positives = 99/324 (30%), Gaps = 48/324 (14%)
Query: 332 LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQ 391
+Q +R A LN+ L+++ A + + I N+L L L +L +
Sbjct: 31 VQKMRACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLP-ALPPELRTLEVS 89
Query: 392 CQCLQEV--DLTDCESLT------NSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTS 443
L + L+ + + S L L + + LT +
Sbjct: 90 GNQLTSLPVLPPGLLELSIFSNPLTHLPALPSG------LCKLWIFGNQ-LTSLPVLPPG 142
Query: 444 LVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIE 503
L LS+ + + +L L K+ + S +P LQ L++ +L++L
Sbjct: 143 LQELSVSDNQ-LASLPALPSELCKLWAYNN-QLTSLPMLPSGLQELSVSDN-QLASLPTL 199
Query: 504 ALHMVVLELKGCGVLSDAYINCPLLTSLDASFCS----QLKDDCLSATTTSCPLIESLIL 559
+ L LTSL A + + L++ ++ L++
Sbjct: 200 PSELYKLWAYNNR-----------LTSLPALPSGLKELIVSGNRLTSLPVLPSELKELMV 248
Query: 560 MSCQSIGPDGLYSL-RSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSL 618
+ L SL L L + LT L + L L
Sbjct: 249 SGNR------LTSLPMLPSGLLSLSVYRNQLTRLPESLIHLSSETTV------NLEGNPL 296
Query: 619 ESLYKKGSLPALQELDLSYGTLCQ 642
+L + G + +
Sbjct: 297 SER-TLQALREITSAPGYSGPIIR 319
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 50/387 (12%), Positives = 113/387 (29%), Gaps = 89/387 (22%)
Query: 260 LSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319
++ I + E + L ++ + + A + +E+L L++
Sbjct: 21 CVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLND- 78
Query: 320 NLLTSVSLE----LPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSN 372
+ + +Q + + + + + N L + + N
Sbjct: 79 LQIEEIDTYAFAYAHTIQKLYMGFNA-----------IRYLPPHVFQNVPLLTVLVLERN 127
Query: 373 SLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432
L L N L + +++ +L + F L++L L +
Sbjct: 128 DLSSLPRGIFHNTPKL-------TTLSMSNN-NLERIEDDTFQ---ATTSLQNLQLSSNR 176
Query: 433 GLTVVRFCS-TSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL 491
LT V SL ++ ++ L +E++ ++ +
Sbjct: 177 -LTHVDLSLIPSLFHANVSYNL-LSTLA-IPIAVEELDASHN-----------SINVVRG 222
Query: 492 GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSC 551
+ +L+ L ++ ++ +N P L +D S+
Sbjct: 223 PVNVELTILKLQHNNLTDT---------AWLLNYPGLVEVDLSYNE-------------- 259
Query: 552 PLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACK 611
+E + +Q L L +S L L + LKVL
Sbjct: 260 --LEKI---------MYH--PFVKMQRLERLYISNNRLVALNLYGQPIPTLKVL------ 300
Query: 612 YLTNTSLESLYKK-GSLPALQELDLSY 637
L++ L + + L+ L L +
Sbjct: 301 DLSHNHLLHVERNQPQFDRLENLYLDH 327
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 47.3 bits (113), Expect = 1e-05
Identities = 54/325 (16%), Positives = 113/325 (34%), Gaps = 63/325 (19%)
Query: 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP----INHDQLRRLE 177
L N + +T + L ++ LN+N ++EI +++L
Sbjct: 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN----DLQIEEIDTYAFAYAHTIQKLY 99
Query: 178 ITKCRVMRVSIRC----PQLEHLSLKRSNMAQ----AVLNCPLLHLLDIASCH--KLSDA 227
+ + + P L L L+R++++ N P L L +++ + ++ D
Sbjct: 100 MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDD 159
Query: 228 AIRLAATSCPQLESLDMSNC--SCVSDE---SLREIALS---------CANLRILNSSYC 273
+ + L++L +S+ + V SL +S + L++S+
Sbjct: 160 TFQ----ATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHN 215
Query: 274 PNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----L 329
+ LT+L+L +T + + + L ++L N L + +
Sbjct: 216 SINVVRGPVNVELTILKLQHNN-LTDTA--WLLNYPGLVEVDLSY-NELEKIMYHPFVKM 271
Query: 330 PRLQNIRLVHCR------KFADL-NLRAMMLSS-------IMVSNCAALHRINITSNSLQ 375
RL+ + + + R + L+ + LS L + + NS+
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIV 331
Query: 376 KLSLQKQENLTSLAL-----QCQCL 395
L L L +L L C L
Sbjct: 332 TLKLSTHHTLKNLTLSHNDWDCNSL 356
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 5e-06
Identities = 47/429 (10%), Positives = 121/429 (28%), Gaps = 107/429 (24%)
Query: 227 AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPML 286
+ + + SLD+S + + S E+ +S +
Sbjct: 12 NPVEEFTSIPHGVTSLDLSLNN-LYSISTVEL---IQAFANTPAS--------------V 53
Query: 287 TVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADL 346
T L L + + + ++L N + ++ L +
Sbjct: 54 TSLNLSGN-SLGFKNSDELV-----QILAAIPAN-----------VTSLNLSGN-FLSYK 95
Query: 347 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESL 406
+ L + + + +++ N S + + + + ++L +
Sbjct: 96 SSDE--LVKTLAAIPFTITVLDLGWNDFSSKSSSEF--KQAFSNLPASITSLNLRGND-- 149
Query: 407 TNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILE 466
L + L ++ SL+L G + +
Sbjct: 150 -------LGIKSS----DEL----IQIL---AAIPANVNSLNLRGNN-LAS--------- 181
Query: 467 KVCLDGCDHIESA-SFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINC 525
C + + +P ++ SL+L L LK L+ + +
Sbjct: 182 ----KNCAELAKFLASIPASVTSLDLSANL--------------LGLKSYAELAYIFSSI 223
Query: 526 P-LLTSLDASFCSQLKDDC---LSATTTSCPLIESLILMSCQ--SIGPDGLYS----LRS 575
P + SL+ L L S ++++ L ++ + + +
Sbjct: 224 PNHVVSLNLCLN-CLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPN 282
Query: 576 LQNLTMLDLSYTFLTN------LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPA 629
+Q + ++D + + + E + V L + ++ + ++P
Sbjct: 283 IQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPD 342
Query: 630 -LQELDLSY 637
L+E +
Sbjct: 343 ELRESIQTC 351
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-04
Identities = 47/362 (12%), Positives = 94/362 (25%), Gaps = 74/362 (20%)
Query: 472 GCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPL-LTS 530
G + +E + +P + SL+L + L L A+ N P +TS
Sbjct: 10 GSNPVEEFTSIPHGVTSLDLSLNN--------------LYSISTVELIQAFANTPASVTS 55
Query: 531 LDASFCSQLKDDCL----SATTTSCPLIESLILMSCQSIGPDGLYSL-----RSLQNLTM 581
L+ S L + SL L + L +T+
Sbjct: 56 LNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF-LSYKSSDELVKTLAAIPFTITV 113
Query: 582 LDLSYTFLTN-----LEPVFESC-LQLKVLKLQACKYLTNTSLESLYK--KGSLPALQEL 633
LDL + ++ + F + + L L+ L S + L + + L
Sbjct: 114 LDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAIPANVNSL 172
Query: 634 DLSY---GTLCQSAIEELLA-YCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCG 689
+L + + + + LA +T + L+ G
Sbjct: 173 NLRGNNLASKNCAELAKFLASIPASVTSLDLSAN------LLGLKSYAE----------- 215
Query: 690 IFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVA 749
+ + +LN L +L+ V +
Sbjct: 216 ------LAYIFSSIPNHVVSLNLCLNC--------LHGPSLENLKLLKDSLKHLQTVYLD 261
Query: 750 CFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGV----ESAITQCGMLETLDVR 805
+ ++ C +L + K+ + I G + +
Sbjct: 262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPISNLIRELSGKADVPSLL 321
Query: 806 FC 807
Sbjct: 322 NQ 323
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 7e-04
Identities = 51/330 (15%), Positives = 94/330 (28%), Gaps = 79/330 (23%)
Query: 513 KGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSA-----TTTSCPLIESLILMSCQSIGP 567
G + + +TSLD S L T + SL L +G
Sbjct: 9 PGSNPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASV-TSLNLSGNS-LGF 65
Query: 568 DGLYSL-----RSLQNLTMLDLSYTFLTN-----LEPVFESC-LQLKVLKLQACKYLTNT 616
L N+T L+LS FL+ L + + VL L ++
Sbjct: 66 KNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSK 124
Query: 617 SLESLYK--KGSLPALQELDLSY---GTLCQSAI-EELLAYCTHLTHVSLNGCGNMHDLN 670
S + ++ L+L G + + L A ++ ++L G N
Sbjct: 125 SSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGN------N 178
Query: 671 WGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLN-------CVGCPNIRKVFI 723
+ C + + + + +L+ + +F
Sbjct: 179 LASKNCA-----------------ELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFS 221
Query: 724 PPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCN 783
H+ SLNL L L+ + +L+ LK L +++L
Sbjct: 222 SIPN---HVVSLNLC--------------LNCLHGPSLENLKLLKDSLKHLQTVYLDYDI 264
Query: 784 IDEEGVE------SAITQCGMLETLDVRFC 807
+ E +A + +D
Sbjct: 265 VKNMSKEQCKALGAAFPNIQKIILVDKNGK 294
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-05
Identities = 24/123 (19%), Positives = 43/123 (34%), Gaps = 11/123 (8%)
Query: 555 ESLILMSCQ-SIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYL 613
L L S S S +L LDLS+ + + F QL+ L
Sbjct: 55 TKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHL------DF 108
Query: 614 TNTSLESLYKKG---SLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLN 670
+++L+ + + SL L LD+S+ + A + + L + + G +
Sbjct: 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHT-RVAFNGIFNGLSSLEVLKMAGNSFQENFL 167
Query: 671 WGA 673
Sbjct: 168 PDI 170
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 36/224 (16%), Positives = 61/224 (27%), Gaps = 54/224 (24%)
Query: 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632
L N +L +T+L + ++ SL + L+E
Sbjct: 15 DPGLANAVKQNLGKQSVTDLVS-QKELSGVQNFNGDNSNI---QSLAGM---QFFTNLKE 67
Query: 633 LDLSYGTLCQSAIEEL--LAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGI 690
L LS + I +L L T L +S+N + +L
Sbjct: 68 LHLS-----HNQISDLSPLKDLTKLEELSVNRN-RLKNL--------------------- 100
Query: 691 FPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVD--V 748
I L L +R +L L++ + LK +
Sbjct: 101 -------NGIPSAC--LSRLFLDNN-ELRD--TDSLIHLKNLEILSIR-NNKLKSIVMLG 147
Query: 749 ACFNLCFLNLSNC--CSLETLKLDCPKLTSLFLQSCNIDEEGVE 790
L L+L + L K+ + L E V+
Sbjct: 148 FLSKLEVLDLHGNEITNTGGLT-RLKKVNWIDLTGQKCVNEPVK 190
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 8e-05
Identities = 62/292 (21%), Positives = 90/292 (30%), Gaps = 57/292 (19%)
Query: 556 SLILMSCQSIGPDGL--YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYL 613
S+ L S SL SL L L LS + + F+ L L L L
Sbjct: 54 SIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN-SL 112
Query: 614 TNT--SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC---GNMHD 668
+ +L SL GS L+ L++S TL L + L+ G
Sbjct: 113 SGPVTTLTSL---GSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 669 LNWGASGCQPFESPSVYNSC--GIFPHENIH--ESIDQPNRLLQNLNCVGCPNIRKVFIP 724
+ GC + ++ + G E +D + + N IP
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLD-----VSSNNFST-------GIP 217
Query: 725 PQARCFHLSSLNLS---LSANLKEVDVACFNLCFLNLS-----------NCCSLETLKLD 770
C L L++S LS + C L LN+S SL+ L L
Sbjct: 218 FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLA 277
Query: 771 ---------------CPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFC 807
C LT L L + V C +LE+L +
Sbjct: 278 ENKFTGEIPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSN 328
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 2e-04
Identities = 96/473 (20%), Positives = 157/473 (33%), Gaps = 93/473 (19%)
Query: 235 SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYC-------PNISLESVRLPMLT 287
S LESL +SN S+ A+L L+ S SL L
Sbjct: 75 SLTGLESLFLSNSHING--SVSGFK-CSASLTSLDLSRNSLSGPVTTLTSL--GSCSGLK 129
Query: 288 VLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLN 347
L + S ++ LEVL+L ++ + + C + L
Sbjct: 130 FLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDG-----CGELKHLA 184
Query: 348 LRAMMLS-SIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESL 406
+ +S + VS C L ++++SN+ + L C LQ +D++ L
Sbjct: 185 ISGNKISGDVDVSRCVNLEFLDVSSNNFS-------TGIPFLG-DCSALQHLDISGN-KL 235
Query: 407 TNSVCEVFSDGGGCPMLKSLVLDNC--EGLTVVRFCSTSLVSLSLVGCR---AI-TALEL 460
+ C LK L + + G + SL LSL + I L
Sbjct: 236 SGDFSRAI---STCTELKLLNISSNQFVG-PIPPLPLKSLQYLSLAENKFTGEIPDFLSG 291
Query: 461 KCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD 520
C L + L G H A VP G C L +L + + + G L
Sbjct: 292 ACDTLTGLDLSGN-HFYGA--VP-----PFFGSCSLLESLALSSNNFS-------GELPM 336
Query: 521 AYI-NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQ-------SIGPDGLYS 572
+ L LD SF + + + T + +L L S ++ + +
Sbjct: 337 DTLLKMRGLKVLDLSFN-EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT 395
Query: 573 LRSL------------------QNLTMLDLSYTFLT-NLEPVFESCLQLKVLKLQACKYL 613
L+ L L L LS+ +L+ + S +L+ LKL L
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM-L 454
Query: 614 TNTSLESLYKKGSLPALQELDLSY----GTLCQSAIEELLAYCTHLTHVSLNG 662
+ L + L+ L L + G + L+ CT+L +SL+
Sbjct: 455 EGEIPQEL---MYVKTLETLILDFNDLTGEIPSG-----LSNCTNLNWISLSN 499
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 111/591 (18%), Positives = 180/591 (30%), Gaps = 188/591 (31%)
Query: 248 SCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISH 307
+C D+ + I LS L + S+ ++ L L L L + + S++
Sbjct: 46 TC-RDDKVTSIDLSSKPLNVGFSAVSSSLL----SLTGLESLFLSNSH--INGSVSGFKC 98
Query: 308 SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRI 367
S L L+L +L S + L ++ +C+ L +
Sbjct: 99 SASLTSLDLSRNSL----SGPVTTLTSL-----------------------GSCSGLKFL 131
Query: 368 NITSNSLQ-KLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 426
N++SN+L + L SL + +DL+ S++ + + GC LK L
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSL-------EVLDLSAN-SISGANVVGWVLSDGCGELKHL 183
Query: 427 VLDNCE---GLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVP 483
+ + + V R +L L + I
Sbjct: 184 AISGNKISGDVDVSRC--VNLEFLDVSSNN------FSTGIPF----------------- 218
Query: 484 VALQSLNLGICPKLSTLGIEALHMVVLELKGC---GVLSDAYINCPLLTSLDASFCSQLK 540
LG C L L++ G G S A C L L+ S
Sbjct: 219 -------LGDCSAL----------QHLDISGNKLSGDFSRAISTCTELKLLNISSNQ--- 258
Query: 541 DDCLSAT--TTSCPLIESLILMSCQSIG--PDGLYSLRSLQNLTMLDLSYTFLT-NLEPV 595
++ L L + G PD L + LT LDLS + P
Sbjct: 259 ---FVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSG--ACDTLTGLDLSGNHFYGAVPPF 313
Query: 596 FESCLQLKVLKLQACKYLTNT-SLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT- 653
F SC L+ L L + + +++L + L+ LDLS+ + E L +
Sbjct: 314 FGSCSLLESLALSSNN-FSGELPMDTL---LKMRGLKVLDLSFNEF-SGELPESLTNLSA 368
Query: 654 HLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCV 713
L + L+ N I L QN
Sbjct: 369 SLLTLDLSSN-------------------------------NFSGPI--LPNLCQNPK-- 393
Query: 714 GCPNIRKVF---------IPPQ-ARCFHLSSLNLS---LSANLKEVDVACFNLCFLNLS- 759
+++++ IPP + C L SL+LS LS + + L L L
Sbjct: 394 --NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWL 451
Query: 760 ------------NCCSLETLKLD--------------CPKLTSLFLQSCNI 784
+LETL LD C L + L + +
Sbjct: 452 NMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRL 502
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 42.2 bits (100), Expect = 6e-04
Identities = 53/272 (19%), Positives = 91/272 (33%), Gaps = 47/272 (17%)
Query: 189 RCPQLEHLSLKRSNMA---QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMS 245
LE L L S++ L LD++ + SC L+ L++S
Sbjct: 75 SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS 134
Query: 246 NCSCVSDESLREIALSCANLRILNSSYC------PNISLESVRLPMLTVLQLHSC--EGI 297
+ + + L +L +L+ S + S L L + G
Sbjct: 135 SNTLDFPGKV-SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGD 193
Query: 298 TSASMAAISHSYMLEVLELDNCNLLTSVSL--ELPRLQNIRLVHCRKFADLNLRAMMLSS 355
+S LE L++ + N T + + LQ++ + L +
Sbjct: 194 VD-----VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGN------KLSGDFSRA 242
Query: 356 IMVSNCAALHRINITSNSLQ-KLSLQKQENLTSLAL---------------QCQCLQEVD 399
I S C L +NI+SN + ++L L+L C L +D
Sbjct: 243 I--STCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLD 300
Query: 400 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 431
L+ +V F G C +L+SL L +
Sbjct: 301 LSGN-HFYGAVPPFF---GSCSLLESLALSSN 328
|
| >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 | Back alignment and structure |
|---|
Score = 42.2 bits (98), Expect = 1e-04
Identities = 15/46 (32%), Positives = 19/46 (41%), Gaps = 19/46 (41%)
Query: 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIE 646
LK KLQA SL+ LY S PAL ++ +E
Sbjct: 21 ALK--KLQA-------SLK-LYADDSAPALA---------IKATME 47
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 44.4 bits (105), Expect = 1e-04
Identities = 70/406 (17%), Positives = 127/406 (31%), Gaps = 78/406 (19%)
Query: 282 RLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE----LPRLQNIRL 337
RL L L++ L +L+LD N + L L+ + L
Sbjct: 52 RLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY-NQFLQLETGAFNGLANLEVLTL 110
Query: 338 VHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL----QKQENLTSLAL--- 390
C L +LS +L + + N+++K+ L L
Sbjct: 111 TQCN------LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164
Query: 391 --QCQC------LQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCST 442
+ C Q T + ++ ++ + K +T +
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDM--NEYWLGWEKCGNPFKNTSITTLDLSGN 222
Query: 443 SLVSLSLVG-CRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 501
AI +++ IL + +SF + + L G
Sbjct: 223 GFKESMAKRFFDAIAGTKIQSLILS------NSYNMGSSFGHTNFKDPDNFTFKGLEASG 276
Query: 502 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMS 561
++ LS + + +L S S D +E L L
Sbjct: 277 VKTCD-----------LSK---SK--IFALLKSVFSHFTD------------LEQLTLAQ 308
Query: 562 --CQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSL 618
I D + L +L L+LS FL +++ +FE+ +L+VL L+ +
Sbjct: 309 NEINKI-DDN--AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVL------DLSYNHI 359
Query: 619 ESLYKK--GSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662
+L + LP L+EL L L +S + + T L + L+
Sbjct: 360 RALGDQSFLGLPNLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHT 404
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 2e-04
Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 6/90 (6%)
Query: 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632
L ++NL +L L + +E + L+ L +++ + SL L L+
Sbjct: 66 LSGMENLRILSLGRNLIKKIENLDAVADTLEEL------WISYNQIASLSGIEKLVNLRV 119
Query: 633 LDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662
L +S + + LA L + L G
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAG 149
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 17/91 (18%), Positives = 28/91 (30%), Gaps = 7/91 (7%)
Query: 572 SLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK-GSLPAL 630
L LDLS L + P F+S + + L N L + K L
Sbjct: 186 GQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWI------SLRNNKLVLIEKALRFSQNL 239
Query: 631 QELDLSYGTLCQSAIEELLAYCTHLTHVSLN 661
+ DL + + + + V+
Sbjct: 240 EHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 37/254 (14%), Positives = 73/254 (28%), Gaps = 60/254 (23%)
Query: 574 RSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKK--GSLPAL 630
++ + ++ + L + +S +K L L+ L + L
Sbjct: 7 QNGNRYKIEKVTDSSLKQALASLRQSAWNVKEL------DLSGNPLSQISAADLAPFTKL 60
Query: 631 QELDLSYGTLCQSAIEEL--LAYCTHLTHVSLNG--------CGNMHDLNWGASGCQPFE 680
+ L+LS + + E L + L + LN ++ L+
Sbjct: 61 ELLNLSS-----NVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLH---------- 105
Query: 681 SPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLN-LSL 739
+ NI + +N+ I + S + L L
Sbjct: 106 ----------AANNNISRVSCSRGQGKKNIYLANN-KITM--LRDLD-EGCRSRVQYLDL 151
Query: 740 SAN-LKEVDVACF-----NLCFLNLSNCCSLETLKLD--CPKLTSLFLQSCNIDEEGVES 791
N + V+ A L LNL + +K KL +L L S + +
Sbjct: 152 KLNEIDTVNFAELAASSDTLEHLNLQY-NFIYDVKGQVVFAKLKTLDLSSNKLAF--MGP 208
Query: 792 AITQCGMLETLDVR 805
+ + +R
Sbjct: 209 EFQSAAGVTWISLR 222
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 19/143 (13%), Positives = 51/143 (35%), Gaps = 20/143 (13%)
Query: 254 SLREIALSCANLRILNSSYCPNISLES---VRLPMLTVLQLHSCEGITSASMAAISHSYM 310
++ EI + +I + + + L L ++ S A ++
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNP-LSQISAADLAPFTK 59
Query: 311 LEVLELDNCNLLTSVS--LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRIN 368
LE+L L + N+L L L+ + L + + + ++ ++
Sbjct: 60 LELLNLSS-NVLYETLDLESLSTLRTLDLNNNY-----------VQEL--LVGPSIETLH 105
Query: 369 ITSNSLQKLSLQKQENLTSLALQ 391
+N++ ++S + + ++ L
Sbjct: 106 AANNNISRVSCSRGQGKKNIYLA 128
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 21/112 (18%), Positives = 39/112 (34%), Gaps = 9/112 (8%)
Query: 554 IESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYL 613
++ L+L + +S + L L LT++ +LK L L
Sbjct: 19 VKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA-NLPKLNKLKKL------EL 71
Query: 614 TNTSLESLYK--KGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGC 663
++ + + P L L+LS + + E L +L + L C
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 27/169 (15%), Positives = 63/169 (37%), Gaps = 21/169 (12%)
Query: 116 MKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIP--INHDQL 173
+ A++ L++++ L L Q+ D LA S L+ L ++ N + I L
Sbjct: 100 VSAIAGLQSIKTLDLTSTQITD--VTPLAGLSNLQVLYLDL----NQITNISPLAGLTNL 153
Query: 174 RRLEITKCRVMRVSI--RCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAI 229
+ L I +V ++ +L L + ++ + + P L + + + + +
Sbjct: 154 QYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVSPL 213
Query: 230 RLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISL 278
+ L + ++N + + NL + N P+ +
Sbjct: 214 ----ANTSNLFIVTLTNQTITNQPVFYNN-----NLVVPNVVKGPSGAP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 35/238 (14%), Positives = 71/238 (29%), Gaps = 56/238 (23%)
Query: 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632
+L N + + +T+ + L T + ++ L L
Sbjct: 15 DPALANAIKIAAGKSNVTDTVT-QADLDGITTL------SAFGTGVTTIEGVQYLNNLIG 67
Query: 633 LDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFP 692
L+L + + + L T +T + L+G
Sbjct: 68 LELKDNQI--TDLAP-LKNLTKITELELSGN----------------------------- 95
Query: 693 HENIHESIDQPNRL--LQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDV-- 748
+ +++ L ++ L+ I + P A +L L L + +
Sbjct: 96 --PL-KNVSAIAGLQSIKTLDLTST-QITD--VTPLAGLSNLQVLYLD-LNQITNISPLA 148
Query: 749 ACFNLCFLNLSNC--CSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDV 804
NL +L++ N L L + KLT+L I + S + L + +
Sbjct: 149 GLTNLQYLSIGNAQVSDLTPLA-NLSKLTTLKADDNKISD---ISPLASLPNLIEVHL 202
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 42.0 bits (99), Expect = 6e-04
Identities = 39/270 (14%), Positives = 81/270 (30%), Gaps = 59/270 (21%)
Query: 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQE 632
+ +L +T+ + + S++ + LP + +
Sbjct: 20 DDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDI---KSVQGI---QYLPNVTK 72
Query: 633 LDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFP 692
L L+ L + I+ LA +L + L+
Sbjct: 73 LFLNGNKL--TDIKP-LANLKNLGWLFLDEN----------------------------- 100
Query: 693 HENIHESIDQPNRL--LQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDV-- 748
+ + + L L++L+ I I L SL L + + ++ V
Sbjct: 101 --KV-KDLSSLKDLKKLKSLSLEHN-GISD--INGLVHLPQLESLYLG-NNKITDITVLS 153
Query: 749 ACFNLCFLNLSNC--CSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRF 806
L L+L + + L KL +L+L +I + A+ L+ L++
Sbjct: 154 RLTKLDTLSLEDNQISDIVPLA-GLTKLQNLYLSKNHISD---LRALAGLKNLDVLELFS 209
Query: 807 CPKICSTSMGRLR--AACPSLKRIFSSLTT 834
+ + ++K SL T
Sbjct: 210 QE-CLNKPINHQSNLVVPNTVKNTDGSLVT 238
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 7e-04
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 7/91 (7%)
Query: 572 SLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQ 631
+ LDL + +E + + Q + ++ + L L L+
Sbjct: 14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAI------DFSDNEIRKLDGFPLLRRLK 67
Query: 632 ELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662
L ++ +C E L LT + L
Sbjct: 68 TLLVNNNRIC-RIGEGLDQALPDLTELILTN 97
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 99.98 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 99.97 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 99.97 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.97 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 99.96 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.95 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.95 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.95 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 99.94 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 99.94 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.94 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 99.92 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 99.92 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.92 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 99.91 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 99.91 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.9 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 99.9 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.89 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.89 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 99.88 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.88 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.86 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.85 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.83 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.83 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.83 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.81 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.8 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.79 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.78 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.78 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.78 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.78 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.78 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.77 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.76 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.75 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.75 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.75 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.74 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.74 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.74 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.74 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.73 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.73 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.73 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.73 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.73 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.72 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.7 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.68 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.68 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.66 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.64 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.63 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.62 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.61 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.6 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.59 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.59 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.58 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.58 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.58 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.57 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.57 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.49 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.47 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.45 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.44 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.43 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.42 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.4 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.4 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.39 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.39 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.39 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.38 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.38 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.35 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.34 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.34 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.34 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.32 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.29 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.29 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.28 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.28 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.28 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.27 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.26 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.26 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.26 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.24 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.24 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.22 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.22 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.21 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.2 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.18 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.17 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.16 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.13 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.12 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.12 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.11 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.08 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.07 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.06 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.03 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.01 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.01 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 99.0 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 98.98 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.95 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 98.94 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 98.93 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.92 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 98.75 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.74 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.73 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.7 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.7 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.68 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.66 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 98.61 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 98.61 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.58 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.46 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 98.43 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.3 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 98.3 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 98.02 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.78 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 97.65 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.65 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 95.81 | |
| 1fs1_A | 53 | SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L | 90.24 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 89.6 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-51 Score=478.49 Aligned_cols=634 Identities=18% Similarity=0.178 Sum_probs=355.9
Q ss_pred HHHHHHHhhcCCCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhH---HHHHHhhCCcCcEEEcCCcccCh
Q 003270 61 CIWQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLL---VMKAVSLLRNLEALTLGRGQLGD 137 (835)
Q Consensus 61 v~~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~---~~~~l~~~~~L~~L~l~~~~i~~ 137 (835)
+...|. ...++|.|++|.|+ . .+++.|+++++ .+.+. +++++..+++|+.++++.+.+..
T Consensus 29 ~l~~W~-~~~~~C~w~gv~C~-~--------------~~v~~L~L~~~-~l~g~~~~l~~~l~~L~~L~~l~~~~~~~~~ 91 (768)
T 3rgz_A 29 LLPDWS-SNKNPCTFDGVTCR-D--------------DKVTSIDLSSK-PLNVGFSAVSSSLLSLTGLESLFLSNSHING 91 (768)
T ss_dssp SSTTCC-TTSCGGGSTTEEEE-T--------------TEEEEEECTTS-CCCEEHHHHHHHTTTCTTCCEEECTTSCEEE
T ss_pred cccCCC-CCCCCcCCcceEEC-C--------------CcEEEEECCCC-CcCCccCccChhHhccCcccccCCcCCCcCC
Confidence 355796 45678999999996 2 27999999994 55554 77889999999999999887753
Q ss_pred hhHHhhcCCCCCCEEEecCCCCCccccc--ccccCCcccEEeccCcccccc-----ccCCCCCcEEEecccchHHHhhcC
Q 003270 138 AFFHALADCSMLKSLNVNDATLGNGVQE--IPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMAQAVLNC 210 (835)
Q Consensus 138 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~i~~~~~~~ 210 (835)
+|..++.+++|++|++++|.+.+.+|. .++++++|++|++++|.+... ..++++|++|++++|.+.
T Consensus 92 -l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~------ 164 (768)
T 3rgz_A 92 -SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSIS------ 164 (768)
T ss_dssp -CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCE------
T ss_pred -CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccC------
Confidence 567899999999999999999988888 888899999999988876421 124555555555555443
Q ss_pred CCCcEEeecCCCCCCHHHHHHH---HhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCC
Q 003270 211 PLLHLLDIASCHKLSDAAIRLA---ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLP 284 (835)
Q Consensus 211 ~~L~~L~l~~~~~l~~~~l~~~---~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~ 284 (835)
.. .+.. +.++++|++|++++|. +.+..+. ..+++|++|++++|. .+|. ++.++
T Consensus 165 ---------------~~-~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~ 223 (768)
T 3rgz_A 165 ---------------GA-NVVGWVLSDGCGELKHLAISGNK-ISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCS 223 (768)
T ss_dssp ---------------EE-THHHHHHTTCCTTCCEEECCSSE-EESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCC
T ss_pred ---------------Cc-CChhhhhhccCCCCCEEECCCCc-ccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCC
Confidence 11 1111 3444555555555544 3221111 145555555555554 2233 55666
Q ss_pred CCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee---eec-c
Q 003270 285 MLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVS-N 360 (835)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~---~l~-~ 360 (835)
+|++|++++| .+.+..+..++.+++|++|++++|.+.+.+|.. .+++|+.+++.++.+++. .+. .
T Consensus 224 ~L~~L~Ls~n-~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----------~l~~L~~L~L~~n~l~~~ip~~~~~~ 292 (768)
T 3rgz_A 224 ALQHLDISGN-KLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----------PLKSLQYLSLAENKFTGEIPDFLSGA 292 (768)
T ss_dssp SCCEEECCSS-CCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----------CCTTCCEEECCSSEEEESCCCCSCTT
T ss_pred CCCEEECcCC-cCCCcccHHHhcCCCCCEEECCCCcccCccCcc----------ccCCCCEEECcCCccCCccCHHHHhh
Confidence 6666666665 566666666777777777777777665554432 222333333333333311 222 2
Q ss_pred CCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhh-ccCCCCCCCccEEEecCCCCCc-ccc
Q 003270 361 CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV-FSDGGGCPMLKSLVLDNCEGLT-VVR 438 (835)
Q Consensus 361 ~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~-~~~ 438 (835)
|++|++|++++|.+++..+..+. .+++|++|++++ +.+++..|.. + ..+++|++|++++|. ++ .++
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~-------~l~~L~~L~L~~-n~l~~~ip~~~l---~~l~~L~~L~Ls~n~-l~~~~p 360 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFG-------SCSLLESLALSS-NNFSGELPMDTL---LKMRGLKVLDLSFNE-FSGELP 360 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGG-------GCTTCCEEECCS-SEEEEECCHHHH---TTCTTCCEEECCSSE-EEECCC
T ss_pred cCcCCEEECcCCcCCCccchHHh-------cCCCccEEECCC-CcccCcCCHHHH---hcCCCCCEEeCcCCc-cCcccc
Confidence 47777777777777765443332 346777777777 4666544433 4 567777777777765 22 111
Q ss_pred ccCCcceEEeccCCcccccccccC-CCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcc
Q 003270 439 FCSTSLVSLSLVGCRAITALELKC-PILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV 517 (835)
Q Consensus 439 ~~~~~l~~l~l~~~~~l~~l~~~~-~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~ 517 (835)
.. ...+ ++|+.++++++.-.+ .+|..+ ....+++|+.+++++|.++ +.
T Consensus 361 ~~------------------l~~l~~~L~~L~Ls~N~l~~---~~~~~~---~~~~~~~L~~L~L~~n~l~-------~~ 409 (768)
T 3rgz_A 361 ES------------------LTNLSASLLTLDLSSNNFSG---PILPNL---CQNPKNTLQELYLQNNGFT-------GK 409 (768)
T ss_dssp TT------------------HHHHTTTCSEEECCSSEEEE---ECCTTT---TCSTTCCCCEEECCSSEEE-------EE
T ss_pred HH------------------HHhhhcCCcEEEccCCCcCC---CcChhh---hhcccCCccEEECCCCccc-------cc
Confidence 10 0011 245555555442211 112211 0112455666666666664 55
Q ss_pred cccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHH
Q 003270 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVF 596 (835)
Q Consensus 518 l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~ 596 (835)
+|..+.++++|++|++++| .+. +.++..+..+++|+.|++++|...+.. +..+..+++|++|++++|++++ +|..+
T Consensus 410 ~p~~l~~l~~L~~L~Ls~N-~l~-~~~p~~l~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p~~l 486 (768)
T 3rgz_A 410 IPPTLSNCSELVSLHLSFN-YLS-GTIPSSLGSLSKLRDLKLWLNMLEGEI-PQELMYVKTLETLILDFNDLTGEIPSGL 486 (768)
T ss_dssp CCGGGGGCTTCCEEECCSS-EEE-SCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGG
T ss_pred cCHHHhcCCCCCEEECcCC-ccc-CcccHHHhcCCCCCEEECCCCcccCcC-CHHHcCCCCceEEEecCCcccCcCCHHH
Confidence 5666666666666666666 232 234555666666666666666644332 5556666666666666666664 55566
Q ss_pred hccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCcccccccccc
Q 003270 597 ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGC 676 (835)
Q Consensus 597 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~ 676 (835)
..+++|++|++++|+ +++..+..+ +.+++|++|++++|++++ .+|..+..+++|++|++++|+....++...
T Consensus 487 ~~l~~L~~L~L~~N~-l~~~~p~~~---~~l~~L~~L~L~~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~--- 558 (768)
T 3rgz_A 487 SNCTNLNWISLSNNR-LTGEIPKWI---GRLENLAILKLSNNSFSG-NIPAELGDCRSLIWLDLNTNLFNGTIPAAM--- 558 (768)
T ss_dssp GGCTTCCEEECCSSC-CCSCCCGGG---GGCTTCCEEECCSSCCEE-ECCGGGGGCTTCCEEECCSSEEESBCCGGG---
T ss_pred hcCCCCCEEEccCCc-cCCcCChHH---hcCCCCCEEECCCCcccC-cCCHHHcCCCCCCEEECCCCccCCcCChHH---
Confidence 666666666666666 555555443 456666666666666665 455556666666666666665332322111
Q ss_pred CCCCCCccccccccC-----------CCC---C------cccccC---ccccccccccccCCCCccccccCcccccCccc
Q 003270 677 QPFESPSVYNSCGIF-----------PHE---N------IHESID---QPNRLLQNLNCVGCPNIRKVFIPPQARCFHLS 733 (835)
Q Consensus 677 ~~~~l~~l~~~~~~~-----------~~~---~------~~~~~~---~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~ 733 (835)
.....+....... ... . ...... .....++.+++.. ..+.....+.++.+++|+
T Consensus 559 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-~~~~g~~~~~~~~l~~L~ 635 (768)
T 3rgz_A 559 --FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITS-RVYGGHTSPTFDNNGSMM 635 (768)
T ss_dssp --GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTS-CEEEEECCCSCSSSBCCC
T ss_pred --hcccchhhhhccccccccccccccccccccccccccccccccchhhhcccccccccccc-ceecccCchhhhcccccc
Confidence 1100000000000 000 0 000000 0001111111111 011111122355666677
Q ss_pred eEeccCCC---CccccccccccccEEecccccchhhhhh---cCCccceeecccCcCChhHHHHHHhcCCCcceeecccc
Q 003270 734 SLNLSLSA---NLKEVDVACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFC 807 (835)
Q Consensus 734 ~L~l~~~~---~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c 807 (835)
.|+++++. .++.....+++|+.|++++|..-..+|. .+++|++|++++|+++ +.+|..+..+++|++||+++|
T Consensus 636 ~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~-g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 636 FLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD-GRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp EEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCE-ECCCGGGGGCCCCSEEECCSS
T ss_pred EEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECcCC
Confidence 77776543 3333344566677777777664445553 4566777777777765 456666667777777777766
Q ss_pred c
Q 003270 808 P 808 (835)
Q Consensus 808 ~ 808 (835)
+
T Consensus 715 ~ 715 (768)
T 3rgz_A 715 N 715 (768)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-49 Score=463.79 Aligned_cols=655 Identities=19% Similarity=0.208 Sum_probs=453.7
Q ss_pred HHHHHHhhcCCCCceeeccCCCCCCHH--HHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhh
Q 003270 62 IWQWRAASAHEDFWRCLNFENRKISVE--QFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAF 139 (835)
Q Consensus 62 ~~~W~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~ 139 (835)
|-+|..+..+....+.++++....... .+...+..+++++.++++.+ .+.. .+..+..+++|++|++++|.+.+.+
T Consensus 39 ~C~w~gv~C~~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~l~~~~~-~~~~-l~~~~~~l~~L~~L~Ls~n~l~~~~ 116 (768)
T 3rgz_A 39 PCTFDGVTCRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNS-HING-SVSGFKCSASLTSLDLSRNSLSGPV 116 (768)
T ss_dssp GGGSTTEEEETTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCEEECTTS-CEEE-CCCCCCCCTTCCEEECCSSEEEEEG
T ss_pred CcCCcceEECCCcEEEEECCCCCcCCccCccChhHhccCcccccCCcCC-CcCC-CchhhccCCCCCEEECCCCcCCCcC
Confidence 558988766555677888887666542 35666778888999999884 3432 3457899999999999999999988
Q ss_pred HH--hhcCCCCCCEEEecCCCCCccccccc-ccCCcccEEeccCcccccc-------ccCCCCCcEEEecccchHH--Hh
Q 003270 140 FH--ALADCSMLKSLNVNDATLGNGVQEIP-INHDQLRRLEITKCRVMRV-------SIRCPQLEHLSLKRSNMAQ--AV 207 (835)
Q Consensus 140 ~~--~l~~~~~L~~L~l~~~~~~~~~~~~~-~~l~~L~~L~l~~~~~~~~-------~~~l~~L~~L~l~~~~i~~--~~ 207 (835)
|. .++.+++|++|++++|.+.+.+|..+ .++++|++|++++|.+... ..++++|++|++++|.+.. .+
T Consensus 117 ~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 196 (768)
T 3rgz_A 117 TTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV 196 (768)
T ss_dssp GGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC
T ss_pred CChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc
Confidence 88 99999999999999999988777655 7899999999999998643 3578999999999998862 34
Q ss_pred hcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCC
Q 003270 208 LNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLP 284 (835)
Q Consensus 208 ~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~ 284 (835)
..+++|++|++++|. +.. .++. ++++++|++|++++|. +++..+..+. .+++|++|++++|. .+|.. .++
T Consensus 197 ~~l~~L~~L~Ls~n~-l~~-~~~~-l~~l~~L~~L~Ls~n~-l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~~~~--~l~ 269 (768)
T 3rgz_A 197 SRCVNLEFLDVSSNN-FST-GIPF-LGDCSALQHLDISGNK-LSGDFSRAIS-TCTELKLLNISSNQFVGPIPPL--PLK 269 (768)
T ss_dssp TTCTTCCEEECCSSC-CCS-CCCB-CTTCCSCCEEECCSSC-CCSCHHHHTT-TCSSCCEEECCSSCCEESCCCC--CCT
T ss_pred ccCCcCCEEECcCCc-CCC-CCcc-cccCCCCCEEECcCCc-CCCcccHHHh-cCCCCCEEECCCCcccCccCcc--ccC
Confidence 789999999999984 542 3344 7899999999999999 8877777776 89999999999987 23332 788
Q ss_pred CCcEEecCCCCCCChhhHHHhhh-ccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccc-ee---eec
Q 003270 285 MLTVLQLHSCEGITSASMAAISH-SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS-SI---MVS 359 (835)
Q Consensus 285 ~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~-~~---~l~ 359 (835)
+|++|++++| .+.+..+..+.. +++|++|++++|.+.+.+|..+.. +++|+.+++.++.++ .+ .+.
T Consensus 270 ~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~--------l~~L~~L~L~~n~l~~~ip~~~l~ 340 (768)
T 3rgz_A 270 SLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS--------CSLLESLALSSNNFSGELPMDTLL 340 (768)
T ss_dssp TCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG--------CTTCCEEECCSSEEEEECCHHHHT
T ss_pred CCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc--------CCCccEEECCCCcccCcCCHHHHh
Confidence 8888888887 666666666655 488888888888876666543322 222233333333333 11 144
Q ss_pred cCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccc
Q 003270 360 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRF 439 (835)
Q Consensus 360 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~ 439 (835)
.+++|++|++++|.+++..+.....+ .++|++|++++ +.+++..+..+.. ..+++|++|++++|.
T Consensus 341 ~l~~L~~L~Ls~n~l~~~~p~~l~~l------~~~L~~L~Ls~-N~l~~~~~~~~~~-~~~~~L~~L~L~~n~------- 405 (768)
T 3rgz_A 341 KMRGLKVLDLSFNEFSGELPESLTNL------SASLLTLDLSS-NNFSGPILPNLCQ-NPKNTLQELYLQNNG------- 405 (768)
T ss_dssp TCTTCCEEECCSSEEEECCCTTHHHH------TTTCSEEECCS-SEEEEECCTTTTC-STTCCCCEEECCSSE-------
T ss_pred cCCCCCEEeCcCCccCccccHHHHhh------hcCCcEEEccC-CCcCCCcChhhhh-cccCCccEEECCCCc-------
Confidence 45555555555555544332222111 02455555555 3444433332210 113344444444442
Q ss_pred cCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccc
Q 003270 440 CSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS 519 (835)
Q Consensus 440 ~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~ 519 (835)
-. +.+|.. +.++++|+.+++++|.++ +.+|
T Consensus 406 -----------------------------------l~---~~~p~~-----l~~l~~L~~L~Ls~N~l~-------~~~p 435 (768)
T 3rgz_A 406 -----------------------------------FT---GKIPPT-----LSNCSELVSLHLSFNYLS-------GTIP 435 (768)
T ss_dssp -----------------------------------EE---EECCGG-----GGGCTTCCEEECCSSEEE-------SCCC
T ss_pred -----------------------------------cc---cccCHH-----HhcCCCCCEEECcCCccc-------Cccc
Confidence 11 123333 677888999999999886 7888
Q ss_pred cccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHHhc
Q 003270 520 DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFES 598 (835)
Q Consensus 520 ~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~ 598 (835)
..+..+++|++|++++|. +. +.++..+..+++|++|++++|...+.. +..+..+++|++|++++|++++ +|..++.
T Consensus 436 ~~l~~l~~L~~L~L~~n~-l~-~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~ 512 (768)
T 3rgz_A 436 SSLGSLSKLRDLKLWLNM-LE-GEIPQELMYVKTLETLILDFNDLTGEI-PSGLSNCTNLNWISLSNNRLTGEIPKWIGR 512 (768)
T ss_dssp GGGGGCTTCCEEECCSSC-CC-SCCCGGGGGCTTCCEEECCSSCCCSCC-CGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred HHHhcCCCCCEEECCCCc-cc-CcCCHHHcCCCCceEEEecCCcccCcC-CHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence 888999999999999984 43 457777888999999999999876544 6788899999999999999985 7888899
Q ss_pred cccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCcccc--------
Q 003270 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLN-------- 670 (835)
Q Consensus 599 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-------- 670 (835)
+++|++|++++|+ +++..+..+ ..+++|+.|++++|++++ .+|..+..+..+..+.+..+..+....
T Consensus 513 l~~L~~L~L~~N~-l~~~~p~~l---~~l~~L~~L~Ls~N~l~g-~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 587 (768)
T 3rgz_A 513 LENLAILKLSNNS-FSGNIPAEL---GDCRSLIWLDLNTNLFNG-TIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKEC 587 (768)
T ss_dssp CTTCCEEECCSSC-CEEECCGGG---GGCTTCCEEECCSSEEES-BCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTC
T ss_pred CCCCCEEECCCCc-ccCcCCHHH---cCCCCCCEEECCCCccCC-cCChHHhcccchhhhhccccccccccccccccccc
Confidence 9999999999998 877777665 678899999999999887 567666666665555444322111100
Q ss_pred ---------ccccccCCCCCCccccccccCCCCCccc---ccCccccccccccccCCCCccccccC-cccccCccceEec
Q 003270 671 ---------WGASGCQPFESPSVYNSCGIFPHENIHE---SIDQPNRLLQNLNCVGCPNIRKVFIP-PQARCFHLSSLNL 737 (835)
Q Consensus 671 ---------~~~~~~~~~~l~~l~~~~~~~~~~~~~~---~~~~~~~~L~~L~i~~~~~l~~~~~~-~~~~~~~L~~L~l 737 (835)
.+........++.+... ......... .....+..|+.|+++++. ++.. +| .++.+++|+.|++
T Consensus 588 ~~~~~~~~~~~~~~~~~~~l~~~~~~--~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~-l~g~-ip~~l~~l~~L~~L~L 663 (768)
T 3rgz_A 588 HGAGNLLEFQGIRSEQLNRLSTRNPC--NITSRVYGGHTSPTFDNNGSMMFLDMSYNM-LSGY-IPKEIGSMPYLFILNL 663 (768)
T ss_dssp CSSEEEEECTTCCGGGGGGGGGTCCS--CTTSCEEEEECCCSCSSSBCCCEEECCSSC-CBSC-CCGGGGGCTTCCEEEC
T ss_pred cccccccccccccchhhhcccccccc--ccccceecccCchhhhccccccEEECcCCc-cccc-CCHHHhccccCCEEeC
Confidence 00000111111110000 000000000 112335779999999874 4433 44 4899999999999
Q ss_pred cCCC---CccccccccccccEEecccccchhhhhh---cCCccceeecccCcCChhHHHHHHhcCCCcceeecccccCCC
Q 003270 738 SLSA---NLKEVDVACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKIC 811 (835)
Q Consensus 738 ~~~~---~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~~l~ 811 (835)
+++. .++.....+++|++|++++|.--..+|. .+++|++|++++|+++ +.+|. ...+.++....+.+||.+|
T Consensus 664 s~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~-g~iP~-~~~~~~~~~~~~~gN~~Lc 741 (768)
T 3rgz_A 664 GHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS-GPIPE-MGQFETFPPAKFLNNPGLC 741 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEE-EECCS-SSSGGGSCGGGGCSCTEEE
T ss_pred cCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCccc-ccCCC-chhhccCCHHHhcCCchhc
Confidence 9863 4555566889999999999986667764 5789999999999986 55665 2445566777888999887
Q ss_pred ch
Q 003270 812 ST 813 (835)
Q Consensus 812 ~~ 813 (835)
..
T Consensus 742 g~ 743 (768)
T 3rgz_A 742 GY 743 (768)
T ss_dssp ST
T ss_pred CC
Confidence 64
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-41 Score=398.58 Aligned_cols=572 Identities=19% Similarity=0.134 Sum_probs=287.3
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|++++ +.+....+..|..+++|++|++++|.+++..|.+++++++|++|++++|.+++..+..+.++++|++|+
T Consensus 25 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTH-NQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCS-SCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCcEEECCC-CCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 4688888887 456665556677888888888888888777777788888888888888877654444577777777777
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+.. ..++.+++|++|++++|. ++. ..+..++++++|++|++++|. +++..+..
T Consensus 104 L~~n~l~~~~~----------------~~~~~l~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~ 164 (680)
T 1ziw_A 104 LMSNSIQKIKN----------------NPFVKQKNLITLDLSHNG-LSS-TKLGTQVQLENLQELLLSNNK-IQALKSEE 164 (680)
T ss_dssp CCSSCCCCCCS----------------CTTTTCTTCCEEECCSSC-CSC-CCCCSSSCCTTCCEEECCSSC-CCCBCHHH
T ss_pred CCCCccCccCh----------------hHccccCCCCEEECCCCc-ccc-cCchhhcccccCCEEEccCCc-ccccCHHH
Confidence 77776654321 123344444455554442 221 112223445555555555554 44333332
Q ss_pred HH-HhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhhHHHhh---hccCccEEEccCCCccccccccCc
Q 003270 258 IA-LSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAIS---HSYMLEVLELDNCNLLTSVSLELP 330 (835)
Q Consensus 258 ~~-~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~~~~~~~~ 330 (835)
+. ..+++|+.|++++|. ..+..+..+++|+.|++.++ .+.+.....+. ..++|++|++++|.+.+..|..+.
T Consensus 165 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~ 243 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFL 243 (680)
T ss_dssp HGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTG
T ss_pred hhccccccccEEECCCCcccccChhhhhhhhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccChhHhh
Confidence 21 133555555555554 12333445566666666654 34333322222 235677777777766555554443
Q ss_pred ccceeeccccccccchhhccccccee---eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCc
Q 003270 331 RLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT 407 (835)
Q Consensus 331 ~L~~L~~~~~~~l~~l~l~~~~l~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~ 407 (835)
.++ .++++.++++++.++.+ .+..+++|++|++++|.+++..+..+. .+++|++|++++| ...
T Consensus 244 ~l~------~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~~-~~~ 309 (680)
T 1ziw_A 244 GLK------WTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLH-------GLFNVRYLNLKRS-FTK 309 (680)
T ss_dssp GGG------GSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTT-------TCTTCCEEECTTC-BCC
T ss_pred ccC------cCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhc-------CCCCccEEeccch-hhh
Confidence 211 11244444444444443 356777888888888877765433322 3467888888763 322
Q ss_pred hh-----hhhh-ccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccc
Q 003270 408 NS-----VCEV-FSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASF 481 (835)
Q Consensus 408 ~~-----~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~ 481 (835)
+. .|.. -..+..+++|++|++++|. ++.++. .....+++|+++++++|.
T Consensus 310 ~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~-----------------~~~~~l~~L~~L~Ls~n~------- 364 (680)
T 1ziw_A 310 QSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS-----------------NMFTGLINLKYLSLSNSF------- 364 (680)
T ss_dssp C------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-----------------TTTTTCTTCCEEECTTCB-------
T ss_pred cccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-----------------hHhccccCCcEEECCCCc-------
Confidence 11 1110 0012567777777777765 332210 001123344444444432
Q ss_pred ccccccccccCcCCCCcccccccceeEEEeecCCccccc-ccc--cCCCcceEecccCCCCccchhhhhhhcCCCccEEe
Q 003270 482 VPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD-AYI--NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLI 558 (835)
Q Consensus 482 ~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~-~~~--~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~ 558 (835)
+.. ..++. .+. ..++|+.|++++| .+.. ..+..+..+++|+.|+
T Consensus 365 -------------------------~~~------~~l~~~~f~~~~~~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~ 411 (680)
T 1ziw_A 365 -------------------------TSL------RTLTNETFVSLAHSPLHILNLTKN-KISK-IESDAFSWLGHLEVLD 411 (680)
T ss_dssp -------------------------SCC------CEECTTTTGGGTTSCCCEEECTTS-CCCE-ECTTTTTTCTTCCEEE
T ss_pred -------------------------hhh------hhcchhhhcccccCcCceEECCCC-CCCe-EChhhhhCCCCCCEEe
Confidence 100 00000 011 1134444444444 2221 1223334444444444
Q ss_pred ccCCCCcCchhhHhhhhccccceeeecCccccCch-HHHhccccccEEecccccccchh--hHHHHHhcCCCCCccEEeC
Q 003270 559 LMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLE-PVFESCLQLKVLKLQACKYLTNT--SLESLYKKGSLPALQELDL 635 (835)
Q Consensus 559 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~--~~~~l~~~~~~~~L~~L~l 635 (835)
+++|...+......+..+++|++|++++|.+.+++ ..+..+++|++|++++|. ++.. .+.. +..+++|+.|++
T Consensus 412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~p~~---~~~l~~L~~L~L 487 (680)
T 1ziw_A 412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVA-LKNVDSSPSP---FQPLRNLTILDL 487 (680)
T ss_dssp CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSC-CBCTTCSSCT---TTTCTTCCEEEC
T ss_pred CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcccc-ccccccCCcc---cccCCCCCEEEC
Confidence 44444332221234444555555555555544432 244445555555555544 3211 1111 244555555555
Q ss_pred CCcccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCC
Q 003270 636 SYGTLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGC 715 (835)
Q Consensus 636 ~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~ 715 (835)
++|++++ ..+..+..+++|++|++++|. +..++.+..+..
T Consensus 488 s~N~l~~-i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~-------------------------------------- 527 (680)
T 1ziw_A 488 SNNNIAN-INDDMLEGLEKLEILDLQHNN-LARLWKHANPGG-------------------------------------- 527 (680)
T ss_dssp CSSCCCC-CCTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTS--------------------------------------
T ss_pred CCCCCCc-CChhhhccccccCEEeCCCCC-ccccchhhccCC--------------------------------------
Confidence 5555543 233344555555555555553 111100000000
Q ss_pred CCccccccCcccccCccceEeccCCC--Cccc-cccccccccEEecccccchhhhh----hcCCccceeecccCcCChhH
Q 003270 716 PNIRKVFIPPQARCFHLSSLNLSLSA--NLKE-VDVACFNLCFLNLSNCCSLETLK----LDCPKLTSLFLQSCNIDEEG 788 (835)
Q Consensus 716 ~~l~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~~~i~~~~ 788 (835)
....+..+++|+.|+++++. .++. .+..+++|++|+++++. ++.++ ..+++|+.|++++|.++ ..
T Consensus 528 ------~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~L~L~~N~l~-~~ 599 (680)
T 1ziw_A 528 ------PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNN-LNTLPASVFNNQVSLKSLNLQKNLIT-SV 599 (680)
T ss_dssp ------CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECTTSCCC-BC
T ss_pred ------cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCC-CCcCCHhHhCCCCCCCEEECCCCcCC-cc
Confidence 00012233333333333321 1111 11234555555555543 34444 24688999999999976 33
Q ss_pred HHHHHh-cCCCcceeecccccCCCchH
Q 003270 789 VESAIT-QCGMLETLDVRFCPKICSTS 814 (835)
Q Consensus 789 l~~~~~-~~~~L~~l~l~~c~~l~~~~ 814 (835)
.+..+. .+++|+.+++++||..|++.
T Consensus 600 ~~~~~~~~~~~L~~l~l~~N~~~c~c~ 626 (680)
T 1ziw_A 600 EKKVFGPAFRNLTELDMRFNPFDCTCE 626 (680)
T ss_dssp CHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred ChhHhcccccccCEEEccCCCcccCCc
Confidence 355566 78899999999999888865
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=387.48 Aligned_cols=563 Identities=19% Similarity=0.134 Sum_probs=368.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 202 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~ 202 (835)
+++++|++++|.+.+..+..|+++++|++|++++|.+++..|..+.++++|++|++++|.+..+.
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~--------------- 89 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLS--------------- 89 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCC---------------
T ss_pred CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccC---------------
Confidence 57888888888888777777888888888888888887777777777777777777776655332
Q ss_pred hHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCcc-
Q 003270 203 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLE- 279 (835)
Q Consensus 203 i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~- 279 (835)
...++.+++|++|++++| .+.. ..+..++++++|++|++++|. +++..+..+. ++++|++|++++|. .++..
T Consensus 90 -~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 164 (680)
T 1ziw_A 90 -DKTFAFCTNLTELHLMSN-SIQK-IKNNPFVKQKNLITLDLSHNG-LSSTKLGTQV-QLENLQELLLSNNKIQALKSEE 164 (680)
T ss_dssp -TTTTTTCTTCSEEECCSS-CCCC-CCSCTTTTCTTCCEEECCSSC-CSCCCCCSSS-CCTTCCEEECCSSCCCCBCHHH
T ss_pred -hhhhccCCCCCEEECCCC-ccCc-cChhHccccCCCCEEECCCCc-ccccCchhhc-ccccCCEEEccCCcccccCHHH
Confidence 124677888888888887 3542 113467899999999999998 6655444444 78999999999986 33332
Q ss_pred --ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceee
Q 003270 280 --SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIM 357 (835)
Q Consensus 280 --~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~ 357 (835)
...+++|++|++++| .+.+..+..+..+.+|+.|++.++.+.......++ .
T Consensus 165 ~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~--------------------------~ 217 (680)
T 1ziw_A 165 LDIFANSSLKKLELSSN-QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC--------------------------L 217 (680)
T ss_dssp HGGGTTCEESEEECTTC-CCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHH--------------------------H
T ss_pred hhccccccccEEECCCC-cccccChhhhhhhhhhhhhhccccccChhhHHHHH--------------------------H
Confidence 235689999999997 78887788889999999999998875432211110 0
Q ss_pred eccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccc
Q 003270 358 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 437 (835)
Q Consensus 358 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 437 (835)
....++|+.|++++|.+++..+..+..+ ..++|++|++++ +.+++..+..+ ..+++|++|+++++. +..+
T Consensus 218 ~l~~~~L~~L~L~~n~l~~~~~~~~~~l-----~~~~L~~L~Ls~-n~l~~~~~~~~---~~l~~L~~L~L~~n~-l~~~ 287 (680)
T 1ziw_A 218 ELANTSIRNLSLSNSQLSTTSNTTFLGL-----KWTNLTMLDLSY-NNLNVVGNDSF---AWLPQLEYFFLEYNN-IQHL 287 (680)
T ss_dssp HHTTSCCCEEECTTSCCCEECTTTTGGG-----GGSCCCEEECTT-SCCCEECTTTT---TTCTTCCEEECCSCC-BSEE
T ss_pred HhhhccccEEEccCCcccccChhHhhcc-----CcCCCCEEECCC-CCcCccCcccc---cCcccccEeeCCCCc-cCcc
Confidence 0123556666666666665543333332 123477777777 46666555555 566777777777664 3322
Q ss_pred cccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccc--cccccccccccCcCCCCcccccccceeEEEeecCC
Q 003270 438 RFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESAS--FVPVALQSLNLGICPKLSTLGIEALHMVVLELKGC 515 (835)
Q Consensus 438 ~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~--~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~ 515 (835)
.. .....+++|+.+++.++..-.... .+| .+....+..+++|+.+++++|.+.
T Consensus 288 ~~-----------------~~~~~l~~L~~L~L~~~~~~~~~~~~~lp-~i~~~~~~~l~~L~~L~l~~n~l~------- 342 (680)
T 1ziw_A 288 FS-----------------HSLHGLFNVRYLNLKRSFTKQSISLASLP-KIDDFSFQWLKCLEHLNMEDNDIP------- 342 (680)
T ss_dssp CT-----------------TTTTTCTTCCEEECTTCBCCC------CC-EECTTTTTTCTTCCEEECCSCCBC-------
T ss_pred Ch-----------------hhhcCCCCccEEeccchhhhccccccccc-ccChhhcccCCCCCEEECCCCccC-------
Confidence 10 001124455555554432111100 111 233334777888888888888875
Q ss_pred cccccccccCCCcceEecccCCCCccchhhh-hhh--cCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSA-TTT--SCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN- 591 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~-~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~- 591 (835)
+..+..+..+++|++|++++|. +....++. .+. ..++|+.|++++|...+. .+..+..+++|+.|++++|.+.+
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~-~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~ 420 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSF-TSLRTLTNETFVSLAHSPLHILNLTKNKISKI-ESDAFSWLGHLEVLDLGLNEIGQE 420 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCB-SCCCEECTTTTGGGTTSCCCEEECTTSCCCEE-CTTTTTTCTTCCEEECCSSCCEEE
T ss_pred CCChhHhccccCCcEEECCCCc-hhhhhcchhhhcccccCcCceEECCCCCCCeE-ChhhhhCCCCCCEEeCCCCcCccc
Confidence 5556667888888888888873 22222221 122 235788888888775433 35667778888888888887764
Q ss_pred ch-HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchH-HHHHHHhhCCCccEEEccCCCCCccc
Q 003270 592 LE-PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS-AIEELLAYCTHLTHVSLNGCGNMHDL 669 (835)
Q Consensus 592 l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~ 669 (835)
++ ..+.++++|++|++++|+ +++..+..+ ..+++|+.|++++|.+... .++..+..+++|++|++++|. +.
T Consensus 421 ~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~---~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~-l~-- 493 (680)
T 1ziw_A 421 LTGQEWRGLENIFEIYLSYNK-YLQLTRNSF---ALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNN-IA-- 493 (680)
T ss_dssp CCSGGGTTCTTCCEEECCSCS-EEECCTTTT---TTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSC-CC--
T ss_pred cCcccccCcccccEEecCCCC-cceeChhhh---hcCcccccchhccccccccccCCcccccCCCCCEEECCCCC-CC--
Confidence 44 467777888888888877 665544443 5677788888887776521 345566777777777777764 21
Q ss_pred cccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCCcccc---
Q 003270 670 NWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEV--- 746 (835)
Q Consensus 670 ~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~--- 746 (835)
.+....+..+++|+.|+++++. ++.+
T Consensus 494 --------------------------------------------------~i~~~~~~~l~~L~~L~Ls~N~-l~~~~~~ 522 (680)
T 1ziw_A 494 --------------------------------------------------NINDDMLEGLEKLEILDLQHNN-LARLWKH 522 (680)
T ss_dssp --------------------------------------------------CCCTTTTTTCTTCCEEECCSSC-CGGGGST
T ss_pred --------------------------------------------------cCChhhhccccccCEEeCCCCC-ccccchh
Confidence 1111124455666666666542 2221
Q ss_pred ---------ccccccccEEecccccchhhhh----hcCCccceeecccCcCChhHHH-HHHhcCCCcceeecccccCCCc
Q 003270 747 ---------DVACFNLCFLNLSNCCSLETLK----LDCPKLTSLFLQSCNIDEEGVE-SAITQCGMLETLDVRFCPKICS 812 (835)
Q Consensus 747 ---------~~~~~~L~~L~l~~c~~l~~l~----~~~~~L~~L~l~~~~i~~~~l~-~~~~~~~~L~~l~l~~c~~l~~ 812 (835)
...+++|++|+++++. ++.+| ..+++|++|++++|.++ .+| ..|..+++|++|++++| .+..
T Consensus 523 ~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~--~l~~~~~~~l~~L~~L~L~~N-~l~~ 598 (680)
T 1ziw_A 523 ANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVFKDLFELKIIDLGLNNLN--TLPASVFNNQVSLKSLNLQKN-LITS 598 (680)
T ss_dssp TSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECTTS-CCCB
T ss_pred hccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHcccccCcceeECCCCCCC--cCCHhHhCCCCCCCEEECCCC-cCCc
Confidence 3467999999999985 55665 35799999999999986 444 45789999999999998 4666
Q ss_pred hHHHHHHHhCCcchhhhcc
Q 003270 813 TSMGRLRAACPSLKRIFSS 831 (835)
Q Consensus 813 ~~~~~~~~~~p~l~~l~~~ 831 (835)
.....+...+++|+++.++
T Consensus 599 ~~~~~~~~~~~~L~~l~l~ 617 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMR 617 (680)
T ss_dssp CCHHHHHHHHTTCSEEECT
T ss_pred cChhHhcccccccCEEEcc
Confidence 5555554467788777553
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-39 Score=369.52 Aligned_cols=524 Identities=18% Similarity=0.116 Sum_probs=273.7
Q ss_pred CeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEec
Q 003270 99 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 178 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 178 (835)
++++|++++ +.+....+.+|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+.+..|..+.++++|++|++
T Consensus 34 ~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 34 STECLEFSF-NVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp TCCEEECTT-CCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEEC
T ss_pred cCcEEEccC-CccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeec
Confidence 567777777 4566555666777777777777777777666677777777777777777776656666666666666666
Q ss_pred cCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHH
Q 003270 179 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREI 258 (835)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 258 (835)
++|.+..+. ...++.+++|++|++++| .+.....+.. ..+++|++|++++|. ++...+..+
T Consensus 113 ~~n~i~~l~----------------~~~~~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~ 173 (606)
T 3t6q_A 113 IQTGISSID----------------FIPLHNQKTLESLYLGSN-HISSIKLPKG-FPTEKLKVLDFQNNA-IHYLSKEDM 173 (606)
T ss_dssp TTSCCSCGG----------------GSCCTTCTTCCEEECCSS-CCCCCCCCTT-CCCTTCCEEECCSSC-CCEECHHHH
T ss_pred cccCcccCC----------------cchhccCCcccEEECCCC-cccccCcccc-cCCcccCEEEcccCc-ccccChhhh
Confidence 666554431 023456666777777776 3442122222 337778888888877 665555555
Q ss_pred HHhCCCCc--EEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccce
Q 003270 259 ALSCANLR--ILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQN 334 (835)
Q Consensus 259 ~~~~~~L~--~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 334 (835)
. .+++|+ .|++++|. .+++......+|++|++.++. ..+..+..+.++....+.
T Consensus 174 ~-~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~----~~~~~~~~l~~~~l~~l~----------------- 231 (606)
T 3t6q_A 174 S-SLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ----NLLVIFKGLKNSTIQSLW----------------- 231 (606)
T ss_dssp H-TTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCS----CHHHHHHHTTTCEEEEEE-----------------
T ss_pred h-hhcccceeEEecCCCccCccChhHhhhccccccccCCch----hHHHHhhhccccchhhee-----------------
Confidence 5 777777 77777765 333334444566666666652 122233333332222211
Q ss_pred eeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhc
Q 003270 335 IRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVF 414 (835)
Q Consensus 335 L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~ 414 (835)
+..+..+....+....+.+ + .-.++++|++++ +.+++..+..+
T Consensus 232 -----------------------~~~~~~~~~~~i~~~~~~~--------l-----~~~~L~~L~l~~-n~l~~~~~~~~ 274 (606)
T 3t6q_A 232 -----------------------LGTFEDMDDEDISPAVFEG--------L-----CEMSVESINLQK-HYFFNISSNTF 274 (606)
T ss_dssp -----------------------CCCCTTSCCCCCCGGGGGG--------G-----GGSEEEEEECTT-CCCSSCCTTTT
T ss_pred -----------------------chhhccccccccChhHhch--------h-----hcCceeEEEeec-CccCccCHHHh
Confidence 1111111111121111111 1 012677777777 47766655555
Q ss_pred cCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcC
Q 003270 415 SDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGIC 494 (835)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~ 494 (835)
..+++|++|+++++. ++.++ .. +..+
T Consensus 275 ---~~l~~L~~L~l~~n~-l~~lp---------------------------------------------~~-----l~~l 300 (606)
T 3t6q_A 275 ---HCFSGLQELDLTATH-LSELP---------------------------------------------SG-----LVGL 300 (606)
T ss_dssp ---TTCTTCSEEECTTSC-CSCCC---------------------------------------------SS-----CCSC
T ss_pred ---ccccCCCEEeccCCc-cCCCC---------------------------------------------hh-----hccc
Confidence 667777777777764 33221 11 2333
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchh-hHhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG-LYSL 573 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~ 573 (835)
++|+.+++++|.+. +..|..+..+++|++|++++|. +.....+..+..+++|++|++++|....... +..+
T Consensus 301 ~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 372 (606)
T 3t6q_A 301 STLKKLVLSANKFE-------NLCQISASNFPSLTHLSIKGNT-KRLELGTGCLENLENLRELDLSHDDIETSDCCNLQL 372 (606)
T ss_dssp TTCCEEECTTCCCS-------BGGGGCGGGCTTCSEEECCSCS-SCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTT
T ss_pred ccCCEEECccCCcC-------cCchhhhhccCcCCEEECCCCC-cccccchhhhhccCcCCEEECCCCccccccCcchhc
Confidence 34444444444332 2223344445555555555542 2211111224445555555555544322110 2234
Q ss_pred hhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhC
Q 003270 574 RSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC 652 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~ 652 (835)
..+++|++|++++|.+.++ +..+..+++|++|++++|+ +++..+.. .+..+++|+.|++++|.+.+ ..+..+..+
T Consensus 373 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l 448 (606)
T 3t6q_A 373 RNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTR-LKVKDAQS--PFQNLHLLKVLNLSHSLLDI-SSEQLFDGL 448 (606)
T ss_dssp TTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCC-EECCTTCC--TTTTCTTCCEEECTTCCCBT-TCTTTTTTC
T ss_pred ccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCc-CCCcccch--hhhCcccCCEEECCCCccCC-cCHHHHhCC
Confidence 4555555555555555543 2345555555555555554 43332221 12445555555555555544 234444555
Q ss_pred CCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCcc
Q 003270 653 THLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHL 732 (835)
Q Consensus 653 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L 732 (835)
++|++|++++|....... . ....+..+++|
T Consensus 449 ~~L~~L~L~~n~l~~~~~----~----------------------------------------------~~~~~~~l~~L 478 (606)
T 3t6q_A 449 PALQHLNLQGNHFPKGNI----Q----------------------------------------------KTNSLQTLGRL 478 (606)
T ss_dssp TTCCEEECTTCBCGGGEE----C----------------------------------------------SSCGGGGCTTC
T ss_pred CCCCEEECCCCCCCcccc----c----------------------------------------------cchhhccCCCc
Confidence 555555555553110000 0 00012223333
Q ss_pred ceEeccCCCCcc---ccccccccccEEecccccchhhhh---hcCCccceeecccCcCChhHHHHHHhcCCCcceeeccc
Q 003270 733 SSLNLSLSANLK---EVDVACFNLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRF 806 (835)
Q Consensus 733 ~~L~l~~~~~l~---~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~ 806 (835)
+.|+++++.--. .....+++|++|++++|.--...+ ..+++| .|++++|+++ ...|..+..+++|++|++++
T Consensus 479 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 479 EILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS-IILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC-CCCGGGHHHHHTSSEEECTT
T ss_pred cEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc-ccCHhhcccCCCCCEEeCCC
Confidence 344443321111 111234556666666654322223 246788 9999999987 44566788899999999999
Q ss_pred ccCCCchHHHHHH
Q 003270 807 CPKICSTSMGRLR 819 (835)
Q Consensus 807 c~~l~~~~~~~~~ 819 (835)
||..|++....+.
T Consensus 557 N~~~c~c~~~~~~ 569 (606)
T 3t6q_A 557 NPLDCTCSNIYFL 569 (606)
T ss_dssp CCEECSGGGHHHH
T ss_pred CCccccCCcHHHH
Confidence 9999998755544
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-39 Score=375.32 Aligned_cols=526 Identities=16% Similarity=0.111 Sum_probs=288.6
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|++++ +.+.+..+..|..+++|++|++++|.+++..|.+|+++++|++|++++|.+++..|..+.++++|++|+
T Consensus 32 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 32 SSTKNIDLSF-NPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TTCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CCcCEEECCC-CCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 4567777777 455555555666777777777777777666666677777777777777776665566666666666666
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+. ...++.+++|++|++++| .+....+|..++++++|++|++++|. +++..+..
T Consensus 111 L~~n~l~~~~----------------~~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 172 (606)
T 3vq2_A 111 AVETKLASLE----------------SFPIGQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNY-IQTITVND 172 (606)
T ss_dssp CTTSCCCCSS----------------SSCCTTCTTCCEEECCSS-CCCCCCCCGGGGTCTTCCEEECCSSC-CCEECTTT
T ss_pred ccCCcccccc----------------ccccCCCCCCCEEeCCCC-cccceechHhHhhcCCCCEEEccCCc-ceecChhh
Confidence 6666554322 023566777888888877 45433456677888888888888887 66543332
Q ss_pred HH--HhCCC-CcEEecCCCC--CCCccccCCCCCcEEecCCCCCCC-hhhHHHhhhccCccEEEccCCCccccccccCcc
Q 003270 258 IA--LSCAN-LRILNSSYCP--NISLESVRLPMLTVLQLHSCEGIT-SASMAAISHSYMLEVLELDNCNLLTSVSLELPR 331 (835)
Q Consensus 258 ~~--~~~~~-L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 331 (835)
+. .+++. ++.|++++|. .++.......+|++|+++++ .+. +..+..+..+++|+.+++....+.+. ..
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-----~~ 246 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGN-FNSSNIMKTCLQNLAGLHVHRLILGEFKDE-----RN 246 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESC-CSCHHHHHHHHHTTTTCEEEEEEEECCTTS-----CC
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCC-ccchhHHHHHhccccccccccccccccccC-----Cc
Confidence 22 13333 5588888886 45555555558888888887 444 55666777888888777654322110 00
Q ss_pred cceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhh
Q 003270 332 LQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC 411 (835)
Q Consensus 332 L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~ 411 (835)
+..+ .+ ....++. .-.++.+++..++.+++..+
T Consensus 247 l~~~---------------------------------------~~---~~~~~l~-----~l~l~~l~l~~~~~~~~~~~ 279 (606)
T 3vq2_A 247 LEIF---------------------------------------EP---SIMEGLC-----DVTIDEFRLTYTNDFSDDIV 279 (606)
T ss_dssp CSCC---------------------------------------CG---GGGTTGG-----GSEEEEEEECCCTTCCGGGG
T ss_pred cccc---------------------------------------Ch---HHhhhhh-----hccHhheecccccccccccc
Confidence 0000 00 0001111 01455666655466666555
Q ss_pred hhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccccccccccccc
Q 003270 412 EVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNL 491 (835)
Q Consensus 412 ~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l 491 (835)
. + ..+++|+.|++.++. +..++ .+
T Consensus 280 ~-~---~~l~~L~~L~l~~~~-~~~l~---------------------------------------------------~l 303 (606)
T 3vq2_A 280 K-F---HCLANVSAMSLAGVS-IKYLE---------------------------------------------------DV 303 (606)
T ss_dssp S-C---GGGTTCSEEEEESCC-CCCCC---------------------------------------------------CC
T ss_pred c-c---ccCCCCCEEEecCcc-chhhh---------------------------------------------------hc
Confidence 4 3 566777777777664 22211 02
Q ss_pred CcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCch-hh
Q 003270 492 GICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD-GL 570 (835)
Q Consensus 492 ~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~ 570 (835)
..+++|+.+++++|.+ +.+|. + .+++|++|++++|..+.. . .+..+++|++|++++|...... .+
T Consensus 304 ~~~~~L~~L~l~~n~l--------~~lp~-~-~l~~L~~L~l~~n~~~~~--~--~~~~l~~L~~L~ls~n~l~~~~~~~ 369 (606)
T 3vq2_A 304 PKHFKWQSLSIIRCQL--------KQFPT-L-DLPFLKSLTLTMNKGSIS--F--KKVALPSLSYLDLSRNALSFSGCCS 369 (606)
T ss_dssp CTTCCCSEEEEESCCC--------SSCCC-C-CCSSCCEEEEESCSSCEE--C--CCCCCTTCCEEECCSSCEEEEEECC
T ss_pred cccccCCEEEcccccC--------ccccc-C-CCCccceeeccCCcCccc--h--hhccCCCCCEEECcCCccCCCcchh
Confidence 2233333333333333 33331 2 445555555555432211 1 2334555555555555432211 13
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++|++|++++|.+.++|..+..+++|++|++++|+ +++..+.. .+..+++|+.|++++|.+.+ ..+..+.
T Consensus 370 ~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~--~~~~l~~L~~L~l~~n~l~~-~~~~~~~ 445 (606)
T 3vq2_A 370 YSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHST-LKRVTEFS--AFLSLEKLLYLDISYTNTKI-DFDGIFL 445 (606)
T ss_dssp HHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSE-EESTTTTT--TTTTCTTCCEEECTTSCCEE-CCTTTTT
T ss_pred hhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCc-cCCccChh--hhhccccCCEEECcCCCCCc-cchhhhc
Confidence 34555555555555555555555555555555555555555 44333211 12445555555555555544 3344455
Q ss_pred hCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccC
Q 003270 651 YCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCF 730 (835)
Q Consensus 651 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~ 730 (835)
.+++|++|++++|...... ....++.++
T Consensus 446 ~l~~L~~L~l~~n~l~~~~----------------------------------------------------~~~~~~~l~ 473 (606)
T 3vq2_A 446 GLTSLNTLKMAGNSFKDNT----------------------------------------------------LSNVFANTT 473 (606)
T ss_dssp TCTTCCEEECTTCEEGGGE----------------------------------------------------ECSCCTTCT
T ss_pred CCCCCCEEECCCCcCCCcc----------------------------------------------------hHHhhccCC
Confidence 5555555555555311000 000122233
Q ss_pred ccceEeccCCCCcc---ccccccccccEEecccccchhhhh---hcCCccceeecccCcCChhHHHHHHhcCC-Ccceee
Q 003270 731 HLSSLNLSLSANLK---EVDVACFNLCFLNLSNCCSLETLK---LDCPKLTSLFLQSCNIDEEGVESAITQCG-MLETLD 803 (835)
Q Consensus 731 ~L~~L~l~~~~~l~---~~~~~~~~L~~L~l~~c~~l~~l~---~~~~~L~~L~l~~~~i~~~~l~~~~~~~~-~L~~l~ 803 (835)
+|+.|+++++.-.. .....+++|++|++++|.-....| ..+++|++|++++|+++ .+|..+..++ +|++|+
T Consensus 474 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~--~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 474 NLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE--TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC--CEESCGGGSCTTCCEEE
T ss_pred CCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc--ccCHhHhhhcccCcEEE
Confidence 33333333331111 111234555555665554222222 24688999999999985 6776688887 699999
Q ss_pred cccccCCCchHHHHHHHhCC
Q 003270 804 VRFCPKICSTSMGRLRAACP 823 (835)
Q Consensus 804 l~~c~~l~~~~~~~~~~~~p 823 (835)
+++||..|++....+.+-..
T Consensus 552 l~~N~~~c~c~~~~~~~~l~ 571 (606)
T 3vq2_A 552 LTNNSVACICEHQKFLQWVK 571 (606)
T ss_dssp CCSCCCCCSSTTHHHHTTTT
T ss_pred ccCCCcccCCccHHHHHHHH
Confidence 99999999988877765443
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=368.43 Aligned_cols=502 Identities=17% Similarity=0.159 Sum_probs=354.1
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
..+.+++++..++.. ....+..++++++|++++ +.+....+.+|..+++|++|++++|.+.+..|.+|+.+++|++|+
T Consensus 34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTR-CQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred cCcEEEccCCccCcC-ChhHhccCccceEEECCC-CccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 445666666544321 123467889999999999 567777788899999999999999999998899999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCccccccc----cCCCCCcEEEecccchH----HHhhcCCCCc--EEeecCCCC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSNMA----QAVLNCPLLH--LLDIASCHK 223 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~L~~L~l~~~~i~----~~~~~~~~L~--~L~l~~~~~ 223 (835)
+++|.+++..+..+.++++|++|++++|.+..+. ..+++|++|++++|.+. ..++.+++|+ +|++++| .
T Consensus 112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n-~ 190 (606)
T 3t6q_A 112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGN-D 190 (606)
T ss_dssp CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTC-C
T ss_pred ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCC-c
Confidence 9999998766777899999999999999887642 24788888888888765 5677888888 7888887 3
Q ss_pred CCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC--cEEecCCCCC-----CCc-cccCC--CCCcEEecCC
Q 003270 224 LSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL--RILNSSYCPN-----ISL-ESVRL--PMLTVLQLHS 293 (835)
Q Consensus 224 l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L--~~L~l~~~~~-----l~~-~~~~~--~~L~~L~l~~ 293 (835)
+.. ++.......+|++|++++|.. .+..+. .+.++ +.+.+..... ++. .+..+ .+|++|++++
T Consensus 191 l~~--~~~~~~~~~~L~~L~l~~~~~----~~~~~~-~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~ 263 (606)
T 3t6q_A 191 IAG--IEPGAFDSAVFQSLNFGGTQN----LLVIFK-GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQK 263 (606)
T ss_dssp CCE--ECTTTTTTCEEEEEECTTCSC----HHHHHH-HTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTT
T ss_pred cCc--cChhHhhhccccccccCCchh----HHHHhh-hccccchhheechhhccccccccChhHhchhhcCceeEEEeec
Confidence 442 222334446788888888862 122222 44444 3344433221 111 11111 1455555555
Q ss_pred CCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCc
Q 003270 294 CEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNS 373 (835)
Q Consensus 294 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~ 373 (835)
+ .+.+..+..++.+++|++|++++|.+. .+|. .+..+++|++|++++|.
T Consensus 264 n-~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~-----------------------------~l~~l~~L~~L~l~~n~ 312 (606)
T 3t6q_A 264 H-YFFNISSNTFHCFSGLQELDLTATHLS-ELPS-----------------------------GLVGLSTLKKLVLSANK 312 (606)
T ss_dssp C-CCSSCCTTTTTTCTTCSEEECTTSCCS-CCCS-----------------------------SCCSCTTCCEEECTTCC
T ss_pred C-ccCccCHHHhccccCCCEEeccCCccC-CCCh-----------------------------hhcccccCCEEECccCC
Confidence 4 444444444555555666666555432 2221 35567778888888887
Q ss_pred cccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhh-hhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCC
Q 003270 374 LQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVC-EVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGC 452 (835)
Q Consensus 374 l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~-~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~ 452 (835)
+++..+.... .+++|++|++++| .+.+..+ ..+ ..+++|++|++++|. ++.+...
T Consensus 313 l~~~~~~~~~-------~l~~L~~L~l~~n-~~~~~~~~~~~---~~l~~L~~L~l~~n~-l~~~~~~------------ 368 (606)
T 3t6q_A 313 FENLCQISAS-------NFPSLTHLSIKGN-TKRLELGTGCL---ENLENLRELDLSHDD-IETSDCC------------ 368 (606)
T ss_dssp CSBGGGGCGG-------GCTTCSEEECCSC-SSCCBCCSSTT---TTCTTCCEEECCSSC-CCEEEES------------
T ss_pred cCcCchhhhh-------ccCcCCEEECCCC-Ccccccchhhh---hccCcCCEEECCCCc-cccccCc------------
Confidence 7765433222 4578888888884 5554332 234 677888888888875 4322100
Q ss_pred cccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCccccc-ccccCCCcceE
Q 003270 453 RAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSD-AYINCPLLTSL 531 (835)
Q Consensus 453 ~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~-~~~~~~~L~~L 531 (835)
......+++|++++++++.-.. ..|.. +..+++|+.+++++|.+. +..+. .+..+++|++|
T Consensus 369 ---~~~~~~l~~L~~L~l~~n~l~~---~~~~~-----~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L~~L 430 (606)
T 3t6q_A 369 ---NLQLRNLSHLQSLNLSYNEPLS---LKTEA-----FKECPQLELLDLAFTRLK-------VKDAQSPFQNLHLLKVL 430 (606)
T ss_dssp ---TTTTTTCTTCCEEECCSCSCEE---ECTTT-----TTTCTTCSEEECTTCCEE-------CCTTCCTTTTCTTCCEE
T ss_pred ---chhcccCCCCCEEECCCCcCCc---CCHHH-----hcCCccCCeEECCCCcCC-------CcccchhhhCcccCCEE
Confidence 0011245677777777754211 12222 778899999999999886 44443 48899999999
Q ss_pred ecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchh--hHhhhhccccceeeecCccccCc-hHHHhccccccEEecc
Q 003270 532 DASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG--LYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQ 608 (835)
Q Consensus 532 ~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~ 608 (835)
++++|. +. +..+..+..+++|++|++++|+..+... +..+..+++|++|++++|.++++ |..+..+++|++|+++
T Consensus 431 ~l~~n~-l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls 508 (606)
T 3t6q_A 431 NLSHSL-LD-ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLS 508 (606)
T ss_dssp ECTTCC-CB-TTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred ECCCCc-cC-CcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECC
Confidence 999984 43 3456668899999999999998765321 25688999999999999999986 5689999999999999
Q ss_pred cccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCC
Q 003270 609 ACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 609 ~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
+|+ +++..+..+ ..++.| .|++++|++++ ..+..+..+++|++|++++|+-.
T Consensus 509 ~N~-l~~~~~~~l---~~l~~L-~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~~ 560 (606)
T 3t6q_A 509 HNR-LTSSSIEAL---SHLKGI-YLNLASNHISI-ILPSLLPILSQQRTINLRQNPLD 560 (606)
T ss_dssp SSC-CCGGGGGGG---TTCCSC-EEECCSSCCCC-CCGGGHHHHHTSSEEECTTCCEE
T ss_pred CCc-cCcCChhHh---Cccccc-EEECcCCcccc-cCHhhcccCCCCCEEeCCCCCcc
Confidence 998 988877765 788999 99999999987 56777889999999999999843
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-36 Score=348.52 Aligned_cols=500 Identities=15% Similarity=0.097 Sum_probs=353.7
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
..+.+++++..++.. ....++.++++++|++++ +.+....+.+|..+++|++|++++|.+.+..|.+|+++++|++|+
T Consensus 33 ~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~-n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 110 (606)
T 3vq2_A 33 STKNIDLSFNPLKIL-KSYSFSNFSELQWLDLSR-CEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLV 110 (606)
T ss_dssp TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEE
T ss_pred CcCEEECCCCCcCEe-ChhhccCCccCcEEeCCC-CcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEE
Confidence 345566665443321 112456788999999999 577777778899999999999999999998899999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCccccc--c---ccCCCCCcEEEecccchH----HHhhcCCC----CcEEeecC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMR--V---SIRCPQLEHLSLKRSNMA----QAVLNCPL----LHLLDIAS 220 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~---~~~l~~L~~L~l~~~~i~----~~~~~~~~----L~~L~l~~ 220 (835)
+++|.+.+..+..++++++|++|++++|.+.. + ..++++|++|++++|.+. ..++.+++ +++|++++
T Consensus 111 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~ 190 (606)
T 3vq2_A 111 AVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190 (606)
T ss_dssp CTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred ccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence 99999987776789999999999999998864 2 347999999999999876 23334433 45899999
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC-----CCC---c-cccCC--CCCcEE
Q 003270 221 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-----NIS---L-ESVRL--PMLTVL 289 (835)
Q Consensus 221 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-----~l~---~-~~~~~--~~L~~L 289 (835)
|. ++ .++.......+|++|++++|. +.+........+++.++.+++.... .++ . .+..+ -.++.+
T Consensus 191 n~-l~--~~~~~~~~~~~L~~L~L~~n~-~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 266 (606)
T 3vq2_A 191 NP-ID--FIQDQAFQGIKLHELTLRGNF-NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266 (606)
T ss_dssp CC-CC--EECTTTTTTCEEEEEEEESCC-SCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEE
T ss_pred CC-cc--eeCcccccCceeeeeeccCCc-cchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhhe
Confidence 84 55 234333444589999999998 6655555545589999988875432 111 0 00111 134445
Q ss_pred ecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeee
Q 003270 290 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINI 369 (835)
Q Consensus 290 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l 369 (835)
++..+..+.+..+. +..+++|++|+++++.+. .+| .+..+++|++|++
T Consensus 267 ~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~------------------------------~l~~~~~L~~L~l 314 (606)
T 3vq2_A 267 RLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE------------------------------DVPKHFKWQSLSI 314 (606)
T ss_dssp EECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC------------------------------CCCTTCCCSEEEE
T ss_pred eccccccccccccc-cccCCCCCEEEecCccch-hhh------------------------------hccccccCCEEEc
Confidence 55333344444443 555666666666665431 111 2455667777777
Q ss_pred ccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEec
Q 003270 370 TSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSL 449 (835)
Q Consensus 370 ~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l 449 (835)
++|.++... .. .+++|++|++++|..+... . ...+++|++|++++|. ++.+..
T Consensus 315 ~~n~l~~lp--~~--------~l~~L~~L~l~~n~~~~~~---~---~~~l~~L~~L~ls~n~-l~~~~~---------- 367 (606)
T 3vq2_A 315 IRCQLKQFP--TL--------DLPFLKSLTLTMNKGSISF---K---KVALPSLSYLDLSRNA-LSFSGC---------- 367 (606)
T ss_dssp ESCCCSSCC--CC--------CCSSCCEEEEESCSSCEEC---C---CCCCTTCCEEECCSSC-EEEEEE----------
T ss_pred ccccCcccc--cC--------CCCccceeeccCCcCccch---h---hccCCCCCEEECcCCc-cCCCcc----------
Confidence 777763221 11 3577888888775333221 2 2567788888887775 332210
Q ss_pred cCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccc-cccccCCCc
Q 003270 450 VGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLL 528 (835)
Q Consensus 450 ~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~-~~~~~~~~L 528 (835)
.......+++|+++++++|. +.. +|.. +..+++|+.+++++|.+. +..+ ..+..+++|
T Consensus 368 -----~~~~~~~~~~L~~L~L~~n~-l~~---~~~~-----~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 368 -----CSYSDLGTNSLRHLDLSFNG-AII---MSAN-----FMGLEELQHLDFQHSTLK-------RVTEFSAFLSLEKL 426 (606)
T ss_dssp -----CCHHHHCCSCCCEEECCSCS-EEE---ECCC-----CTTCTTCCEEECTTSEEE-------STTTTTTTTTCTTC
T ss_pred -----hhhhhccCCcccEeECCCCc-ccc---chhh-----ccCCCCCCeeECCCCccC-------CccChhhhhccccC
Confidence 01111245667777776654 221 2222 778899999999999886 5555 578899999
Q ss_pred ceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCc-hHHHhccccccEEec
Q 003270 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKL 607 (835)
Q Consensus 529 ~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l 607 (835)
++|++++|. +. +..+..+..+++|++|++++|...+...+..+..+++|++|++++|.++++ |..+..+++|++|++
T Consensus 427 ~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 504 (606)
T 3vq2_A 427 LYLDISYTN-TK-IDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNM 504 (606)
T ss_dssp CEEECTTSC-CE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEECcCCC-CC-ccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEEC
Confidence 999999984 43 345667889999999999999876543467789999999999999999985 457899999999999
Q ss_pred ccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC-CccEEEccCCCCCc
Q 003270 608 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT-HLTHVSLNGCGNMH 667 (835)
Q Consensus 608 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~ 667 (835)
++|+ +++..+..+ ..+++|+.|++++|+++. +|..+..++ +|++|++++|+-..
T Consensus 505 s~N~-l~~~~~~~~---~~l~~L~~L~l~~N~l~~--~p~~~~~l~~~L~~l~l~~N~~~c 559 (606)
T 3vq2_A 505 SHNN-LLFLDSSHY---NQLYSLSTLDCSFNRIET--SKGILQHFPKSLAFFNLTNNSVAC 559 (606)
T ss_dssp CSSC-CSCEEGGGT---TTCTTCCEEECTTSCCCC--EESCGGGSCTTCCEEECCSCCCCC
T ss_pred CCCc-CCCcCHHHc---cCCCcCCEEECCCCcCcc--cCHhHhhhcccCcEEEccCCCccc
Confidence 9998 888766665 788999999999999985 555578887 69999999998543
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=362.25 Aligned_cols=284 Identities=14% Similarity=0.116 Sum_probs=154.1
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhh-HHhhcCCCCCCEEEecCCCCCcccccccccCCcccEE
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAF-FHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 176 (835)
+++++|++++ +.+....+..|..+++|++|++++|...+.+ |.+|+++++|++|++++|.+.+..|..+.++++|++|
T Consensus 24 ~~l~~LdLs~-N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L 102 (844)
T 3j0a_A 24 NTTERLLLSF-NYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL 102 (844)
T ss_dssp TTCCEEEEES-CCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred CCcCEEECCC-CcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence 4677777777 4566555566677777777777776444444 5667777777777777777766666666666777777
Q ss_pred eccCcccccc-ccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHH
Q 003270 177 EITKCRVMRV-SIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL 255 (835)
Q Consensus 177 ~l~~~~~~~~-~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~ 255 (835)
++++|.+... ... ..+.++++|++|++++| .++....+..++++++|++|++++|. +++..+
T Consensus 103 ~Ls~n~l~~~~~~~---------------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N~-i~~~~~ 165 (844)
T 3j0a_A 103 RLYFCGLSDAVLKD---------------GYFRNLKALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSNQ-IFLVCE 165 (844)
T ss_dssp ECTTCCCSSCCSTT---------------CCCSSCSSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESSC-CCCCCS
T ss_pred eCcCCCCCcccccC---------------ccccccCCCCEEECCCC-cccccccchhHhhCCCCCEEECCCCc-CCeeCH
Confidence 7766665431 000 01344445555555554 23211112334555555555555554 332222
Q ss_pred HHHHHhC--CCCcEEecCCCC---CCCccccCCCC------CcEEecCCCCCCChhhHHHhhh---ccCccEEEccCCCc
Q 003270 256 REIALSC--ANLRILNSSYCP---NISLESVRLPM------LTVLQLHSCEGITSASMAAISH---SYMLEVLELDNCNL 321 (835)
Q Consensus 256 ~~~~~~~--~~L~~L~l~~~~---~l~~~~~~~~~------L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~ 321 (835)
..+. .+ ++|+.|++++|. ..+..++.+++ |++|++++| .+.+..+..+.. ...++.+.+..+..
T Consensus 166 ~~l~-~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 166 HELE-PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGN-GWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp GGGH-HHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSC-CSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHcc-cccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCC-cCchhHHHHHHhhcCcccccceecccccc
Confidence 2221 11 555666665554 23333333333 777777765 455444444443 24566666654322
Q ss_pred cccccccCcccceeeccccccccchhhcccccceeeecc--CCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEe
Q 003270 322 LTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSN--CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVD 399 (835)
Q Consensus 322 ~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~ 399 (835)
..... ..+++ .. ... .+.+ +++|+.|++++|.+.+..+..+. .+++|+.|+
T Consensus 244 ~~~~~--~~~l~-----------~~--~~~-----~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~ 296 (844)
T 3j0a_A 244 GAGFG--FHNIK-----------DP--DQN-----TFAGLARSSVRHLDLSHGFVFSLNSRVFE-------TLKDLKVLN 296 (844)
T ss_dssp BCSSS--CSSST-----------TG--GGT-----TTTTTTTSCCCEEECTTCCCCEECSCCSS-------SCCCCCEEE
T ss_pred ccccc--ccccC-----------CC--Chh-----hhhccccCCccEEECCCCcccccChhhhh-------cCCCCCEEE
Confidence 11100 00000 00 000 1122 36777888888877765433322 347888888
Q ss_pred cCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 400 LTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 400 l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+++ +.+++..+..+ ..+++|++|++++|.
T Consensus 297 L~~-n~i~~~~~~~~---~~l~~L~~L~Ls~N~ 325 (844)
T 3j0a_A 297 LAY-NKINKIADEAF---YGLDNLQVLNLSYNL 325 (844)
T ss_dssp EES-CCCCEECTTTT---TTCSSCCEEEEESCC
T ss_pred CCC-CcCCCCChHHh---cCCCCCCEEECCCCC
Confidence 888 57777766666 677888888888775
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-35 Score=332.78 Aligned_cols=233 Identities=16% Similarity=0.156 Sum_probs=110.8
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSN 202 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~ 202 (835)
++|++|++++|.+++..+.+|+.+++|++|++++|.+++..+..+.++++|++|++++|.+..+.
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------------- 90 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLS--------------- 90 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCC---------------
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccC---------------
Confidence 34555555555555554555555555555555555555444444444444444444444433211
Q ss_pred hHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCcc
Q 003270 203 MAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLE 279 (835)
Q Consensus 203 i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~ 279 (835)
...++.+++|++|++++| .++....+..++++++|++|++++|..++...+..+. .+++|++|++++|. ..+..
T Consensus 91 -~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~ 167 (549)
T 2z81_A 91 -SSWFGPLSSLKYLNLMGN-PYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFA-GLTSLNELEIKALSLRNYQSQS 167 (549)
T ss_dssp -HHHHTTCTTCCEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTTT
T ss_pred -HHHhccCCCCcEEECCCC-cccccchhhhhhccCCccEEECCCCccccccCHhhhh-cccccCeeeccCCcccccChhh
Confidence 122344444444444444 2221112223344455555555544422211111222 45555555555544 24445
Q ss_pred ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeec
Q 003270 280 SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVS 359 (835)
Q Consensus 280 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~ 359 (835)
+..+++|++|++..+ .........+..+++|++|++++|.+.+......+ ...
T Consensus 168 l~~l~~L~~L~l~~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~--------------------------~~~ 220 (549)
T 2z81_A 168 LKSIRDIHHLTLHLS-ESAFLLEIFADILSSVRYLELRDTNLARFQFSPLP--------------------------VDE 220 (549)
T ss_dssp TTTCSEEEEEEEECS-BSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCS--------------------------SCC
T ss_pred hhccccCceEecccC-cccccchhhHhhcccccEEEccCCccccccccccc--------------------------hhh
Confidence 556667777777665 34333333334577788888877765432100000 122
Q ss_pred cCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCC
Q 003270 360 NCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 403 (835)
Q Consensus 360 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c 403 (835)
.+++|+.+++++|.+++..+. .+......+++|+.+++++|
T Consensus 221 ~~~~L~~L~l~~n~l~~~~~~---~l~~~~~~~~~L~~l~l~~~ 261 (549)
T 2z81_A 221 VSSPMKKLAFRGSVLTDESFN---ELLKLLRYILELSEVEFDDC 261 (549)
T ss_dssp CCCCCCEEEEESCEEEHHHHH---HHHGGGGGCTTCCEEEEESC
T ss_pred hhhcccceeccccccchhHHH---HHHHHhhhhccccccccccc
Confidence 355666677776666654322 22222234556666666664
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=350.76 Aligned_cols=506 Identities=18% Similarity=0.142 Sum_probs=317.0
Q ss_pred CCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCE
Q 003270 72 EDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKS 151 (835)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 151 (835)
+...+.++++...++.. ....+..++++++|+++++.......+.+|..+++|++|++++|.+.+..|.+|+.+++|++
T Consensus 23 p~~l~~LdLs~N~i~~i-~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 101 (844)
T 3j0a_A 23 LNTTERLLLSFNYIRTV-TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFE 101 (844)
T ss_dssp CTTCCEEEEESCCCCEE-CSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCC
T ss_pred CCCcCEEECCCCcCCcc-ChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCE
Confidence 34455666665444321 12335678899999999954444444678999999999999999999999999999999999
Q ss_pred EEecCCCCCcccccc--cccCCcccEEeccCcccccc-----ccCCCCCcEEEecccchH----HHhhcC--CCCcEEee
Q 003270 152 LNVNDATLGNGVQEI--PINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMA----QAVLNC--PLLHLLDI 218 (835)
Q Consensus 152 L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~i~----~~~~~~--~~L~~L~l 218 (835)
|++++|.+++.++.. +..+++|++|++++|.+..+ ..++++|++|++++|.+. ..+..+ ++|+.|++
T Consensus 102 L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L 181 (844)
T 3j0a_A 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSL 181 (844)
T ss_dssp EECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEE
T ss_pred eeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEEC
Confidence 999999998866654 88899999999999987643 246777777777777654 334433 67777777
Q ss_pred cCCCCCCHHHHHHHHhcCCC------CCEEeCCCCCCCChHHHHHHHH--hCCCCcEEecCCCCCCCccccCCCCCcEEe
Q 003270 219 ASCHKLSDAAIRLAATSCPQ------LESLDMSNCSCVSDESLREIAL--SCANLRILNSSYCPNISLESVRLPMLTVLQ 290 (835)
Q Consensus 219 ~~~~~l~~~~l~~~~~~~~~------L~~L~L~~~~~l~~~~~~~~~~--~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 290 (835)
++|. +.. ..+..+..+++ |++|++++|. +++..+..+.. ..+.++.+.++.+.. ...
T Consensus 182 ~~n~-l~~-~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~l~~~~l~~L~l~~~~~-~~~----------- 246 (844)
T 3j0a_A 182 AANS-LYS-RVSVDWGKCMNPFRNMVLEILDVSGNG-WTVDITGNFSNAISKSQAFSLILAHHIM-GAG----------- 246 (844)
T ss_dssp CCSB-SCC-CCCCCCCSSSCTTTTCCBSEEBCSSCC-SSTTTTSGGGGTSCSCCBSEEECCSSCC-BCS-----------
T ss_pred CCCc-ccc-ccccchhhcCCccccCceeEEecCCCc-CchhHHHHHHhhcCcccccceecccccc-ccc-----------
Confidence 7763 331 11222233332 6667776665 44433333321 123455555542210 000
Q ss_pred cCCCCCCChhhHHHhhhc--cCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee---eeccCCCcc
Q 003270 291 LHSCEGITSASMAAISHS--YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI---MVSNCAALH 365 (835)
Q Consensus 291 l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~---~l~~~~~L~ 365 (835)
... ..+.+.....+..+ ++|++|++++|.+.+..+..+. .+++++.+++++|.++.+ .+..+++|+
T Consensus 247 ~~~-~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~--------~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 247 FGF-HNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFE--------TLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp SSC-SSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSS--------SCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred ccc-cccCCCChhhhhccccCCccEEECCCCcccccChhhhh--------cCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 000 01222222223322 5666666666665443333222 223333444444444444 466778888
Q ss_pred eeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcce
Q 003270 366 RINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLV 445 (835)
Q Consensus 366 ~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 445 (835)
+|++++|.+++..+..+. .+++|++|++++ +.+++..+..+ ..+++|+.|++++|. ++.++.
T Consensus 318 ~L~Ls~N~l~~~~~~~~~-------~l~~L~~L~L~~-N~i~~~~~~~~---~~l~~L~~L~Ls~N~-l~~i~~------ 379 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFY-------GLPKVAYIDLQK-NHIAIIQDQTF---KFLEKLQTLDLRDNA-LTTIHF------ 379 (844)
T ss_dssp EEEEESCCCSCCCSCSCS-------SCTTCCEEECCS-CCCCCCCSSCS---CSCCCCCEEEEETCC-SCCCSS------
T ss_pred EEECCCCCCCccCHHHhc-------CCCCCCEEECCC-CCCCccChhhh---cCCCCCCEEECCCCC-CCcccC------
Confidence 888888888765443333 346888888888 47776665555 678888888888875 443321
Q ss_pred EEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccc--cccc
Q 003270 446 SLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS--DAYI 523 (835)
Q Consensus 446 ~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~--~~~~ 523 (835)
+++|+.++++++.- .. +|. ....++.+++++|.++ .++ ..+.
T Consensus 380 ----------------~~~L~~L~l~~N~l-~~---l~~--------~~~~l~~L~ls~N~l~--------~l~~~~~~~ 423 (844)
T 3j0a_A 380 ----------------IPSIPDIFLSGNKL-VT---LPK--------INLTANLIHLSENRLE--------NLDILYFLL 423 (844)
T ss_dssp ----------------CCSCSEEEEESCCC-CC---CCC--------CCTTCCEEECCSCCCC--------SSTTHHHHT
T ss_pred ----------------CCCcchhccCCCCc-cc---ccc--------cccccceeecccCccc--------cCchhhhhh
Confidence 44555566555431 11 111 1345666677777663 222 2345
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCc----hhhHhhhhccccceeeecCccccCchH-HHhc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGP----DGLYSLRSLQNLTMLDLSYTFLTNLEP-VFES 598 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~ 598 (835)
.+++|++|++++| .++.......+..+++|+.|++++|..... ..+..+..+++|++|+|++|.++++++ .+..
T Consensus 424 ~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 502 (844)
T 3j0a_A 424 RVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSH 502 (844)
T ss_dssp TCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSS
T ss_pred cCCccceeeCCCC-cccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccc
Confidence 6788888888887 454322222345677888888888875421 113457778888888898888888655 5788
Q ss_pred cccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCc
Q 003270 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMH 667 (835)
Q Consensus 599 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 667 (835)
+++|++|++++|. +++..+..+ .++|+.|++++|++++ ..+.. +.+|+.|++++|+...
T Consensus 503 l~~L~~L~Ls~N~-l~~l~~~~~-----~~~L~~L~Ls~N~l~~-~~~~~---~~~L~~l~l~~Np~~C 561 (844)
T 3j0a_A 503 LTALRGLSLNSNR-LTVLSHNDL-----PANLEILDISRNQLLA-PNPDV---FVSLSVLDITHNKFIC 561 (844)
T ss_dssp CCSCSEEEEESCC-CSSCCCCCC-----CSCCCEEEEEEECCCC-CCSCC---CSSCCEEEEEEECCCC
T ss_pred hhhhheeECCCCC-CCccChhhh-----hccccEEECCCCcCCC-CChhH---hCCcCEEEecCCCccc
Confidence 8888999998887 776554432 2788888998888876 34432 4578888888877554
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=331.13 Aligned_cols=486 Identities=16% Similarity=0.127 Sum_probs=314.7
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|++++ +.+....+.+|..+++|++|++++|.+++..+.+|+++++|++|++++|.+++..+..+.++++|++|+
T Consensus 28 ~~l~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 28 FSTKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SSCCEEECCS-CCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred ccccEEEccC-CccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 3567777776 455555455666677777777777776666666666777777777777766655555666666666666
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+.. ..++.+++|++|++++| .+....+|..++++++|++|++++|. +++..+..
T Consensus 107 L~~n~l~~l~~----------------~~~~~l~~L~~L~L~~n-~l~~~~lp~~~~~l~~L~~L~l~~n~-l~~~~~~~ 168 (570)
T 2z63_A 107 AVETNLASLEN----------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTD 168 (570)
T ss_dssp CTTSCCCCSTT----------------CSCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECTTSC-CCEECGGG
T ss_pred ccccccccCCC----------------ccccccccccEEecCCC-ccceecChhhhcccCCCCEEeCcCCc-cceecHHH
Confidence 66665543320 13566777777777776 34432345667788888888888887 65443333
Q ss_pred HHHhCCCC----cEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc-----ccc
Q 003270 258 IALSCANL----RILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT-----SVS 326 (835)
Q Consensus 258 ~~~~~~~L----~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----~~~ 326 (835)
+. .+++| +.|++++|. .++.......+|++|++.++..-....+..+..+.+++.+.+....+.. .++
T Consensus 169 ~~-~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~ 247 (570)
T 2z63_A 169 LR-VLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD 247 (570)
T ss_dssp GH-HHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECC
T ss_pred cc-chhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcc
Confidence 33 44555 788888876 3333334444788888887644444556667777777766554322111 111
Q ss_pred c-cCcccceeeccccccccchhhccc-cccee---eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecC
Q 003270 327 L-ELPRLQNIRLVHCRKFADLNLRAM-MLSSI---MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLT 401 (835)
Q Consensus 327 ~-~~~~L~~L~~~~~~~l~~l~l~~~-~l~~~---~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~ 401 (835)
. .+..+..+. ++.+.+..+ .+... .+..+++|+.+++++|.+++.... ...+ +|++|+++
T Consensus 248 ~~~~~~l~~l~------l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~l~~~--------~~~~-~L~~L~l~ 312 (570)
T 2z63_A 248 KSALEGLCNLT------IEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF--------SYNF-GWQHLELV 312 (570)
T ss_dssp TTTTGGGGGSE------EEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECSCCBC--------CSCC-CCSEEEEE
T ss_pred hhhhccccccc------hhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchhhhhh--------hccC-CccEEeec
Confidence 1 111111111 111112111 11110 345667777777777766543111 1133 67777777
Q ss_pred CCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccc
Q 003270 402 DCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASF 481 (835)
Q Consensus 402 ~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~ 481 (835)
+| .++.. |. ..+++|++|++.++......+ ...+++|++++++++. +...+.
T Consensus 313 ~n-~~~~l-~~-----~~l~~L~~L~l~~n~~~~~~~--------------------~~~~~~L~~L~l~~n~-l~~~~~ 364 (570)
T 2z63_A 313 NC-KFGQF-PT-----LKLKSLKRLTFTSNKGGNAFS--------------------EVDLPSLEFLDLSRNG-LSFKGC 364 (570)
T ss_dssp SC-BCSSC-CB-----CBCSSCCEEEEESCBSCCBCC--------------------CCBCTTCCEEECCSSC-CBEEEE
T ss_pred cC-ccccc-Cc-----ccccccCEEeCcCCccccccc--------------------cccCCCCCEEeCcCCc-cCcccc
Confidence 73 55421 11 356677777777765211110 0357888888888764 222222
Q ss_pred ccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccC
Q 003270 482 VPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMS 561 (835)
Q Consensus 482 ~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~ 561 (835)
.|.. +..+++|+.+++++|.+. .++..+..+++|++|++++| .+........+..+++|++|++++
T Consensus 365 ~~~~-----~~~~~~L~~L~l~~n~l~--------~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~ 430 (570)
T 2z63_A 365 CSQS-----DFGTTSLKYLDLSFNGVI--------TMSSNFLGLEQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISH 430 (570)
T ss_dssp EEHH-----HHTCSCCCEEECCSCSEE--------EEEEEEETCTTCCEEECTTS-EEESCTTSCTTTTCTTCCEEECTT
T ss_pred cccc-----ccccCccCEEECCCCccc--------cccccccccCCCCEEEccCC-ccccccchhhhhcCCCCCEEeCcC
Confidence 2332 678899999999999884 34445888999999999998 454332234678999999999999
Q ss_pred CCCcCchhhHhhhhccccceeeecCcccc--CchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcc
Q 003270 562 CQSIGPDGLYSLRSLQNLTMLDLSYTFLT--NLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 639 (835)
Q Consensus 562 ~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~--~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~ 639 (835)
|..... .+..+..+++|++|++++|.+. .+|..+..+++|++|++++|+ +++..+..+ ..+++|++|++++|+
T Consensus 431 n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n~ 505 (570)
T 2z63_A 431 THTRVA-FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAF---NSLSSLQVLNMASNQ 505 (570)
T ss_dssp SCCEEC-CTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCSSC
T ss_pred Cccccc-chhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc-cccCChhhh---hcccCCCEEeCCCCc
Confidence 986544 3677899999999999999997 378889999999999999998 887766654 788999999999999
Q ss_pred cchHHHHHHHhhCCCccEEEccCCCCC
Q 003270 640 LCQSAIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 640 ~~~~~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
+++ ..+..+..+++|++|++++|+-.
T Consensus 506 l~~-~~~~~~~~l~~L~~L~l~~N~~~ 531 (570)
T 2z63_A 506 LKS-VPDGIFDRLTSLQKIWLHTNPWD 531 (570)
T ss_dssp CSC-CCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCC-CCHHHhhcccCCcEEEecCCccc
Confidence 987 45667889999999999999743
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-35 Score=340.35 Aligned_cols=223 Identities=14% Similarity=0.128 Sum_probs=127.3
Q ss_pred eeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEc-CCcccChhhHHh------------
Q 003270 76 RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTL-GRGQLGDAFFHA------------ 142 (835)
Q Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l-~~~~i~~~~~~~------------ 142 (835)
.+|.|+.. .+++.|++++ +.+.+.+|++++.+++|++|++ ++|.+.+..+..
T Consensus 315 ~GV~C~~~--------------~~V~~L~Ls~-~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~ 379 (876)
T 4ecn_A 315 PGVDLDNN--------------GRVTGLSLAG-FGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEER 379 (876)
T ss_dssp TTEEECTT--------------SCEEEEECTT-TCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHH
T ss_pred CceEecCC--------------CCEEEEECcc-CCCCCcCchHHhccccceEeeecccccccccccccccccccccchhH
Confidence 88888652 3899999999 5788888999999999999999 888766542111
Q ss_pred ----------------------------hc-----------CCCCCCEEEecC--CCCCcccccccccCCcccEEeccCc
Q 003270 143 ----------------------------LA-----------DCSMLKSLNVND--ATLGNGVQEIPINHDQLRRLEITKC 181 (835)
Q Consensus 143 ----------------------------l~-----------~~~~L~~L~l~~--~~~~~~~~~~~~~l~~L~~L~l~~~ 181 (835)
+. ....++.+.+.. |.+++ +|..+.++++|++|++++|
T Consensus 380 l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N 458 (876)
T 4ecn_A 380 KHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANS 458 (876)
T ss_dssp HHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESC
T ss_pred HHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCC
Confidence 00 111233333332 66666 8888999999999999999
Q ss_pred cccc------------------ccc-----CCCCCcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 003270 182 RVMR------------------VSI-----RCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAAT 234 (835)
Q Consensus 182 ~~~~------------------~~~-----~l~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~ 234 (835)
.+.. ++. ++++|++|++++|.+. ..++++++|++|++++|..++...+|..++
T Consensus 459 ~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~ 538 (876)
T 4ecn_A 459 PFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538 (876)
T ss_dssp CCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH
T ss_pred cCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHH
Confidence 8876 221 3455555555555432 345555555555555552244213444444
Q ss_pred cCC-------CCCEEeCCCCCCCChHHHH--HHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHH
Q 003270 235 SCP-------QLESLDMSNCSCVSDESLR--EIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMA 303 (835)
Q Consensus 235 ~~~-------~L~~L~L~~~~~l~~~~~~--~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~ 303 (835)
+++ +|++|++++|. ++ ..+. .+. ++++|+.|++++|. .+| .+..+++|++|++++| .+. ..+.
T Consensus 539 ~L~~~~~~l~~L~~L~Ls~N~-L~-~ip~~~~l~-~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N-~l~-~lp~ 612 (876)
T 4ecn_A 539 RLADDEDTGPKIQIFYMGYNN-LE-EFPASASLQ-KMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYN-QIE-EIPE 612 (876)
T ss_dssp HHHHCTTTTTTCCEEECCSSC-CC-BCCCHHHHT-TCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSS-CCS-CCCT
T ss_pred hhhhcccccCCccEEEeeCCc-CC-ccCChhhhh-cCCCCCEEECCCCCcccch-hhcCCCcceEEECcCC-ccc-cchH
Confidence 333 55555555555 44 2222 232 45555555555554 333 3444445555555443 333 2333
Q ss_pred HhhhccC-ccEEEccCCC
Q 003270 304 AISHSYM-LEVLELDNCN 320 (835)
Q Consensus 304 ~l~~~~~-L~~L~l~~~~ 320 (835)
.+..+++ |++|++++|.
T Consensus 613 ~l~~l~~~L~~L~Ls~N~ 630 (876)
T 4ecn_A 613 DFCAFTDQVEGLGFSHNK 630 (876)
T ss_dssp TSCEECTTCCEEECCSSC
T ss_pred HHhhccccCCEEECcCCC
Confidence 3444444 4444444444
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-34 Score=327.93 Aligned_cols=457 Identities=16% Similarity=0.116 Sum_probs=285.4
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|++++ +.+.+..+.+|..+++|++|++++|.+++..+.+|+.+++|++|++++|.+++..+..+.++++|++|+
T Consensus 26 ~~L~~L~Ls~-n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 104 (549)
T 2z81_A 26 AAMKSLDLSF-NKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLN 104 (549)
T ss_dssp TTCCEEECCS-SCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEE
T ss_pred CCccEEECcC-CccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEE
Confidence 6899999999 567776677899999999999999999998889999999999999999999988888899999999999
Q ss_pred ccCcccccc-----ccCCCCCcEEEecccc-hH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCC
Q 003270 178 ITKCRVMRV-----SIRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 247 (835)
Q Consensus 178 l~~~~~~~~-----~~~l~~L~~L~l~~~~-i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~ 247 (835)
+++|.+..+ ..++++|++|++++|. +. ..+..+++|++|++++| .++. ..+..++++++|++|++++|
T Consensus 105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~l~~l~~L~~L~l~~n 182 (549)
T 2z81_A 105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL-SLRN-YQSQSLKSIRDIHHLTLHLS 182 (549)
T ss_dssp CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEET-TCCE-ECTTTTTTCSEEEEEEEECS
T ss_pred CCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCC-cccc-cChhhhhccccCceEecccC
Confidence 999988643 3578999999999987 33 46788999999999998 4552 34667888999999999999
Q ss_pred CCCChHHHHHHHHhCCCCcEEecCCCC--CC---Cc-cccCCCCCcEEecCCCCCCChhhHHHh----hhccCccEEEcc
Q 003270 248 SCVSDESLREIALSCANLRILNSSYCP--NI---SL-ESVRLPMLTVLQLHSCEGITSASMAAI----SHSYMLEVLELD 317 (835)
Q Consensus 248 ~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l---~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l----~~~~~L~~L~l~ 317 (835)
. ++ ..+..+...+++|+.|++++|. .+ +. ....+++|++|++.++ .+.+..+..+ ..+++|+.++++
T Consensus 183 ~-~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 183 E-SA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGS-VLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp B-ST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESC-EEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred c-cc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceecccc-ccchhHHHHHHHHhhhhccccccccc
Confidence 8 55 3445555579999999999986 22 11 2345789999999997 7777666554 456899999999
Q ss_pred CCCcccccc---------ccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHH
Q 003270 318 NCNLLTSVS---------LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSL 388 (835)
Q Consensus 318 ~~~~~~~~~---------~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l 388 (835)
+|.+.+... ..+++++.+.+.++.--..... ..+.. .....++|+.+++++|.++.... .+
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~--~~l~~-~~~~~~~L~~L~l~~n~l~~ip~-------~~ 329 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLF--YDLST-VYSLLEKVKRITVENSKVFLVPC-------SF 329 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGS--CCCCH-HHHHSTTCCEEEEESSCCCCCCH-------HH
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhc--ccchh-hhhhcccceEEEeccCccccCCH-------HH
Confidence 987654211 1233333333332210000000 00000 01223455555555555542210 01
Q ss_pred HhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEE
Q 003270 389 ALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKV 468 (835)
Q Consensus 389 ~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l 468 (835)
...+++|++|++++ +.+++..+......+.+++|++|++++|. ++.++
T Consensus 330 ~~~l~~L~~L~Ls~-N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~------------------------------ 377 (549)
T 2z81_A 330 SQHLKSLEFLDLSE-NLMVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQ------------------------------ 377 (549)
T ss_dssp HHHCTTCCEEECCS-SCCCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHH------------------------------
T ss_pred HhcCccccEEEccC-CccccccccchhhhhccccCcEEEccCCc-ccccc------------------------------
Confidence 11345556666655 35555443322222445555555555553 22110
Q ss_pred ecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhh
Q 003270 469 CLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATT 548 (835)
Q Consensus 469 ~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~ 548 (835)
..+. .+..+++|+.+++++|++ ..+|..+..+++|++|++++| .++. ++..+
T Consensus 378 ------------~~~~-----~~~~l~~L~~L~Ls~N~l--------~~lp~~~~~~~~L~~L~Ls~N-~l~~--l~~~~ 429 (549)
T 2z81_A 378 ------------KTGE-----ILLTLKNLTSLDISRNTF--------HPMPDSCQWPEKMRFLNLSST-GIRV--VKTCI 429 (549)
T ss_dssp ------------HHHH-----HGGGCTTCCEEECTTCCC--------CCCCSCCCCCTTCCEEECTTS-CCSC--CCTTS
T ss_pred ------------cchh-----hhhcCCCCCEEECCCCCC--------ccCChhhcccccccEEECCCC-Cccc--ccchh
Confidence 0000 034455555555555555 345555555666666666666 3332 22111
Q ss_pred hcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCC
Q 003270 549 TSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLP 628 (835)
Q Consensus 549 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~ 628 (835)
.++|++|++++|...+. ...+++|++|++++|+++.+|. ...+++|++|++++|+ +++..+..+ ..++
T Consensus 430 --~~~L~~L~Ls~N~l~~~-----~~~l~~L~~L~Ls~N~l~~ip~-~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~ 497 (549)
T 2z81_A 430 --PQTLEVLDVSNNNLDSF-----SLFLPRLQELYISRNKLKTLPD-ASLFPVLLVMKISRNQ-LKSVPDGIF---DRLT 497 (549)
T ss_dssp --CTTCSEEECCSSCCSCC-----CCCCTTCCEEECCSSCCSSCCC-GGGCTTCCEEECCSSC-CCCCCTTGG---GGCT
T ss_pred --cCCceEEECCCCChhhh-----cccCChhcEEECCCCccCcCCC-cccCccCCEEecCCCc-cCCcCHHHH---hcCc
Confidence 13556666665554332 1345556666666666555554 2345556666666555 554443332 4455
Q ss_pred CccEEeCCCcccch
Q 003270 629 ALQELDLSYGTLCQ 642 (835)
Q Consensus 629 ~L~~L~l~~n~~~~ 642 (835)
+|+.|++++|++..
T Consensus 498 ~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 498 SLQKIWLHTNPWDC 511 (549)
T ss_dssp TCCEEECCSSCBCC
T ss_pred ccCEEEecCCCccC
Confidence 55556665555543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-34 Score=331.28 Aligned_cols=234 Identities=14% Similarity=0.174 Sum_probs=136.4
Q ss_pred HHHHhhcCCCCc---eeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCccc-----
Q 003270 64 QWRAASAHEDFW---RCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQL----- 135 (835)
Q Consensus 64 ~W~~~~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i----- 135 (835)
.|. ...++|.| .+|.|+.. .+|+.|++++ +.+.+.++++++.+++|++|++++|.+
T Consensus 59 ~W~-~~~~~c~w~~~~GV~C~~~--------------~~V~~L~L~~-~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~ 122 (636)
T 4eco_A 59 NWN-FNKELDMWGAQPGVSLNSN--------------GRVTGLSLEG-FGASGRVPDAIGQLTELEVLALGSHGEKVNER 122 (636)
T ss_dssp CCC-CSSCGGGTTCCTTEEECTT--------------CCEEEEECTT-SCCEEEECGGGGGCTTCCEEESCCGGGGGTCC
T ss_pred CCC-CCCCcccccCCCCeEEcCC--------------CCEEEEEecC-cccCCcCChHHhcCccceEEECcCCccccCCc
Confidence 476 45678999 99999644 3799999999 578888889999999999999999965
Q ss_pred -Ch---------------------------hhHHhhc-------------------CCCCCCEEEec--CCCCCcccccc
Q 003270 136 -GD---------------------------AFFHALA-------------------DCSMLKSLNVN--DATLGNGVQEI 166 (835)
Q Consensus 136 -~~---------------------------~~~~~l~-------------------~~~~L~~L~l~--~~~~~~~~~~~ 166 (835)
.+ ..+..+. ....++.+.+. .|.+++ +|+.
T Consensus 123 ~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~ 201 (636)
T 4eco_A 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKA 201 (636)
T ss_dssp SBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGG
T ss_pred cccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHH
Confidence 11 1111111 01112222222 456767 8888
Q ss_pred cccCCcccEEeccCccccccccCCCCCcEEEeccc----chHHHhh--cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCC
Q 003270 167 PINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS----NMAQAVL--NCPLLHLLDIASCHKLSDAAIRLAATSCPQLE 240 (835)
Q Consensus 167 ~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~----~i~~~~~--~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~ 240 (835)
++++++|++|++++|.+........ ....... .++..++ ++++|++|++++|. +. +.+|..++++++|+
T Consensus 202 l~~l~~L~~L~Ls~n~l~~~~~~~~---~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~-l~-~~~p~~l~~l~~L~ 276 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSPFVAENICEA---WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP-NL-TKLPTFLKALPEMQ 276 (636)
T ss_dssp GGGCTTCCEEEEESCCCCGGGBSSS---CSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCT-TC-SSCCTTTTTCSSCC
T ss_pred HhcccCCCEEECcCCcccccccccc---ccccccchhcccCchhhhhcccCCCCEEEecCCc-CC-ccChHHHhcCCCCC
Confidence 9999999999999998876100000 0000000 0222333 45555555555552 22 13344455555555
Q ss_pred EEeCCCCCCCCh-HHHHHHHHhC------CCCcEEecCCCC--CCCc--cccCCCCCcEEecCCCCCCChhhHHHhhhcc
Q 003270 241 SLDMSNCSCVSD-ESLREIALSC------ANLRILNSSYCP--NISL--ESVRLPMLTVLQLHSCEGITSASMAAISHSY 309 (835)
Q Consensus 241 ~L~L~~~~~l~~-~~~~~~~~~~------~~L~~L~l~~~~--~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 309 (835)
+|++++|..+++ ..|..+. .+ ++|++|++++|. .+|. .++.+++|++|++++| .+.+..+ .++.++
T Consensus 277 ~L~Ls~n~~l~~~~lp~~~~-~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N-~l~g~ip-~~~~l~ 353 (636)
T 4eco_A 277 LINVACNRGISGEQLKDDWQ-ALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYN-QLEGKLP-AFGSEI 353 (636)
T ss_dssp EEECTTCTTSCHHHHHHHHH-HHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSC-CCEEECC-CCEEEE
T ss_pred EEECcCCCCCccccchHHHH-hhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCC-cCccchh-hhCCCC
Confidence 555555543444 4444443 32 556666665555 4555 5556666666666665 5554444 566666
Q ss_pred CccEEEccCCCcc
Q 003270 310 MLEVLELDNCNLL 322 (835)
Q Consensus 310 ~L~~L~l~~~~~~ 322 (835)
+|++|++++|.+.
T Consensus 354 ~L~~L~L~~N~l~ 366 (636)
T 4eco_A 354 KLASLNLAYNQIT 366 (636)
T ss_dssp EESEEECCSSEEE
T ss_pred CCCEEECCCCccc
Confidence 7777777766543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=331.04 Aligned_cols=478 Identities=15% Similarity=0.105 Sum_probs=305.4
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
..+.+++++..++... ...+..++++++|+++++ .+....+.+|..+++|++|++++|.+++..+.+|+++++|++|+
T Consensus 29 ~l~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (570)
T 2z63_A 29 STKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 106 (570)
T ss_dssp SCCEEECCSCCCCEEC-TTTTTTCSSCCEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred cccEEEccCCccCccC-hhHhhCCCCceEEECCCC-cCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCcccccccc
Confidence 4456777665443211 124567899999999994 67776677899999999999999999988889999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCcccccc-----ccCCCCCcEEEecccchH----HHhhcCCCC----cEEeecC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMA----QAVLNCPLL----HLLDIAS 220 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~i~----~~~~~~~~L----~~L~l~~ 220 (835)
+++|.+++..+..++++++|++|++++|.+..+ ..++++|++|++++|.+. ..++.+++| ++|++++
T Consensus 107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~ 186 (570)
T 2z63_A 107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186 (570)
T ss_dssp CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred ccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCC
Confidence 999998765554688999999999999987642 346899999999998775 456666677 7899998
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--------CCCc-cccCCC--CCcEE
Q 003270 221 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--------NISL-ESVRLP--MLTVL 289 (835)
Q Consensus 221 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--------~l~~-~~~~~~--~L~~L 289 (835)
|. +... .+..+.. .+|++|++++|. ............++.++.+.+.... .++. .+..++ .++.+
T Consensus 187 n~-l~~~-~~~~~~~-~~L~~L~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l 262 (570)
T 2z63_A 187 NP-MNFI-QPGAFKE-IRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 262 (570)
T ss_dssp CC-CCEE-CTTTTTT-CEEEEEEEESCC-SCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEE
T ss_pred CC-ceec-CHHHhcc-CcceeEeccccc-ccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhh
Confidence 83 4421 1233333 479999999886 3333344444477777766553221 0110 111111 23445
Q ss_pred ecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeee
Q 003270 290 QLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINI 369 (835)
Q Consensus 290 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l 369 (835)
++.++..+.+..+..+..+++|++|++++|.+. .+|.. +..+ +|++|++
T Consensus 263 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~-----------------------------~~~~-~L~~L~l 311 (570)
T 2z63_A 263 RLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDF-----------------------------SYNF-GWQHLEL 311 (570)
T ss_dssp EEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBC-----------------------------CSCC-CCSEEEE
T ss_pred hhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhh-----------------------------hccC-CccEEee
Confidence 554443344444555666677777777666543 23322 2233 4445555
Q ss_pred ccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEec
Q 003270 370 TSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSL 449 (835)
Q Consensus 370 ~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l 449 (835)
++|.+...... .+++|++|++++| .+.+..+. ..+++|++|++++|. ++....
T Consensus 312 ~~n~~~~l~~~----------~l~~L~~L~l~~n-~~~~~~~~-----~~~~~L~~L~l~~n~-l~~~~~---------- 364 (570)
T 2z63_A 312 VNCKFGQFPTL----------KLKSLKRLTFTSN-KGGNAFSE-----VDLPSLEFLDLSRNG-LSFKGC---------- 364 (570)
T ss_dssp ESCBCSSCCBC----------BCSSCCEEEEESC-BSCCBCCC-----CBCTTCCEEECCSSC-CBEEEE----------
T ss_pred ccCcccccCcc----------cccccCEEeCcCC-cccccccc-----ccCCCCCEEeCcCCc-cCcccc----------
Confidence 55544422110 2345555555552 33322111 345555555555543 221100
Q ss_pred cCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccc-cccccCCCc
Q 003270 450 VGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLL 528 (835)
Q Consensus 450 ~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~-~~~~~~~~L 528 (835)
.......+++|+.+++++|.-. .+|+. +..+++|+.+++++|.+. +..+ ..+..+++|
T Consensus 365 -----~~~~~~~~~~L~~L~l~~n~l~----~~~~~-----~~~l~~L~~L~l~~n~l~-------~~~~~~~~~~l~~L 423 (570)
T 2z63_A 365 -----CSQSDFGTTSLKYLDLSFNGVI----TMSSN-----FLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRNL 423 (570)
T ss_dssp -----EEHHHHTCSCCCEEECCSCSEE----EEEEE-----EETCTTCCEEECTTSEEE-------SCTTSCTTTTCTTC
T ss_pred -----ccccccccCccCEEECCCCccc----ccccc-----ccccCCCCEEEccCCccc-------cccchhhhhcCCCC
Confidence 0000112444555555544211 11221 566777888888877774 3333 357788888
Q ss_pred ceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCc-hHHHhccccccEEec
Q 003270 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKL 607 (835)
Q Consensus 529 ~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l 607 (835)
++|++++|. +. +..+..+..+++|++|++++|.......+..+..+++|++|++++|.++++ |..+..+++|++|++
T Consensus 424 ~~L~l~~n~-l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 424 IYLDISHTH-TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp CEEECTTSC-CE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CEEeCcCCc-cc-ccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 888888883 43 335566778888888888888765333356788888999999999988876 668888899999999
Q ss_pred ccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 608 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 608 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
++|+ +++..+..+ ..+++|+.|++++|.++.
T Consensus 502 ~~n~-l~~~~~~~~---~~l~~L~~L~l~~N~~~~ 532 (570)
T 2z63_A 502 ASNQ-LKSVPDGIF---DRLTSLQKIWLHTNPWDC 532 (570)
T ss_dssp CSSC-CSCCCTTTT---TTCTTCCEEECCSSCBCC
T ss_pred CCCc-CCCCCHHHh---hcccCCcEEEecCCcccC
Confidence 9987 877655443 678889999999988765
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-33 Score=322.29 Aligned_cols=531 Identities=16% Similarity=0.090 Sum_probs=289.9
Q ss_pred CeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEec
Q 003270 99 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 178 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 178 (835)
++++|++++ +.+....+.+|..+++|++|++++|.+++..+.+|+++++|++|++++|++++..+..+.++++|++|++
T Consensus 53 ~~~~LdLs~-N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L 131 (635)
T 4g8a_A 53 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 131 (635)
T ss_dssp TCCEEECTT-SCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred CCCEEEeeC-CCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence 577777777 5666665667777777777777777777766667777777777777777776555556666677777776
Q ss_pred cCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHH--
Q 003270 179 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR-- 256 (835)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~-- 256 (835)
++|.+..+.. ..++.+++|++|++++| .++...++..++++++|++|++++|. ++...+.
T Consensus 132 s~N~l~~l~~----------------~~~~~L~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~l 193 (635)
T 4g8a_A 132 VETNLASLEN----------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 193 (635)
T ss_dssp TTSCCCCSTT----------------CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGG
T ss_pred CCCcCCCCCh----------------hhhhcCcccCeeccccC-ccccCCCchhhccchhhhhhcccCcc-ccccccccc
Confidence 6666544321 23566677777777776 34433345566778888888888887 6543322
Q ss_pred -HHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccc
Q 003270 257 -EIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQ 333 (835)
Q Consensus 257 -~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~ 333 (835)
.+.........++++.+. .++........++.+++.++..........+..+..++...+......... .++
T Consensus 194 ~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~-----~l~ 268 (635)
T 4g8a_A 194 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEG-----NLE 268 (635)
T ss_dssp HHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSC-----CCS
T ss_pred cchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCccccccccccccccccc-----ccc
Confidence 222112234567777775 344555555667778877753333344455666777776655432211110 000
Q ss_pred eeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhh
Q 003270 334 NIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEV 413 (835)
Q Consensus 334 ~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~ 413 (835)
...... +.....+....+..+...... ............++.+++.+ +.+.... .
T Consensus 269 ~~~~~~------------------~~~~~~l~~~~l~~~~~~~~~----~~~~~~~~~~~~l~~l~~~~-~~~~~~~--~ 323 (635)
T 4g8a_A 269 KFDKSA------------------LEGLCNLTIEEFRLAYLDYYL----DGIIDLFNCLTNVSSFSLVS-VTIERVK--D 323 (635)
T ss_dssp CCCTTT------------------TGGGGGSEEEEEEEECCCSCE----EECTTTTGGGTTCSEEEEES-CEEEECG--G
T ss_pred cccccc------------------cccccchhhhhhhhhhhcccc----cchhhhhhhhcccccccccc-ccccccc--c
Confidence 000000 011111111111111000000 00000000224555555555 2333221 1
Q ss_pred ccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCc
Q 003270 414 FSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGI 493 (835)
Q Consensus 414 ~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~ 493 (835)
+ .....++.|++.++. +..++. ..+..++.+.+.++.... +. ....
T Consensus 324 ~---~~~~~L~~L~l~~~~-~~~~~~--------------------~~l~~L~~l~l~~n~~~~-----~~-----~~~~ 369 (635)
T 4g8a_A 324 F---SYNFGWQHLELVNCK-FGQFPT--------------------LKLKSLKRLTFTSNKGGN-----AF-----SEVD 369 (635)
T ss_dssp G---GSCCCCSEEEEESCE-ESSCCC--------------------CBCTTCCEEEEESCCSCC-----BC-----CCCB
T ss_pred c---ccchhhhhhhccccc-ccCcCc--------------------ccchhhhhcccccccCCC-----Cc-----cccc
Confidence 1 334456666666553 211100 012233333333321100 00 1334
Q ss_pred CCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 494 CPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 494 ~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
+++|+.++++.|.+... +..+..+..+.+|+.+++..+. .. ..+..+..+++|+.+++.++..........+
T Consensus 370 l~~L~~L~ls~n~l~~~-----~~~~~~~~~~~~L~~L~~~~~~-~~--~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~ 441 (635)
T 4g8a_A 370 LPSLEFLDLSRNGLSFK-----GCCSQSDFGTISLKYLDLSFNG-VI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 441 (635)
T ss_dssp CTTCCEEECCSSCCBEE-----EECCHHHHSCSCCCEEECCSCS-EE--EECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred ccccccchhhccccccc-----cccccchhhhhhhhhhhccccc-cc--cccccccccccccchhhhhcccccccccccc
Confidence 56666666666655322 2234445556677777777663 21 2344455667777777776665544434456
Q ss_pred hhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhC
Q 003270 574 RSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC 652 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~ 652 (835)
..+++++.+++++|.+..+ +..+..++.|+.|++++|.......+.. +..+++|++|++++|++++ ..+..|..+
T Consensus 442 ~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~---~~~l~~L~~L~Ls~N~L~~-l~~~~f~~l 517 (635)
T 4g8a_A 442 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI---FTELRNLTFLDLSQCQLEQ-LSPTAFNSL 517 (635)
T ss_dssp TTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC---CTTCTTCCEEECTTSCCCE-ECTTTTTTC
T ss_pred ccccccccccccccccccccccccccchhhhhhhhhhcccccccCchh---hhhccccCEEECCCCccCC-cChHHHcCC
Confidence 6677777777777776653 3356666777777777766333333322 3556667777777776665 345556666
Q ss_pred CCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCcc
Q 003270 653 THLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHL 732 (835)
Q Consensus 653 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L 732 (835)
++|++|++++|. +..+ +
T Consensus 518 ~~L~~L~Ls~N~-l~~l------------------------------------------------------~-------- 534 (635)
T 4g8a_A 518 SSLQVLNMSHNN-FFSL------------------------------------------------------D-------- 534 (635)
T ss_dssp TTCCEEECTTSC-CCBC------------------------------------------------------C--------
T ss_pred CCCCEEECCCCc-CCCC------------------------------------------------------C--------
Confidence 666666666663 1110 0
Q ss_pred ceEeccCCCCccccccccccccEEecccccchhhhhhcCCccceeecccCcCChhHHHHHHhcC-CCcceeecccccCCC
Q 003270 733 SSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQC-GMLETLDVRFCPKIC 811 (835)
Q Consensus 733 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~-~~L~~l~l~~c~~l~ 811 (835)
......+++|++|++++|+|+ ...|..+..+ ++|+.|++++||..|
T Consensus 535 --------------------------------~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 535 --------------------------------TFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp --------------------------------CGGGTTCTTCCEEECTTSCCC-BCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred --------------------------------hhHHhCCCCCCEEECCCCcCC-CCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 000123567888888888875 3345667777 589999999999999
Q ss_pred chHHHHHHH
Q 003270 812 STSMGRLRA 820 (835)
Q Consensus 812 ~~~~~~~~~ 820 (835)
+|.+..+.+
T Consensus 582 ~C~~~~~~~ 590 (635)
T 4g8a_A 582 TCEHQSFLQ 590 (635)
T ss_dssp SGGGHHHHH
T ss_pred cCCcHHHHH
Confidence 998777654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.8e-32 Score=312.46 Aligned_cols=449 Identities=14% Similarity=0.139 Sum_probs=269.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCC------c------ccccccccCCcccEEeccCcccccc-c--
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG------N------GVQEIPINHDQLRRLEITKCRVMRV-S-- 187 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~------~------~~~~~~~~l~~L~~L~l~~~~~~~~-~-- 187 (835)
.+++.|+++++.+.+.+|.+++++++|++|++++|.+. + .+|... +..|| ++++++.+... .
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 47899999999999999999999999999999999651 1 111111 12222 22222211100 0
Q ss_pred --------------------cCCCCCcEE-------EecccchHHHhhcCCCCcEEeecCCCCCC---------------
Q 003270 188 --------------------IRCPQLEHL-------SLKRSNMAQAVLNCPLLHLLDIASCHKLS--------------- 225 (835)
Q Consensus 188 --------------------~~l~~L~~L-------~l~~~~i~~~~~~~~~L~~L~l~~~~~l~--------------- 225 (835)
.....++.+ .+.+ ++..++++++|++|++++|.--.
T Consensus 158 ~~~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~--ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~ 235 (636)
T 4eco_A 158 FSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF--VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYA 235 (636)
T ss_dssp SCHHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE--ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHH
T ss_pred HHHHHHHHhhcCccccccccccccchhhhhhccccCCCcc--CCHHHhcccCCCEEECcCCccccccccccccccccchh
Confidence 000000000 2333 34456666666666666654332
Q ss_pred HHHHHHHHh--cCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC-----CCCccccCC------CCCcEEecC
Q 003270 226 DAAIRLAAT--SCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-----NISLESVRL------PMLTVLQLH 292 (835)
Q Consensus 226 ~~~l~~~~~--~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-----~l~~~~~~~------~~L~~L~l~ 292 (835)
.+.+|..++ ++++|++|++++|. +.+..|..+. ++++|+.|++++|. .+|..++.+ ++|++|+++
T Consensus 236 ~~~ip~~l~~~~l~~L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~ 313 (636)
T 4eco_A 236 QQYKTEDLKWDNLKDLTDVEVYNCP-NLTKLPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIG 313 (636)
T ss_dssp HHHTTSCCCGGGCTTCCEEEEECCT-TCSSCCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECC
T ss_pred cccCchhhhhcccCCCCEEEecCCc-CCccChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECC
Confidence 122566777 99999999999998 6767777676 89999999999997 466666665 999999999
Q ss_pred CCCCCChhhHH--HhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee--eeccCCC-ccee
Q 003270 293 SCEGITSASMA--AISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI--MVSNCAA-LHRI 367 (835)
Q Consensus 293 ~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~--~l~~~~~-L~~L 367 (835)
+| .+. ..+. .++.+++|++|++++|.+.+.+| .+..+ ++|+.+++++|.++.+ .+..+++ |++|
T Consensus 314 ~n-~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l--------~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L 382 (636)
T 4eco_A 314 YN-NLK-TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSE--------IKLASLNLAYNQITEIPANFCGFTEQVENL 382 (636)
T ss_dssp SS-CCS-SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEE--------EEESEEECCSSEEEECCTTSEEECTTCCEE
T ss_pred CC-cCC-ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCC--------CCCCEEECCCCccccccHhhhhhcccCcEE
Confidence 97 677 5655 89999999999999999887777 44322 2333444445544433 3555666 6666
Q ss_pred eeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCC----CCCCCccEEEecCCCCCccccccCCc
Q 003270 368 NITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDG----GGCPMLKSLVLDNCEGLTVVRFCSTS 443 (835)
Q Consensus 368 ~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~----~~~~~L~~L~l~~~~~l~~~~~~~~~ 443 (835)
++++|.++.. +...... .+++|++|++++ +.+++..|..+... ..+++|++|++++|. ++.+
T Consensus 383 ~Ls~N~l~~l-p~~~~~~-----~l~~L~~L~Ls~-N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~-l~~l------ 448 (636)
T 4eco_A 383 SFAHNKLKYI-PNIFDAK-----SVSVMSAIDFSY-NEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ-ISKF------ 448 (636)
T ss_dssp ECCSSCCSSC-CSCCCTT-----CSSCEEEEECCS-SCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC-CCSC------
T ss_pred EccCCcCccc-chhhhhc-----ccCccCEEECcC-CcCCCcchhhhcccccccccCCCCCEEECcCCc-cCcC------
Confidence 6666666532 1111111 123566666666 46665555444210 034455666655553 2211
Q ss_pred ceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccc--
Q 003270 444 LVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDA-- 521 (835)
Q Consensus 444 l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~-- 521 (835)
|..+ +..+++|+.|++++|.++ .+|..
T Consensus 449 ---------------------------------------p~~~----~~~l~~L~~L~Ls~N~l~--------~i~~~~~ 477 (636)
T 4eco_A 449 ---------------------------------------PKEL----FSTGSPLSSINLMGNMLT--------EIPKNSL 477 (636)
T ss_dssp ---------------------------------------CTHH----HHTTCCCSEEECCSSCCS--------BCCSSSS
T ss_pred ---------------------------------------CHHH----HccCCCCCEEECCCCCCC--------CcCHHHh
Confidence 1111 233455555555555552 22221
Q ss_pred ------cccCCCcceEecccCCCCccchhhhhhh--cCCCccEEeccCCCCcCchhhHhhhhccccceeeec------Cc
Q 003270 522 ------YINCPLLTSLDASFCSQLKDDCLSATTT--SCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLS------YT 587 (835)
Q Consensus 522 ------~~~~~~L~~L~ls~~~~l~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls------~~ 587 (835)
+.++++|++|++++| .++ .++..+. .+++|+.|++++|+..+ .+..+..+++|++|+++ +|
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N 552 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFN-KLT--KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPLNSSTLKGFGIRNQRDAQGN 552 (636)
T ss_dssp EETTEECTTGGGCCEEECCSS-CCC--BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGGGCSSCCEEECCSCBCTTCC
T ss_pred ccccccccccCCccEEECcCC-cCC--ccChhhhhccCCCcCEEECCCCCCCC--cChhhhcCCCCCEEECCCCcccccC
Confidence 222336777777776 454 3555554 67777777777776554 25566677777777774 45
Q ss_pred cccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchH----HHHHHHhhCCCc---cEEE
Q 003270 588 FLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS----AIEELLAYCTHL---THVS 659 (835)
Q Consensus 588 ~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~----~~~~~l~~~~~L---~~L~ 659 (835)
++.+ +|..+..+++|++|++++|+ ++.. +..+ .++|+.|++++|++... ..+........+ +..+
T Consensus 553 ~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~i-p~~~-----~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 625 (636)
T 4eco_A 553 RTLREWPEGITLCPSLTQLQIGSND-IRKV-NEKI-----TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625 (636)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSC-CCBC-CSCC-----CTTCCEEECCSCTTCEEECTTTHHHHHTTCCEEECCTTSE
T ss_pred cccccChHHHhcCCCCCEEECCCCc-CCcc-CHhH-----hCcCCEEECcCCCCccccHHhcchhhhcccceeecCCccc
Confidence 5553 66677778888888888877 6433 3322 36788888888855431 234443333222 3345
Q ss_pred ccCCCCC
Q 003270 660 LNGCGNM 666 (835)
Q Consensus 660 l~~~~~~ 666 (835)
+.+|+.+
T Consensus 626 i~~C~~L 632 (636)
T 4eco_A 626 IRGCDAL 632 (636)
T ss_dssp EESCGGG
T ss_pred cCCCccc
Confidence 6667644
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-32 Score=305.43 Aligned_cols=463 Identities=13% Similarity=0.101 Sum_probs=235.8
Q ss_pred eEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccC
Q 003270 101 TEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITK 180 (835)
Q Consensus 101 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~ 180 (835)
+++++++ +.+.. +|..+. ++|++|++++|.+.+..+.+|..+++|++|++++|.+++..|..+.++++|++|++++
T Consensus 3 ~~l~ls~-n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 78 (520)
T 2z7x_B 3 FLVDRSK-NGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78 (520)
T ss_dssp CEEECTT-SCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred ceEecCC-CCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence 4566776 34543 333333 6788888888888777777788888888888888887776677777777788888777
Q ss_pred cccccccc-CCCCCcEEEecccchH-----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCC--CEEeCCCCCCC--
Q 003270 181 CRVMRVSI-RCPQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL--ESLDMSNCSCV-- 250 (835)
Q Consensus 181 ~~~~~~~~-~l~~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L--~~L~L~~~~~l-- 250 (835)
|.+..+.. .+++|++|++++|.+. ..++.+++|++|++++| .++. ..+..+++| ++|++++|. +
T Consensus 79 N~l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n-~l~~----~~~~~l~~L~L~~L~l~~n~-l~~ 152 (520)
T 2z7x_B 79 NKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTT-HLEK----SSVLPIAHLNISKVLLVLGE-TYG 152 (520)
T ss_dssp SCCCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEES-SCCG----GGGGGGTTSCEEEEEEEECT-TTT
T ss_pred CceeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCc-ccch----hhccccccceeeEEEeeccc-ccc
Confidence 77665432 3455555555555432 24455555555555554 2432 123444444 555555554 3
Q ss_pred ChHHHHHHHHhCC-CCcEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccC
Q 003270 251 SDESLREIALSCA-NLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLEL 329 (835)
Q Consensus 251 ~~~~~~~~~~~~~-~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 329 (835)
.+..+..+. .+. ....+++++|. .........+..+++|+.+++++|.....
T Consensus 153 ~~~~~~~l~-~l~~~~l~l~l~~n~---------------------~~~~~~~~~~~~l~~L~~L~l~~n~~~~~----- 205 (520)
T 2z7x_B 153 EKEDPEGLQ-DFNTESLHIVFPTNK---------------------EFHFILDVSVKTVANLELSNIKCVLEDNK----- 205 (520)
T ss_dssp SSCCTTTTT-TCCEEEEEEECCSSS---------------------CCCCCCCCCCTTCSEEEECCEEECCSTTT-----
T ss_pred ccccccccc-ccccceEEEEeccCc---------------------chhhhhhhhhhcccceeeccccccccccc-----
Confidence 111111111 110 01122222221 00000011122233333333333220000
Q ss_pred cccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchh
Q 003270 330 PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 409 (835)
Q Consensus 330 ~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~ 409 (835)
|. .+.+. +. .+..+++|+.++++++.+++..+....... .+++|++|++++ +.+++.
T Consensus 206 ----------~~-----~~~~~-~~--~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~----~~~~L~~L~l~~-n~l~~~ 262 (520)
T 2z7x_B 206 ----------CS-----YFLSI-LA--KLQTNPKLSNLTLNNIETTWNSFIRILQLV----WHTTVWYFSISN-VKLQGQ 262 (520)
T ss_dssp ----------TH-----HHHHH-HH--GGGGCTTCCEEEEEEEEEEHHHHHHHHHHH----HTSSCSEEEEEE-EEEESC
T ss_pred ----------cc-----eeecc-hh--hhccccchhhccccccccCHHHHHHHHHHh----hhCcccEEEeec-ccccCc
Confidence 00 00000 00 245566666666666666654322211110 235777777777 466655
Q ss_pred hhhhccCC--CCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCcccccccccccc
Q 003270 410 VCEVFSDG--GGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQ 487 (835)
Q Consensus 410 ~~~~~~~~--~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~ 487 (835)
.|..+... ..+++|+.++++++. + .++.. .+..+ ....+++.++++++.-.. ...
T Consensus 263 ~p~~~~~~~~~~l~~L~~l~l~~n~-~-~~p~~-------------~~~~~-~~~~~L~~L~l~~n~l~~-~~~------ 319 (520)
T 2z7x_B 263 LDFRDFDYSGTSLKALSIHQVVSDV-F-GFPQS-------------YIYEI-FSNMNIKNFTVSGTRMVH-MLC------ 319 (520)
T ss_dssp CCCCCCCCCSCCCCEEEEEEEEECC-C-CSCTH-------------HHHHH-HHTCCCSEEEEESSCCCC-CCC------
T ss_pred cccchhhcccccCceeEeccccccc-e-ecchh-------------hhhcc-cccCceeEEEcCCCcccc-ccc------
Confidence 44433111 456667777776654 2 22100 00000 011345555555543111 000
Q ss_pred ccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCcc-chhhhhhhcCCCccEEeccCCCCcC
Q 003270 488 SLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD-DCLSATTTSCPLIESLILMSCQSIG 566 (835)
Q Consensus 488 ~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~-~~~~~~~~~~~~L~~L~l~~~~~~~ 566 (835)
...+++|+.+++++|.++ +.+|..+..+++|++|++++| .+++ ..++..+..+++|++|++++|...+
T Consensus 320 ---~~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 320 ---PSKISPFLHLDFSNNLLT-------DTVFENCGHLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp ---CSSCCCCCEEECCSSCCC-------TTTTTTCCCCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSCCBC
T ss_pred ---hhhCCcccEEEeECCccC-------hhhhhhhccCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCcCCc
Confidence 145566666666666664 445666666777777777776 3432 1344556667777777777766554
Q ss_pred chhhHhhhhccccceeeecCccccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHH
Q 003270 567 PDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAI 645 (835)
Q Consensus 567 ~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~ 645 (835)
......+..+++|++|++++|.+++ +|..+. ++|++|++++|. ++.. +..+ ..+++|++|++++|+++. +
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~-l~~i-p~~~---~~l~~L~~L~L~~N~l~~--l 459 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNK-IKSI-PKQV---VKLEALQELNVASNQLKS--V 459 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSC-CCCC-CGGG---GGCTTCCEEECCSSCCCC--C
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCc-cccc-chhh---hcCCCCCEEECCCCcCCc--c
Confidence 3322335566677777777776654 222221 567777777766 5532 2222 356677777777776664 3
Q ss_pred HH-HHhhCCCccEEEccCCCCC
Q 003270 646 EE-LLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 646 ~~-~l~~~~~L~~L~l~~~~~~ 666 (835)
+. .+..+++|++|++++|+-.
T Consensus 460 ~~~~~~~l~~L~~L~l~~N~~~ 481 (520)
T 2z7x_B 460 PDGIFDRLTSLQKIWLHTNPWD 481 (520)
T ss_dssp CTTTTTTCTTCCEEECCSSCBC
T ss_pred CHHHhccCCcccEEECcCCCCc
Confidence 33 3566677777777776643
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.5e-32 Score=314.62 Aligned_cols=194 Identities=16% Similarity=0.141 Sum_probs=130.7
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEe-cCCCCCccccccc----------------------------------
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNV-NDATLGNGVQEIP---------------------------------- 167 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l-~~~~~~~~~~~~~---------------------------------- 167 (835)
.+++.|+|+++.+.+.+|.+++++++|++|++ ++|.+.+..+-..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 8886655422110
Q ss_pred -----------------ccCCcccEEeccC--cccccc---ccCCCCCcEEEecccchHH--------------------
Q 003270 168 -----------------INHDQLRRLEITK--CRVMRV---SIRCPQLEHLSLKRSNMAQ-------------------- 205 (835)
Q Consensus 168 -----------------~~l~~L~~L~l~~--~~~~~~---~~~l~~L~~L~l~~~~i~~-------------------- 205 (835)
.....++.+.+.. |.+..+ ..++++|++|++++|.+..
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 0111222222222 333333 3478999999999987654
Q ss_pred -Hhh--cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCCh-HHHHHHHHhCC-------CCcEEecCCCC
Q 003270 206 -AVL--NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSD-ESLREIALSCA-------NLRILNSSYCP 274 (835)
Q Consensus 206 -~~~--~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~-~~~~~~~~~~~-------~L~~L~l~~~~ 274 (835)
.++ .+++|++|++++|. +. +.+|..++++++|++|++++|..+++ ..|..+. .++ +|+.|++++|.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~-l~-~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~-~L~~~~~~l~~L~~L~Ls~N~ 559 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCP-NM-TQLPDFLYDLPELQSLNIACNRGISAAQLKADWT-RLADDEDTGPKIQIFYMGYNN 559 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCT-TC-CSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHH-HHHHCTTTTTTCCEEECCSSC
T ss_pred hhhhhccCCCCCEEECcCCC-CC-ccChHHHhCCCCCCEEECcCCCCcccccchHHHH-hhhhcccccCCccEEEeeCCc
Confidence 233 78899999999884 33 25677888999999999999975676 6666665 443 77777777775
Q ss_pred --CCCc--cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcc
Q 003270 275 --NISL--ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLL 322 (835)
Q Consensus 275 --~l~~--~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 322 (835)
.+|. .+..+++|++|++++| .+. ..+ .++.+++|++|++++|.+.
T Consensus 560 L~~ip~~~~l~~L~~L~~L~Ls~N-~l~-~lp-~~~~L~~L~~L~Ls~N~l~ 608 (876)
T 4ecn_A 560 LEEFPASASLQKMVKLGLLDCVHN-KVR-HLE-AFGTNVKLTDLKLDYNQIE 608 (876)
T ss_dssp CCBCCCHHHHTTCTTCCEEECTTS-CCC-BCC-CCCTTSEESEEECCSSCCS
T ss_pred CCccCChhhhhcCCCCCEEECCCC-Ccc-cch-hhcCCCcceEEECcCCccc
Confidence 4555 5556666666666665 444 222 5555566666666665543
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-31 Score=301.90 Aligned_cols=65 Identities=15% Similarity=0.154 Sum_probs=51.1
Q ss_pred ccccEEecccccchhhhhh---cCCccceeecccCcCChhHHHHH-HhcCCCcceeecccccCCCchHHHHH
Q 003270 751 FNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSCNIDEEGVESA-ITQCGMLETLDVRFCPKICSTSMGRL 818 (835)
Q Consensus 751 ~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~~i~~~~l~~~-~~~~~~L~~l~l~~c~~l~~~~~~~~ 818 (835)
++|+.|++++|. ++.+|. .+++|++|++++|+++ .+|.. +..+++|++|++++||..|++.+..+
T Consensus 421 ~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~l~--~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~~~ 489 (520)
T 2z7x_B 421 PRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQLK--SVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 489 (520)
T ss_dssp TTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSCCC--CCCTTTTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred ccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCcCC--ccCHHHhccCCcccEEECcCCCCcccCCchHH
Confidence 466666776663 445552 5789999999999986 56654 88999999999999999999887776
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-30 Score=298.47 Aligned_cols=492 Identities=19% Similarity=0.230 Sum_probs=289.7
Q ss_pred HHhhhc-cccchhhhHHHHHHHHhhcCCCCceeeccCCCC-CCHHHHHHHHhcCCCeeEEEccCCcchh-----------
Q 003270 46 KQKIWK-SGWILQMTYCIWQWRAASAHEDFWRCLNFENRK-ISVEQFEDVCQRYPNATEVNIYGAPAIH----------- 112 (835)
Q Consensus 46 ~~~~~~-~~~~~~~~~v~~~W~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~L~l~~~~~~~----------- 112 (835)
++..+. .....+++.|||+|+++. ...|..+++.... ... ...+++++++++|++++++.+.
T Consensus 17 If~~L~~~~d~~~~s~vck~W~~~~--~~~~~~l~~~~~~~~~~---~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~ 91 (594)
T 2p1m_B 17 VFSFIQLDKDRNSVSLVCKSWYEIE--RWCRRKVFIGNCYAVSP---ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGG 91 (594)
T ss_dssp HHHTCCCHHHHHHHHTSCHHHHHHH--HHHCCEEEESSTTSSCH---HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCC
T ss_pred HHhhcCCchhHHHHHHHHHHHHHhh--hhhceEEeeccccccCH---HHHHhhCCCceEEeccCCCchhhcccccccccc
Confidence 334444 334567788999999873 4456777776532 222 3567899999999999965432
Q ss_pred ---hHHHHHHhhCCcCcEEEcCCcccChhhHHhhc-CCCCCCEEEecCCC-CCc-ccccccccCCcccEEeccCcccccc
Q 003270 113 ---LLVMKAVSLLRNLEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDAT-LGN-GVQEIPINHDQLRRLEITKCRVMRV 186 (835)
Q Consensus 113 ---~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~l~~~~-~~~-~~~~~~~~l~~L~~L~l~~~~~~~~ 186 (835)
.++......+++|++|++++|.+++..+..+. .+++|++|++++|. +++ .++....++++|++|++++|.+...
T Consensus 92 ~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~ 171 (594)
T 2p1m_B 92 YVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV 171 (594)
T ss_dssp BCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECC
T ss_pred hhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCc
Confidence 23455567889999999999999988887776 68999999999883 432 2555566677777777777765431
Q ss_pred ccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCC-CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC
Q 003270 187 SIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCH-KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL 265 (835)
Q Consensus 187 ~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~-~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L 265 (835)
. ...+......+++|++|++++|. .+.+..+...+.++++|++|++++|..+++ +..+...+++|
T Consensus 172 ~------------~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~--l~~~~~~~~~L 237 (594)
T 2p1m_B 172 S------------GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK--LATLLQRAPQL 237 (594)
T ss_dssp C------------GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH--HHHHHHHCTTC
T ss_pred c------------hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH--HHHHHhcCCcc
Confidence 1 00122233456677777777764 355566666667778888888887753332 44444477777
Q ss_pred cEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEE-ccCCCccccccccCcccceeecccccccc
Q 003270 266 RILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLE-LDNCNLLTSVSLELPRLQNIRLVHCRKFA 344 (835)
Q Consensus 266 ~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~-l~~~~~~~~~~~~~~~L~~L~~~~~~~l~ 344 (835)
++|+++.+.. .+..+ .+. ..+..+.++++|+.|. +.+.. .+.++.
T Consensus 238 ~~L~l~~~~~--------------~~~~~-~~~-~l~~~l~~~~~L~~Ls~~~~~~-~~~l~~----------------- 283 (594)
T 2p1m_B 238 EELGTGGYTA--------------EVRPD-VYS-GLSVALSGCKELRCLSGFWDAV-PAYLPA----------------- 283 (594)
T ss_dssp SEEECSBCCC--------------CCCHH-HHH-HHHHHHHTCTTCCEEECCBTCC-GGGGGG-----------------
T ss_pred eEcccccccC--------------ccchh-hHH-HHHHHHhcCCCcccccCCcccc-hhhHHH-----------------
Confidence 7777765531 00000 111 1223444555555551 21110 000000
Q ss_pred chhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCcc
Q 003270 345 DLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLK 424 (835)
Q Consensus 345 ~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~ 424 (835)
.+..+++|++|++++|.+++ ..+..+...+++|++|++++| +++.....+. ..+++|+
T Consensus 284 ------------~~~~~~~L~~L~L~~~~l~~------~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~--~~~~~L~ 341 (594)
T 2p1m_B 284 ------------VYSVCSRLTTLNLSYATVQS------YDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLA--STCKDLR 341 (594)
T ss_dssp ------------GHHHHTTCCEEECTTCCCCH------HHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHH--HHCTTCC
T ss_pred ------------HHHhhCCCCEEEccCCCCCH------HHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHH--HhCCCCC
Confidence 01234444445454444332 112222334555555555553 3333222221 2355555
Q ss_pred EEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCccccccc
Q 003270 425 SLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 504 (835)
Q Consensus 425 ~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~ 504 (835)
+|++.+|..... .+|..+.+.+ +..+ ...|++|+.+.+..
T Consensus 342 ~L~L~~~~~~g~----------------------------------~~~~~l~~~~-----l~~l-~~~~~~L~~L~~~~ 381 (594)
T 2p1m_B 342 ELRVFPSEPFVM----------------------------------EPNVALTEQG-----LVSV-SMGCPKLESVLYFC 381 (594)
T ss_dssp EEEEECSCTTCS----------------------------------SCSSCCCHHH-----HHHH-HHHCTTCCEEEEEE
T ss_pred EEEEecCccccc----------------------------------ccCCCCCHHH-----HHHH-HHhchhHHHHHHhc
Confidence 555544320000 0000000000 0000 11233344433333
Q ss_pred ceeEEEeecCCccccccc-ccCCCcceEecc-----cCCCCc----cchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 505 LHMVVLELKGCGVLSDAY-INCPLLTSLDAS-----FCSQLK----DDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 505 ~~l~~l~~~~~~~l~~~~-~~~~~L~~L~ls-----~~~~l~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
+.++ +.....+ ..+++|++|+++ +|..++ +.+++..+..+++|++|++++ .+.+.++..+.
T Consensus 382 ~~l~-------~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~ 452 (594)
T 2p1m_B 382 RQMT-------NAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIG 452 (594)
T ss_dssp SCCC-------HHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHH
T ss_pred CCcC-------HHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHH
Confidence 3321 1111122 357788888888 455676 556777788999999999977 46666677776
Q ss_pred h-ccccceeeecCccccC--chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhh
Q 003270 575 S-LQNLTMLDLSYTFLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAY 651 (835)
Q Consensus 575 ~-l~~L~~L~Ls~~~~~~--l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 651 (835)
. +++|+.|++++|.+++ +......+++|++|++++|+ +++..+..+ ...+++|+.|++++|+++..++......
T Consensus 453 ~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~-~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~~ 529 (594)
T 2p1m_B 453 TYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLAN--ASKLETMRSLWMSSCSVSFGACKLLGQK 529 (594)
T ss_dssp HHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS-CCHHHHHHT--GGGGGGSSEEEEESSCCBHHHHHHHHHH
T ss_pred HhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC-CcHHHHHHH--HHhCCCCCEEeeeCCCCCHHHHHHHHHh
Confidence 6 8999999999999875 33344779999999999999 676666544 2458899999999999987666665578
Q ss_pred CCCccEEEccCCC
Q 003270 652 CTHLTHVSLNGCG 664 (835)
Q Consensus 652 ~~~L~~L~l~~~~ 664 (835)
+++|+...+..+.
T Consensus 530 lp~l~i~~~~~~~ 542 (594)
T 2p1m_B 530 MPKLNVEVIDERG 542 (594)
T ss_dssp CTTEEEEEECSSS
T ss_pred CCCCEEEEecCCC
Confidence 8998877776554
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-30 Score=299.28 Aligned_cols=244 Identities=14% Similarity=0.159 Sum_probs=156.1
Q ss_pred cchhhhHHHHHHHHhhcCCCCceeeccCC-CCCCHHHHHHHHhcCCCeeEEEccCCcchh--------------hHHHHH
Q 003270 54 WILQMTYCIWQWRAASAHEDFWRCLNFEN-RKISVEQFEDVCQRYPNATEVNIYGAPAIH--------------LLVMKA 118 (835)
Q Consensus 54 ~~~~~~~v~~~W~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~--------------~~~~~~ 118 (835)
...+++.|||+|+.+.. ..|..+...+ .... ....+++++++++|++++++.+. .++...
T Consensus 33 d~~~~s~vck~W~~~~~--~~~~~l~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l 107 (592)
T 3ogk_B 33 DRDSASLVCRRWFKIDS--ETREHVTMALCYTAT---PDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEI 107 (592)
T ss_dssp HHHHHTTSCHHHHHHHH--HHCCEEEESCGGGSC---HHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHH
T ss_pred HHHHHHHHhHHHHHhhh--ccccEEEEeeccccC---hHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHH
Confidence 35566889999998742 2233444333 1222 24667889999999998865433 234455
Q ss_pred HhhCCcCcEEEcCCcccChhhHHhhcC-CCC-CCEEEecCCCC-C-cccccccccCCcccEEeccCccccccccCCCCCc
Q 003270 119 VSLLRNLEALTLGRGQLGDAFFHALAD-CSM-LKSLNVNDATL-G-NGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLE 194 (835)
Q Consensus 119 l~~~~~L~~L~l~~~~i~~~~~~~l~~-~~~-L~~L~l~~~~~-~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~ 194 (835)
...+++|++|++++|.+++..+..+.. ++. |++|++++|.. + ..++....++++|++|++++|.+....
T Consensus 108 ~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~------- 180 (592)
T 3ogk_B 108 SNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKD------- 180 (592)
T ss_dssp HHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCC-------
T ss_pred HhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcc-------
Confidence 557888889998888888877777665 444 88888888751 1 123333344555555555555432110
Q ss_pred EEEecccchHHHhhcCCCCcEEeecCCCCCC---HHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecC
Q 003270 195 HLSLKRSNMAQAVLNCPLLHLLDIASCHKLS---DAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 271 (835)
Q Consensus 195 ~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~---~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 271 (835)
...+...+..+++|++|++++|. ++ ...++..+.++++|++|++++|. +.+ .+..+ ..+++|++|+++
T Consensus 181 -----~~~l~~~~~~~~~L~~L~L~~n~-~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~-l~~~~-~~~~~L~~L~l~ 251 (592)
T 3ogk_B 181 -----GKWLHELAQHNTSLEVLNFYMTE-FAKISPKDLETIARNCRSLVSVKVGDFE-ILE-LVGFF-KAAANLEEFCGG 251 (592)
T ss_dssp -----SHHHHHHHHHCCCCCEEECTTCC-CSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG-GHHHH-HHCTTCCEEEEC
T ss_pred -----hhHHHHHHhcCCCccEEEeeccC-CCccCHHHHHHHHhhCCCCcEEeccCcc-HHH-HHHHH-hhhhHHHhhccc
Confidence 00144566788889999998873 43 56788888899999999999987 554 33444 488999999998
Q ss_pred CCC------CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCC
Q 003270 272 YCP------NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCN 320 (835)
Q Consensus 272 ~~~------~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 320 (835)
... .....+..+++|+.|.+.++ .....+..+..+++|++|++++|.
T Consensus 252 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~l~~~~~~~~~L~~L~Ls~~~ 304 (592)
T 3ogk_B 252 SLNEDIGMPEKYMNLVFPRKLCRLGLSYM--GPNEMPILFPFAAQIRKLDLLYAL 304 (592)
T ss_dssp BCCCCTTCTTSSSCCCCCTTCCEEEETTC--CTTTGGGGGGGGGGCCEEEETTCC
T ss_pred ccccccchHHHHHHhhccccccccCcccc--chhHHHHHHhhcCCCcEEecCCCc
Confidence 543 22234556777777777663 223334445566677777777665
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-30 Score=295.64 Aligned_cols=428 Identities=15% Similarity=0.114 Sum_probs=219.2
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc-CCCCCcEEEeccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~L~~L~l~~~ 201 (835)
++|++|++++|.+++..+.+|+.+++|++|++++|.+++..|..+.++++|++|++++|.+..+.. .+++|++|++++|
T Consensus 52 ~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~l~~L~~L~Ls~N 131 (562)
T 3a79_B 52 PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFN 131 (562)
T ss_dssp TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCEECSCCCTTCSEEECCSS
T ss_pred CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 455555555555555444555555555555555555554444455555555555555555544322 3555555555555
Q ss_pred chH-----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCC--CEEeCCCCCCC--ChHHHHHHHHhCC-CCcEEecC
Q 003270 202 NMA-----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQL--ESLDMSNCSCV--SDESLREIALSCA-NLRILNSS 271 (835)
Q Consensus 202 ~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L--~~L~L~~~~~l--~~~~~~~~~~~~~-~L~~L~l~ 271 (835)
.+. ..++.+++|++|++++| .++.. .+..+++| ++|++++|. + ++..+..+. .+. ..-.++++
T Consensus 132 ~l~~l~~p~~~~~l~~L~~L~L~~n-~l~~~----~~~~l~~L~L~~L~L~~n~-l~~~~~~~~~l~-~l~~~~l~l~l~ 204 (562)
T 3a79_B 132 DFDVLPVCKEFGNLTKLTFLGLSAA-KFRQL----DLLPVAHLHLSCILLDLVS-YHIKGGETESLQ-IPNTTVLHLVFH 204 (562)
T ss_dssp CCSBCCCCGGGGGCTTCCEEEEECS-BCCTT----TTGGGTTSCEEEEEEEESS-CCCCSSSCCEEE-ECCEEEEEEEEC
T ss_pred CccccCchHhhcccCcccEEecCCC-ccccC----chhhhhhceeeEEEeeccc-ccccccCccccc-ccCcceEEEEec
Confidence 443 24555566666666655 34321 23334444 666666555 3 222111111 111 00123333
Q ss_pred CCC---CCCc-cccCCCCCcEEecCCCCCC---ChhhHHHhhhccCccEEEccCCCcccccccc------Ccccceeecc
Q 003270 272 YCP---NISL-ESVRLPMLTVLQLHSCEGI---TSASMAAISHSYMLEVLELDNCNLLTSVSLE------LPRLQNIRLV 338 (835)
Q Consensus 272 ~~~---~l~~-~~~~~~~L~~L~l~~~~~~---~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~------~~~L~~L~~~ 338 (835)
+|. .++. .+..+++|+.++++++... .......+..+++|+++++.++...+..... .++++.|.+.
T Consensus 205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~ 284 (562)
T 3a79_B 205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIY 284 (562)
T ss_dssp SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEE
T ss_pred CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEe
Confidence 333 1111 2234555555655553100 0112233444555555555544432211110 1133333322
Q ss_pred ccccccchhhcccccce-e--ee-----ccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhh
Q 003270 339 HCRKFADLNLRAMMLSS-I--MV-----SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSV 410 (835)
Q Consensus 339 ~~~~l~~l~l~~~~l~~-~--~l-----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~ 410 (835)
+ +.+++ + .+ ..++.|+.+++..+.+ . .+. ..+..+. ...+|++|++++| .+....
T Consensus 285 ~-----------n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~--~p~-~~~~~~~-~~~~L~~L~l~~n-~~~~~~ 347 (562)
T 3a79_B 285 N-----------LTITERIDREEFTYSETALKSLMIEHVKNQVF-L--FSK-EALYSVF-AEMNIKMLSISDT-PFIHMV 347 (562)
T ss_dssp E-----------EEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-S--SCH-HHHHHHH-HTCCCSEEEEESS-CCCCCC
T ss_pred c-----------cEeeccccchhhhcccccchheehhhccccee-e--cCh-hhhhhhh-ccCcceEEEccCC-Cccccc
Confidence 2 22211 0 01 3344444444444444 1 110 1111111 2357888888884 554321
Q ss_pred hhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccc
Q 003270 411 CEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLN 490 (835)
Q Consensus 411 ~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~ 490 (835)
+ ...+++|++|+++++. ++.. .|..
T Consensus 348 ---~--~~~l~~L~~L~l~~n~-l~~~--------------------------------------------~~~~----- 372 (562)
T 3a79_B 348 ---C--PPSPSSFTFLNFTQNV-FTDS--------------------------------------------VFQG----- 372 (562)
T ss_dssp ---C--CSSCCCCCEEECCSSC-CCTT--------------------------------------------TTTT-----
T ss_pred ---C--ccCCCCceEEECCCCc-cccc--------------------------------------------hhhh-----
Confidence 1 1467788888888775 3211 1111
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++|+.+++++|+++.+ ..+|..+..+++|++|++++| .++.......+..+++|++|++++|...+.. +
T Consensus 373 ~~~l~~L~~L~L~~N~l~~~-----~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~ 445 (562)
T 3a79_B 373 CSTLKRLQTLILQRNGLKNF-----FKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNMLTGSV-F 445 (562)
T ss_dssp CCSCSSCCEEECCSSCCCBT-----THHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSCCCGGG-G
T ss_pred hcccCCCCEEECCCCCcCCc-----ccchhhhcCCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCCCCcch-h
Confidence 45556666666666665310 234456777788888888887 3433222234567788888888888754322 2
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
..+. ++|++|++++|+++.+|..+..+++|++|++++|+ ++...... +..+++|+.|++++|++..
T Consensus 446 ~~l~--~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~---~~~l~~L~~L~l~~N~~~c 511 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQ-LKSVPDGV---FDRLTSLQYIWLHDNPWDC 511 (562)
T ss_dssp SSCC--TTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTS---TTTCTTCCCEECCSCCBCC
T ss_pred hhhc--CcCCEEECCCCcCcccChhhcCCCCCCEEECCCCC-CCCCCHHH---HhcCCCCCEEEecCCCcCC
Confidence 2222 68888888888888888876788889999998887 77543332 3678888888888888764
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.3e-30 Score=289.74 Aligned_cols=464 Identities=14% Similarity=0.087 Sum_probs=290.6
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccc----ccCCCCCcEE
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV----SIRCPQLEHL 196 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~l~~L~~L 196 (835)
.+...++++++++.+++ +|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+..+ ..++++|++|
T Consensus 29 ~~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 29 SNELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp ----CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred ccCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 34455899999999885 666553 8999999999999887778899999999999999988765 2357888888
Q ss_pred EecccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC--cEEecCC
Q 003270 197 SLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL--RILNSSY 272 (835)
Q Consensus 197 ~l~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L--~~L~l~~ 272 (835)
++++|.+. ... .+++|++|++++| .++...+|..++++++|++|++++|. ++...+. .+++| +.|++++
T Consensus 106 ~Ls~N~l~~lp~~-~l~~L~~L~Ls~N-~l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~~----~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 106 DVSHNRLQNISCC-PMASLRHLDLSFN-DFDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDLL----PVAHLHLSCILLDL 178 (562)
T ss_dssp ECTTSCCCEECSC-CCTTCSEEECCSS-CCSBCCCCGGGGGCTTCCEEEEECSB-CCTTTTG----GGTTSCEEEEEEEE
T ss_pred ECCCCcCCccCcc-ccccCCEEECCCC-CccccCchHhhcccCcccEEecCCCc-cccCchh----hhhhceeeEEEeec
Confidence 88888776 111 6778888888887 45532334567777888888888877 5542222 33444 6666666
Q ss_pred CCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhcc-CccEEEccCCCcccccccc----Ccccceeecccccc-ccch
Q 003270 273 CPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSY-MLEVLELDNCNLLTSVSLE----LPRLQNIRLVHCRK-FADL 346 (835)
Q Consensus 273 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~----~~~L~~L~~~~~~~-l~~l 346 (835)
|... ..+..+..+..+. ..-++++++|.+.+.++.. +++++.+++.+... .+.
T Consensus 179 n~l~--------------------~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~- 237 (562)
T 3a79_B 179 VSYH--------------------IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQR- 237 (562)
T ss_dssp SSCC--------------------CCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHH-
T ss_pred cccc--------------------ccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccch-
Confidence 5310 0122222222211 0113344444433322211 12222222221100 000
Q ss_pred hhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEE
Q 003270 347 NLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSL 426 (835)
Q Consensus 347 ~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L 426 (835)
+.+ .+. .+...+.++.+++..+.+++..+..... .. ..++|++|++++ +.+++..|..+... ..++|+.|
T Consensus 238 -l~~-~~~--~l~~l~~L~~L~L~~~~l~~~~~~~~~~---~~-~~~~L~~L~l~~-n~l~~~ip~~~~~~-~~~~L~~L 307 (562)
T 3a79_B 238 -LMT-FLS--ELTRGPTLLNVTLQHIETTWKCSVKLFQ---FF-WPRPVEYLNIYN-LTITERIDREEFTY-SETALKSL 307 (562)
T ss_dssp -HHH-HHH--HHHSCSSCEEEEEEEEEECHHHHHHHHH---HH-TTSSEEEEEEEE-EEECSCCCCCCCCC-CSCSCCEE
T ss_pred -HHH-HHH--HHhccCcceEEEecCCcCcHHHHHHHHH---hh-hcccccEEEEec-cEeeccccchhhhc-ccccchhe
Confidence 000 000 3566777788888777776643222211 11 335899999988 47776555443111 12344444
Q ss_pred EecCCCC--CccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCccccccc
Q 003270 427 VLDNCEG--LTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEA 504 (835)
Q Consensus 427 ~l~~~~~--l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~ 504 (835)
.+.++.. + .++. ..+..+ ....+++.++++++.-.. .. ....+++|+.+++++
T Consensus 308 ~~~~~~~~~~-~~p~-------------~~~~~~-~~~~~L~~L~l~~n~~~~------~~----~~~~l~~L~~L~l~~ 362 (562)
T 3a79_B 308 MIEHVKNQVF-LFSK-------------EALYSV-FAEMNIKMLSISDTPFIH------MV----CPPSPSSFTFLNFTQ 362 (562)
T ss_dssp EEEEEEECCC-SSCH-------------HHHHHH-HHTCCCSEEEEESSCCCC------CC----CCSSCCCCCEEECCS
T ss_pred ehhhccccee-ecCh-------------hhhhhh-hccCcceEEEccCCCccc------cc----CccCCCCceEEECCC
Confidence 4433220 1 1110 000000 123567788887764211 10 026788999999999
Q ss_pred ceeEEEeecCCcccccccccCCCcceEecccCCCCccc-hhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceee
Q 003270 505 LHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDD-CLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLD 583 (835)
Q Consensus 505 ~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 583 (835)
|.++ +.+|..+..+++|++|++++| .++.- .++..+..+++|++|++++|...+......+..+++|++|+
T Consensus 363 n~l~-------~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~ 434 (562)
T 3a79_B 363 NVFT-------DSVFQGCSTLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLN 434 (562)
T ss_dssp SCCC-------TTTTTTCCSCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEE
T ss_pred Cccc-------cchhhhhcccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEE
Confidence 9986 678888999999999999998 56542 34566889999999999999976534344578899999999
Q ss_pred ecCccccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH-HhhCCCccEEEcc
Q 003270 584 LSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL-LAYCTHLTHVSLN 661 (835)
Q Consensus 584 Ls~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~-l~~~~~L~~L~l~ 661 (835)
+++|.+++ ++..+. ++|++|++++|. ++.. +..+ ..+++|++|++++|+++. +|.. +..+++|++|+++
T Consensus 435 l~~n~l~~~~~~~l~--~~L~~L~L~~N~-l~~i-p~~~---~~l~~L~~L~L~~N~l~~--l~~~~~~~l~~L~~L~l~ 505 (562)
T 3a79_B 435 LSSNMLTGSVFRCLP--PKVKVLDLHNNR-IMSI-PKDV---THLQALQELNVASNQLKS--VPDGVFDRLTSLQYIWLH 505 (562)
T ss_dssp CCSSCCCGGGGSSCC--TTCSEEECCSSC-CCCC-CTTT---TSSCCCSEEECCSSCCCC--CCTTSTTTCTTCCCEECC
T ss_pred CCCCCCCcchhhhhc--CcCCEEECCCCc-Cccc-Chhh---cCCCCCCEEECCCCCCCC--CCHHHHhcCCCCCEEEec
Confidence 99999975 333222 699999999997 8743 3332 578999999999999985 4544 8889999999999
Q ss_pred CCCCCc
Q 003270 662 GCGNMH 667 (835)
Q Consensus 662 ~~~~~~ 667 (835)
+|+-..
T Consensus 506 ~N~~~c 511 (562)
T 3a79_B 506 DNPWDC 511 (562)
T ss_dssp SCCBCC
T ss_pred CCCcCC
Confidence 998543
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-28 Score=286.13 Aligned_cols=499 Identities=16% Similarity=0.119 Sum_probs=308.0
Q ss_pred ceeeccCCCCCCHHHH-HHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 75 WRCLNFENRKISVEQF-EDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 75 ~~~l~~~~~~~~~~~~-~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
-+.++++...++. + ...++.++++++|++++ +.+....+.+|..+++|++|+|++|.+++..+.+|+++++|++|+
T Consensus 54 ~~~LdLs~N~i~~--l~~~~f~~l~~L~~L~Ls~-N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 54 TKNLDLSFNPLRH--LGSYSFFSFPELQVLDLSR-CEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CCEEECTTSCCCE--ECTTTTTTCTTCCEEECTT-CCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CCEEEeeCCCCCC--CCHHHHhCCCCCCEEECCC-CcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 3455555433321 1 13467889999999999 578877677899999999999999999988888999999999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCcccccc-----ccCCCCCcEEEecccchH----HHhhcCCC----CcEEeecC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRV-----SIRCPQLEHLSLKRSNMA----QAVLNCPL----LHLLDIAS 220 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~~~l~~L~~L~l~~~~i~----~~~~~~~~----L~~L~l~~ 220 (835)
+++|.+++..+..++++++|++|++++|.+..+ ...+++|++|++++|.+. ..+..+.+ ...++++.
T Consensus 131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 131 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 999999876666789999999999999987543 346889999999998775 23333322 34677777
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCC-----CC----ccccCCCCCcEEec
Q 003270 221 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPN-----IS----LESVRLPMLTVLQL 291 (835)
Q Consensus 221 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~-----l~----~~~~~~~~L~~L~l 291 (835)
| .+. .++........++.+++.++. ............+..++...+..... +. ..+.....+....+
T Consensus 211 n-~l~--~i~~~~~~~~~~~~l~l~~n~-~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 211 N-PMN--FIQPGAFKEIRLHKLTLRNNF-DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp C-CCC--EECTTTTTTCEEEEEEEESCC-SSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred C-ccc--ccCcccccchhhhhhhhhccc-ccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 6 344 122233344566778888776 44444444444777776665543210 00 00111112222211
Q ss_pred CCC--CCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccccee-eeccCCCcceee
Q 003270 292 HSC--EGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRIN 368 (835)
Q Consensus 292 ~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~-~l~~~~~L~~L~ 368 (835)
... ..........+....+++.+++.++. +..+ .+..+..++.++
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--------------------------------~~~~~~~~~~~~L~~L~ 334 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVT--------------------------------IERVKDFSYNFGWQHLE 334 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCE--------------------------------EEECGGGGSCCCCSEEE
T ss_pred hhhhhcccccchhhhhhhhcccccccccccc--------------------------------cccccccccchhhhhhh
Confidence 110 00000111112222333333333322 1111 234455666666
Q ss_pred eccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEe
Q 003270 369 ITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLS 448 (835)
Q Consensus 369 l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~ 448 (835)
+.++.+.+.... .++.|+.+++.+ +.+.... ....+++|+.++++++. +.....
T Consensus 335 l~~~~~~~~~~~----------~l~~L~~l~l~~-n~~~~~~-----~~~~l~~L~~L~ls~n~-l~~~~~--------- 388 (635)
T 4g8a_A 335 LVNCKFGQFPTL----------KLKSLKRLTFTS-NKGGNAF-----SEVDLPSLEFLDLSRNG-LSFKGC--------- 388 (635)
T ss_dssp EESCEESSCCCC----------BCTTCCEEEEES-CCSCCBC-----CCCBCTTCCEEECCSSC-CBEEEE---------
T ss_pred cccccccCcCcc----------cchhhhhccccc-ccCCCCc-----ccccccccccchhhccc-cccccc---------
Confidence 666666554322 235666666666 3433221 11456677777776654 221110
Q ss_pred ccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCccc-ccccccCCC
Q 003270 449 LVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVL-SDAYINCPL 527 (835)
Q Consensus 449 l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l-~~~~~~~~~ 527 (835)
.........+++.+++..+.... .+. .+..+++|+.+++..+... ... +..+..+++
T Consensus 389 ------~~~~~~~~~~L~~L~~~~~~~~~----~~~-----~~~~l~~L~~l~l~~~~~~-------~~~~~~~~~~l~~ 446 (635)
T 4g8a_A 389 ------CSQSDFGTISLKYLDLSFNGVIT----MSS-----NFLGLEQLEHLDFQHSNLK-------QMSEFSVFLSLRN 446 (635)
T ss_dssp ------CCHHHHSCSCCCEEECCSCSEEE----ECS-----CCTTCTTCCEEECTTSEEE-------STTSSCTTTTCTT
T ss_pred ------cccchhhhhhhhhhhcccccccc----ccc-----cccccccccchhhhhcccc-------ccccccccccccc
Confidence 00111133445555554433211 111 1456677777777666553 222 234667788
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCc-hHHHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~ 606 (835)
++.+++++|. +. ...+..+..+++|+.|++++|.......+..+..+++|++|+|++|+++++ |..|.++++|++|+
T Consensus 447 l~~l~ls~n~-l~-~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~ 524 (635)
T 4g8a_A 447 LIYLDISHTH-TR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 524 (635)
T ss_dssp CCEEECTTSC-CE-ECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred cccccccccc-cc-cccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEE
Confidence 8888888873 32 334556677888888888888765554456788888888888888888876 44788888888888
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhC-CCccEEEccCCCCCc
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC-THLTHVSLNGCGNMH 667 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 667 (835)
|++|+ +++..+..+ ..+++|++|++++|+++. ..+..+..+ ++|++|++++|+-..
T Consensus 525 Ls~N~-l~~l~~~~~---~~l~~L~~L~Ls~N~l~~-~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 525 MSHNN-FFSLDTFPY---KCLNSLQVLDYSLNHIMT-SKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp CTTSC-CCBCCCGGG---TTCTTCCEEECTTSCCCB-CCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred CCCCc-CCCCChhHH---hCCCCCCEEECCCCcCCC-CCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 88887 777766554 778888888888888877 456666666 578888888887544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=8.1e-28 Score=276.60 Aligned_cols=78 Identities=22% Similarity=0.266 Sum_probs=56.3
Q ss_pred cccccEEeccccc----chhhhhhcCCccceeecccCcCChhHHHHHHhcCCCcceeecccccCCCchHHHHHHHhCCcc
Q 003270 750 CFNLCFLNLSNCC----SLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRAACPSL 825 (835)
Q Consensus 750 ~~~L~~L~l~~c~----~l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~~~p~l 825 (835)
+++|+.|++++|. .+..+...|++|++|+|++|++++.+++..+..+++|++|++++|+ +++.+...+++.+|.+
T Consensus 462 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~-it~~~~~~l~~~~p~l 540 (592)
T 3ogk_B 462 SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYR-ASMTGQDLMQMARPYW 540 (592)
T ss_dssp CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCB-CCTTCTTGGGGCCTTE
T ss_pred CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCc-CCHHHHHHHHHhCCCc
Confidence 4555556665554 1233445678888888888888877788877888888888888887 7777777777777776
Q ss_pred hhh
Q 003270 826 KRI 828 (835)
Q Consensus 826 ~~l 828 (835)
.-.
T Consensus 541 ~~~ 543 (592)
T 3ogk_B 541 NIE 543 (592)
T ss_dssp EEE
T ss_pred EEE
Confidence 543
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=5e-27 Score=270.17 Aligned_cols=436 Identities=19% Similarity=0.282 Sum_probs=232.7
Q ss_pred HHhhcCCCCcEEeecCCCCCC-------------HHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecC
Q 003270 205 QAVLNCPLLHLLDIASCHKLS-------------DAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 271 (835)
Q Consensus 205 ~~~~~~~~L~~L~l~~~~~l~-------------~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 271 (835)
..+..+++|++|++++|..+. ...+......+++|++|++++|. +++..+..+...+++|++|+++
T Consensus 60 ~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~ 138 (594)
T 2p1m_B 60 TVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLS 138 (594)
T ss_dssp HHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEE
T ss_pred HHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCC
Confidence 344556666666666654222 12344555677888888888887 7777777776566666666666
Q ss_pred CCCCCCccccCCCCCcEEecCCCCCCChhhHHHhh-hccCccEEEccCCCccccccccCcccceeeccccccccchhhcc
Q 003270 272 YCPNISLESVRLPMLTVLQLHSCEGITSASMAAIS-HSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRA 350 (835)
Q Consensus 272 ~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~ 350 (835)
+| ..+.+.....+. .+++|++|++++|.+.+..+..++.
T Consensus 139 ~~---------------------~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~------------------- 178 (594)
T 2p1m_B 139 SC---------------------EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSH------------------- 178 (594)
T ss_dssp SC---------------------EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGG-------------------
T ss_pred Cc---------------------CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHH-------------------
Confidence 55 344444444443 6788888888887643322211111
Q ss_pred cccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecC
Q 003270 351 MMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 430 (835)
Q Consensus 351 ~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 430 (835)
....+++|++|+++++. .. .....+..+...+++|++|++++|..+++ .+..+ ..+++|++|.+..
T Consensus 179 ------~~~~~~~L~~L~l~~~~-~~---~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~---~~~~~L~~L~l~~ 244 (594)
T 2p1m_B 179 ------FPDTYTSLVSLNISCLA-SE---VSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLL---QRAPQLEELGTGG 244 (594)
T ss_dssp ------SCTTCCCCCEEECTTCC-SC---CCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHH---HHCTTCSEEECSB
T ss_pred ------HhhcCCcCcEEEecccC-Cc---CCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHH---hcCCcceEccccc
Confidence 12356677777777665 11 12234455555678888888888755555 44444 5667777777765
Q ss_pred CCC-CccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCccc-ccccceeE
Q 003270 431 CEG-LTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTL-GIEALHMV 508 (835)
Q Consensus 431 ~~~-l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l-~l~~~~l~ 508 (835)
+.. +..- .+. .++. .+.+|++|+.+ .+....
T Consensus 245 ~~~~~~~~----------------~~~------------------------~l~~-----~l~~~~~L~~Ls~~~~~~-- 277 (594)
T 2p1m_B 245 YTAEVRPD----------------VYS------------------------GLSV-----ALSGCKELRCLSGFWDAV-- 277 (594)
T ss_dssp CCCCCCHH----------------HHH------------------------HHHH-----HHHTCTTCCEEECCBTCC--
T ss_pred ccCccchh----------------hHH------------------------HHHH-----HHhcCCCcccccCCcccc--
Confidence 531 0000 000 0000 02333333333 111110
Q ss_pred EEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCcc
Q 003270 509 VLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTF 588 (835)
Q Consensus 509 ~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~ 588 (835)
...++..+..+++|++|++++|. +++..+...+..+++|++|++++| ..+.+.
T Consensus 278 ------~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l------------------ 330 (594)
T 2p1m_B 278 ------PAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IEDAGL------------------ 330 (594)
T ss_dssp ------GGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHHHHH------------------
T ss_pred ------hhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCHHHH------------------
Confidence 02233333345555555555553 444444444445555555555554 222222
Q ss_pred ccCchHHHhccccccEEec--------ccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEc
Q 003270 589 LTNLEPVFESCLQLKVLKL--------QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL 660 (835)
Q Consensus 589 ~~~l~~~~~~~~~L~~L~l--------~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l 660 (835)
+.....+++|++|++ .+|..+++.....+. ..+++|+.|+++.+.+++..+......+++|++|++
T Consensus 331 ----~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~--~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L 404 (594)
T 2p1m_B 331 ----EVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVS--MGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRL 404 (594)
T ss_dssp ----HHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHH--HHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEE
T ss_pred ----HHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHH--HhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEe
Confidence 222333455555555 223335555444432 235666666666666666444444445667777776
Q ss_pred c-----CCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCc-ccccCccce
Q 003270 661 N-----GCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPP-QARCFHLSS 734 (835)
Q Consensus 661 ~-----~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~-~~~~~~L~~ 734 (835)
. +|..+.+.+.. ..++. +..+++|+.
T Consensus 405 ~~~~~~~~~~l~~~~~~------------------------------------------------~~~~~l~~~~~~L~~ 436 (594)
T 2p1m_B 405 CIIEPKAPDYLTLEPLD------------------------------------------------IGFGAIVEHCKDLRR 436 (594)
T ss_dssp EESSTTCCCTTTCCCTH------------------------------------------------HHHHHHHHHCTTCCE
T ss_pred ecccCCCcccccCCchh------------------------------------------------hHHHHHHhhCCCccE
Confidence 6 33333211100 00000 223344555
Q ss_pred EeccCCCCcccc-----ccccccccEEecccccc----hhhhhhcCCccceeecccCcCChhHHHHHHhcCCCcceeecc
Q 003270 735 LNLSLSANLKEV-----DVACFNLCFLNLSNCCS----LETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVR 805 (835)
Q Consensus 735 L~l~~~~~l~~~-----~~~~~~L~~L~l~~c~~----l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~ 805 (835)
|++++ .+++. ...+++|+.|++++|.. +..+...||+|++|+|++|++++.+++.....+++|++|+++
T Consensus 437 L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~ 514 (594)
T 2p1m_B 437 LSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMS 514 (594)
T ss_dssp EECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEE
T ss_pred EeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeee
Confidence 55543 22221 11255666666666642 233334688888888888888877777767778888888888
Q ss_pred cccCCCchHHHHHHHhCCcch
Q 003270 806 FCPKICSTSMGRLRAACPSLK 826 (835)
Q Consensus 806 ~c~~l~~~~~~~~~~~~p~l~ 826 (835)
+|+. ...++..+++.+|.++
T Consensus 515 ~~~~-~~~~~~~l~~~lp~l~ 534 (594)
T 2p1m_B 515 SCSV-SFGACKLLGQKMPKLN 534 (594)
T ss_dssp SSCC-BHHHHHHHHHHCTTEE
T ss_pred CCCC-CHHHHHHHHHhCCCCE
Confidence 8875 6677777777788874
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-27 Score=264.55 Aligned_cols=134 Identities=18% Similarity=0.144 Sum_probs=74.5
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++|+.+++++|.+. +..|..+..+++|++|++++| .+.+ ..+..+..+++|++|++++|... ...+..+.
T Consensus 275 ~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~ 344 (455)
T 3v47_A 275 SGVKTCDLSKSKIF-------ALLKSVFSHFTDLEQLTLAQN-EINK-IDDNAFWGLTHLLKLNLSQNFLG-SIDSRMFE 344 (455)
T ss_dssp SCCCEEECCSSCCC-------EECTTTTTTCTTCCEEECTTS-CCCE-ECTTTTTTCTTCCEEECCSSCCC-EECGGGGT
T ss_pred cCceEEEecCcccc-------ccchhhcccCCCCCEEECCCC-cccc-cChhHhcCcccCCEEECCCCccC-CcChhHhc
Confidence 45555555555553 344555666666666666666 3432 22334555666666666666532 22244556
Q ss_pred hccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 575 SLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
.+++|++|++++|.++++ |..+..+++|++|++++|+ +++..... +..+++|+.|++++|+++.
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~l~~ 409 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGI---FDRLTSLQKIWLHTNPWDC 409 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSSCBCC
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCc-cccCCHhH---hccCCcccEEEccCCCccc
Confidence 666666666666666654 3455666666666666665 55443332 2455666666666665544
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-28 Score=266.40 Aligned_cols=264 Identities=15% Similarity=0.107 Sum_probs=128.0
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCC-------------CEEEecCCCCCcccc
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSML-------------KSLNVNDATLGNGVQ 164 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L-------------~~L~l~~~~~~~~~~ 164 (835)
.+++++++++ +.+ +.+|++++++++|++|++++|.+.+.+|..++.+++| ++|++++|.+++ +|
T Consensus 11 ~~L~~L~l~~-n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp 87 (454)
T 1jl5_A 11 TFLQEPLRHS-SNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LP 87 (454)
T ss_dssp -------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CC
T ss_pred ccchhhhccc-Cch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CC
Confidence 4677777777 455 5577777888888888888887777777777776654 777777776643 33
Q ss_pred cccccCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeC
Q 003270 165 EIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDM 244 (835)
Q Consensus 165 ~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L 244 (835)
.. .++|++|++++|.+..+...+++|++|++++|.+...-...++|++|++++| .++. +| .++++++|++|++
T Consensus 88 ~~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n-~l~~--lp-~~~~l~~L~~L~l 160 (454)
T 1jl5_A 88 EL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN-QLEK--LP-ELQNSSFLKIIDV 160 (454)
T ss_dssp SC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSS-CCSS--CC-CCTTCTTCCEEEC
T ss_pred CC---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCcccCCCCCCCEEECcCC-CCCC--Cc-ccCCCCCCCEEEC
Confidence 32 2566777777776666555556666666666655421111245666666665 3441 33 3555566666666
Q ss_pred CCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcccc
Q 003270 245 SNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTS 324 (835)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 324 (835)
++|. +++ .+. ...+|++|++++|. +.+. ..++.+++|++|++++|.+.+
T Consensus 161 ~~N~-l~~-lp~----~~~~L~~L~L~~n~----------------------l~~l--~~~~~l~~L~~L~l~~N~l~~- 209 (454)
T 1jl5_A 161 DNNS-LKK-LPD----LPPSLEFIAAGNNQ----------------------LEEL--PELQNLPFLTAIYADNNSLKK- 209 (454)
T ss_dssp CSSC-CSC-CCC----CCTTCCEEECCSSC----------------------CSSC--CCCTTCTTCCEEECCSSCCSS-
T ss_pred CCCc-Ccc-cCC----CcccccEEECcCCc----------------------CCcC--ccccCCCCCCEEECCCCcCCc-
Confidence 6655 432 110 22344555554443 3331 134455555555555554332
Q ss_pred ccccCcccceeeccccccccchhhccccccee-eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCC
Q 003270 325 VSLELPRLQNIRLVHCRKFADLNLRAMMLSSI-MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDC 403 (835)
Q Consensus 325 ~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c 403 (835)
+|...++|+.|++.++ .++.+ .+..+++|++|++++|.+++... ..++|++|++++
T Consensus 210 l~~~~~~L~~L~l~~n-----------~l~~lp~~~~l~~L~~L~l~~N~l~~l~~-----------~~~~L~~L~l~~- 266 (454)
T 1jl5_A 210 LPDLPLSLESIVAGNN-----------ILEELPELQNLPFLTTIYADNNLLKTLPD-----------LPPSLEALNVRD- 266 (454)
T ss_dssp CCCCCTTCCEEECCSS-----------CCSSCCCCTTCTTCCEEECCSSCCSSCCS-----------CCTTCCEEECCS-
T ss_pred CCCCcCcccEEECcCC-----------cCCcccccCCCCCCCEEECCCCcCCcccc-----------cccccCEEECCC-
Confidence 2222233333333222 11111 24556667777777766655310 125677777777
Q ss_pred cCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 404 ESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 404 ~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+.+++. | ..+++|++|++++|.
T Consensus 267 N~l~~l-~------~~~~~L~~L~ls~N~ 288 (454)
T 1jl5_A 267 NYLTDL-P------ELPQSLTFLDVSENI 288 (454)
T ss_dssp SCCSCC-C------CCCTTCCEEECCSSC
T ss_pred Cccccc-C------cccCcCCEEECcCCc
Confidence 355542 1 123566777776664
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=257.30 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=32.3
Q ss_pred CCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccC
Q 003270 462 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 536 (835)
Q Consensus 462 ~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~ 536 (835)
+++|+.+++++|..++..+.-...++.+++.++++|+.+++++|+++ + ++ +..+++|+.|++++|
T Consensus 285 l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~-------~-l~--l~~l~~L~~L~l~~N 349 (457)
T 3bz5_A 285 CRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELT-------E-LD--VSHNTKLKSLSCVNA 349 (457)
T ss_dssp CTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCS-------C-CC--CTTCTTCSEEECCSS
T ss_pred cccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccc-------c-cc--cccCCcCcEEECCCC
Confidence 34444444444444333222223344445555566666666666653 2 22 455566666666665
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=3e-27 Score=262.29 Aligned_cols=361 Identities=16% Similarity=0.130 Sum_probs=185.9
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhh-HHhhcCCCCCCEEEecCCCCCcccccccccCCcccEE
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAF-FHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 176 (835)
+++++|++++ +.+.+..+..|..+++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..|..+.++++|++|
T Consensus 30 ~~l~~L~Ls~-n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSL-NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCS-SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecC-CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 3455555555 3444444445555555555555555554332 3345555555555555555544444444444444444
Q ss_pred eccCccccccccCCCCCcEEEecccchH--HHhhcCCCCcEEeecCCCCCCHHHHHH-HHhcCCCCCEEeCCCCCCCChH
Q 003270 177 EITKCRVMRVSIRCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRL-AATSCPQLESLDMSNCSCVSDE 253 (835)
Q Consensus 177 ~l~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~-~~~~~~~L~~L~L~~~~~l~~~ 253 (835)
++++|.+... +. ..+..+++|++|++++|. ++.. .+. .+.++++|++|++++|. +++.
T Consensus 109 ~L~~n~l~~~----------------~~~~~~~~~l~~L~~L~L~~n~-l~~~-~~~~~~~~l~~L~~L~L~~n~-l~~~ 169 (455)
T 3v47_A 109 TLTQCNLDGA----------------VLSGNFFKPLTSLEMLVLRDNN-IKKI-QPASFFLNMRRFHVLDLTFNK-VKSI 169 (455)
T ss_dssp ECTTSCCBTH----------------HHHSSTTTTCTTCCEEECCSSB-CCSC-CCCGGGGGCTTCCEEECTTCC-BSCC
T ss_pred eCCCCCCCcc----------------ccCcccccCcccCCEEECCCCc-cCcc-CcccccCCCCcccEEeCCCCc-cccc
Confidence 4444443210 00 114556666666666653 3311 122 25666667777776666 4433
Q ss_pred HHHHHHH-hCCCCcEEecCCCC--CCCc---------cccCCCCCcEEecCCCCCCChhhHHHhhhc---cCccEEEccC
Q 003270 254 SLREIAL-SCANLRILNSSYCP--NISL---------ESVRLPMLTVLQLHSCEGITSASMAAISHS---YMLEVLELDN 318 (835)
Q Consensus 254 ~~~~~~~-~~~~L~~L~l~~~~--~l~~---------~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~ 318 (835)
.+..+.. ...+|+.|+++++. .++. .+..+++|++|++++| .+.+..+..+... .+|+.|++++
T Consensus 170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n-~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN-GFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS-CCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred ChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCC-cccccchhhhhccccccceeeEeecc
Confidence 3332220 12456666666664 1111 1224566777777775 6666666665543 6677777766
Q ss_pred CCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEE
Q 003270 319 CNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEV 398 (835)
Q Consensus 319 ~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L 398 (835)
|...+.... . +.+.+........+ ..++|++|
T Consensus 249 ~~~~~~~~~----------------------~---------------------~~~~~~~~~~~~~~-----~~~~L~~L 280 (455)
T 3v47_A 249 SYNMGSSFG----------------------H---------------------TNFKDPDNFTFKGL-----EASGVKTC 280 (455)
T ss_dssp CTTTSCCTT----------------------C---------------------CSSCCCCTTTTGGG-----TTSCCCEE
T ss_pred ccccccccc----------------------h---------------------hhhccCcccccccc-----cccCceEE
Confidence 653322100 0 00000000000011 23567777
Q ss_pred ecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccc
Q 003270 399 DLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIES 478 (835)
Q Consensus 399 ~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~ 478 (835)
++++ +.+++..+..+ ..+++|++|++++|. ++
T Consensus 281 ~l~~-n~l~~~~~~~~---~~l~~L~~L~Ls~n~-l~------------------------------------------- 312 (455)
T 3v47_A 281 DLSK-SKIFALLKSVF---SHFTDLEQLTLAQNE-IN------------------------------------------- 312 (455)
T ss_dssp ECCS-SCCCEECTTTT---TTCTTCCEEECTTSC-CC-------------------------------------------
T ss_pred EecC-ccccccchhhc---ccCCCCCEEECCCCc-cc-------------------------------------------
Confidence 7777 46665555444 455666666665554 21
Q ss_pred cccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEe
Q 003270 479 ASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLI 558 (835)
Q Consensus 479 ~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~ 558 (835)
+..|..+..+++|++|++++| .++ +..+..+..+++|++|+
T Consensus 313 -------------------------------------~~~~~~~~~l~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~ 353 (455)
T 3v47_A 313 -------------------------------------KIDDNAFWGLTHLLKLNLSQN-FLG-SIDSRMFENLDKLEVLD 353 (455)
T ss_dssp -------------------------------------EECTTTTTTCTTCCEEECCSS-CCC-EECGGGGTTCTTCCEEE
T ss_pred -------------------------------------ccChhHhcCcccCCEEECCCC-ccC-CcChhHhcCcccCCEEE
Confidence 112233444555555555555 332 22234455566666666
Q ss_pred ccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchh
Q 003270 559 LMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNT 616 (835)
Q Consensus 559 l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~ 616 (835)
+++|... ...+..+..+++|++|++++|+++++|. .+..+++|++|++++|+ +++.
T Consensus 354 Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~ 410 (455)
T 3v47_A 354 LSYNHIR-ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP-WDCS 410 (455)
T ss_dssp CCSSCCC-EECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-BCCC
T ss_pred CCCCccc-ccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCC-cccC
Confidence 6666533 2235567777888888888888877665 56778888888888887 5543
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.94 E-value=2.3e-26 Score=255.71 Aligned_cols=207 Identities=18% Similarity=0.315 Sum_probs=134.1
Q ss_pred CCCcEEEecccchH-----HHhhcCCCCcEEeecCCCCCCHH---HHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhC
Q 003270 191 PQLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDA---AIRLAATSCPQLESLDMSNCSCVSDESLREIALSC 262 (835)
Q Consensus 191 ~~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~---~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~ 262 (835)
++|++|+++++.+. ..+..+++|++|++++| .+++. .++..+..+++|++|++++|. +++..+..+...+
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l 80 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGL 80 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTT
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCC-CCCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHH
Confidence 34555666665543 34677888999999888 46654 456677888899999999888 8877777777666
Q ss_pred C----CCcEEecCCCCC-------CCccccCCCCCcEEecCCCCCCChhhHHHhhh-----ccCccEEEccCCCcccccc
Q 003270 263 A----NLRILNSSYCPN-------ISLESVRLPMLTVLQLHSCEGITSASMAAISH-----SYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 263 ~----~L~~L~l~~~~~-------l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~ 326 (835)
+ +|++|++++|.- ++..+..+++|++|++++| .+.+..+..+.. .++|++|++++|.+.+..+
T Consensus 81 ~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 159 (461)
T 1z7x_W 81 QTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC 159 (461)
T ss_dssp CSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred hhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence 6 688888888862 2445667888888888887 577666665554 3568888888886544321
Q ss_pred ccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhH-HHHhhCCcccEEecCCCcC
Q 003270 327 LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLT-SLALQCQCLQEVDLTDCES 405 (835)
Q Consensus 327 ~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~l~~~~~~L~~L~l~~c~~ 405 (835)
..++. .+..+++|++|++++|.+++..+. .+. .+....++|++|++++| .
T Consensus 160 ~~l~~-------------------------~l~~~~~L~~L~L~~n~i~~~~~~---~l~~~l~~~~~~L~~L~L~~n-~ 210 (461)
T 1z7x_W 160 EPLAS-------------------------VLRAKPDFKELTVSNNDINEAGVR---VLCQGLKDSPCQLEALKLESC-G 210 (461)
T ss_dssp HHHHH-------------------------HHHHCTTCCEEECCSSBCHHHHHH---HHHHHHHHSCCCCCEEECTTS-C
T ss_pred HHHHH-------------------------HHhhCCCCCEEECcCCCcchHHHH---HHHHHHhcCCCCceEEEccCC-C
Confidence 11110 245566777777777776553221 111 11113457777777774 6
Q ss_pred Cchhh----hhhccCCCCCCCccEEEecCCC
Q 003270 406 LTNSV----CEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 406 l~~~~----~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+++.. +..+ ..+++|++|++++|.
T Consensus 211 l~~~~~~~l~~~l---~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 211 VTSDNCRDLCGIV---ASKASLRELALGSNK 238 (461)
T ss_dssp CBTTHHHHHHHHH---HHCTTCCEEECCSSB
T ss_pred CcHHHHHHHHHHH---HhCCCccEEeccCCc
Confidence 66643 3333 456777777777764
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=249.07 Aligned_cols=107 Identities=17% Similarity=0.180 Sum_probs=67.3
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~ 601 (835)
+..+++|++|++++| .+.+ ++. +..+++|+.|++++|...+.. .+..+++|++|++++|.+++++ .+..+++
T Consensus 283 ~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L~~n~l~~~~---~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~ 354 (466)
T 1o6v_A 283 LAGLTALTNLELNEN-QLED--ISP-ISNLKNLTYLTLYFNNISDIS---PVSSLTKLQRLFFYNNKVSDVS-SLANLTN 354 (466)
T ss_dssp GTTCTTCSEEECCSS-CCSC--CGG-GGGCTTCSEEECCSSCCSCCG---GGGGCTTCCEEECCSSCCCCCG-GGTTCTT
T ss_pred ccCCCccCeEEcCCC-cccC--chh-hcCCCCCCEEECcCCcCCCch---hhccCccCCEeECCCCccCCch-hhccCCC
Confidence 444556666666665 3432 222 456666666666666544332 2566777777777777777663 5667777
Q ss_pred ccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 602 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 602 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
|+.|++++|+ +++..+ + ..+++|+.|++++|++++
T Consensus 355 L~~L~l~~n~-l~~~~~--~---~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 355 INWLSAGHNQ-ISDLTP--L---ANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSC-CCBCGG--G---TTCTTCCEEECCCEEEEC
T ss_pred CCEEeCCCCc-cCccch--h---hcCCCCCEEeccCCcccC
Confidence 7777777776 665544 2 567777777777777765
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.7e-26 Score=250.85 Aligned_cols=148 Identities=22% Similarity=0.256 Sum_probs=121.1
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.+. .++. +..+++|++|++++| .+.+ ++. +..+++|+.|++++|...+.
T Consensus 239 l~~l~~L~~L~l~~n~l~--------~~~~-~~~l~~L~~L~l~~n-~l~~--~~~-~~~l~~L~~L~L~~n~l~~~--- 302 (466)
T 1o6v_A 239 LASLTNLTDLDLANNQIS--------NLAP-LSGLTKLTELKLGAN-QISN--ISP-LAGLTALTNLELNENQLEDI--- 302 (466)
T ss_dssp GGGCTTCSEEECCSSCCC--------CCGG-GTTCTTCSEEECCSS-CCCC--CGG-GTTCTTCSEEECCSSCCSCC---
T ss_pred hhcCCCCCEEECCCCccc--------cchh-hhcCCCCCEEECCCC-ccCc--ccc-ccCCCccCeEEcCCCcccCc---
Confidence 455677777777777663 2232 778899999999998 4554 333 78899999999999986653
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++|++|++++|.++++++ +..+++|++|++++|+ +++.. .+..+++|+.|++++|++++ ..+ +.
T Consensus 303 ~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~-l~~~~-----~l~~l~~L~~L~l~~n~l~~-~~~--~~ 372 (466)
T 1o6v_A 303 SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK-VSDVS-----SLANLTNINWLSAGHNQISD-LTP--LA 372 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG-----GGTTCTTCCEEECCSSCCCB-CGG--GT
T ss_pred hhhcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc-cCCch-----hhccCCCCCEEeCCCCccCc-cch--hh
Confidence 248899999999999999998766 7899999999999998 87762 34789999999999999987 344 88
Q ss_pred hCCCccEEEccCCC
Q 003270 651 YCTHLTHVSLNGCG 664 (835)
Q Consensus 651 ~~~~L~~L~l~~~~ 664 (835)
.+++|++|++++|+
T Consensus 373 ~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 373 NLTRITQLGLNDQA 386 (466)
T ss_dssp TCTTCCEEECCCEE
T ss_pred cCCCCCEEeccCCc
Confidence 99999999999986
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.94 E-value=1.3e-25 Score=249.61 Aligned_cols=158 Identities=19% Similarity=0.269 Sum_probs=87.5
Q ss_pred CCeeEEEccCCcchhhH-HHHHHhhCCcCcEEEcCCcccChh----hHHhhcCCCCCCEEEecCCCCCcccc-cccccCC
Q 003270 98 PNATEVNIYGAPAIHLL-VMKAVSLLRNLEALTLGRGQLGDA----FFHALADCSMLKSLNVNDATLGNGVQ-EIPINHD 171 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~i~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~l~ 171 (835)
+++++|+++++ .+.+. ....+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+ .....+.
T Consensus 3 ~~l~~L~Ls~~-~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 3 LDIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp EEEEEEEEESC-CCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred ccceehhhhhc-ccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 46778888774 44443 333477788888888888887753 46667777888888888887765322 2333344
Q ss_pred ----cccEEeccCcccccc--------ccCCCCCcEEEecccchHH----H-----hhcCCCCcEEeecCCCCCCHH---
Q 003270 172 ----QLRRLEITKCRVMRV--------SIRCPQLEHLSLKRSNMAQ----A-----VLNCPLLHLLDIASCHKLSDA--- 227 (835)
Q Consensus 172 ----~L~~L~l~~~~~~~~--------~~~l~~L~~L~l~~~~i~~----~-----~~~~~~L~~L~l~~~~~l~~~--- 227 (835)
+|++|++++|.+... ...+++|++|++++|.+.. . ....++|++|++++| .+++.
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~ 160 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCE 160 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCC-CCCHHHHH
Confidence 577777777666531 1234445555554444431 1 112334555555555 33322
Q ss_pred HHHHHHhcCCCCCEEeCCCCCCCChHHHHHH
Q 003270 228 AIRLAATSCPQLESLDMSNCSCVSDESLREI 258 (835)
Q Consensus 228 ~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 258 (835)
.++..+..+++|++|++++|. +++..+..+
T Consensus 161 ~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l 190 (461)
T 1z7x_W 161 PLASVLRAKPDFKELTVSNND-INEAGVRVL 190 (461)
T ss_dssp HHHHHHHHCTTCCEEECCSSB-CHHHHHHHH
T ss_pred HHHHHHhhCCCCCEEECcCCC-cchHHHHHH
Confidence 233444455555555555555 444444433
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=246.86 Aligned_cols=397 Identities=15% Similarity=0.102 Sum_probs=220.8
Q ss_pred eeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCc-------------CcEEEcCCcccChhhHHhh
Q 003270 77 CLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRN-------------LEALTLGRGQLGDAFFHAL 143 (835)
Q Consensus 77 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~-------------L~~L~l~~~~i~~~~~~~l 143 (835)
.+.++.... ..++..+..++++++|++++ +.+.+.+|.+++.+++ +++|++++|.+++ +|.
T Consensus 15 ~L~l~~n~l--~~iP~~i~~L~~L~~L~l~~-n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~-- 88 (454)
T 1jl5_A 15 EPLRHSSNL--TEMPVEAENVKSKTEYYNAW-SEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE-- 88 (454)
T ss_dssp ---------------------CCHHHHHHHH-HHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS--
T ss_pred hhhcccCch--hhCChhHhcccchhhhhccC-CcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC--
Confidence 344444443 35666678889999999999 5676666666666665 5999999999886 232
Q ss_pred cCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccchH--HHhhcCCCCcEEeecCC
Q 003270 144 ADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMA--QAVLNCPLLHLLDIASC 221 (835)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~--~~~~~~~~L~~L~l~~~ 221 (835)
..++|++|++++|.+++ +|.. +++|++|++++|.+..+....++|++|++++|.+. ..++.+++|++|++++|
T Consensus 89 -~~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 89 -LPPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNN 163 (454)
T ss_dssp -CCTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSS
T ss_pred -CcCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCCCcccCCCCCCCEEECCCC
Confidence 24789999999999976 6653 48999999999999887755689999999999876 35788999999999998
Q ss_pred CCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCCh
Q 003270 222 HKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITS 299 (835)
Q Consensus 222 ~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~ 299 (835)
.++. +|. ...+|++|++++|. +++. + .+. .+++|+.|++++|. .+|. ..++|++|++++| .+..
T Consensus 164 -~l~~--lp~---~~~~L~~L~L~~n~-l~~l-~-~~~-~l~~L~~L~l~~N~l~~l~~---~~~~L~~L~l~~n-~l~~ 229 (454)
T 1jl5_A 164 -SLKK--LPD---LPPSLEFIAAGNNQ-LEEL-P-ELQ-NLPFLTAIYADNNSLKKLPD---LPLSLESIVAGNN-ILEE 229 (454)
T ss_dssp -CCSC--CCC---CCTTCCEEECCSSC-CSSC-C-CCT-TCTTCCEEECCSSCCSSCCC---CCTTCCEEECCSS-CCSS
T ss_pred -cCcc--cCC---CcccccEEECcCCc-CCcC-c-ccc-CCCCCCEEECCCCcCCcCCC---CcCcccEEECcCC-cCCc
Confidence 4652 332 34699999999998 6652 2 444 89999999999986 3333 2368999999997 6653
Q ss_pred hhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchh
Q 003270 300 ASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSL 379 (835)
Q Consensus 300 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~ 379 (835)
.+ .++.+++|++|++++|.+.+ +|...++++.|++. +|.++++. ...++|+.+++++|.+++...
T Consensus 230 -lp-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~-----------~N~l~~l~-~~~~~L~~L~ls~N~l~~l~~ 294 (454)
T 1jl5_A 230 -LP-ELQNLPFLTTIYADNNLLKT-LPDLPPSLEALNVR-----------DNYLTDLP-ELPQSLTFLDVSENIFSGLSE 294 (454)
T ss_dssp -CC-CCTTCTTCCEEECCSSCCSS-CCSCCTTCCEEECC-----------SSCCSCCC-CCCTTCCEEECCSSCCSEESC
T ss_pred -cc-ccCCCCCCCEEECCCCcCCc-ccccccccCEEECC-----------CCcccccC-cccCcCCEEECcCCccCcccC
Confidence 33 47888999999999987654 44444444444443 33333321 123667777777777765310
Q ss_pred hcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCccccccc
Q 003270 380 QKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALE 459 (835)
Q Consensus 380 ~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~ 459 (835)
..++|++|++++ +.+++.. ...++|++|+++++. ++.++
T Consensus 295 -----------~~~~L~~L~l~~-N~l~~i~-------~~~~~L~~L~Ls~N~-l~~lp--------------------- 333 (454)
T 1jl5_A 295 -----------LPPNLYYLNASS-NEIRSLC-------DLPPSLEELNVSNNK-LIELP--------------------- 333 (454)
T ss_dssp -----------CCTTCCEEECCS-SCCSEEC-------CCCTTCCEEECCSSC-CSCCC---------------------
T ss_pred -----------cCCcCCEEECcC-CcCCccc-------CCcCcCCEEECCCCc-ccccc---------------------
Confidence 114677777777 4665421 112467777776654 43322
Q ss_pred ccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCc--ccccccccCCCcceEecccCC
Q 003270 460 LKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCG--VLSDAYINCPLLTSLDASFCS 537 (835)
Q Consensus 460 ~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~--~l~~~~~~~~~L~~L~ls~~~ 537 (835)
..+++|+.+++++|. +.. +|. .+++|+.+++++|+++ + .+|..+. .|. .|.
T Consensus 334 ~~~~~L~~L~L~~N~-l~~---lp~--------~l~~L~~L~L~~N~l~-------~l~~ip~~l~------~L~--~n~ 386 (454)
T 1jl5_A 334 ALPPRLERLIASFNH-LAE---VPE--------LPQNLKQLHVEYNPLR-------EFPDIPESVE------DLR--MNS 386 (454)
T ss_dssp CCCTTCCEEECCSSC-CSC---CCC--------CCTTCCEEECCSSCCS-------SCCCCCTTCC------EEE--CCC
T ss_pred ccCCcCCEEECCCCc-ccc---ccc--------hhhhccEEECCCCCCC-------cCCCChHHHH------hhh--hcc
Confidence 223556666665542 221 221 2356666666666653 2 3343322 221 121
Q ss_pred CCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC
Q 003270 538 QLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN 591 (835)
Q Consensus 538 ~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~ 591 (835)
.. +.++. .+++|+.|++++|+..+. ..+ -++++.|.+.+|.+.+
T Consensus 387 -~~-~~i~~---~~~~L~~L~ls~N~l~~~---~~i--P~sl~~L~~~~~~~~~ 430 (454)
T 1jl5_A 387 -HL-AEVPE---LPQNLKQLHVETNPLREF---PDI--PESVEDLRMNSERVVD 430 (454)
T ss_dssp ------------------------------------------------------
T ss_pred -cc-ccccc---ccCcCCEEECCCCcCCcc---ccc--hhhHhheeCcCcccCC
Confidence 11 11222 247788888888875541 011 1457777788877664
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.1e-25 Score=240.67 Aligned_cols=323 Identities=19% Similarity=0.224 Sum_probs=180.3
Q ss_pred CCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEE
Q 003270 97 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 97 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 176 (835)
++++++|++++ +.+.+. + ++..+++|++|++++|.+++. + ++.+++|++|++++|.+++. + +..+++|++|
T Consensus 41 l~~L~~L~Ls~-n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L 111 (457)
T 3bz5_A 41 LATLTSLDCHN-SSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYL 111 (457)
T ss_dssp HTTCCEEECCS-SCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEE
T ss_pred cCCCCEEEccC-CCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEE
Confidence 45677777777 345543 2 567777777777777777763 2 66777777777777776652 2 5666777777
Q ss_pred eccCccccccc-cCCCCCcEEEecccchHH-HhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHH
Q 003270 177 EITKCRVMRVS-IRCPQLEHLSLKRSNMAQ-AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254 (835)
Q Consensus 177 ~l~~~~~~~~~-~~l~~L~~L~l~~~~i~~-~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~ 254 (835)
++++|.+..+. ..+++|++|++++|.+.. .++.+++|++|++++|..+... .+..+++|++|++++|. +++
T Consensus 112 ~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~ls~n~-l~~-- 184 (457)
T 3bz5_A 112 NCDTNKLTKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL----DVTPQTQLTTLDCSFNK-ITE-- 184 (457)
T ss_dssp ECCSSCCSCCCCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC----CCTTCTTCCEEECCSSC-CCC--
T ss_pred ECCCCcCCeecCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc----ccccCCcCCEEECCCCc-cce--
Confidence 77776665432 244555555555554431 2344444555555444322211 13344444444444444 332
Q ss_pred HHHHHHhCCCCcEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccce
Q 003270 255 LREIALSCANLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQN 334 (835)
Q Consensus 255 ~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~ 334 (835)
++ +..+++|++|++++| .+.+. .++.+++|++|++++|.+.+ +|
T Consensus 185 ---------------------l~--l~~l~~L~~L~l~~N-~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip-------- 228 (457)
T 3bz5_A 185 ---------------------LD--VSQNKLLNRLNCDTN-NITKL---DLNQNIQLTFLDCSSNKLTE-ID-------- 228 (457)
T ss_dssp ---------------------CC--CTTCTTCCEEECCSS-CCSCC---CCTTCTTCSEEECCSSCCSC-CC--------
T ss_pred ---------------------ec--cccCCCCCEEECcCC-cCCee---ccccCCCCCEEECcCCcccc-cC--------
Confidence 22 444555555555554 34433 24555666666666665433 22
Q ss_pred eeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhc
Q 003270 335 IRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVF 414 (835)
Q Consensus 335 L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~ 414 (835)
+..+++++.+++++|.++++.+..+++|+.++++. .+|+.|++++| ...+..|
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~---------------------n~L~~L~l~~n-~~~~~~~--- 281 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ---------------------TDLLEIDLTHN-TQLIYFQ--- 281 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT---------------------CCCSCCCCTTC-TTCCEEE---
T ss_pred --ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC---------------------CCCCEEECCCC-ccCCccc---
Confidence 12233333334444444444445555566555533 35666777774 3333322
Q ss_pred cCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcC
Q 003270 415 SDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGIC 494 (835)
Q Consensus 415 ~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~ 494 (835)
...+++|+.|++++|..+..++.....++.+.++++ ++|+.++++++. ++.+.+.+|
T Consensus 282 --~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~----------~~L~~L~L~~N~-----------l~~l~l~~l 338 (457)
T 3bz5_A 282 --AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQN----------PKLVYLYLNNTE-----------LTELDVSHN 338 (457)
T ss_dssp --CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTC----------TTCCEEECTTCC-----------CSCCCCTTC
T ss_pred --ccccccCCEEECCCCcccceeccCCCcceEechhhc----------ccCCEEECCCCc-----------ccccccccC
Confidence 156777888888887766666554444544444443 556666666542 222347888
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccC
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFC 536 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~ 536 (835)
++|+.+++++|+++ + ++.|..|++++|
T Consensus 339 ~~L~~L~l~~N~l~-------~--------l~~L~~L~l~~n 365 (457)
T 3bz5_A 339 TKLKSLSCVNAHIQ-------D--------FSSVGKIPALNN 365 (457)
T ss_dssp TTCSEEECCSSCCC-------B--------CTTGGGSSGGGT
T ss_pred CcCcEEECCCCCCC-------C--------ccccccccccCC
Confidence 99999999999874 1 356777777776
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=224.25 Aligned_cols=84 Identities=24% Similarity=0.340 Sum_probs=38.3
Q ss_pred hhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhC
Q 003270 573 LRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYC 652 (835)
Q Consensus 573 ~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~ 652 (835)
+..+++|++|++++|.+++++ .+..+++|++|++++|+ +++..+..+ ..+++|+.|++++|++++ ..+ +..+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~l---~~l~~L~~L~L~~n~l~~-~~~--~~~l 332 (347)
T 4fmz_A 261 VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQ-LGNEDMEVI---GGLTNLTTLFLSQNHITD-IRP--LASL 332 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCGGGHHHH---HTCTTCSEEECCSSSCCC-CGG--GGGC
T ss_pred HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCc-CCCcChhHh---hccccCCEEEccCCcccc-ccC--hhhh
Confidence 444444444455444444442 24444555555555544 444443333 334455555555554443 112 4445
Q ss_pred CCccEEEccCCC
Q 003270 653 THLTHVSLNGCG 664 (835)
Q Consensus 653 ~~L~~L~l~~~~ 664 (835)
++|++|++++|+
T Consensus 333 ~~L~~L~l~~N~ 344 (347)
T 4fmz_A 333 SKMDSADFANQV 344 (347)
T ss_dssp TTCSEESSSCC-
T ss_pred hccceeehhhhc
Confidence 555555555443
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=232.40 Aligned_cols=122 Identities=19% Similarity=0.210 Sum_probs=76.9
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~ 601 (835)
+..+++|++|++++| .+.+ ..+..+..+++|++|++++|..... +..+..+++|++|++++|++..+|..+..+++
T Consensus 244 l~~l~~L~~L~Ls~n-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~l~~ 319 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYN-ELEK-IMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 319 (390)
T ss_dssp GGGCTTCSEEECCSS-CCCE-EESGGGTTCSSCCEEECCSSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred HcCCCCccEEECCCC-cCCC-cChhHccccccCCEEECCCCcCccc--CcccCCCCCCCEEECCCCcceecCccccccCc
Confidence 344555555555555 2322 2234455555566666665554332 23345677888888888888887777777888
Q ss_pred ccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCC
Q 003270 602 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH 654 (835)
Q Consensus 602 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~ 654 (835)
|++|++++|+ +++.. +..+++|+.|++++|++........+..+..
T Consensus 320 L~~L~L~~N~-i~~~~------~~~~~~L~~L~l~~N~~~~~~~~~~~~~~~~ 365 (390)
T 3o6n_A 320 LENLYLDHNS-IVTLK------LSTHHTLKNLTLSHNDWDCNSLRALFRNVAR 365 (390)
T ss_dssp CSEEECCSSC-CCCCC------CCTTCCCSEEECCSSCEEHHHHHHHTTTCCT
T ss_pred CCEEECCCCc-cceeC------chhhccCCEEEcCCCCccchhHHHHHHHHHh
Confidence 8888888887 66552 3567888888888888877544444444443
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-23 Score=221.56 Aligned_cols=190 Identities=17% Similarity=0.215 Sum_probs=94.1
Q ss_pred ccCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCC
Q 003270 168 INHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNC 247 (835)
Q Consensus 168 ~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~ 247 (835)
..+++|++|+++++.+..+. .+..+++|++|++++| .+++ ++. +.++++|++|++++|
T Consensus 41 ~~l~~L~~L~l~~~~i~~~~------------------~~~~~~~L~~L~l~~n-~i~~--~~~-~~~l~~L~~L~L~~n 98 (347)
T 4fmz_A 41 EELESITKLVVAGEKVASIQ------------------GIEYLTNLEYLNLNGN-QITD--ISP-LSNLVKLTNLYIGTN 98 (347)
T ss_dssp HHHTTCSEEECCSSCCCCCT------------------TGGGCTTCCEEECCSS-CCCC--CGG-GTTCTTCCEEECCSS
T ss_pred hhcccccEEEEeCCccccch------------------hhhhcCCccEEEccCC-cccc--chh-hhcCCcCCEEEccCC
Confidence 34566666666666554432 2344455555555554 2331 111 445555555555555
Q ss_pred CCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccc
Q 003270 248 SCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSV 325 (835)
Q Consensus 248 ~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 325 (835)
. +++. ..+. .+++|++|++++|. .++. +..+++|++|++++|...... ..+..+++|++|++++|...+..
T Consensus 99 ~-i~~~--~~~~-~l~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~--~~~~~l~~L~~L~l~~~~~~~~~ 171 (347)
T 4fmz_A 99 K-ITDI--SALQ-NLTNLRELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDL--SPLSNMTGLNYLTVTESKVKDVT 171 (347)
T ss_dssp C-CCCC--GGGT-TCTTCSEEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC--GGGTTCTTCCEEECCSSCCCCCG
T ss_pred c-ccCc--hHHc-CCCcCCEEECcCCcccCchh-hccCCceeEEECCCCCCcccc--cchhhCCCCcEEEecCCCcCCch
Confidence 4 3321 1222 44455555555443 2222 444455555555554222221 22455555666665555432211
Q ss_pred cccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcC
Q 003270 326 SLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCES 405 (835)
Q Consensus 326 ~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~ 405 (835)
.+..+++|+++++++|.+.+... + ..+++|+.+++++ +.
T Consensus 172 -------------------------------~~~~l~~L~~L~l~~n~l~~~~~-----~----~~l~~L~~L~l~~-n~ 210 (347)
T 4fmz_A 172 -------------------------------PIANLTDLYSLSLNYNQIEDISP-----L----ASLTSLHYFTAYV-NQ 210 (347)
T ss_dssp -------------------------------GGGGCTTCSEEECTTSCCCCCGG-----G----GGCTTCCEEECCS-SC
T ss_pred -------------------------------hhccCCCCCEEEccCCccccccc-----c----cCCCccceeeccc-CC
Confidence 13455666666666666654321 1 1456778888877 46
Q ss_pred CchhhhhhccCCCCCCCccEEEecCCC
Q 003270 406 LTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 406 l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+++..+ + ..+++|++|++++|.
T Consensus 211 l~~~~~--~---~~~~~L~~L~l~~n~ 232 (347)
T 4fmz_A 211 ITDITP--V---ANMTRLNSLKIGNNK 232 (347)
T ss_dssp CCCCGG--G---GGCTTCCEEECCSSC
T ss_pred CCCCch--h---hcCCcCCEEEccCCc
Confidence 665433 2 556677777777664
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.8e-23 Score=226.30 Aligned_cols=116 Identities=19% Similarity=0.173 Sum_probs=79.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.++ +..|..+..+++|++|++++| .++. ++..+..+++|++|++++|+.... +
T Consensus 244 l~~l~~L~~L~Ls~n~l~-------~~~~~~~~~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~~n~l~~~--~ 311 (390)
T 3o6n_A 244 LLNYPGLVEVDLSYNELE-------KIMYHPFVKMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHLLHV--E 311 (390)
T ss_dssp GGGCTTCSEEECCSSCCC-------EEESGGGTTCSSCCEEECCSS-CCCE--EECSSSCCTTCCEEECCSSCCCCC--G
T ss_pred HcCCCCccEEECCCCcCC-------CcChhHccccccCCEEECCCC-cCcc--cCcccCCCCCCCEEECCCCcceec--C
Confidence 556677777777777764 444666777777888888777 4543 444456677788888877765432 4
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESL 621 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 621 (835)
..+..+++|++|++++|.++.++ +..+++|++|++++|+ ++......+
T Consensus 312 ~~~~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~-~~~~~~~~~ 359 (390)
T 3o6n_A 312 RNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHND-WDCNSLRAL 359 (390)
T ss_dssp GGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSC-EEHHHHHHH
T ss_pred ccccccCcCCEEECCCCccceeC--chhhccCCEEEcCCCC-ccchhHHHH
Confidence 55677777888888877777664 5667777788888777 666555544
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.2e-24 Score=236.28 Aligned_cols=289 Identities=18% Similarity=0.205 Sum_probs=217.3
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
++++.|++++ +.+....+..|..+++|++|++++|.+.+..|.+|.++++|++|++++|.++...+..+.++++|++|+
T Consensus 32 ~~l~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 32 TETRLLDLGK-NRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp TTCSEEECCS-SCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCcEEECCC-CccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 5789999999 577777677899999999999999999988889999999999999999998766566788899999999
Q ss_pred ccCcccccc----ccCCCCCcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCC
Q 003270 178 ITKCRVMRV----SIRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSC 249 (835)
Q Consensus 178 l~~~~~~~~----~~~l~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~ 249 (835)
+++|.+..+ ..++++|++|++++|.+. ..+..+++|++|++++| .++. ..+..+.++++|++|++++|.
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~l~~l~~L~~L~l~~n~- 187 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTS-IPTEALSHLHGLIVLRLRHLN- 187 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSS-CCHHHHTTCTTCCEEEEESCC-
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcc-cChhHhcccCCCcEEeCCCCc-
Confidence 999988654 346889999999988775 46778889999999888 4552 224567888899999998887
Q ss_pred CChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcccccc
Q 003270 250 VSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 250 l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 326 (835)
+.......+. .+++|+.|++++|. .++.......+|++|++++| .+.......+..+++|++|++++|.+.+..+
T Consensus 188 i~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~ 265 (477)
T 2id5_A 188 INAIRDYSFK-RLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265 (477)
T ss_dssp CCEECTTCSC-SCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEECT
T ss_pred CcEeChhhcc-cCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccCh
Confidence 6644333343 67888888888876 34445555668888888886 6776666677788888888888876543222
Q ss_pred ccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCC
Q 003270 327 LELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESL 406 (835)
Q Consensus 327 ~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l 406 (835)
. .+..+++|++|++++|.+++..+..+. .+++|++|++++ +.+
T Consensus 266 ~-----------------------------~~~~l~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~L~~-N~l 308 (477)
T 2id5_A 266 S-----------------------------MLHELLRLQEIQLVGGQLAVVEPYAFR-------GLNYLRVLNVSG-NQL 308 (477)
T ss_dssp T-----------------------------SCTTCTTCCEEECCSSCCSEECTTTBT-------TCTTCCEEECCS-SCC
T ss_pred h-----------------------------hccccccCCEEECCCCccceECHHHhc-------CcccCCEEECCC-CcC
Confidence 1 245667777777777777765443332 346788888888 477
Q ss_pred chhhhhhccCCCCCCCccEEEecCCC
Q 003270 407 TNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 407 ~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
++..+..+ ..+++|++|++++++
T Consensus 309 ~~~~~~~~---~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 309 TTLEESVF---HSVGNLETLILDSNP 331 (477)
T ss_dssp SCCCGGGB---SCGGGCCEEECCSSC
T ss_pred ceeCHhHc---CCCcccCEEEccCCC
Confidence 77666666 667788888887775
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=234.50 Aligned_cols=161 Identities=19% Similarity=0.225 Sum_probs=109.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++|+.+++++|.+. +..+..+..+++|++|++++|+.+. .++.......+|++|++++|.... ...
T Consensus 172 l~~l~~L~~L~l~~n~i~-------~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~l~~-~~~ 241 (477)
T 2id5_A 172 LSHLHGLIVLRLRHLNIN-------AIRDYSFKRLYRLKVLEISHWPYLD--TMTPNCLYGLNLTSLSITHCNLTA-VPY 241 (477)
T ss_dssp HTTCTTCCEEEEESCCCC-------EECTTCSCSCTTCCEEEEECCTTCC--EECTTTTTTCCCSEEEEESSCCCS-CCH
T ss_pred hcccCCCcEEeCCCCcCc-------EeChhhcccCcccceeeCCCCcccc--ccCcccccCccccEEECcCCcccc-cCH
Confidence 456666777777766664 3333456677778888888775332 244444445578888888876543 324
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+++|++|++++|.+++++. .+..+++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..|
T Consensus 242 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~ 316 (477)
T 2id5_A 242 LAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQ-LAVVEPYAF---RGLNYLRVLNVSGNQLTT-LEESVF 316 (477)
T ss_dssp HHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSC-CSEECTTTB---TTCTTCCEEECCSSCCSC-CCGGGB
T ss_pred HHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCc-cceECHHHh---cCcccCCEEECCCCcCce-eCHhHc
Confidence 567778888888888888777554 57777888888888877 776655543 677788888888887776 344556
Q ss_pred hhCCCccEEEccCCCCC
Q 003270 650 AYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~~ 666 (835)
..+++|++|++++|+-.
T Consensus 317 ~~l~~L~~L~l~~N~l~ 333 (477)
T 2id5_A 317 HSVGNLETLILDSNPLA 333 (477)
T ss_dssp SCGGGCCEEECCSSCEE
T ss_pred CCCcccCEEEccCCCcc
Confidence 67778888888877643
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-23 Score=235.45 Aligned_cols=118 Identities=19% Similarity=0.218 Sum_probs=69.5
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhcccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQ 601 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~ 601 (835)
+..+++|++|++++| .+. +..+..+..+++|+.|++++|...+. +..+..+++|+.|+|++|.++.+|..+..+++
T Consensus 250 l~~l~~L~~L~Ls~N-~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~l--~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~l~~ 325 (597)
T 3oja_B 250 LLNYPGLVEVDLSYN-ELE-KIMYHPFVKMQRLERLYISNNRLVAL--NLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR 325 (597)
T ss_dssp GGGCTTCSEEECCSS-CCC-EEESGGGTTCSSCCEEECTTSCCCEE--ECSSSCCTTCCEEECCSSCCCCCGGGHHHHTT
T ss_pred hccCCCCCEEECCCC-ccC-CCCHHHhcCccCCCEEECCCCCCCCC--CcccccCCCCcEEECCCCCCCccCcccccCCC
Confidence 334455555555554 232 12233444555555555555543332 23345567777777777777777777777777
Q ss_pred ccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 602 LKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 602 L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
|+.|++++|+ +++.. +..+++|+.|++++|.+........+.
T Consensus 326 L~~L~L~~N~-l~~~~------~~~~~~L~~L~l~~N~~~~~~~~~~~~ 367 (597)
T 3oja_B 326 LENLYLDHNS-IVTLK------LSTHHTLKNLTLSHNDWDCNSLRALFR 367 (597)
T ss_dssp CSEEECCSSC-CCCCC------CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred CCEEECCCCC-CCCcC------hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence 7777777777 65442 255777888888888777644444443
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-23 Score=219.64 Aligned_cols=273 Identities=16% Similarity=0.295 Sum_probs=171.6
Q ss_pred HhhhccccchhhhHHHHHHHHhhcCCCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCc
Q 003270 47 QKIWKSGWILQMTYCIWQWRAASAHEDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLE 126 (835)
Q Consensus 47 ~~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~ 126 (835)
+..+......+++.||++|+.+..++..|+.++++...+....+.... .++++.+++++ +.+.+..+. +..+++|+
T Consensus 21 f~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~~~~~~~~--~~~l~~L~l~~-n~l~~~~~~-~~~~~~L~ 96 (336)
T 2ast_B 21 FSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL--SQGVIAFRCPR-SFMDQPLAE-HFSPFRVQ 96 (336)
T ss_dssp HTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCHHHHHHHH--HTTCSEEECTT-CEECSCCCS-CCCCBCCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCHHHHHhhh--hccceEEEcCC-ccccccchh-hccCCCCC
Confidence 333333345666789999999988899999999998777754443332 16889999998 455554333 55789999
Q ss_pred EEEcCCcccChh-hHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCc-cccc-----cccCCCCCcEEEec
Q 003270 127 ALTLGRGQLGDA-FFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKC-RVMR-----VSIRCPQLEHLSLK 199 (835)
Q Consensus 127 ~L~l~~~~i~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~-----~~~~l~~L~~L~l~ 199 (835)
+|++++|.+++. ++..+..+++|++|++++|.+++..+..+..+++|++|++++| .+.. ...++++|++|+++
T Consensus 97 ~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~ 176 (336)
T 2ast_B 97 HMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLS 176 (336)
T ss_dssp EEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECC
T ss_pred EEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCC
Confidence 999999998876 8888889999999999999888777777777888888888887 4442 12345566666665
Q ss_pred cc-chH-----HHhhcCC-CCcEEeecCCC-CCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecC
Q 003270 200 RS-NMA-----QAVLNCP-LLHLLDIASCH-KLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 271 (835)
Q Consensus 200 ~~-~i~-----~~~~~~~-~L~~L~l~~~~-~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 271 (835)
+| .+. ..+..++ +|++|++++|. .+++..++..+.++++|++|++++|..+++..+..+. .+++|++|+++
T Consensus 177 ~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~ 255 (336)
T 2ast_B 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLS 255 (336)
T ss_dssp CCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECT
T ss_pred CCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCC
Confidence 55 433 2345555 66666666553 3444555555555666666666665544444444443 55566666666
Q ss_pred CCCCCCc----cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCcccccccc
Q 003270 272 YCPNISL----ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLE 328 (835)
Q Consensus 272 ~~~~l~~----~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 328 (835)
+|..+.+ .+..+++|++|++++| +++.....+.. ++..|++++|.+.+..|..
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~~~~~~l~~--~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI--VPDGTLQLLKE--ALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS--SCTTCHHHHHH--HSTTSEESCCCSCCTTCSS
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc--cCHHHHHHHHh--hCcceEEecccCccccCCc
Confidence 5543222 2445555666665554 44433333321 1333334555555544443
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.88 E-value=4.4e-22 Score=227.52 Aligned_cols=314 Identities=17% Similarity=0.159 Sum_probs=191.8
Q ss_pred cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCc-cccCCCC
Q 003270 209 NCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISL-ESVRLPM 285 (835)
Q Consensus 209 ~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~~ 285 (835)
.+.+++.+++++| .+... -+..+.++++|++|++++|. +++..+..+. .+++|+.|++++|. .++. .++.+++
T Consensus 49 ~l~~l~~l~l~~~-~l~~l-p~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 124 (597)
T 3oja_B 49 TLNNQKIVTFKNS-TMRKL-PAALLDSFRQVELLNLNDLQ-IEEIDTYAFA-YAHTIQKLYMGFNAIRYLPPHVFQNVPL 124 (597)
T ss_dssp GGCCCSEEEESSC-EESEE-CTHHHHHCCCCSEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCceEEEeeCC-CCCCc-CHHHHccCCCCcEEECCCCC-CCCCChHHhc-CCCCCCEEECCCCcCCCCCHHHHcCCCC
Confidence 3578888998887 34421 13456788899999999888 7755444554 77888888888876 3333 3567777
Q ss_pred CcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcc
Q 003270 286 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALH 365 (835)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~ 365 (835)
|++|++++| .+....+..++.+++|++|++++|.+.+..|.. +..+++|+
T Consensus 125 L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-----------------------------~~~l~~L~ 174 (597)
T 3oja_B 125 LTVLVLERN-DLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDT-----------------------------FQATTSLQ 174 (597)
T ss_dssp CCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTT-----------------------------TTTCTTCC
T ss_pred CCEEEeeCC-CCCCCCHHHhccCCCCCEEEeeCCcCCCCChhh-----------------------------hhcCCcCc
Confidence 888888776 566554445667777777777777654433322 33445555
Q ss_pred eeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcce
Q 003270 366 RINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLV 445 (835)
Q Consensus 366 ~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~ 445 (835)
.|++++|.+++..+. .+++|+.|++++ +.+++. ...++|+.|+++++. +..++..
T Consensus 175 ~L~L~~N~l~~~~~~----------~l~~L~~L~l~~-n~l~~l--------~~~~~L~~L~ls~n~-l~~~~~~----- 229 (597)
T 3oja_B 175 NLQLSSNRLTHVDLS----------LIPSLFHANVSY-NLLSTL--------AIPIAVEELDASHNS-INVVRGP----- 229 (597)
T ss_dssp EEECTTSCCSBCCGG----------GCTTCSEEECCS-SCCSEE--------ECCTTCSEEECCSSC-CCEEECS-----
T ss_pred EEECcCCCCCCcChh----------hhhhhhhhhccc-Cccccc--------cCCchhheeeccCCc-ccccccc-----
Confidence 555555555443211 235555555555 344321 223445555555553 2222100
Q ss_pred EEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccC
Q 003270 446 SLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINC 525 (835)
Q Consensus 446 ~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~ 525 (835)
..++|+.|++++|. +.+ +. .+..+++|+.|++++|.+. +..|..+..+
T Consensus 230 ---------------~~~~L~~L~L~~n~-l~~----~~-----~l~~l~~L~~L~Ls~N~l~-------~~~~~~~~~l 277 (597)
T 3oja_B 230 ---------------VNVELTILKLQHNN-LTD----TA-----WLLNYPGLVEVDLSYNELE-------KIMYHPFVKM 277 (597)
T ss_dssp ---------------CCSCCCEEECCSSC-CCC----CG-----GGGGCTTCSEEECCSSCCC-------EEESGGGTTC
T ss_pred ---------------cCCCCCEEECCCCC-CCC----Ch-----hhccCCCCCEEECCCCccC-------CCCHHHhcCc
Confidence 01344444444432 111 11 1566777777777777775 4556677777
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEE
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 605 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L 605 (835)
++|+.|++++| .++. ++..+..+++|+.|++++|..... +..+..+++|+.|++++|.+++++ +..+++|+.|
T Consensus 278 ~~L~~L~Ls~N-~l~~--l~~~~~~l~~L~~L~Ls~N~l~~i--~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L 350 (597)
T 3oja_B 278 QRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLSHNHLLHV--ERNQPQFDRLENLYLDHNSIVTLK--LSTHHTLKNL 350 (597)
T ss_dssp SSCCEEECTTS-CCCE--EECSSSCCTTCCEEECCSSCCCCC--GGGHHHHTTCSEEECCSSCCCCCC--CCTTCCCSEE
T ss_pred cCCCEEECCCC-CCCC--CCcccccCCCCcEEECCCCCCCcc--CcccccCCCCCEEECCCCCCCCcC--hhhcCCCCEE
Confidence 78888888877 4543 455556677788888887775532 556677778888888888777664 5567778888
Q ss_pred ecccccccchhhHHHH
Q 003270 606 KLQACKYLTNTSLESL 621 (835)
Q Consensus 606 ~l~~~~~l~~~~~~~l 621 (835)
++++|+ +.+.....+
T Consensus 351 ~l~~N~-~~~~~~~~~ 365 (597)
T 3oja_B 351 TLSHND-WDCNSLRAL 365 (597)
T ss_dssp ECCSSC-EEHHHHHHH
T ss_pred EeeCCC-CCChhHHHH
Confidence 888877 665554443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.88 E-value=5.4e-24 Score=222.19 Aligned_cols=247 Identities=13% Similarity=0.134 Sum_probs=195.7
Q ss_pred HHHHHHhhcCCCC--ceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhh--HHHHHHhhCCcCcEEEcCC-cccC
Q 003270 62 IWQWRAASAHEDF--WRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHL--LVMKAVSLLRNLEALTLGR-GQLG 136 (835)
Q Consensus 62 ~~~W~~~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~i~ 136 (835)
...|.. ..++|. |.+|.|+.... ..++++|++++ +.+.+ .++..+..+++|++|++++ |.+.
T Consensus 24 l~~W~~-~~~~C~~~w~gv~C~~~~~-----------~~~l~~L~L~~-~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~ 90 (313)
T 1ogq_A 24 LSSWLP-TTDCCNRTWLGVLCDTDTQ-----------TYRVNNLDLSG-LNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90 (313)
T ss_dssp GTTCCT-TSCTTTTCSTTEEECCSSS-----------CCCEEEEEEEC-CCCSSCEECCGGGGGCTTCSEEEEEEETTEE
T ss_pred ccCCCC-CCCCCcCCCcceEeCCCCC-----------CceEEEEECCC-CCccCCcccChhHhCCCCCCeeeCCCCCccc
Confidence 456853 456777 99999975431 24799999999 46776 6778999999999999995 9999
Q ss_pred hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccc-c---ccCCCCCcEEEecccchH----HHhh
Q 003270 137 DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-V---SIRCPQLEHLSLKRSNMA----QAVL 208 (835)
Q Consensus 137 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~---~~~l~~L~~L~l~~~~i~----~~~~ 208 (835)
+.+|..++.+++|++|++++|.+++.+|..+.++++|++|++++|.+.. + ...+++|++|++++|.+. ..+.
T Consensus 91 ~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~ 170 (313)
T 1ogq_A 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170 (313)
T ss_dssp SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG
T ss_pred ccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh
Confidence 9999999999999999999999998999999999999999999998863 2 346889999999988775 5667
Q ss_pred cCC-CCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCccccCCCC
Q 003270 209 NCP-LLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLESVRLPM 285 (835)
Q Consensus 209 ~~~-~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~~~~~~ 285 (835)
.++ +|++|++++|. ++ +.+|..+..++ |++|++++|. +++..+..+. .+++|+.|++++|. ..+..+..+++
T Consensus 171 ~l~~~L~~L~L~~N~-l~-~~~~~~~~~l~-L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~l~~ 245 (313)
T 1ogq_A 171 SFSKLFTSMTISRNR-LT-GKIPPTFANLN-LAFVDLSRNM-LEGDASVLFG-SDKNTQKIHLAKNSLAFDLGKVGLSKN 245 (313)
T ss_dssp CCCTTCCEEECCSSE-EE-EECCGGGGGCC-CSEEECCSSE-EEECCGGGCC-TTSCCSEEECCSSEECCBGGGCCCCTT
T ss_pred hhhhcCcEEECcCCe-ee-ccCChHHhCCc-ccEEECcCCc-ccCcCCHHHh-cCCCCCEEECCCCceeeecCcccccCC
Confidence 777 88999998873 44 23456667776 8899998887 6655444444 78888888888886 33444667788
Q ss_pred CcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccc
Q 003270 286 LTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSL 327 (835)
Q Consensus 286 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 327 (835)
|++|++++| .+.+..+..+..+++|++|++++|.+.+.+|.
T Consensus 246 L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 246 LNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp CCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred CCEEECcCC-cccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 888888887 77777777788888888888888887776664
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.86 E-value=3.4e-21 Score=203.39 Aligned_cols=292 Identities=17% Similarity=0.125 Sum_probs=179.4
Q ss_pred CCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccc
Q 003270 264 NLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 341 (835)
Q Consensus 264 ~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~ 341 (835)
+++.++++++. .+|..+ .++++.|+++++ .+....+..++.+++|++|++++|.+.+..|.
T Consensus 34 ~l~~l~~~~~~l~~ip~~~--~~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 96 (332)
T 2ft3_A 34 HLRVVQCSDLGLKAVPKEI--SPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNKISKIHEK-------------- 96 (332)
T ss_dssp ETTEEECCSSCCSSCCSCC--CTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCCCEECGG--------------
T ss_pred cCCEEECCCCCccccCCCC--CCCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCccCccCHh--------------
Confidence 45666666554 344333 256667777665 55555555666677777777777654332221
Q ss_pred cccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCC
Q 003270 342 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 421 (835)
Q Consensus 342 ~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 421 (835)
.+.++++|++|++++|.++..... ..++|++|++++ +.+++..+..+ ..++
T Consensus 97 ---------------~~~~l~~L~~L~L~~n~l~~l~~~----------~~~~L~~L~l~~-n~i~~~~~~~~---~~l~ 147 (332)
T 2ft3_A 97 ---------------AFSPLRKLQKLYISKNHLVEIPPN----------LPSSLVELRIHD-NRIRKVPKGVF---SGLR 147 (332)
T ss_dssp ---------------GSTTCTTCCEEECCSSCCCSCCSS----------CCTTCCEEECCS-SCCCCCCSGGG---SSCS
T ss_pred ---------------HhhCcCCCCEEECCCCcCCccCcc----------ccccCCEEECCC-CccCccCHhHh---CCCc
Confidence 244556666666666666533211 115777777777 46666554455 5667
Q ss_pred CccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccc
Q 003270 422 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 501 (835)
Q Consensus 422 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~ 501 (835)
+|++|+++++. ++.. +..|.. +..+ +|+.++
T Consensus 148 ~L~~L~l~~n~-l~~~------------------------------------------~~~~~~-----~~~l-~L~~L~ 178 (332)
T 2ft3_A 148 NMNCIEMGGNP-LENS------------------------------------------GFEPGA-----FDGL-KLNYLR 178 (332)
T ss_dssp SCCEEECCSCC-CBGG------------------------------------------GSCTTS-----SCSC-CCSCCB
T ss_pred cCCEEECCCCc-cccC------------------------------------------CCCccc-----ccCC-ccCEEE
Confidence 77777777664 3211 011111 3333 566666
Q ss_pred cccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccce
Q 003270 502 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 581 (835)
Q Consensus 502 l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 581 (835)
+++|.+ ..+|..+. ++|++|++++| .+.+ ..+..+..+++|++|++++|..... .+..+..+++|++
T Consensus 179 l~~n~l--------~~l~~~~~--~~L~~L~l~~n-~i~~-~~~~~l~~l~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~ 245 (332)
T 2ft3_A 179 ISEAKL--------TGIPKDLP--ETLNELHLDHN-KIQA-IELEDLLRYSKLYRLGLGHNQIRMI-ENGSLSFLPTLRE 245 (332)
T ss_dssp CCSSBC--------SSCCSSSC--SSCSCCBCCSS-CCCC-CCTTSSTTCTTCSCCBCCSSCCCCC-CTTGGGGCTTCCE
T ss_pred CcCCCC--------CccCcccc--CCCCEEECCCC-cCCc-cCHHHhcCCCCCCEEECCCCcCCcC-ChhHhhCCCCCCE
Confidence 666665 33454332 67777788777 3432 2234566777888888888765443 2456788888888
Q ss_pred eeecCccccCchHHHhccccccEEecccccccchhhHHHHHhc---CCCCCccEEeCCCcccchH-HHHHHHhhCCCccE
Q 003270 582 LDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK---GSLPALQELDLSYGTLCQS-AIEELLAYCTHLTH 657 (835)
Q Consensus 582 L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~n~~~~~-~~~~~l~~~~~L~~ 657 (835)
|++++|.++.+|..+..+++|++|++++|+ +++.....+... ...+.|+.|++++|.+... ..+..|..+++|+.
T Consensus 246 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~ 324 (332)
T 2ft3_A 246 LHLDNNKLSRVPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324 (332)
T ss_dssp EECCSSCCCBCCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTT
T ss_pred EECCCCcCeecChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhh
Confidence 888888888888888888888888888887 777655544211 1246788899998887631 34566788888999
Q ss_pred EEccCCC
Q 003270 658 VSLNGCG 664 (835)
Q Consensus 658 L~l~~~~ 664 (835)
+++++|.
T Consensus 325 l~l~~n~ 331 (332)
T 2ft3_A 325 IQFGNYK 331 (332)
T ss_dssp EEC----
T ss_pred hhccccc
Confidence 8888874
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=8e-21 Score=200.44 Aligned_cols=292 Identities=17% Similarity=0.129 Sum_probs=169.2
Q ss_pred CCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccc
Q 003270 264 NLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCR 341 (835)
Q Consensus 264 ~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~ 341 (835)
+++.++++++. .+|..+ .++++.|+++++ .+.+..+..++.+++|++|++++|.+.+..|.
T Consensus 32 ~l~~l~~~~~~l~~lp~~~--~~~l~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------------- 94 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDL--PPDTALLDLQNN-KITEIKDGDFKNLKNLHTLILINNKISKISPG-------------- 94 (330)
T ss_dssp ETTEEECTTSCCCSCCCSC--CTTCCEEECCSS-CCCCBCTTTTTTCTTCCEEECCSSCCCCBCTT--------------
T ss_pred CCeEEEecCCCccccCccC--CCCCeEEECCCC-cCCEeChhhhccCCCCCEEECCCCcCCeeCHH--------------
Confidence 34555555443 333322 245666666665 55555445566666677777666654432222
Q ss_pred cccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCC
Q 003270 342 KFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCP 421 (835)
Q Consensus 342 ~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~ 421 (835)
.+..+++|++|++++|.++..... ..++|++|++++ +.+++..+..+ ..++
T Consensus 95 ---------------~~~~l~~L~~L~Ls~n~l~~l~~~----------~~~~L~~L~l~~-n~l~~~~~~~~---~~l~ 145 (330)
T 1xku_A 95 ---------------AFAPLVKLERLYLSKNQLKELPEK----------MPKTLQELRVHE-NEITKVRKSVF---NGLN 145 (330)
T ss_dssp ---------------TTTTCTTCCEEECCSSCCSBCCSS----------CCTTCCEEECCS-SCCCBBCHHHH---TTCT
T ss_pred ---------------HhcCCCCCCEEECCCCcCCccChh----------hcccccEEECCC-CcccccCHhHh---cCCc
Confidence 133445555555555555432111 124677777777 46666555555 5666
Q ss_pred CccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccc
Q 003270 422 MLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLG 501 (835)
Q Consensus 422 ~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~ 501 (835)
+|+.|+++++. ++... ..+.. +..+++|+.++
T Consensus 146 ~L~~L~l~~n~-l~~~~------------------------------------------~~~~~-----~~~l~~L~~L~ 177 (330)
T 1xku_A 146 QMIVVELGTNP-LKSSG------------------------------------------IENGA-----FQGMKKLSYIR 177 (330)
T ss_dssp TCCEEECCSSC-CCGGG------------------------------------------BCTTG-----GGGCTTCCEEE
T ss_pred cccEEECCCCc-CCccC------------------------------------------cChhh-----ccCCCCcCEEE
Confidence 77777776664 22100 00111 44455566666
Q ss_pred cccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccce
Q 003270 502 IEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTM 581 (835)
Q Consensus 502 l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 581 (835)
+++|.+ ..+|..+ .++|++|++++| .+++ ..+..+..+++|++|++++|..... .+..+..+++|++
T Consensus 178 l~~n~l--------~~l~~~~--~~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~ 244 (330)
T 1xku_A 178 IADTNI--------TTIPQGL--PPSLTELHLDGN-KITK-VDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRE 244 (330)
T ss_dssp CCSSCC--------CSCCSSC--CTTCSEEECTTS-CCCE-ECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCE
T ss_pred CCCCcc--------ccCCccc--cccCCEEECCCC-cCCc-cCHHHhcCCCCCCEEECCCCcCcee-ChhhccCCCCCCE
Confidence 665555 3344333 267777777776 3433 2344566777777777777764432 2446777888888
Q ss_pred eeecCccccCchHHHhccccccEEecccccccchhhHHHHHhc---CCCCCccEEeCCCcccchHH-HHHHHhhCCCccE
Q 003270 582 LDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKK---GSLPALQELDLSYGTLCQSA-IEELLAYCTHLTH 657 (835)
Q Consensus 582 L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~---~~~~~L~~L~l~~n~~~~~~-~~~~l~~~~~L~~ 657 (835)
|++++|.++.+|..+..+++|++|++++|+ +++.....+... ...+.|+.+++++|.+.... .+..|..+.+++.
T Consensus 245 L~L~~N~l~~lp~~l~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~ 323 (330)
T 1xku_A 245 LHLNNNKLVKVPGGLADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323 (330)
T ss_dssp EECCSSCCSSCCTTTTTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGG
T ss_pred EECCCCcCccCChhhccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeE
Confidence 888888888887777788888888888887 776655443211 12467788888888775422 3456777888888
Q ss_pred EEccCC
Q 003270 658 VSLNGC 663 (835)
Q Consensus 658 L~l~~~ 663 (835)
+++++|
T Consensus 324 l~L~~N 329 (330)
T 1xku_A 324 VQLGNY 329 (330)
T ss_dssp EEC---
T ss_pred EEeccc
Confidence 888776
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=194.87 Aligned_cols=267 Identities=12% Similarity=0.096 Sum_probs=154.0
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccC-CCCCcEEEeccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~L~~L~l~~~ 201 (835)
+++++|++++|.+++..+..|+.+++|++|++++|.+++..|..+.++++|++|++++|.+..+... .++|++|++++|
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~~L~~L~l~~n 131 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHEN 131 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccChhhcccccEEECCCC
Confidence 5677788887777776666777788888888888877766677777777788888877777655432 356777777766
Q ss_pred chH----HHhhcCCCCcEEeecCCCCCCH-HHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--
Q 003270 202 NMA----QAVLNCPLLHLLDIASCHKLSD-AAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 274 (835)
Q Consensus 202 ~i~----~~~~~~~~L~~L~l~~~~~l~~-~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-- 274 (835)
.+. ..+..+++|++|++++|. +.. +..+..+.++++|++|++++|. ++. .+.. ..++|++|++++|.
T Consensus 132 ~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~-l~~~---~~~~L~~L~l~~n~l~ 205 (330)
T 1xku_A 132 EITKVRKSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADTN-ITT-IPQG---LPPSLTELHLDGNKIT 205 (330)
T ss_dssp CCCBBCHHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSSC-CCS-CCSS---CCTTCSEEECTTSCCC
T ss_pred cccccCHhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCCc-ccc-CCcc---ccccCCEEECCCCcCC
Confidence 554 446667777777777763 332 1223445666777777777766 442 1111 12456666666554
Q ss_pred -CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccc
Q 003270 275 -NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMML 353 (835)
Q Consensus 275 -~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l 353 (835)
..+..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+. .+|.
T Consensus 206 ~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-------------------------- 257 (330)
T 1xku_A 206 KVDAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNNKLV-KVPG-------------------------- 257 (330)
T ss_dssp EECTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSSCCS-SCCT--------------------------
T ss_pred ccCHHHhcCCCCCCEEECCCC-cCceeChhhccCCCCCCEEECCCCcCc-cCCh--------------------------
Confidence 11334445555555555554 444444444555555555555555432 2221
Q ss_pred ceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCch--hhhhhccCCCCCCCccEEEecCC
Q 003270 354 SSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN--SVCEVFSDGGGCPMLKSLVLDNC 431 (835)
Q Consensus 354 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~--~~~~~~~~~~~~~~L~~L~l~~~ 431 (835)
.+..+++|++|++++|.+++.....+..... ....+.++.+++++ |.+.. ..+..+ ..+++++.++++++
T Consensus 258 ---~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~-~~~~~~l~~l~l~~-N~~~~~~i~~~~f---~~~~~l~~l~L~~N 329 (330)
T 1xku_A 258 ---GLADHKYIQVVYLHNNNISAIGSNDFCPPGY-NTKKASYSGVSLFS-NPVQYWEIQPSTF---RCVYVRAAVQLGNY 329 (330)
T ss_dssp ---TTTTCSSCCEEECCSSCCCCCCTTSSSCSSC-CTTSCCCSEEECCS-SSSCGGGSCGGGG---TTCCCGGGEEC---
T ss_pred ---hhccCCCcCEEECCCCcCCccChhhcCCccc-ccccccccceEeec-CcccccccCcccc---ccccceeEEEeccc
Confidence 2445666677777777766654332221110 00235677777777 45543 233444 55677777777665
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.6e-21 Score=202.98 Aligned_cols=250 Identities=16% Similarity=0.179 Sum_probs=167.8
Q ss_pred HHHHHH---hhcCCCCceeeccCCCCCCHHHHHHHH--hcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccC
Q 003270 62 IWQWRA---ASAHEDFWRCLNFENRKISVEQFEDVC--QRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLG 136 (835)
Q Consensus 62 ~~~W~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~ 136 (835)
...|.. .....+.|.++.+. .+...+ ...++++.|++++ +.+. .++..+..+++|++|++++|.+.
T Consensus 47 ~~~w~~~~~~~~~~~~~~g~~~~-------~~~~~l~~~~~~~l~~L~L~~-n~l~-~lp~~l~~l~~L~~L~L~~n~l~ 117 (328)
T 4fcg_A 47 HSAWRQANSNNPQIETRTGRALK-------ATADLLEDATQPGRVALELRS-VPLP-QFPDQAFRLSHLQHMTIDAAGLM 117 (328)
T ss_dssp HHHHHHHTTTCTTSCCSHHHHHH-------HHHHHHHHHTSTTCCEEEEES-SCCS-SCCSCGGGGTTCSEEEEESSCCC
T ss_pred hhhhcccccccccccccCCcchh-------hhHHHHhcccccceeEEEccC-CCch-hcChhhhhCCCCCEEECCCCCcc
Confidence 356762 33456778876653 222222 3467899999999 4566 45667888999999999999998
Q ss_pred hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccc-cccCCCCCcEEEecccchHHHhhcCCCCcE
Q 003270 137 DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMR-VSIRCPQLEHLSLKRSNMAQAVLNCPLLHL 215 (835)
Q Consensus 137 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~ 215 (835)
.+|..++.+++|++|++++|.++ .+|..+..+++|++|++++|.+.. +... +.... +...+..+++|++
T Consensus 118 -~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~---~~~~~-----~~~~~~~l~~L~~ 187 (328)
T 4fcg_A 118 -ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEP---LASTD-----ASGEHQGLVNLQS 187 (328)
T ss_dssp -CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSC---SEEEC------CCCEEESTTCCE
T ss_pred -chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChh---Hhhcc-----chhhhccCCCCCE
Confidence 78888999999999999999987 788888889999999998875432 2211 11111 1122344566666
Q ss_pred EeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecC
Q 003270 216 LDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLH 292 (835)
Q Consensus 216 L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~ 292 (835)
|++++| .++ .+|..++++++|++|++++|. +++ .+..+. .+++|++|++++|. .+|..++.+++|++|+++
T Consensus 188 L~L~~n-~l~--~lp~~l~~l~~L~~L~L~~N~-l~~-l~~~l~-~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~ 261 (328)
T 4fcg_A 188 LRLEWT-GIR--SLPASIANLQNLKSLKIRNSP-LSA-LGPAIH-HLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK 261 (328)
T ss_dssp EEEEEE-CCC--CCCGGGGGCTTCCEEEEESSC-CCC-CCGGGG-GCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred EECcCC-CcC--cchHhhcCCCCCCEEEccCCC-CCc-Cchhhc-cCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence 666665 344 344556666666666666666 442 222333 66666677766655 456667777788888887
Q ss_pred CCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeec
Q 003270 293 SCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL 337 (835)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~ 337 (835)
+| .+.+..+..+..+++|++|++++|...+.+|..+.+++.+..
T Consensus 262 ~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~ 305 (328)
T 4fcg_A 262 DC-SNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305 (328)
T ss_dssp TC-TTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCE
T ss_pred CC-CchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceE
Confidence 76 555666667778888888888888888888877665555443
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.2e-21 Score=201.09 Aligned_cols=167 Identities=17% Similarity=0.127 Sum_probs=110.1
Q ss_pred CcCcEEEcCCcccCh--hhHHhhcCCCCCCEEEecC-CCCCcccccccccCCcccEEeccCccccc-c---ccCCCCCcE
Q 003270 123 RNLEALTLGRGQLGD--AFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMR-V---SIRCPQLEH 195 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~---~~~l~~L~~ 195 (835)
.+++.|++++|.+.+ .+|..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.. + ..++++|++
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~ 129 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence 579999999999998 8999999999999999995 99988999999999999999999988762 2 235666777
Q ss_pred EEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCC-CCCEEeCCCCCCCChHHHHHHHHhCCCCcEEec
Q 003270 196 LSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCP-QLESLDMSNCSCVSDESLREIALSCANLRILNS 270 (835)
Q Consensus 196 L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~-~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l 270 (835)
|++++|.+. ..+..+++|++|++++| .++ +.+|..+.+++ +|++|++++|. +++..+..+. .++ |+.|++
T Consensus 130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~-~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~-~l~-L~~L~L 204 (313)
T 1ogq_A 130 LDFSYNALSGTLPPSISSLPNLVGITFDGN-RIS-GAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFA-NLN-LAFVDL 204 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSS-CCE-EECCGGGGCCCTTCCEEECCSSE-EEEECCGGGG-GCC-CSEEEC
T ss_pred EeCCCCccCCcCChHHhcCCCCCeEECcCC-ccc-CcCCHHHhhhhhcCcEEECcCCe-eeccCChHHh-CCc-ccEEEC
Confidence 777666554 44556666666666665 233 12344455555 66666666665 4433333333 333 555555
Q ss_pred CCCC---CCCccccCCCCCcEEecCCC
Q 003270 271 SYCP---NISLESVRLPMLTVLQLHSC 294 (835)
Q Consensus 271 ~~~~---~l~~~~~~~~~L~~L~l~~~ 294 (835)
++|. ..+..+..+++|++|++++|
T Consensus 205 s~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 205 SRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp CSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred cCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 5553 23333344444444444443
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-20 Score=193.57 Aligned_cols=267 Identities=14% Similarity=0.139 Sum_probs=172.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccC-CCCCcEEEeccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR-CPQLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-l~~L~~L~l~~~ 201 (835)
++|++|++++|.+.+..+.+|..+++|++|++++|.+++..|..+.++++|++|++++|.+..+... .++|++|++++|
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~L~~L~l~~n 133 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDN 133 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCCTTCCEEECCSS
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCccccccCCEEECCCC
Confidence 5677777777777766666777777777777777777666666777777777777777777655432 367777777777
Q ss_pred chH----HHhhcCCCCcEEeecCCCCCCHH-HHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--
Q 003270 202 NMA----QAVLNCPLLHLLDIASCHKLSDA-AIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 274 (835)
Q Consensus 202 ~i~----~~~~~~~~L~~L~l~~~~~l~~~-~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-- 274 (835)
.+. ..+..+++|++|++++| .++.. ..+..+..+ +|++|++++|. +++ .+.. ..++|++|++++|.
T Consensus 134 ~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~-l~~~---~~~~L~~L~l~~n~i~ 206 (332)
T 2ft3_A 134 RIRKVPKGVFSGLRNMNCIEMGGN-PLENSGFEPGAFDGL-KLNYLRISEAK-LTG-IPKD---LPETLNELHLDHNKIQ 206 (332)
T ss_dssp CCCCCCSGGGSSCSSCCEEECCSC-CCBGGGSCTTSSCSC-CCSCCBCCSSB-CSS-CCSS---SCSSCSCCBCCSSCCC
T ss_pred ccCccCHhHhCCCccCCEEECCCC-ccccCCCCcccccCC-ccCEEECcCCC-CCc-cCcc---ccCCCCEEECCCCcCC
Confidence 665 34677888888888887 35421 223344555 88888888887 553 1211 23578888888776
Q ss_pred CCC-ccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhccccc
Q 003270 275 NIS-LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMML 353 (835)
Q Consensus 275 ~l~-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l 353 (835)
.++ ..+..+++|++|++++| .+.+..+..+..+++|++|++++|.+. .+|.
T Consensus 207 ~~~~~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~-------------------------- 258 (332)
T 2ft3_A 207 AIELEDLLRYSKLYRLGLGHN-QIRMIENGSLSFLPTLRELHLDNNKLS-RVPA-------------------------- 258 (332)
T ss_dssp CCCTTSSTTCTTCSCCBCCSS-CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCT--------------------------
T ss_pred ccCHHHhcCCCCCCEEECCCC-cCCcCChhHhhCCCCCCEEECCCCcCe-ecCh--------------------------
Confidence 233 45667788888888876 666666666777788888888877643 3332
Q ss_pred ceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCc--hhhhhhccCCCCCCCccEEEecCC
Q 003270 354 SSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLT--NSVCEVFSDGGGCPMLKSLVLDNC 431 (835)
Q Consensus 354 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~--~~~~~~~~~~~~~~~L~~L~l~~~ 431 (835)
.+..+++|++|++++|.+++.....+.... .....+.|+.|++++| .+. +..+..+ ..+++|+.++++++
T Consensus 259 ---~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~N-~~~~~~~~~~~~---~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 259 ---GLPDLKLLQVVYLHTNNITKVGVNDFCPVG-FGVKRAYYNGISLFNN-PVPYWEVQPATF---RCVTDRLAIQFGNY 330 (332)
T ss_dssp ---TGGGCTTCCEEECCSSCCCBCCTTSSSCSS-CCSSSCCBSEEECCSS-SSCGGGSCGGGG---TTBCCSTTEEC---
T ss_pred ---hhhcCccCCEEECCCCCCCccChhHccccc-cccccccccceEeecC-cccccccCcccc---cccchhhhhhcccc
Confidence 144566777777777777765433222210 0002467888888884 555 3444555 67788888888776
Q ss_pred C
Q 003270 432 E 432 (835)
Q Consensus 432 ~ 432 (835)
.
T Consensus 331 ~ 331 (332)
T 2ft3_A 331 K 331 (332)
T ss_dssp -
T ss_pred c
Confidence 4
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-20 Score=194.62 Aligned_cols=263 Identities=17% Similarity=0.180 Sum_probs=187.7
Q ss_pred eeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEecc
Q 003270 100 ATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 179 (835)
Q Consensus 100 l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 179 (835)
++..+++. ..+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~-~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTD-SSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCT-TTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccc-cchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 55556666 45666666777788899999999999998888899999999999999999876554 7889999999999
Q ss_pred CccccccccCCCCCcEEEecccchHH-HhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHH
Q 003270 180 KCRVMRVSIRCPQLEHLSLKRSNMAQ-AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREI 258 (835)
Q Consensus 180 ~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 258 (835)
+|.+..+. ..++|++|++++|.+.. ....+++|++|++++| .++. ..+..+..+++|++|++++|. +++..+..+
T Consensus 89 ~n~l~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 164 (317)
T 3o53_A 89 NNYVQELL-VGPSIETLHAANNNISRVSCSRGQGKKNIYLANN-KITM-LRDLDEGCRSRVQYLDLKLNE-IDTVNFAEL 164 (317)
T ss_dssp SSEEEEEE-ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSS-CCCS-GGGBCTGGGSSEEEEECTTSC-CCEEEGGGG
T ss_pred CCcccccc-CCCCcCEEECCCCccCCcCccccCCCCEEECCCC-CCCC-ccchhhhccCCCCEEECCCCC-CCcccHHHH
Confidence 99988776 55899999999998872 2345788999999998 4553 223356778899999999998 776555555
Q ss_pred HHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceee
Q 003270 259 ALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIR 336 (835)
Q Consensus 259 ~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~ 336 (835)
...+++|++|++++|. .+ .....+++|++|++++| .+.+.. ..+..+++|++|++++|.+. .+|.
T Consensus 165 ~~~l~~L~~L~L~~N~l~~~-~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~--------- 231 (317)
T 3o53_A 165 AASSDTLEHLNLQYNFIYDV-KGQVVFAKLKTLDLSSN-KLAFMG-PEFQSAAGVTWISLRNNKLV-LIEK--------- 231 (317)
T ss_dssp GGGTTTCCEEECTTSCCCEE-ECCCCCTTCCEEECCSS-CCCEEC-GGGGGGTTCSEEECTTSCCC-EECT---------
T ss_pred hhccCcCCEEECCCCcCccc-ccccccccCCEEECCCC-cCCcch-hhhcccCcccEEECcCCccc-chhh---------
Confidence 5467889999998886 22 22334777888888776 555433 33667777777777777643 2221
Q ss_pred ccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCch
Q 003270 337 LVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 408 (835)
Q Consensus 337 ~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~ 408 (835)
.+..+++|+.+++++|.+... .+......++.|+.+++++++.+++
T Consensus 232 --------------------~~~~l~~L~~L~l~~N~~~~~------~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 232 --------------------ALRFSQNLEHFDLRGNGFHCG------TLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp --------------------TCCCCTTCCEEECTTCCCBHH------HHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred --------------------HhhcCCCCCEEEccCCCccCc------CHHHHHhccccceEEECCCchhccC
Confidence 134556777777777777621 2222233456667777665444444
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.79 E-value=5.7e-19 Score=188.05 Aligned_cols=163 Identities=13% Similarity=0.131 Sum_probs=114.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCccccc--ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCch
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSD--AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPD 568 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~--~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 568 (835)
+.++++|+.+++++|.+ ..+|. .+..+++|++|++++|..+. ...+..+..+++|++|++++|...+.
T Consensus 120 ~~~l~~L~~L~L~~n~l--------~~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~- 189 (353)
T 2z80_A 120 FKPLSSLTFLNLLGNPY--------KTLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFLEELEIDASDLQSY- 189 (353)
T ss_dssp HTTCTTCSEEECTTCCC--------SSSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEEEEEEEEETTCCEE-
T ss_pred hCCCccCCEEECCCCCC--------cccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCCCEEECCCCCcCcc-
Confidence 45667777777777766 44444 56778888888888874333 22345577788888888888875443
Q ss_pred hhHhhhhccccceeeecCccccCchHH-HhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchH---H
Q 003270 569 GLYSLRSLQNLTMLDLSYTFLTNLEPV-FESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQS---A 644 (835)
Q Consensus 569 ~~~~~~~l~~L~~L~Ls~~~~~~l~~~-~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~---~ 644 (835)
.+..+..+++|++|++++|.+..++.. +..+++|++|++++|. +++.....+......+.++.++++++.+++. .
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~ 268 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQ 268 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCB-CTTCCCC------CCCCCCEEEEESCBCCHHHHHH
T ss_pred CHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCc-cccccccccccccccchhhccccccccccCcchhh
Confidence 366788888888888888888877764 4567888888888887 7765544443334567788888888877763 3
Q ss_pred HHHHHhhCCCccEEEccCCC
Q 003270 645 IEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 645 ~~~~l~~~~~L~~L~l~~~~ 664 (835)
++..+..+++|++|++++|.
T Consensus 269 l~~~l~~l~~L~~L~Ls~N~ 288 (353)
T 2z80_A 269 VMKLLNQISGLLELEFSRNQ 288 (353)
T ss_dssp HHHHHHTCTTCCEEECCSSC
T ss_pred hHHHHhcccCCCEEECCCCC
Confidence 56778888899999998884
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-19 Score=189.46 Aligned_cols=255 Identities=15% Similarity=0.128 Sum_probs=139.7
Q ss_pred cCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccch
Q 003270 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 203 (835)
Q Consensus 124 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i 203 (835)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+..+.
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~---------------- 116 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS---------------- 116 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC----------------
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC----------------
Confidence 4555555555555444445555555555555555555444444554555555555544443221
Q ss_pred HHHhhcCCCCcEEeecCCCCCCHHHHHH--HHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCc
Q 003270 204 AQAVLNCPLLHLLDIASCHKLSDAAIRL--AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISL 278 (835)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~~l~~~~l~~--~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~ 278 (835)
...+..+++|++|++++| .++ .++. .+.++++|++|++++|..++...+..+. .+++|++|++++|. ..+.
T Consensus 117 ~~~~~~l~~L~~L~L~~n-~l~--~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~ 192 (353)
T 2z80_A 117 SSWFKPLSSLTFLNLLGN-PYK--TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDASDLQSYEPK 192 (353)
T ss_dssp HHHHTTCTTCSEEECTTC-CCS--SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEETTCCEECTT
T ss_pred HhHhCCCccCCEEECCCC-CCc--ccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCCCcCccCHH
Confidence 012333344444444443 122 1111 2334444444444444223222222222 45555555555554 2345
Q ss_pred cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeee
Q 003270 279 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMV 358 (835)
Q Consensus 279 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l 358 (835)
.+..+++|++|+++++ .+.......+..+++|++|++++|.+.+..+..++. .
T Consensus 193 ~l~~l~~L~~L~l~~n-~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------------~ 245 (353)
T 2z80_A 193 SLKSIQNVSHLILHMK-QHILLLEIFVDVTSSVECLELRDTDLDTFHFSELST--------------------------G 245 (353)
T ss_dssp TTTTCSEEEEEEEECS-CSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC-------------------------------
T ss_pred HHhccccCCeecCCCC-ccccchhhhhhhcccccEEECCCCcccccccccccc--------------------------c
Confidence 5667788888888886 565555555666899999999998765533222111 2
Q ss_pred ccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 359 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 359 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
..+..++.+++..+.+++... ..+......+++|++|++++ +.++......+ ..+++|++|++++|+
T Consensus 246 ~~~~~l~~l~L~~~~l~~~~l---~~l~~~l~~l~~L~~L~Ls~-N~l~~i~~~~~---~~l~~L~~L~L~~N~ 312 (353)
T 2z80_A 246 ETNSLIKKFTFRNVKITDESL---FQVMKLLNQISGLLELEFSR-NQLKSVPDGIF---DRLTSLQKIWLHTNP 312 (353)
T ss_dssp -CCCCCCEEEEESCBCCHHHH---HHHHHHHHTCTTCCEEECCS-SCCCCCCTTTT---TTCTTCCEEECCSSC
T ss_pred cccchhhccccccccccCcch---hhhHHHHhcccCCCEEECCC-CCCCccCHHHH---hcCCCCCEEEeeCCC
Confidence 234556667777777766322 22333334678999999999 58885544444 678999999999986
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-18 Score=186.43 Aligned_cols=261 Identities=16% Similarity=0.088 Sum_probs=183.1
Q ss_pred cccccccccCCCcceEecccCCCCccchh---hhhhhcCCCccEEeccCCCCc--CchhhH-------hhhhccccceee
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCL---SATTTSCPLIESLILMSCQSI--GPDGLY-------SLRSLQNLTMLD 583 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~---~~~~~~~~~L~~L~l~~~~~~--~~~~~~-------~~~~l~~L~~L~ 583 (835)
..++..+..+++|++|++++| .+.+... ...+..+++|++|++++|... ....+. .+..+++|++|+
T Consensus 22 ~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~ 100 (386)
T 2ca6_A 22 KSVFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVR 100 (386)
T ss_dssp HTTSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEE
T ss_pred HHHHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEE
Confidence 456667778899999999998 5655432 334667899999999987432 222232 346889999999
Q ss_pred ecCccccC-----chHHHhccccccEEecccccccchhhHHHHHh-cCCC---------CCccEEeCCCcccchHHHH--
Q 003270 584 LSYTFLTN-----LEPVFESCLQLKVLKLQACKYLTNTSLESLYK-KGSL---------PALQELDLSYGTLCQSAIE-- 646 (835)
Q Consensus 584 Ls~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~---------~~L~~L~l~~n~~~~~~~~-- 646 (835)
+++|.+.. ++..+..+++|++|++++|. +++..+..+.. +..+ ++|++|++++|++++..++
T Consensus 101 Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l 179 (386)
T 2ca6_A 101 LSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 179 (386)
T ss_dssp CCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHH
Confidence 99999986 67788999999999999998 87666655532 2333 8999999999999854565
Q ss_pred -HHHhhCCCccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccC-
Q 003270 647 -ELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIP- 724 (835)
Q Consensus 647 -~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~- 724 (835)
..+..+++|++|++++|. +.+... .. .++
T Consensus 180 ~~~l~~~~~L~~L~L~~n~-l~~~g~-----------------------------------------------~~-l~~~ 210 (386)
T 2ca6_A 180 AKTFQSHRLLHTVKMVQNG-IRPEGI-----------------------------------------------EH-LLLE 210 (386)
T ss_dssp HHHHHHCTTCCEEECCSSC-CCHHHH-----------------------------------------------HH-HHHT
T ss_pred HHHHHhCCCcCEEECcCCC-CCHhHH-----------------------------------------------HH-HHHH
Confidence 567789999999999985 221100 00 012
Q ss_pred cccccCccceEeccCCCC-------ccccccccccccEEecccccchh----hhhh-----cCCccceeecccCcCChh-
Q 003270 725 PQARCFHLSSLNLSLSAN-------LKEVDVACFNLCFLNLSNCCSLE----TLKL-----DCPKLTSLFLQSCNIDEE- 787 (835)
Q Consensus 725 ~~~~~~~L~~L~l~~~~~-------l~~~~~~~~~L~~L~l~~c~~l~----~l~~-----~~~~L~~L~l~~~~i~~~- 787 (835)
.+..+++|+.|+++++.- +......+++|++|++++|.--. .++. .+++|+.|+|++|.|++.
T Consensus 211 ~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g 290 (386)
T 2ca6_A 211 GLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 290 (386)
T ss_dssp TGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHH
T ss_pred HhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHH
Confidence 445566777777776542 12223456788888888886211 1232 279999999999999843
Q ss_pred --HHHHHH-hcCCCcceeecccccCCCchH-HHHHHHhCCcchh
Q 003270 788 --GVESAI-TQCGMLETLDVRFCPKICSTS-MGRLRAACPSLKR 827 (835)
Q Consensus 788 --~l~~~~-~~~~~L~~l~l~~c~~l~~~~-~~~~~~~~p~l~~ 827 (835)
.+|..+ .++++|+.|++++|+.-.... +..+...+|+++.
T Consensus 291 ~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~ 334 (386)
T 2ca6_A 291 VRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGR 334 (386)
T ss_dssp HHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCc
Confidence 367666 678999999999987544432 6777777777663
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.4e-19 Score=188.72 Aligned_cols=58 Identities=10% Similarity=0.040 Sum_probs=37.7
Q ss_pred cCCccceeecccCcCChhHHHHHHhcCC-CcceeecccccCCCchHHHHHHHhCCcchhh
Q 003270 770 DCPKLTSLFLQSCNIDEEGVESAITQCG-MLETLDVRFCPKICSTSMGRLRAACPSLKRI 828 (835)
Q Consensus 770 ~~~~L~~L~l~~~~i~~~~l~~~~~~~~-~L~~l~l~~c~~l~~~~~~~~~~~~p~l~~l 828 (835)
.+++|++|++++|+++ ...|..+..++ +|++|++++|+.-+++....+.+-+...+.+
T Consensus 221 ~l~~L~~L~L~~N~l~-~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~ 279 (306)
T 2z66_A 221 CLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL 279 (306)
T ss_dssp TCTTCCEEECTTSCCC-BCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGG
T ss_pred CcccCCEeECCCCCCc-ccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhh
Confidence 4577888888888775 33445566664 7888888888877777666555444444433
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-19 Score=189.10 Aligned_cols=223 Identities=20% Similarity=0.258 Sum_probs=171.9
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecc
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 200 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~ 200 (835)
..++++.|++++|.+. .+|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+..+.
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~~lp------------- 143 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALP------------- 143 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCCCCC-------------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccccCc-------------
Confidence 3588999999999998 67888888999999999999998 78888888888888888888776432
Q ss_pred cchHHHhhcCCCCcEEeecCCCCCCHHHHHHH---------HhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecC
Q 003270 201 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLA---------ATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSS 271 (835)
Q Consensus 201 ~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~---------~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~ 271 (835)
..+..+++|++|++++|.... .+|.. +.++++|++|++++|. ++ ..+..+. .+++|++|+++
T Consensus 144 ----~~l~~l~~L~~L~L~~n~~~~--~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~-l~-~lp~~l~-~l~~L~~L~L~ 214 (328)
T 4fcg_A 144 ----ASIASLNRLRELSIRACPELT--ELPEPLASTDASGEHQGLVNLQSLRLEWTG-IR-SLPASIA-NLQNLKSLKIR 214 (328)
T ss_dssp ----GGGGGCTTCCEEEEEEETTCC--CCCSCSEEEC-CCCEEESTTCCEEEEEEEC-CC-CCCGGGG-GCTTCCEEEEE
T ss_pred ----HHHhcCcCCCEEECCCCCCcc--ccChhHhhccchhhhccCCCCCEEECcCCC-cC-cchHhhc-CCCCCCEEEcc
Confidence 345556666666666653222 22333 3459999999999998 76 4445554 89999999999
Q ss_pred CCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccC---cccceeeccccccccch
Q 003270 272 YCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLEL---PRLQNIRLVHCRKFADL 346 (835)
Q Consensus 272 ~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~L~~L~~~~~~~l~~l 346 (835)
+|. .++..+..+++|++|++++| .+.+..+..++.+++|++|++++|...+.+|..+ ++|+.|++.+|..+..+
T Consensus 215 ~N~l~~l~~~l~~l~~L~~L~Ls~n-~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 215 NSPLSALGPAIHHLPKLEELDLRGC-TALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp SSCCCCCCGGGGGCTTCCEEECTTC-TTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred CCCCCcCchhhccCCCCCEEECcCC-cchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence 998 77888899999999999998 6777777888999999999999999999888653 45555555555433222
Q ss_pred hhcccccceeeeccCCCcceeeeccCcccc
Q 003270 347 NLRAMMLSSIMVSNCAALHRINITSNSLQK 376 (835)
Q Consensus 347 ~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~ 376 (835)
. . .+.++++++.+.+..+.+..
T Consensus 294 P------~--~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 294 P------S--LIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp C------G--GGGGSCTTCEEECCGGGSCC
T ss_pred c------H--HHhhccCceEEeCCHHHHHH
Confidence 1 1 57889999999998776544
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.9e-18 Score=179.75 Aligned_cols=255 Identities=16% Similarity=0.242 Sum_probs=151.2
Q ss_pred eeEEEccCCcchhhHHHHHHhhC--CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcc-cccccccCCcccEE
Q 003270 100 ATEVNIYGAPAIHLLVMKAVSLL--RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNG-VQEIPINHDQLRRL 176 (835)
Q Consensus 100 l~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L 176 (835)
.+.++++++ .+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~-~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGK-NLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTC-BCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeeccccc-cCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 566666662 333 2344444 5666666666666655443 33566666666666665543 55555555555555
Q ss_pred eccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHH
Q 003270 177 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 256 (835)
Q Consensus 177 ~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~ 256 (835)
++++|.+.. .....++.+++|++|++++|..+++.+++..+.++++|++|++++|..+++..+.
T Consensus 124 ~L~~~~l~~----------------~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 124 SLEGLRLSD----------------PIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp ECTTCBCCH----------------HHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred eCcCcccCH----------------HHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 555444321 1124566778888888888766776667777778888888888888337766555
Q ss_pred HHHHhCC-CCcEEecCCCC-C-----CCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccC
Q 003270 257 EIALSCA-NLRILNSSYCP-N-----ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLEL 329 (835)
Q Consensus 257 ~~~~~~~-~L~~L~l~~~~-~-----l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 329 (835)
.....++ +|++|++++|. . ++..+..+++|++|++++|..+++..+..++.+++|++|++++|.... +..+
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~ 265 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDII--PETL 265 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCC--GGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCC--HHHH
Confidence 5445777 78888887773 2 233344667777777777643666666677777777777777774111 1000
Q ss_pred cccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchh
Q 003270 330 PRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNS 409 (835)
Q Consensus 330 ~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~ 409 (835)
. .+.++++|+.|++++| ++. ..+..+. ..++.|++++ +.+++.
T Consensus 266 ~--------------------------~l~~~~~L~~L~l~~~-i~~------~~~~~l~---~~l~~L~l~~-n~l~~~ 308 (336)
T 2ast_B 266 L--------------------------ELGEIPTLKTLQVFGI-VPD------GTLQLLK---EALPHLQINC-SHFTTI 308 (336)
T ss_dssp G--------------------------GGGGCTTCCEEECTTS-SCT------TCHHHHH---HHSTTSEESC-CCSCCT
T ss_pred H--------------------------HHhcCCCCCEEeccCc-cCH------HHHHHHH---hhCcceEEec-ccCccc
Confidence 0 2456777777777776 332 2222222 2344455665 678776
Q ss_pred hhhhc
Q 003270 410 VCEVF 414 (835)
Q Consensus 410 ~~~~~ 414 (835)
.|..+
T Consensus 309 ~~~~~ 313 (336)
T 2ast_B 309 ARPTI 313 (336)
T ss_dssp TCSSC
T ss_pred cCCcc
Confidence 65544
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-19 Score=186.79 Aligned_cols=247 Identities=14% Similarity=0.135 Sum_probs=185.4
Q ss_pred eccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccc
Q 003270 358 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVV 437 (835)
Q Consensus 358 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~ 437 (835)
+..+++|++|++++|.+++..+..+. .+++|++|++++ +.+++..+ + ..+++|++|++++|. ++.+
T Consensus 30 ~~~~~~L~~L~L~~n~l~~~~~~~~~-------~l~~L~~L~Ls~-n~l~~~~~--~---~~l~~L~~L~Ls~n~-l~~l 95 (317)
T 3o53_A 30 RQSAWNVKELDLSGNPLSQISAADLA-------PFTKLELLNLSS-NVLYETLD--L---ESLSTLRTLDLNNNY-VQEL 95 (317)
T ss_dssp HTTGGGCSEEECTTSCCCCCCHHHHT-------TCTTCCEEECTT-SCCEEEEE--E---TTCTTCCEEECCSSE-EEEE
T ss_pred hccCCCCCEEECcCCccCcCCHHHhh-------CCCcCCEEECCC-CcCCcchh--h---hhcCCCCEEECcCCc-cccc
Confidence 34567888888888888775433222 457888888888 57776543 3 677888888888875 4332
Q ss_pred cccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcc
Q 003270 438 RFCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGV 517 (835)
Q Consensus 438 ~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~ 517 (835)
+ ..++|+.++++++. +.. +....+++|+.+++++|.++ +.
T Consensus 96 ~----------------------~~~~L~~L~l~~n~-l~~----------~~~~~~~~L~~L~l~~N~l~-------~~ 135 (317)
T 3o53_A 96 L----------------------VGPSIETLHAANNN-ISR----------VSCSRGQGKKNIYLANNKIT-------ML 135 (317)
T ss_dssp E----------------------ECTTCCEEECCSSC-CSE----------EEECCCSSCEEEECCSSCCC-------SG
T ss_pred c----------------------CCCCcCEEECCCCc-cCC----------cCccccCCCCEEECCCCCCC-------Cc
Confidence 2 13667777777653 211 11344678999999999884 44
Q ss_pred cccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHh
Q 003270 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFE 597 (835)
Q Consensus 518 l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~ 597 (835)
.+..+..+++|++|++++| .+.+.........+++|++|++++|..... .....+++|++|++++|.++++|+.+.
T Consensus 136 ~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~l~~~~~ 211 (317)
T 3o53_A 136 RDLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQ 211 (317)
T ss_dssp GGBCTGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGG
T ss_pred cchhhhccCCCCEEECCCC-CCCcccHHHHhhccCcCCEEECCCCcCccc---ccccccccCCEEECCCCcCCcchhhhc
Confidence 4567888999999999998 566543444446789999999999986543 234458999999999999999988899
Q ss_pred ccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCCc
Q 003270 598 SCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNMH 667 (835)
Q Consensus 598 ~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 667 (835)
.+++|++|++++|+ ++.. +.. +..+++|+.|++++|.+....++..+..+++|+.+++.+|..+.
T Consensus 212 ~l~~L~~L~L~~N~-l~~l-~~~---~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~ 276 (317)
T 3o53_A 212 SAAGVTWISLRNNK-LVLI-EKA---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLT 276 (317)
T ss_dssp GGTTCSEEECTTSC-CCEE-CTT---CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ccCcccEEECcCCc-ccch-hhH---hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhcc
Confidence 99999999999998 8754 332 47789999999999999954788999999999999999776543
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-19 Score=189.30 Aligned_cols=242 Identities=17% Similarity=0.167 Sum_probs=165.2
Q ss_pred CCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChh--hHHhhcCCCCC
Q 003270 72 EDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA--FFHALADCSML 149 (835)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~--~~~~l~~~~~L 149 (835)
.|.|+++++++...+. ++. ...+++++|++++ +.+....+..|..+++|++|++++|.++.. .+..+..+++|
T Consensus 6 ~C~~~~l~c~~~~l~~--ip~--~~~~~l~~L~L~~-n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L 80 (306)
T 2z66_A 6 SCSGTEIRCNSKGLTS--VPT--GIPSSATRLELES-NKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSL 80 (306)
T ss_dssp EEETTEEECCSSCCSS--CCS--CCCTTCCEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCC
T ss_pred eeCCCEEEcCCCCccc--CCC--CCCCCCCEEECCC-CccCccCHhHhhccccCCEEECCCCccCcccCccccccccccc
Confidence 3568888887744321 010 1235799999998 466655445678899999999999988743 35667788999
Q ss_pred CEEEecCCCCCcccccccccCCcccEEeccCccccccc-----cCCCCCcEEEecccchH----HHhhcCCCCcEEeecC
Q 003270 150 KSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS-----IRCPQLEHLSLKRSNMA----QAVLNCPLLHLLDIAS 220 (835)
Q Consensus 150 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-----~~l~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~ 220 (835)
++|++++|.+. .++..+.++++|++|++++|.+..+. ..+++|++|++++|.+. ..+..+++|++|++++
T Consensus 81 ~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 159 (306)
T 2z66_A 81 KYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159 (306)
T ss_dssp CEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTT
T ss_pred CEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCC
Confidence 99999999886 46666788899999999988876542 35778888888887665 4466778888888887
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCC-ccccCCCCCcEEecCCCCCC
Q 003270 221 CHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NIS-LESVRLPMLTVLQLHSCEGI 297 (835)
Q Consensus 221 ~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~-~~~~~~~~L~~L~l~~~~~~ 297 (835)
| .+.+..++..+..+++|++|++++|. +++..+..+. .+++|++|++++|. .++ ..+..+++|++|++++| .+
T Consensus 160 n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l 235 (306)
T 2z66_A 160 N-SFQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HI 235 (306)
T ss_dssp C-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CC
T ss_pred C-ccccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CC
Confidence 7 34432345566777788888888877 6654444444 66777777777775 222 23456667777777765 56
Q ss_pred ChhhHHHhhhc-cCccEEEccCCCccc
Q 003270 298 TSASMAAISHS-YMLEVLELDNCNLLT 323 (835)
Q Consensus 298 ~~~~~~~l~~~-~~L~~L~l~~~~~~~ 323 (835)
.+..+..+..+ ++|++|++++|++..
T Consensus 236 ~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 236 MTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred cccCHHHHHhhhccCCEEEccCCCeec
Confidence 55555555555 366777776666543
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.8e-18 Score=189.20 Aligned_cols=159 Identities=19% Similarity=0.175 Sum_probs=106.7
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|.++ ...+..+..+++|++|++++|..+.. .-+..+..+++|++|++++|.....
T Consensus 143 ~~~l~~L~~L~L~~N~l~-------~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~--- 211 (452)
T 3zyi_A 143 FEYLSKLRELWLRNNPIE-------SIPSYAFNRVPSLMRLDLGELKKLEY-ISEGAFEGLFNLKYLNLGMCNIKDM--- 211 (452)
T ss_dssp SSSCTTCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCTTCCEEECTTSCCSSC---
T ss_pred hcccCCCCEEECCCCCcc-------eeCHhHHhcCCcccEEeCCCCCCccc-cChhhccCCCCCCEEECCCCccccc---
Confidence 455667777777777663 22223566777777777777654432 1223466777777888777765432
Q ss_pred HhhhhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+++|++|++++|.++++ |..|.++++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..+
T Consensus 212 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~ 286 (452)
T 3zyi_A 212 PNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQ-VSLIERNAF---DGLASLVELNLAHNNLSS-LPHDLF 286 (452)
T ss_dssp CCCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSC-CCEECTTTT---TTCTTCCEEECCSSCCSC-CCTTSS
T ss_pred ccccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCc-CceECHHHh---cCCCCCCEEECCCCcCCc-cChHHh
Confidence 3566777888888888887775 4477777888888888877 766655443 667778888888887765 344556
Q ss_pred hhCCCccEEEccCCCC
Q 003270 650 AYCTHLTHVSLNGCGN 665 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~ 665 (835)
..+++|++|++++|+-
T Consensus 287 ~~l~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 287 TPLRYLVELHLHHNPW 302 (452)
T ss_dssp TTCTTCCEEECCSSCE
T ss_pred ccccCCCEEEccCCCc
Confidence 6777888888887763
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.5e-18 Score=188.89 Aligned_cols=159 Identities=21% Similarity=0.212 Sum_probs=113.2
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|.++ ...+..+..+++|++|++++|..+.. ..+..+..+++|++|++++|.....
T Consensus 132 ~~~l~~L~~L~L~~N~i~-------~~~~~~~~~l~~L~~L~l~~~~~l~~-i~~~~~~~l~~L~~L~L~~n~l~~~--- 200 (440)
T 3zyj_A 132 FVYLSKLKELWLRNNPIE-------SIPSYAFNRIPSLRRLDLGELKRLSY-ISEGAFEGLSNLRYLNLAMCNLREI--- 200 (440)
T ss_dssp SCSCSSCCEEECCSCCCC-------EECTTTTTTCTTCCEEECCCCTTCCE-ECTTTTTTCSSCCEEECTTSCCSSC---
T ss_pred hhccccCceeeCCCCccc-------ccCHHHhhhCcccCEeCCCCCCCcce-eCcchhhcccccCeecCCCCcCccc---
Confidence 556677777777777763 22233567778888888887654432 2223567788888888888875532
Q ss_pred HhhhhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+++|++|++++|.++++ +..|.++++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..|
T Consensus 201 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~ 275 (440)
T 3zyj_A 201 PNLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQ-IQVIERNAF---DNLQSLVEINLAHNNLTL-LPHDLF 275 (440)
T ss_dssp CCCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCC-CCEECTTSS---TTCTTCCEEECTTSCCCC-CCTTTT
T ss_pred cccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCc-eeEEChhhh---cCCCCCCEEECCCCCCCc-cChhHh
Confidence 3577788888888888888875 4578888888888888887 776655443 677888888888888876 345566
Q ss_pred hhCCCccEEEccCCCC
Q 003270 650 AYCTHLTHVSLNGCGN 665 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~ 665 (835)
..+++|++|++++|+-
T Consensus 276 ~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSCTTCCEEECCSSCE
T ss_pred ccccCCCEEEcCCCCc
Confidence 7788888888888774
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=4.4e-18 Score=175.26 Aligned_cols=135 Identities=21% Similarity=0.160 Sum_probs=65.9
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCL 600 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~ 600 (835)
+..+++|++|++++| .++. ..+..+..+++|++|++++|..... .+..+..+++|++|++++|.+++++. .+..++
T Consensus 101 ~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 177 (285)
T 1ozn_A 101 FHGLGRLHTLHLDRC-GLQE-LGPGLFRGLAALQYLYLQDNALQAL-PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLH 177 (285)
T ss_dssp TTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred hcCCcCCCEEECCCC-cCCE-ECHhHhhCCcCCCEEECCCCccccc-CHhHhccCCCccEEECCCCcccccCHHHhcCcc
Confidence 344444444444444 2221 1123344444555555554443221 12334555555555555555555443 355555
Q ss_pred cccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 601 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+|++|++++|. +++..+..+ ..+++|+.|++++|++++ ..+..+..+++|++|++++|+
T Consensus 178 ~L~~L~l~~n~-l~~~~~~~~---~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 178 SLDRLLLHQNR-VAHVHPHAF---RDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TCCEEECCSSC-CCEECTTTT---TTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSC
T ss_pred ccCEEECCCCc-ccccCHhHc---cCcccccEeeCCCCcCCc-CCHHHcccCcccCEEeccCCC
Confidence 55555555555 554433332 445555666666655554 333445555566666666554
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.3e-17 Score=188.29 Aligned_cols=235 Identities=20% Similarity=0.109 Sum_probs=111.8
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++|+.|++++|.+ ..+|. .+++|++|++++| .++. ++. .+++|++|++++|...... .
T Consensus 61 ~~L~~L~L~~N~l--------~~lp~---~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~l~~l~--~--- 118 (622)
T 3g06_A 61 AHITTLVIPDNNL--------TSLPA---LPPELRTLEVSGN-QLTS--LPV---LPPGLLELSIFSNPLTHLP--A--- 118 (622)
T ss_dssp TTCSEEEECSCCC--------SCCCC---CCTTCCEEEECSC-CCSC--CCC---CCTTCCEEEECSCCCCCCC--C---
T ss_pred CCCcEEEecCCCC--------CCCCC---cCCCCCEEEcCCC-cCCc--CCC---CCCCCCEEECcCCcCCCCC--C---
Confidence 4455555555554 33333 3455566666655 2332 332 4555666666655533321 1
Q ss_pred hccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCC
Q 003270 575 SLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH 654 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~ 654 (835)
.+++|+.|++++|.++.+|.. +++|++|++++|. +++.. ..+++|+.|++++|.++. ++ ..+++
T Consensus 119 ~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~-l~~l~-------~~~~~L~~L~L~~N~l~~--l~---~~~~~ 182 (622)
T 3g06_A 119 LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQ-LASLP-------ALPSELCKLWAYNNQLTS--LP---MLPSG 182 (622)
T ss_dssp CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSCCC-------CCCTTCCEEECCSSCCSC--CC---CCCTT
T ss_pred CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCc-CCCcC-------CccCCCCEEECCCCCCCC--Cc---ccCCC
Confidence 345566666666665555442 3556666666654 44321 124455666666665554 22 33455
Q ss_pred ccEEEccCCCCCccccccccccCCCCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccce
Q 003270 655 LTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSS 734 (835)
Q Consensus 655 L~~L~l~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~ 734 (835)
|+.|++++|. +..++. . ...|+.|++.++ .++. +|. .+++|+.
T Consensus 183 L~~L~Ls~N~-l~~l~~-----~--------------------------~~~L~~L~L~~N-~l~~--l~~--~~~~L~~ 225 (622)
T 3g06_A 183 LQELSVSDNQ-LASLPT-----L--------------------------PSELYKLWAYNN-RLTS--LPA--LPSGLKE 225 (622)
T ss_dssp CCEEECCSSC-CSCCCC-----C--------------------------CTTCCEEECCSS-CCSS--CCC--CCTTCCE
T ss_pred CcEEECCCCC-CCCCCC-----c--------------------------cchhhEEECcCC-cccc--cCC--CCCCCCE
Confidence 6666665553 211110 0 122444444443 2222 121 1244555
Q ss_pred EeccCCCCccccccccccccEEecccccchhhhhhcCCccceeecccCcCChhHHHHHHhcCCCcceeeccccc
Q 003270 735 LNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCP 808 (835)
Q Consensus 735 L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~ 808 (835)
|+++++ .++.+...+++|+.|++++| .++.+|..+++|+.|++++|.|+ .+|..+.++++|+.|++++|+
T Consensus 226 L~Ls~N-~L~~lp~~l~~L~~L~Ls~N-~L~~lp~~~~~L~~L~Ls~N~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 226 LIVSGN-RLTSLPVLPSELKELMVSGN-RLTSLPMLPSGLLSLSVYRNQLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp EECCSS-CCSCCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSSCCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred EEccCC-ccCcCCCCCCcCcEEECCCC-CCCcCCcccccCcEEeCCCCCCC--cCCHHHhhccccCEEEecCCC
Confidence 555543 33333334455555555555 34445544555555555555553 344455555555555555554
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=180.29 Aligned_cols=232 Identities=19% Similarity=0.222 Sum_probs=169.1
Q ss_pred HHHHHhcCCCeeEEEccCCcchhhHHHH----HHhhCCcCcEEEcCCcc---cChhhHHh-------hcCCCCCCEEEec
Q 003270 90 FEDVCQRYPNATEVNIYGAPAIHLLVMK----AVSLLRNLEALTLGRGQ---LGDAFFHA-------LADCSMLKSLNVN 155 (835)
Q Consensus 90 ~~~~~~~~~~l~~L~l~~~~~~~~~~~~----~l~~~~~L~~L~l~~~~---i~~~~~~~-------l~~~~~L~~L~l~ 155 (835)
+...++.++++++|+++++ .+....+. .+..+++|++|++++|. +.+.+|.. +..+++|++|+++
T Consensus 24 l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TSHHHHHCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHhcCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 3455678889999999994 66665444 36688999999999864 44444544 4788999999999
Q ss_pred CCCCCc----ccccccccCCcccEEeccCcccccc-----cc---CC---------CCCcEEEecccchH--------HH
Q 003270 156 DATLGN----GVQEIPINHDQLRRLEITKCRVMRV-----SI---RC---------PQLEHLSLKRSNMA--------QA 206 (835)
Q Consensus 156 ~~~~~~----~~~~~~~~l~~L~~L~l~~~~~~~~-----~~---~l---------~~L~~L~l~~~~i~--------~~ 206 (835)
+|.+++ .++..+..+++|++|++++|.+... .. .+ ++|++|++++|.+. ..
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 182 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKT 182 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHH
Confidence 999887 4777788899999999999987532 11 22 88999999888765 35
Q ss_pred hhcCCCCcEEeecCCCCCCHHHHH---H-HHhcCCCCCEEeCCCCCCCChHHHHHH---HHhCCCCcEEecCCCCC----
Q 003270 207 VLNCPLLHLLDIASCHKLSDAAIR---L-AATSCPQLESLDMSNCSCVSDESLREI---ALSCANLRILNSSYCPN---- 275 (835)
Q Consensus 207 ~~~~~~L~~L~l~~~~~l~~~~l~---~-~~~~~~~L~~L~L~~~~~l~~~~~~~~---~~~~~~L~~L~l~~~~~---- 275 (835)
+..+++|++|++++| .+++.++. . .+.++++|++|+|++|. +++.+...+ ...+++|+.|++++|.-
T Consensus 183 l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~ 260 (386)
T 2ca6_A 183 FQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLSARG 260 (386)
T ss_dssp HHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHH
T ss_pred HHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCCCchhh
Confidence 667889999999988 57765522 2 56688899999999988 764332222 23778899999988861
Q ss_pred ---CCccc--cCCCCCcEEecCCCCCCCh----hhHHHh-hhccCccEEEccCCCccccc
Q 003270 276 ---ISLES--VRLPMLTVLQLHSCEGITS----ASMAAI-SHSYMLEVLELDNCNLLTSV 325 (835)
Q Consensus 276 ---l~~~~--~~~~~L~~L~l~~~~~~~~----~~~~~l-~~~~~L~~L~l~~~~~~~~~ 325 (835)
++..+ +.+++|++|++++| .+.+ ..+..+ .++++|++|++++|.+.+..
T Consensus 261 ~~~l~~~l~~~~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 261 AAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred HHHHHHHHhhccCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 23333 34788888888887 7777 355555 45788889998888876544
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.4e-18 Score=181.26 Aligned_cols=214 Identities=17% Similarity=0.157 Sum_probs=143.5
Q ss_pred CeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccC-hhhHHhhc-------CCCCCCEEEecCCCCCccccccc--c
Q 003270 99 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLG-DAFFHALA-------DCSMLKSLNVNDATLGNGVQEIP--I 168 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~-~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~~--~ 168 (835)
+++.+++++ +.+ .+|..+... |+.|++++|.+. ..++..+. .+++|++|++++|.+++.+|..+ .
T Consensus 44 ~L~~l~l~~-n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 118 (312)
T 1wwl_A 44 SLEYLLKRV-DTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA 118 (312)
T ss_dssp ECTTHHHHC-CTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred CceeEeecc-ccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence 455556666 234 234444433 777777777773 33444443 67888888888888887777755 7
Q ss_pred cCCcccEEeccCcccccccc---CC-----CCCcEEEecccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHH--h
Q 003270 169 NHDQLRRLEITKCRVMRVSI---RC-----PQLEHLSLKRSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAA--T 234 (835)
Q Consensus 169 ~l~~L~~L~l~~~~~~~~~~---~l-----~~L~~L~l~~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~--~ 234 (835)
.+++|++|++++|.+..... .+ ++|++|++++|.+. ..++.+++|++|++++|.......++..+ .
T Consensus 119 ~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 119 TGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp CSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred cCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 78888888888888765421 23 88899999888776 46778999999999998533323345555 8
Q ss_pred cCCCCCEEeCCCCCCCCh--HHHHHHHHhCCCCcEEecCCCC--CCC--ccccCCCCCcEEecCCCCCCChhhHHHhhhc
Q 003270 235 SCPQLESLDMSNCSCVSD--ESLREIALSCANLRILNSSYCP--NIS--LESVRLPMLTVLQLHSCEGITSASMAAISHS 308 (835)
Q Consensus 235 ~~~~L~~L~L~~~~~l~~--~~~~~~~~~~~~L~~L~l~~~~--~l~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 308 (835)
++++|++|++++|. ++. ..+..+...+++|++|++++|. ..+ ..+..+++|++|++++| .++ ..+..+.
T Consensus 199 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~-~ip~~~~-- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFT-GLK-QVPKGLP-- 273 (312)
T ss_dssp SCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTS-CCS-SCCSSCC--
T ss_pred cCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCC-ccC-hhhhhcc--
Confidence 89999999999998 773 3444555578999999999986 212 23345667777777775 444 2233333
Q ss_pred cCccEEEccCCCcc
Q 003270 309 YMLEVLELDNCNLL 322 (835)
Q Consensus 309 ~~L~~L~l~~~~~~ 322 (835)
++|++|++++|.+.
T Consensus 274 ~~L~~L~Ls~N~l~ 287 (312)
T 1wwl_A 274 AKLSVLDLSYNRLD 287 (312)
T ss_dssp SEEEEEECCSSCCC
T ss_pred CCceEEECCCCCCC
Confidence 56666666666543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-17 Score=177.27 Aligned_cols=260 Identities=16% Similarity=0.114 Sum_probs=128.2
Q ss_pred EccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhH----HhhcCCC-CCCEEEecCCCCCcccccccccC-----Ccc
Q 003270 104 NIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFF----HALADCS-MLKSLNVNDATLGNGVQEIPINH-----DQL 173 (835)
Q Consensus 104 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~~~l-----~~L 173 (835)
+++. +.+.+.++..+...++|++|++++|.+++..+ +++..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 4 ~ls~-n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 4 KLTL-HPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp ECCC-CTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccc-ccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 3444 34555555555555556666666666665544 5555666 66666666666655444333332 555
Q ss_pred cEEeccCccccccc--------cCC-CCCcEEEecccchH--------HHhhc-CCCCcEEeecCCCCCCH---HHHHHH
Q 003270 174 RRLEITKCRVMRVS--------IRC-PQLEHLSLKRSNMA--------QAVLN-CPLLHLLDIASCHKLSD---AAIRLA 232 (835)
Q Consensus 174 ~~L~l~~~~~~~~~--------~~l-~~L~~L~l~~~~i~--------~~~~~-~~~L~~L~l~~~~~l~~---~~l~~~ 232 (835)
++|++++|.+.... ..+ ++|++|++++|.+. ..+.. .++|++|++++| .+++ ..++..
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~ 161 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQI 161 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS-CGGGSCHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC-cCCHHHHHHHHHH
Confidence 55555555544321 011 34444444444433 11222 235555555554 2332 122333
Q ss_pred HhcCC-CCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCccccCC-CCCcEEecCCCCCCChh----hHHHhh
Q 003270 233 ATSCP-QLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRL-PMLTVLQLHSCEGITSA----SMAAIS 306 (835)
Q Consensus 233 ~~~~~-~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~-~~L~~L~l~~~~~~~~~----~~~~l~ 306 (835)
+..++ +|++|++++|. +++..+..++. .+..+ ++|++|++++| .+.+. .+..+.
T Consensus 162 l~~~~~~L~~L~Ls~n~-l~~~~~~~l~~------------------~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~ 221 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNN-LASKNCAELAK------------------FLASIPASVTSLDLSAN-LLGLKSYAELAYIFS 221 (362)
T ss_dssp HHTSCTTCCEEECTTSC-GGGSCHHHHHH------------------HHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHH
T ss_pred HhcCCccccEeeecCCC-CchhhHHHHHH------------------HHHhCCCCCCEEECCCC-CCChhHHHHHHHHHh
Confidence 33333 55555555554 44333322221 11122 24444444443 44443 233444
Q ss_pred h-ccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccCccccchhhcchhh
Q 003270 307 H-SYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSNSLQKLSLQKQENL 385 (835)
Q Consensus 307 ~-~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 385 (835)
. .++|++|++++|.+.+..+..+.. .+..+++|+.|++++|.+.+........+
T Consensus 222 ~~~~~L~~L~Ls~N~l~~~~~~~l~~-------------------------~~~~l~~L~~L~L~~n~l~~i~~~~~~~l 276 (362)
T 3goz_A 222 SIPNHVVSLNLCLNCLHGPSLENLKL-------------------------LKDSLKHLQTVYLDYDIVKNMSKEQCKAL 276 (362)
T ss_dssp HSCTTCCEEECCSSCCCCCCHHHHHH-------------------------TTTTTTTCSEEEEEHHHHTTCCHHHHHHH
T ss_pred cCCCCceEEECcCCCCCcHHHHHHHH-------------------------HHhcCCCccEEEeccCCccccCHHHHHHH
Confidence 4 347888888877644322111100 13456677777777777665544444444
Q ss_pred HHHHhhCCcccEEecCCCcCCchhhh
Q 003270 386 TSLALQCQCLQEVDLTDCESLTNSVC 411 (835)
Q Consensus 386 ~~l~~~~~~L~~L~l~~c~~l~~~~~ 411 (835)
......+++|++|++++ +.+.+..+
T Consensus 277 ~~~~~~l~~L~~LdL~~-N~l~~~~~ 301 (362)
T 3goz_A 277 GAAFPNIQKIILVDKNG-KEIHPSHS 301 (362)
T ss_dssp HTTSTTCCEEEEECTTS-CBCCGGGC
T ss_pred HHHhccCCceEEEecCC-CcCCCcch
Confidence 44334566777888877 46766533
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-18 Score=188.70 Aligned_cols=236 Identities=19% Similarity=0.191 Sum_probs=158.2
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
.|..++|.+...+. ++. ...++++.|++++ +.+....+..|..+++|++|++++|.+.+..+.+|.++++|++|+
T Consensus 44 ~~~~v~c~~~~l~~--iP~--~~~~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~ 118 (440)
T 3zyj_A 44 QFSKVICVRKNLRE--VPD--GISTNTRLLNLHE-NQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLE 118 (440)
T ss_dssp TSCEEECCSCCCSS--CCS--CCCTTCSEEECCS-CCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEE
T ss_pred CCCEEEeCCCCcCc--CCC--CCCCCCcEEEccC-CcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEE
Confidence 35667776643221 010 1235788899988 567776667888899999999999988888788888899999999
Q ss_pred ecCCCCCcccccccccCCcccEEeccCccccccc----cCCCCCcEEEecccc-hH----HHhhcCCCCcEEeecCCCCC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRSN-MA----QAVLNCPLLHLLDIASCHKL 224 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~L~~L~l~~~~-i~----~~~~~~~~L~~L~l~~~~~l 224 (835)
+++|.++...+..+..+++|++|++++|.+..+. .++++|++|++++++ +. ..+..+++|++|++++| .+
T Consensus 119 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l 197 (440)
T 3zyj_A 119 LFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NL 197 (440)
T ss_dssp CCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CC
T ss_pred CCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cC
Confidence 9999887666667888888888888888876553 357777788777643 22 35666777777777776 34
Q ss_pred CHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhh
Q 003270 225 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSAS 301 (835)
Q Consensus 225 ~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (835)
+ .++ .+..+++|++|++++|. +++..+..+. .+++|+.|++++|. ..+..+..+++|++|++++| .+....
T Consensus 198 ~--~~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 271 (440)
T 3zyj_A 198 R--EIP-NLTPLIKLDELDLSGNH-LSAIRPGSFQ-GLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHN-NLTLLP 271 (440)
T ss_dssp S--SCC-CCTTCSSCCEEECTTSC-CCEECTTTTT-TCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTS-CCCCCC
T ss_pred c--ccc-ccCCCcccCEEECCCCc-cCccChhhhc-cCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCC-CCCccC
Confidence 4 222 25666777777777776 5544444444 66667777776665 12334556666666666665 555555
Q ss_pred HHHhhhccCccEEEccCCCc
Q 003270 302 MAAISHSYMLEVLELDNCNL 321 (835)
Q Consensus 302 ~~~l~~~~~L~~L~l~~~~~ 321 (835)
+..+..+++|+.|++++|++
T Consensus 272 ~~~~~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 272 HDLFTPLHHLERIHLHHNPW 291 (440)
T ss_dssp TTTTSSCTTCCEEECCSSCE
T ss_pred hhHhccccCCCEEEcCCCCc
Confidence 45555666666666666653
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.5e-18 Score=189.21 Aligned_cols=191 Identities=20% Similarity=0.209 Sum_probs=140.5
Q ss_pred CCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEeccc
Q 003270 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRS 201 (835)
Q Consensus 122 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~ 201 (835)
+++|++|++++|.+++..|..|+.+++|++|++++|.+++..+ +..+++|++|++++|.+..+. ..++|++|++++|
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-~~~~L~~L~L~~N 109 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-VGPSIETLHAANN 109 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-ECTTCCEEECCSS
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-CCCCcCEEECcCC
Confidence 4489999999999998888899999999999999999876555 788899999999999888776 4488999999988
Q ss_pred chHH-HhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCc
Q 003270 202 NMAQ-AVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISL 278 (835)
Q Consensus 202 ~i~~-~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~ 278 (835)
.+.. ....+++|+.|++++| .++. ..+..++++++|++|++++|. +++..+..+...+++|+.|++++|. .+ .
T Consensus 110 ~l~~~~~~~l~~L~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~ 185 (487)
T 3oja_A 110 NISRVSCSRGQGKKNIYLANN-KITM-LRDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNFIYDV-K 185 (487)
T ss_dssp CCCCEEECCCSSCEEEECCSS-CCCS-GGGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSCCCEE-E
T ss_pred cCCCCCccccCCCCEEECCCC-CCCC-CCchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcccEEecCCCccccc-c
Confidence 8762 2345788899999888 4552 234466778888899998888 7766666665567888888888875 12 2
Q ss_pred cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCc
Q 003270 279 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 321 (835)
Q Consensus 279 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 321 (835)
....+++|++|++++| .+.+..+ .+..+++|+.|++++|.+
T Consensus 186 ~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~l~~L~~L~Ls~N~l 226 (487)
T 3oja_A 186 GQVVFAKLKTLDLSSN-KLAFMGP-EFQSAAGVTWISLRNNKL 226 (487)
T ss_dssp CCCCCTTCCEEECCSS-CCCEECG-GGGGGTTCSEEECTTSCC
T ss_pred ccccCCCCCEEECCCC-CCCCCCH-hHcCCCCccEEEecCCcC
Confidence 2334666666666665 4544322 355566666666666654
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-18 Score=189.28 Aligned_cols=235 Identities=20% Similarity=0.175 Sum_probs=151.8
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLN 153 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~ 153 (835)
.|..++|.+...+. ++. ...++++.|++++ +.+....+..|..+++|++|++++|.+.+..+.+|.++++|++|+
T Consensus 55 ~~~~v~c~~~~l~~--iP~--~~~~~l~~L~L~~-n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 129 (452)
T 3zyi_A 55 QFSKVVCTRRGLSE--VPQ--GIPSNTRYLNLME-NNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLE 129 (452)
T ss_dssp SSCEEECCSSCCSS--CCS--CCCTTCSEEECCS-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEE
T ss_pred CCcEEEECCCCcCc--cCC--CCCCCccEEECcC-CcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEE
Confidence 35677776643221 010 1225788888888 567776677788888888888888888887778888888888888
Q ss_pred ecCCCCCcccccccccCCcccEEeccCccccccc----cCCCCCcEEEeccc-chH----HHhhcCCCCcEEeecCCCCC
Q 003270 154 VNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLKRS-NMA----QAVLNCPLLHLLDIASCHKL 224 (835)
Q Consensus 154 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~L~~L~l~~~-~i~----~~~~~~~~L~~L~l~~~~~l 224 (835)
+++|.++...+..+.++++|++|++++|.+..+. .++++|++|+++++ .+. ..+..+++|++|++++| .+
T Consensus 130 L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l 208 (452)
T 3zyi_A 130 LFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NI 208 (452)
T ss_dssp CCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CC
T ss_pred CCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-cc
Confidence 8888887666666778888888888888876543 35677777777763 222 34566677777777776 34
Q ss_pred CHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhh
Q 003270 225 SDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSAS 301 (835)
Q Consensus 225 ~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~ 301 (835)
++ ++ .+..+++|++|++++|. +++..+..+. .+++|+.|++++|. ..+..+..+++|++|++++| .+....
T Consensus 209 ~~--~~-~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~ 282 (452)
T 3zyi_A 209 KD--MP-NLTPLVGLEELEMSGNH-FPEIRPGSFH-GLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLP 282 (452)
T ss_dssp SS--CC-CCTTCTTCCEEECTTSC-CSEECGGGGT-TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCC
T ss_pred cc--cc-cccccccccEEECcCCc-CcccCccccc-CccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccC
Confidence 42 22 34556667777777666 5544444443 56666666666664 12333455566666666665 455444
Q ss_pred HHHhhhccCccEEEccCCC
Q 003270 302 MAAISHSYMLEVLELDNCN 320 (835)
Q Consensus 302 ~~~l~~~~~L~~L~l~~~~ 320 (835)
+..+..+++|++|++++|+
T Consensus 283 ~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 283 HDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTSSTTCTTCCEEECCSSC
T ss_pred hHHhccccCCCEEEccCCC
Confidence 4445555666666666554
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=5.7e-18 Score=187.53 Aligned_cols=240 Identities=15% Similarity=0.133 Sum_probs=182.3
Q ss_pred ccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCcccc
Q 003270 359 SNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVR 438 (835)
Q Consensus 359 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~ 438 (835)
..+++|+.|++++|.+++..+..+. .+++|++|++++ +.+++..+ + ..+++|++|++++|. ++.++
T Consensus 31 ~~~~~L~~L~Ls~n~l~~~~~~~~~-------~l~~L~~L~Ls~-N~l~~~~~--l---~~l~~L~~L~Ls~N~-l~~l~ 96 (487)
T 3oja_A 31 QSAWNVKELDLSGNPLSQISAADLA-------PFTKLELLNLSS-NVLYETLD--L---ESLSTLRTLDLNNNY-VQELL 96 (487)
T ss_dssp TTGGGCCEEECCSSCCCCCCGGGGT-------TCTTCCEEECTT-SCCEEEEE--C---TTCTTCCEEECCSSE-EEEEE
T ss_pred ccCCCccEEEeeCCcCCCCCHHHHh-------CCCCCCEEEeeC-CCCCCCcc--c---ccCCCCCEEEecCCc-CCCCC
Confidence 3456888888888888875443332 457889999988 57876544 3 778889999988875 44332
Q ss_pred ccCCcceEEeccCCcccccccccCCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCccc
Q 003270 439 FCSTSLVSLSLVGCRAITALELKCPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVL 518 (835)
Q Consensus 439 ~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l 518 (835)
..++|+.|++++|.- .. +| ...+++|+.|++++|.++ +..
T Consensus 97 ----------------------~~~~L~~L~L~~N~l-~~---~~-------~~~l~~L~~L~L~~N~l~-------~~~ 136 (487)
T 3oja_A 97 ----------------------VGPSIETLHAANNNI-SR---VS-------CSRGQGKKNIYLANNKIT-------MLR 136 (487)
T ss_dssp ----------------------ECTTCCEEECCSSCC-CC---EE-------ECCCSSCEEEECCSSCCC-------SGG
T ss_pred ----------------------CCCCcCEEECcCCcC-CC---CC-------ccccCCCCEEECCCCCCC-------CCC
Confidence 126677777776532 11 11 234578899999999885 666
Q ss_pred ccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhc
Q 003270 519 SDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFES 598 (835)
Q Consensus 519 ~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~ 598 (835)
|..+..+++|++|++++| .++..........+++|+.|++++|...+. .....+++|+.|++++|.++++|+.+..
T Consensus 137 ~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 212 (487)
T 3oja_A 137 DLDEGCRSRVQYLDLKLN-EIDTVNFAELAASSDTLEHLNLQYNFIYDV---KGQVVFAKLKTLDLSSNKLAFMGPEFQS 212 (487)
T ss_dssp GBCGGGGSSEEEEECTTS-CCCEEEGGGGGGGTTTCCEEECTTSCCCEE---ECCCCCTTCCEEECCSSCCCEECGGGGG
T ss_pred chhhcCCCCCCEEECCCC-CCCCcChHHHhhhCCcccEEecCCCccccc---cccccCCCCCEEECCCCCCCCCCHhHcC
Confidence 778889999999999998 565433333334799999999999986544 2445689999999999999999888999
Q ss_pred cccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEcc
Q 003270 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLN 661 (835)
Q Consensus 599 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~ 661 (835)
+++|+.|++++|. +++. +.. +..+++|+.|++++|.+....++..+..++.|+.+++.
T Consensus 213 l~~L~~L~Ls~N~-l~~l-p~~---l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 213 AAGVTWISLRNNK-LVLI-EKA---LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp GTTCSEEECTTSC-CCEE-CTT---CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccEEEecCCc-Cccc-chh---hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 9999999999998 8764 332 47789999999999999855788889999999988886
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-18 Score=175.66 Aligned_cols=204 Identities=16% Similarity=0.131 Sum_probs=113.9
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCC-CCcccccccccCCcccEE
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L 176 (835)
+++++|++++ +.+....+..|..+++|++|++++|.+++..+.++..+++|++|++++|. +....+..+..+++|++|
T Consensus 32 ~~l~~L~l~~-n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHG-NRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTT-SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeC-CcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 4566666666 34554444455666666666666666665555566666666666666665 433334455555555555
Q ss_pred eccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHH
Q 003270 177 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 256 (835)
Q Consensus 177 ~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~ 256 (835)
++++|.+..+. ...+..+++|++|++++| .++. ..+..++++++|++|++++|. ++.....
T Consensus 111 ~l~~n~l~~~~----------------~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 171 (285)
T 1ozn_A 111 HLDRCGLQELG----------------PGLFRGLAALQYLYLQDN-ALQA-LPDDTFRDLGNLTHLFLHGNR-ISSVPER 171 (285)
T ss_dssp ECTTSCCCCCC----------------TTTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCEECTT
T ss_pred ECCCCcCCEEC----------------HhHhhCCcCCCEEECCCC-cccc-cCHhHhccCCCccEEECCCCc-ccccCHH
Confidence 55555544321 023445555555555555 2331 112234556666666666665 4432222
Q ss_pred HHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 257 EIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 257 ~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
.+. .+++|+.|++++|. ..+..+..+++|++|++++| .+.+..+..+..+++|++|++++|++..
T Consensus 172 ~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 172 AFR-GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp TTT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred Hhc-CccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCCCccC
Confidence 232 55666666666654 22445556677777777775 6666666667777777777777776543
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=179.86 Aligned_cols=127 Identities=21% Similarity=0.065 Sum_probs=68.3
Q ss_pred CCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 494 CPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 494 ~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
+++|+.|++++|.+ ..+|.. .++|+.|++++| .++. ++. .+++|+.|++++|..... +
T Consensus 180 ~~~L~~L~Ls~N~l--------~~l~~~---~~~L~~L~L~~N-~l~~--l~~---~~~~L~~L~Ls~N~L~~l--p--- 237 (622)
T 3g06_A 180 PSGLQELSVSDNQL--------ASLPTL---PSELYKLWAYNN-RLTS--LPA---LPSGLKELIVSGNRLTSL--P--- 237 (622)
T ss_dssp CTTCCEEECCSSCC--------SCCCCC---CTTCCEEECCSS-CCSS--CCC---CCTTCCEEECCSSCCSCC--C---
T ss_pred CCCCcEEECCCCCC--------CCCCCc---cchhhEEECcCC-cccc--cCC---CCCCCCEEEccCCccCcC--C---
Confidence 35555666666655 223322 355666666665 3332 221 235666666666654331 1
Q ss_pred hhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhh
Q 003270 574 RSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAY 651 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~ 651 (835)
..+++|+.|++++|.++.+|. .+++|+.|++++|. ++.. +.. +..+++|+.|++++|.+++ .++..+..
T Consensus 238 ~~l~~L~~L~Ls~N~L~~lp~---~~~~L~~L~Ls~N~-L~~l-p~~---l~~l~~L~~L~L~~N~l~~-~~~~~l~~ 306 (622)
T 3g06_A 238 VLPSELKELMVSGNRLTSLPM---LPSGLLSLSVYRNQ-LTRL-PES---LIHLSSETTVNLEGNPLSE-RTLQALRE 306 (622)
T ss_dssp CCCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC-CCSC-CGG---GGGSCTTCEEECCSCCCCH-HHHHHHHH
T ss_pred CCCCcCcEEECCCCCCCcCCc---ccccCcEEeCCCCC-CCcC-CHH---HhhccccCEEEecCCCCCC-cCHHHHHh
Confidence 344666666666666666555 45566666666665 5533 222 2456666666666666665 34444443
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.6e-18 Score=176.10 Aligned_cols=197 Identities=21% Similarity=0.212 Sum_probs=160.5
Q ss_pred HhhCCcCcEEEcCCcccChhhHHhh--cCCCCCCEEEecCCCCCcccccccccC-----CcccEEeccCccccccc----
Q 003270 119 VSLLRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQEIPINH-----DQLRRLEITKCRVMRVS---- 187 (835)
Q Consensus 119 l~~~~~L~~L~l~~~~i~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~~~l-----~~L~~L~l~~~~~~~~~---- 187 (835)
+..+++|++|++++|.+++.+|..+ +.+++|++|++++|.+++. |..+..+ ++|++|++++|.+..+.
T Consensus 91 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~ 169 (312)
T 1wwl_A 91 VLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQV 169 (312)
T ss_dssp HHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTC
T ss_pred hcCcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHh
Confidence 3478999999999999998888876 8999999999999999876 7777776 89999999999987654
Q ss_pred cCCCCCcEEEecccchH------HHh--hcCCCCcEEeecCCCCCCH-HHHH-HHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 188 IRCPQLEHLSLKRSNMA------QAV--LNCPLLHLLDIASCHKLSD-AAIR-LAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 188 ~~l~~L~~L~l~~~~i~------~~~--~~~~~L~~L~l~~~~~l~~-~~l~-~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
.++++|++|++++|.+. ..+ ..+++|++|++++| .++. ..++ ..+.++++|++|++++|. +++..+..
T Consensus 170 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~ 247 (312)
T 1wwl_A 170 RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAP 247 (312)
T ss_dssp CCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCS
T ss_pred ccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchh
Confidence 46899999999999853 233 78999999999999 4652 1233 455788999999999998 77644322
Q ss_pred HHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 258 IALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 258 ~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
....+++|+.|++++|. .+|..+. ++|++|++++| .+.+. +. +..+++|++|++++|++.+
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~~ip~~~~--~~L~~L~Ls~N-~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLKQVPKGLP--AKLSVLDLSYN-RLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCCCTTCCEEECTTSCCSSCCSSCC--SEEEEEECCSS-CCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred hhhhcCCCCEEECCCCccChhhhhcc--CCceEEECCCC-CCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 22257899999999997 6676666 89999999997 77766 33 8889999999999998654
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-17 Score=167.63 Aligned_cols=205 Identities=15% Similarity=0.090 Sum_probs=128.7
Q ss_pred CeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEec
Q 003270 99 NATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEI 178 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 178 (835)
++++|++++ +.+....+..+..+++|++|++++|.+.+..+.++..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 29 ~l~~L~ls~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 29 STKNLDLSF-NPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TCCEEECTT-CCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CccEEECCC-CcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 466666666 3455444445566666666666666666555555666666666666666665544455555555555555
Q ss_pred cCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHH
Q 003270 179 TKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREI 258 (835)
Q Consensus 179 ~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~ 258 (835)
++|.+..+.. ..++.+++|++|++++| .++...+|..+.++++|++|++++|. +++..+..+
T Consensus 108 ~~n~l~~~~~----------------~~~~~l~~L~~L~l~~n-~l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~ 169 (276)
T 2z62_A 108 VETNLASLEN----------------FPIGHLKTLKELNVAHN-LIQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDL 169 (276)
T ss_dssp TTSCCCCSTT----------------CCCTTCTTCCEEECCSS-CCCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGG
T ss_pred CCCCccccCc----------------hhcccCCCCCEEECcCC-ccceecCchhhccCCCCCEEECCCCC-CCcCCHHHh
Confidence 5554433210 13566777888888777 35433345667888888888888887 664332222
Q ss_pred H--HhCCCCc-EEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 259 A--LSCANLR-ILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 259 ~--~~~~~L~-~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
. ..++.+. .|++++|. .++.......+|++|++++| .+....+..+..+++|++|++++|++..
T Consensus 170 ~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 170 RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp HHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred hhhhhccccceeeecCCCcccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCcccc
Confidence 2 1344443 78888886 44555555668899999887 6776655667788899999999887654
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.7e-16 Score=169.33 Aligned_cols=262 Identities=17% Similarity=0.089 Sum_probs=144.3
Q ss_pred EEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccc----cccccCC-cccEEeccCccccccccCCCCCcEEEeccc
Q 003270 127 ALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQ----EIPINHD-QLRRLEITKCRVMRVSIRCPQLEHLSLKRS 201 (835)
Q Consensus 127 ~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~ 201 (835)
+++++.|.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+......
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~------------ 69 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSD------------ 69 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHH------------
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHH------------
Confidence 46788899999999888888889999999999876555 5566666 777777777766543100
Q ss_pred chHHHhhcC-CCCcEEeecCCCCCCHH---HHHHHHhcC-CCCCEEeCCCCCCCChHHHHHHHHh----CCCCcEEecCC
Q 003270 202 NMAQAVLNC-PLLHLLDIASCHKLSDA---AIRLAATSC-PQLESLDMSNCSCVSDESLREIALS----CANLRILNSSY 272 (835)
Q Consensus 202 ~i~~~~~~~-~~L~~L~l~~~~~l~~~---~l~~~~~~~-~~L~~L~L~~~~~l~~~~~~~~~~~----~~~L~~L~l~~ 272 (835)
.+...+... ++|++|++++| .+++. .+...+..+ ++|++|++++|. +++..+..+... .++|++|++++
T Consensus 70 ~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~ 147 (362)
T 3goz_A 70 ELVQILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRG 147 (362)
T ss_dssp HHHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTT
T ss_pred HHHHHHhccCCCccEEECcCC-cCChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccC
Confidence 001111221 44555555544 23211 122223333 455555555555 444333333211 23455555555
Q ss_pred CCC-------CCccccCCC-CCcEEecCCCCCCChhhHHHhhh----c-cCccEEEccCCCccccccccCcccceeeccc
Q 003270 273 CPN-------ISLESVRLP-MLTVLQLHSCEGITSASMAAISH----S-YMLEVLELDNCNLLTSVSLELPRLQNIRLVH 339 (835)
Q Consensus 273 ~~~-------l~~~~~~~~-~L~~L~l~~~~~~~~~~~~~l~~----~-~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~ 339 (835)
|.- ++..+...+ +|++|++++| .+.+..+..++. + ++|++|++++|.+.+.....++.
T Consensus 148 N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~-------- 218 (362)
T 3goz_A 148 NDLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAY-------- 218 (362)
T ss_dssp SCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHH--------
T ss_pred CcCCHHHHHHHHHHHhcCCccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHH--------
Confidence 430 011112222 5555555555 565555544443 3 58888888888644321110000
Q ss_pred cccccchhhcccccceeeecc-CCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcC---Cchhhhhhcc
Q 003270 340 CRKFADLNLRAMMLSSIMVSN-CAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCES---LTNSVCEVFS 415 (835)
Q Consensus 340 ~~~l~~l~l~~~~l~~~~l~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~---l~~~~~~~~~ 415 (835)
.+.. +++|++|++++|.+++... ..+..+...+++|++|++++| . ++......+.
T Consensus 219 -----------------~l~~~~~~L~~L~Ls~N~l~~~~~---~~l~~~~~~l~~L~~L~L~~n-~l~~i~~~~~~~l~ 277 (362)
T 3goz_A 219 -----------------IFSSIPNHVVSLNLCLNCLHGPSL---ENLKLLKDSLKHLQTVYLDYD-IVKNMSKEQCKALG 277 (362)
T ss_dssp -----------------HHHHSCTTCCEEECCSSCCCCCCH---HHHHHTTTTTTTCSEEEEEHH-HHTTCCHHHHHHHH
T ss_pred -----------------HHhcCCCCceEEECcCCCCCcHHH---HHHHHHHhcCCCccEEEeccC-CccccCHHHHHHHH
Confidence 1223 4578888888888877432 233334446678899999884 5 4433222222
Q ss_pred -CCCCCCCccEEEecCCC
Q 003270 416 -DGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 416 -~~~~~~~L~~L~l~~~~ 432 (835)
.+..+++|+.|+++++.
T Consensus 278 ~~~~~l~~L~~LdL~~N~ 295 (362)
T 3goz_A 278 AAFPNIQKIILVDKNGKE 295 (362)
T ss_dssp TTSTTCCEEEEECTTSCB
T ss_pred HHhccCCceEEEecCCCc
Confidence 23567778888888776
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.66 E-value=7.5e-17 Score=165.62 Aligned_cols=153 Identities=24% Similarity=0.131 Sum_probs=75.7
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++++.++++++.+ ..+|..+ .++++.|++++| .++. ..+..+..+++|++|++++|......
T Consensus 6 ~~~l~~l~~l~~~~~~l--------~~ip~~~--~~~l~~L~L~~N-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~-- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNL--------TALPPDL--PKDTTILHLSEN-LLYT-FSLATLMPYTRLTQLNLDRAELTKLQ-- 71 (290)
T ss_dssp EECSTTCCEEECTTSCC--------SSCCSCC--CTTCCEEECTTS-CCSE-EEGGGGTTCTTCCEEECTTSCCCEEE--
T ss_pred ccccCCccEEECCCCCC--------CcCCCCC--CCCCCEEEcCCC-cCCc-cCHHHhhcCCCCCEEECCCCccCccc--
Confidence 34455555566555555 4444433 245666666665 3332 12334555555666666655533221
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
....+++|++|++++|.+..+|..+..+++|++|++++|+ +++..+..+ ..+++|+.|++++|+++. ..+..|.
T Consensus 72 -~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~l~~N~-l~~l~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~ 145 (290)
T 1p9a_G 72 -VDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNR-LTSLPLGAL---RGLGELQELYLKGNELKT-LPPGLLT 145 (290)
T ss_dssp -CCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSC-CCCCCSSTT---TTCTTCCEEECTTSCCCC-CCTTTTT
T ss_pred -CCCCCCcCCEEECCCCcCCcCchhhccCCCCCEEECCCCc-CcccCHHHH---cCCCCCCEEECCCCCCCc-cChhhcc
Confidence 1245555566666655555555555555555555555555 444332222 444555555555555543 2223344
Q ss_pred hCCCccEEEccCC
Q 003270 651 YCTHLTHVSLNGC 663 (835)
Q Consensus 651 ~~~~L~~L~l~~~ 663 (835)
.+++|++|++++|
T Consensus 146 ~l~~L~~L~L~~N 158 (290)
T 1p9a_G 146 PTPKLEKLSLANN 158 (290)
T ss_dssp TCTTCCEEECTTS
T ss_pred cccCCCEEECCCC
Confidence 4445555555444
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=8.5e-16 Score=157.27 Aligned_cols=110 Identities=17% Similarity=0.064 Sum_probs=45.9
Q ss_pred hcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcccccc----EEecccccccchhhHHHHHh
Q 003270 549 TSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLK----VLKLQACKYLTNTSLESLYK 623 (835)
Q Consensus 549 ~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~----~L~l~~~~~l~~~~~~~l~~ 623 (835)
..+++|++|++++|.......+..+..+++|++|++++|.+++++. .+..+++|+ +|++++|+ +++.....
T Consensus 121 ~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~-l~~~~~~~--- 196 (276)
T 2z62_A 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGA--- 196 (276)
T ss_dssp TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC-CCEECTTS---
T ss_pred ccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc-ccccCccc---
Confidence 3444444444444443221113344444444444444444444322 333333333 44555544 44332221
Q ss_pred cCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 624 KGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 624 ~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
....+|+.|++++|++++ ..+..+..+++|++|++++|+
T Consensus 197 -~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 197 -FKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp -SCSCCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSC
T ss_pred -cCCCcccEEECCCCceee-cCHhHhcccccccEEEccCCc
Confidence 112245555555555443 222334445555555555444
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.63 E-value=6.5e-16 Score=160.91 Aligned_cols=203 Identities=19% Similarity=0.206 Sum_probs=102.1
Q ss_pred CeeEEEccCCcchhhH-HHH--HHhhCCcCcEEEcCCcccChhhHHhh--cCCCCCCEEEecCCCCCcccc----ccccc
Q 003270 99 NATEVNIYGAPAIHLL-VMK--AVSLLRNLEALTLGRGQLGDAFFHAL--ADCSMLKSLNVNDATLGNGVQ----EIPIN 169 (835)
Q Consensus 99 ~l~~L~l~~~~~~~~~-~~~--~l~~~~~L~~L~l~~~~i~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~----~~~~~ 169 (835)
.++.+.+.++ .+.+. +.. .+..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+++..+ ..+..
T Consensus 65 ~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 4566666663 22221 111 12234557777777777766666665 666777777777776665333 12224
Q ss_pred CCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHH--HhcCCCCCEEeCCCC
Q 003270 170 HDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLA--ATSCPQLESLDMSNC 247 (835)
Q Consensus 170 l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~--~~~~~~L~~L~L~~~ 247 (835)
+++|++|++++|.+..+.. ..++.+++|++|++++|....+.+++.. +.++++|++|++++|
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~----------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N 207 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSC----------------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT 207 (310)
T ss_dssp CSCCCEEEEECCSSCCCCT----------------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS
T ss_pred ccCCCEEEeeCCCcchhhH----------------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC
Confidence 5555555555555433221 2334555555555555532221222211 245556666666666
Q ss_pred CCCCh--HHHHHHHHhCCCCcEEecCCCC--C-CCccccCC---CCCcEEecCCCCCCChhhHHHhhhccCccEEEccCC
Q 003270 248 SCVSD--ESLREIALSCANLRILNSSYCP--N-ISLESVRL---PMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319 (835)
Q Consensus 248 ~~l~~--~~~~~~~~~~~~L~~L~l~~~~--~-l~~~~~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 319 (835)
. ++. ..+..+...+++|++|++++|. . .|..++.+ ++|++|++++| .+.. .+..+. ++|++|++++|
T Consensus 208 ~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~-lp~~~~--~~L~~L~Ls~N 282 (310)
T 4glp_A 208 G-METPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQ-VPKGLP--AKLRVLDLSSN 282 (310)
T ss_dssp C-CCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCS-CCSCCC--SCCSCEECCSC
T ss_pred C-CCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCc-hhhhhc--CCCCEEECCCC
Confidence 5 441 2222222355666666666655 2 23444443 46666666665 4442 222222 56666666666
Q ss_pred Cccc
Q 003270 320 NLLT 323 (835)
Q Consensus 320 ~~~~ 323 (835)
.+.+
T Consensus 283 ~l~~ 286 (310)
T 4glp_A 283 RLNR 286 (310)
T ss_dssp CCCS
T ss_pred cCCC
Confidence 6544
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.62 E-value=4.3e-16 Score=155.64 Aligned_cols=156 Identities=19% Similarity=0.149 Sum_probs=102.4
Q ss_pred cCcCCCCccccccc-ceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCcc---EEeccCCCCcC
Q 003270 491 LGICPKLSTLGIEA-LHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIE---SLILMSCQSIG 566 (835)
Q Consensus 491 l~~~~~L~~l~l~~-~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~---~L~l~~~~~~~ 566 (835)
+.++++|+.+++++ |.++ ...+..|.++++|++|++++| .++. ++. +..+++|+ +|++++|+.+.
T Consensus 76 f~~l~~L~~L~l~~~n~l~-------~i~~~~f~~l~~L~~L~l~~n-~l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~ 144 (239)
T 2xwt_C 76 FYNLSKVTHIEIRNTRNLT-------YIDPDALKELPLLKFLGIFNT-GLKM--FPD-LTKVYSTDIFFILEITDNPYMT 144 (239)
T ss_dssp EESCTTCCEEEEEEETTCC-------EECTTSEECCTTCCEEEEEEE-CCCS--CCC-CTTCCBCCSEEEEEEESCTTCC
T ss_pred cCCCcCCcEEECCCCCCee-------EcCHHHhCCCCCCCEEeCCCC-CCcc--ccc-cccccccccccEEECCCCcchh
Confidence 44555666666665 5553 112234666777777777776 3443 444 56666666 77777774444
Q ss_pred chhhHhhhhccccc-eeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCC-CCccEEeCCCcccchHH
Q 003270 567 PDGLYSLRSLQNLT-MLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSL-PALQELDLSYGTLCQSA 644 (835)
Q Consensus 567 ~~~~~~~~~l~~L~-~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~n~~~~~~ 644 (835)
...+..+..+++|+ +|++++|+++.+|......++|++|++++|+.++......+ ..+ ++|+.|++++|+++.
T Consensus 145 ~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~---~~l~~~L~~L~l~~N~l~~-- 219 (239)
T 2xwt_C 145 SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAF---GGVYSGPSLLDVSQTSVTA-- 219 (239)
T ss_dssp EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTT---TTCSBCCSEEECTTCCCCC--
T ss_pred hcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHh---hccccCCcEEECCCCcccc--
Confidence 44345677888888 88888888887776433337888888888854775544443 667 888888888888875
Q ss_pred HHHHHhhCCCccEEEccCCC
Q 003270 645 IEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 645 ~~~~l~~~~~L~~L~l~~~~ 664 (835)
++.. .+++|++|++.++.
T Consensus 220 l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 220 LPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCT--TCTTCSEEECTTC-
T ss_pred CChh--HhccCceeeccCcc
Confidence 3322 57788888888764
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.61 E-value=3e-15 Score=155.89 Aligned_cols=227 Identities=19% Similarity=0.173 Sum_probs=163.4
Q ss_pred CCcCcEEEcCCcccChhhHHh---hcCCCCCCEEEecCCCCCccccccc--ccCCcccEEeccCccccccccCCCCCcEE
Q 003270 122 LRNLEALTLGRGQLGDAFFHA---LADCSMLKSLNVNDATLGNGVQEIP--INHDQLRRLEITKCRVMRVSIRCPQLEHL 196 (835)
Q Consensus 122 ~~~L~~L~l~~~~i~~~~~~~---l~~~~~L~~L~l~~~~~~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~l~~L~~L 196 (835)
...++.+.+.++.+++..... +..+++|++|++++|.+.+..|..+ ..+++|++|++++|.+....
T Consensus 63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~--------- 133 (310)
T 4glp_A 63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGR--------- 133 (310)
T ss_dssp SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTT---------
T ss_pred hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchh---------
Confidence 345788999888887543222 2245779999999999988887766 77788888888777765311
Q ss_pred EecccchH-HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChH-HHH--HHHHhCCCCcEEecCC
Q 003270 197 SLKRSNMA-QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDE-SLR--EIALSCANLRILNSSY 272 (835)
Q Consensus 197 ~l~~~~i~-~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~-~~~--~~~~~~~~L~~L~l~~ 272 (835)
..+. ..+..+++|++|++++|. +.. ..+..++++++|++|++++|. +.+. ... .....+++|++|++++
T Consensus 134 ----~~~~~~~~~~~~~L~~L~Ls~n~-l~~-~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~ 206 (310)
T 4glp_A 134 ----SWLAELQQWLKPGLKVLSIAQAH-SPA-FSCEQVRAFPALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRN 206 (310)
T ss_dssp ----SSHHHHHTTBCSCCCEEEEECCS-SCC-CCTTSCCCCTTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCS
T ss_pred ----hhhHHHHhhhccCCCEEEeeCCC-cch-hhHHHhccCCCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCC
Confidence 0111 234578889999999884 542 224567889999999999998 5543 221 1113788999999999
Q ss_pred CC--CCCcc----ccCCCCCcEEecCCCCCCChhhHHHhhhc---cCccEEEccCCCccccccccCcccceeeccccccc
Q 003270 273 CP--NISLE----SVRLPMLTVLQLHSCEGITSASMAAISHS---YMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKF 343 (835)
Q Consensus 273 ~~--~l~~~----~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l 343 (835)
|. .++.. +..+++|++|++++| .+.+..+..+..+ ++|++|++++|.+. .+|..++ ++|
T Consensus 207 N~l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~----------~~L 274 (310)
T 4glp_A 207 TGMETPTGVCAALAAAGVQPHSLDLSHN-SLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP----------AKL 274 (310)
T ss_dssp SCCCCHHHHHHHHHHHTCCCSSEECTTS-CCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC----------SCC
T ss_pred CCCCchHHHHHHHHhcCCCCCEEECCCC-CCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc----------CCC
Confidence 97 22332 357899999999998 7777666666666 69999999999876 5565432 355
Q ss_pred cchhhccccccee-eeccCCCcceeeeccCcccc
Q 003270 344 ADLNLRAMMLSSI-MVSNCAALHRINITSNSLQK 376 (835)
Q Consensus 344 ~~l~l~~~~l~~~-~l~~~~~L~~L~l~~n~l~~ 376 (835)
+.+++++|.++++ .+..+++|+.|++++|.+++
T Consensus 275 ~~L~Ls~N~l~~~~~~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 275 RVLDLSSNRLNRAPQPDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp SCEECCSCCCCSCCCTTSCCCCSCEECSSTTTSC
T ss_pred CEEECCCCcCCCCchhhhCCCccEEECcCCCCCC
Confidence 6667777777764 56788999999999999875
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-15 Score=155.61 Aligned_cols=187 Identities=22% Similarity=0.322 Sum_probs=105.8
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
+++++|+++++ .+... +.+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++ ++ .+..+++|++|+
T Consensus 41 ~~L~~L~l~~~-~i~~l--~~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~ 113 (308)
T 1h6u_A 41 DGITTLSAFGT-GVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLD 113 (308)
T ss_dssp HTCCEEECTTS-CCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEE
T ss_pred CCcCEEEeeCC-CccCc--hhhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEE
Confidence 46667777663 34432 246666667777776666665433 6666666666666666543 22 344455555555
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+ ..+..+++|++|++++| .+++ ++. +..+++|++|++++|. +++..+
T Consensus 114 l~~n~l~~~------------------~~l~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~-- 168 (308)
T 1h6u_A 114 LTSTQITDV------------------TPLAGLSNLQVLYLDLN-QITN--ISP-LAGLTNLQYLSIGNAQ-VSDLTP-- 168 (308)
T ss_dssp CTTSCCCCC------------------GGGTTCTTCCEEECCSS-CCCC--CGG-GGGCTTCCEEECCSSC-CCCCGG--
T ss_pred CCCCCCCCc------------------hhhcCCCCCCEEECCCC-ccCc--Ccc-ccCCCCccEEEccCCc-CCCChh--
Confidence 555544332 23555666666666665 3432 121 5566666666666665 443222
Q ss_pred HHHhCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCc
Q 003270 258 IALSCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 321 (835)
Q Consensus 258 ~~~~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 321 (835)
+. .+++|+.|++++|. .++. +..+++|++|++++| .+.+.. .+..+++|++|++++|.+
T Consensus 169 l~-~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~~N-~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 169 LA-NLSKLTTLKADDNKISDISP-LASLPNLIEVHLKNN-QISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GT-TCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECTTS-CCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred hc-CCCCCCEEECCCCccCcChh-hcCCCCCCEEEccCC-ccCccc--cccCCCCCCEEEccCCee
Confidence 22 56666666666664 2222 455666666666665 455443 366677777777777764
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.2e-14 Score=150.89 Aligned_cols=125 Identities=24% Similarity=0.284 Sum_probs=62.4
Q ss_pred ccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccc
Q 003270 523 INCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQL 602 (835)
Q Consensus 523 ~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L 602 (835)
..+++|++|++++| .+++ ++. +..+++|++|++++|..... ..+..+++|+.|++++|.+++++. +..+++|
T Consensus 104 ~~l~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L 175 (308)
T 1h6u_A 104 AGLQSIKTLDLTST-QITD--VTP-LAGLSNLQVLYLDLNQITNI---SPLAGLTNLQYLSIGNAQVSDLTP-LANLSKL 175 (308)
T ss_dssp TTCTTCCEEECTTS-CCCC--CGG-GTTCTTCCEEECCSSCCCCC---GGGGGCTTCCEEECCSSCCCCCGG-GTTCTTC
T ss_pred cCCCCCCEEECCCC-CCCC--chh-hcCCCCCCEEECCCCccCcC---ccccCCCCccEEEccCCcCCCChh-hcCCCCC
Confidence 33444455555544 2322 221 44455555555555543322 125555555555555555555544 5555556
Q ss_pred cEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 603 KVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 603 ~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+.|++++|. +++..+ +..+++|+.|++++|++++. . .+..+++|++|++++|+
T Consensus 176 ~~L~l~~n~-l~~~~~-----l~~l~~L~~L~L~~N~l~~~-~--~l~~l~~L~~L~l~~N~ 228 (308)
T 1h6u_A 176 TTLKADDNK-ISDISP-----LASLPNLIEVHLKNNQISDV-S--PLANTSNLFIVTLTNQT 228 (308)
T ss_dssp CEEECCSSC-CCCCGG-----GGGCTTCCEEECTTSCCCBC-G--GGTTCTTCCEEEEEEEE
T ss_pred CEEECCCCc-cCcChh-----hcCCCCCCEEEccCCccCcc-c--cccCCCCCCEEEccCCe
Confidence 666665555 444332 24455566666666655542 1 24555666666666554
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.59 E-value=4.1e-15 Score=151.44 Aligned_cols=158 Identities=22% Similarity=0.176 Sum_probs=94.3
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccc-cccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDG 569 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~-~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 569 (835)
+.++++|+.|++++|.+ ..++ ..+..+++|++|++++| .+.. ..+..+..+++|++|++++|..... .
T Consensus 57 ~~~l~~L~~L~l~~n~l--------~~i~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~ 125 (270)
T 2o6q_A 57 FHRLTKLRLLYLNDNKL--------QTLPAGIFKELKNLETLWVTDN-KLQA-LPIGVFDQLVNLAELRLDRNQLKSL-P 125 (270)
T ss_dssp SSSCTTCCEEECCSSCC--------SCCCTTTTSSCTTCCEEECCSS-CCCC-CCTTTTTTCSSCCEEECCSSCCCCC-C
T ss_pred hcCCCCCCEEECCCCcc--------CeeChhhhcCCCCCCEEECCCC-cCCc-CCHhHcccccCCCEEECCCCccCee-C
Confidence 34445555555555544 2222 23455666666666665 3332 1223345666666666666664432 2
Q ss_pred hHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHH
Q 003270 570 LYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEEL 648 (835)
Q Consensus 570 ~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~ 648 (835)
+..+..+++|++|++++|.+.+++. .+..+++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~ 200 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQ-LKRVPEGAF---DKLTELKTLKLDNNQLKR-VPEGA 200 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTT
T ss_pred HHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCc-CcEeChhHh---ccCCCcCEEECCCCcCCc-CCHHH
Confidence 4456677777777777777776655 46677777777777776 665544332 566777777777777765 33344
Q ss_pred HhhCCCccEEEccCCC
Q 003270 649 LAYCTHLTHVSLNGCG 664 (835)
Q Consensus 649 l~~~~~L~~L~l~~~~ 664 (835)
+..+++|++|++++|+
T Consensus 201 ~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 201 FDSLEKLKMLQLQENP 216 (270)
T ss_dssp TTTCTTCCEEECCSSC
T ss_pred hccccCCCEEEecCCC
Confidence 6667777777777776
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-14 Score=148.45 Aligned_cols=137 Identities=20% Similarity=0.115 Sum_probs=95.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|.++ +..+..+..+++|++|++++| .++. ..+..+..+++|++|++++|..... ..
T Consensus 81 ~~~l~~L~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~ 150 (270)
T 2o6q_A 81 FKELKNLETLWVTDNKLQ-------ALPIGVFDQLVNLAELRLDRN-QLKS-LPPRVFDSLTKLTYLSLGYNELQSL-PK 150 (270)
T ss_dssp TSSCTTCCEEECCSSCCC-------CCCTTTTTTCSSCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CT
T ss_pred hcCCCCCCEEECCCCcCC-------cCCHhHcccccCCCEEECCCC-ccCe-eCHHHhCcCcCCCEEECCCCcCCcc-CH
Confidence 455666667777766663 222344667778888888877 3432 2234466778888888888875433 24
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
..+..+++|++|++++|.+++++. .|..+++|++|++++|+ +++..... +..+++|+.|++++|.+.
T Consensus 151 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~ 218 (270)
T 2o6q_A 151 GVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGA---FDSLEKLKMLQLQENPWD 218 (270)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSSCBC
T ss_pred hHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCc-CCcCCHHH---hccccCCCEEEecCCCee
Confidence 457788888888888888888765 57788888888888887 77654443 366788888888888764
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.2e-14 Score=149.24 Aligned_cols=61 Identities=21% Similarity=0.167 Sum_probs=38.6
Q ss_pred eccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCC
Q 003270 358 VSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCE 432 (835)
Q Consensus 358 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~ 432 (835)
+.++++++.++++++.++..... ..+.++.|++++ +.+++..+..+ ..+++|++|+++++.
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~----------~~~~l~~L~L~~-N~l~~~~~~~~---~~l~~L~~L~L~~n~ 66 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPD----------LPKDTTILHLSE-NLLYTFSLATL---MPYTRLTQLNLDRAE 66 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSC----------CCTTCCEEECTT-SCCSEEEGGGG---TTCTTCCEEECTTSC
T ss_pred ccccCCccEEECCCCCCCcCCCC----------CCCCCCEEEcCC-CcCCccCHHHh---hcCCCCCEEECCCCc
Confidence 55666777777777766654211 124677777777 46766655555 566777777777664
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-15 Score=155.84 Aligned_cols=203 Identities=16% Similarity=0.096 Sum_probs=112.5
Q ss_pred CCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEE
Q 003270 97 YPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRL 176 (835)
Q Consensus 97 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 176 (835)
++++++|+++++ .+... +.+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+.++++|++|
T Consensus 40 l~~L~~L~l~~~-~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 40 LNSIDQIIANNS-DIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HTTCCEEECTTS-CCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred ccceeeeeeCCC-Ccccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 356777777773 44432 3467777777777777777653 366777777777777777766555556666666666
Q ss_pred eccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHH
Q 003270 177 EITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLR 256 (835)
Q Consensus 177 ~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~ 256 (835)
++++|.+..+.. ..+..+++|++|++++| .++. ..+..+.++++|++|++++|. +++..+.
T Consensus 115 ~L~~n~l~~~~~----------------~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~ 175 (272)
T 3rfs_A 115 VLVENQLQSLPD----------------GVFDKLTNLTYLNLAHN-QLQS-LPKGVFDKLTNLTELDLSYNQ-LQSLPEG 175 (272)
T ss_dssp ECTTSCCCCCCT----------------TTTTTCTTCCEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTT
T ss_pred ECCCCcCCccCH----------------HHhccCCCCCEEECCCC-ccCc-cCHHHhccCccCCEEECCCCC-cCccCHH
Confidence 666666543321 12344555555555555 2331 112223455566666666655 4432222
Q ss_pred HHHHhCCCCcEEecCCCC--CCCc-cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCccc
Q 003270 257 EIALSCANLRILNSSYCP--NISL-ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRL 332 (835)
Q Consensus 257 ~~~~~~~~L~~L~l~~~~--~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L 332 (835)
.+. .+++|+.|++++|. .++. .+..+++|++|++++| .+. +.+++|+.+++..|.+.|.+|..+..+
T Consensus 176 ~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~ 245 (272)
T 3rfs_A 176 VFD-KLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN-PWD-------CTCPGIRYLSEWINKHSGVVRNSAGSV 245 (272)
T ss_dssp TTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCB
T ss_pred Hhc-CCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC-Ccc-------ccCcHHHHHHHHHHhCCCcccCccccc
Confidence 222 45555555555554 2222 2345566666666554 222 224456666666666666666555443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.57 E-value=8.9e-16 Score=153.29 Aligned_cols=190 Identities=13% Similarity=0.103 Sum_probs=91.9
Q ss_pred cCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCC-CCcccccccccCCcccEEeccC-ccccccc----cCCCCCcEEE
Q 003270 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-LGNGVQEIPINHDQLRRLEITK-CRVMRVS----IRCPQLEHLS 197 (835)
Q Consensus 124 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~----~~l~~L~~L~ 197 (835)
+|++|++++|.+++..+.+|+.+++|++|++++|. ++...+..+.++++|++|++++ |.+..+. .++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 45555555555554444455555555555555554 4332223444445555555544 4443322 1233333333
Q ss_pred ecccchH--HHhhcCCCCc---EEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCc-EEecC
Q 003270 198 LKRSNMA--QAVLNCPLLH---LLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLR-ILNSS 271 (835)
Q Consensus 198 l~~~~i~--~~~~~~~~L~---~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~-~L~l~ 271 (835)
+++|.+. ..+..+++|+ +|++++|.. ++......+. .+++|+ .|+++
T Consensus 112 l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~~--------------------------l~~i~~~~~~-~l~~L~~~L~l~ 164 (239)
T 2xwt_C 112 IFNTGLKMFPDLTKVYSTDIFFILEITDNPY--------------------------MTSIPVNAFQ-GLCNETLTLKLY 164 (239)
T ss_dssp EEEECCCSCCCCTTCCBCCSEEEEEEESCTT--------------------------CCEECTTTTT-TTBSSEEEEECC
T ss_pred CCCCCCccccccccccccccccEEECCCCcc--------------------------hhhcCccccc-chhcceeEEEcC
Confidence 3333322 0123333444 555555422 3222111122 444455 55554
Q ss_pred CCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhhc-cCccEEEccCCCccccccccCcccceeecccc
Q 003270 272 YCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISHS-YMLEVLELDNCNLLTSVSLELPRLQNIRLVHC 340 (835)
Q Consensus 272 ~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~ 340 (835)
+|. .++......++|++|++++|..+....+..+..+ ++|++|++++|.+.+..+..+++++.|.+.++
T Consensus 165 ~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 165 NNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp SCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 443 2333333335666666666533555555566777 78888888887765433334666666665544
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.57 E-value=2.2e-15 Score=153.52 Aligned_cols=176 Identities=13% Similarity=0.116 Sum_probs=90.5
Q ss_pred HhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEe
Q 003270 119 VSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSL 198 (835)
Q Consensus 119 l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l 198 (835)
+..+++|+.|++++|.+... ..++.+++|++|++++|.+++ ++ .+..+++|++|++++|.+..+.
T Consensus 37 ~~~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L~L~~n~l~~~~----------- 101 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-IS-ALKELTNLTYLILTGNQLQSLP----------- 101 (272)
T ss_dssp HHHHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-CG-GGTTCTTCCEEECTTSCCCCCC-----------
T ss_pred cccccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-ch-hhcCCCCCCEEECCCCccCccC-----------
Confidence 34566777777777766642 346667777777777776654 22 3444455555555544443221
Q ss_pred cccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CC
Q 003270 199 KRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NI 276 (835)
Q Consensus 199 ~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l 276 (835)
...+..+++|++|++++| .++. ..+..+.++++|++|++++|. +++..+..+. .+++|+.|++++|. .+
T Consensus 102 -----~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 172 (272)
T 3rfs_A 102 -----NGVFDKLTNLKELVLVEN-QLQS-LPDGVFDKLTNLTYLNLAHNQ-LQSLPKGVFD-KLTNLTELDLSYNQLQSL 172 (272)
T ss_dssp -----TTTTTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCCCC
T ss_pred -----hhHhcCCcCCCEEECCCC-cCCc-cCHHHhccCCCCCEEECCCCc-cCccCHHHhc-cCccCCEEECCCCCcCcc
Confidence 023456666777777766 3441 112335667777777777776 5532222222 45556666665554 22
Q ss_pred Ccc-ccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCC
Q 003270 277 SLE-SVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319 (835)
Q Consensus 277 ~~~-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 319 (835)
+.. +..+++|++|++++| .+.+..+..+..+++|++|++++|
T Consensus 173 ~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 173 PEGVFDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp CTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CHHHhcCCccCCEEECCCC-cCCccCHHHHhCCcCCCEEEccCC
Confidence 221 234444444444443 333333333344444444444444
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.49 E-value=3.5e-14 Score=142.76 Aligned_cols=156 Identities=21% Similarity=0.212 Sum_probs=115.9
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
+.++.|++++|.+. +..+..+..+++|++|++++| .+.. ..+..+..+++|++|++++|..... .+..+.
T Consensus 35 ~~l~~L~L~~n~l~-------~~~~~~~~~l~~L~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~ 104 (251)
T 3m19_A 35 ADTEKLDLQSTGLA-------TLSDATFRGLTKLTWLNLDYN-QLQT-LSAGVFDDLTELGTLGLANNQLASL-PLGVFD 104 (251)
T ss_dssp TTCCEEECTTSCCC-------CCCTTTTTTCTTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECTTSCCCCC-CTTTTT
T ss_pred CCCCEEEccCCCcC-------ccCHhHhcCcccCCEEECCCC-cCCc-cCHhHhccCCcCCEEECCCCccccc-ChhHhc
Confidence 46777777777774 444556778888888888887 4543 2344567788888888888875543 245677
Q ss_pred hccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC
Q 003270 575 SLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 653 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 653 (835)
.+++|++|++++|.+++++. .+..+++|++|++++|. +++..+..+ +.+++|+.|++++|+++. ..+..+..++
T Consensus 105 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~ 179 (251)
T 3m19_A 105 HLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQ-LQSIPAGAF---DKLTNLQTLSLSTNQLQS-VPHGAFDRLG 179 (251)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCT
T ss_pred ccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCc-CCccCHHHc---CcCcCCCEEECCCCcCCc-cCHHHHhCCC
Confidence 88888888888888888766 46788888888888887 776655433 678888888888888876 3445677888
Q ss_pred CccEEEccCCCC
Q 003270 654 HLTHVSLNGCGN 665 (835)
Q Consensus 654 ~L~~L~l~~~~~ 665 (835)
+|++|++++|+-
T Consensus 180 ~L~~L~l~~N~~ 191 (251)
T 3m19_A 180 KLQTITLFGNQF 191 (251)
T ss_dssp TCCEEECCSCCB
T ss_pred CCCEEEeeCCce
Confidence 888888888863
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.4e-13 Score=141.40 Aligned_cols=167 Identities=21% Similarity=0.207 Sum_probs=135.5
Q ss_pred CCCCcEEecCCCCCccccccccccccccccCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCcc
Q 003270 462 CPILEKVCLDGCDHIESASFVPVALQSLNLGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKD 541 (835)
Q Consensus 462 ~~~L~~l~l~~~~~l~~~~~~p~~L~~L~l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~ 541 (835)
+++|+.+++++|. +... + .+..+++|+.|++++|.+ ..++. +..+++|++|++++| .+++
T Consensus 45 l~~L~~L~l~~~~-i~~~---~------~~~~l~~L~~L~L~~n~l--------~~~~~-l~~l~~L~~L~l~~n-~l~~ 104 (291)
T 1h6t_A 45 LNSIDQIIANNSD-IKSV---Q------GIQYLPNVTKLFLNGNKL--------TDIKP-LANLKNLGWLFLDEN-KVKD 104 (291)
T ss_dssp HHTCCEEECTTSC-CCCC---T------TGGGCTTCCEEECCSSCC--------CCCGG-GTTCTTCCEEECCSS-CCCC
T ss_pred cCcccEEEccCCC-cccC---h------hHhcCCCCCEEEccCCcc--------CCCcc-cccCCCCCEEECCCC-cCCC
Confidence 4566777777653 2222 2 167789999999999988 44444 889999999999998 5654
Q ss_pred chhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHH
Q 003270 542 DCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESL 621 (835)
Q Consensus 542 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l 621 (835)
++. +..+++|++|++++|..... ..+..+++|+.|++++|.++++ ..+..+++|+.|++++|. +++..+
T Consensus 105 --~~~-l~~l~~L~~L~L~~n~i~~~---~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~-l~~~~~--- 173 (291)
T 1h6t_A 105 --LSS-LKDLKKLKSLSLEHNGISDI---NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP--- 173 (291)
T ss_dssp --GGG-GTTCTTCCEEECTTSCCCCC---GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSC-CCCCGG---
T ss_pred --Chh-hccCCCCCEEECCCCcCCCC---hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCc-cccchh---
Confidence 443 88999999999999986553 5788999999999999999988 578899999999999998 887654
Q ss_pred HhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 622 YKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 622 ~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+..+++|+.|++++|.+++ ++ .+..+++|+.|++++|+
T Consensus 174 --l~~l~~L~~L~L~~N~i~~--l~-~l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 174 --LAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLELFSQE 211 (291)
T ss_dssp --GTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEEEEEE
T ss_pred --hcCCCccCEEECCCCcCCC--Ch-hhccCCCCCEEECcCCc
Confidence 3789999999999999987 33 38889999999999986
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1.1e-13 Score=139.08 Aligned_cols=151 Identities=21% Similarity=0.127 Sum_probs=111.7
Q ss_pred CCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRS 575 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 575 (835)
..+.++.+++.+ ..+|..+. ++++.|++++| .+.. ..+..+..+++|++|++++|..... .+..+..
T Consensus 15 ~~~~l~~~~~~l--------~~~p~~~~--~~l~~L~L~~n-~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~ 81 (251)
T 3m19_A 15 GKKEVDCQGKSL--------DSVPSGIP--ADTEKLDLQST-GLAT-LSDATFRGLTKLTWLNLDYNQLQTL-SAGVFDD 81 (251)
T ss_dssp GGTEEECTTCCC--------SSCCSCCC--TTCCEEECTTS-CCCC-CCTTTTTTCTTCCEEECTTSCCCCC-CTTTTTT
T ss_pred CCeEEecCCCCc--------cccCCCCC--CCCCEEEccCC-CcCc-cCHhHhcCcccCCEEECCCCcCCcc-CHhHhcc
Confidence 345556666655 55665543 68899999998 4543 2344577888999999999875543 3556888
Q ss_pred ccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCC
Q 003270 576 LQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH 654 (835)
Q Consensus 576 l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~ 654 (835)
+++|++|++++|.+++++. .+..+++|++|++++|. +++.....+ ..+++|+.|++++|++++ ..+..|..+++
T Consensus 82 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~Ls~N~l~~-~~~~~~~~l~~ 156 (251)
T 3m19_A 82 LTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQ-LKSLPSGVF---DRLTKLKELRLNTNQLQS-IPAGAFDKLTN 156 (251)
T ss_dssp CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCCC-CCTTTTTTCTT
T ss_pred CCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCc-CCCcChhHh---ccCCcccEEECcCCcCCc-cCHHHcCcCcC
Confidence 8999999999999888765 67888899999999887 776654433 678889999999888876 34456778888
Q ss_pred ccEEEccCCC
Q 003270 655 LTHVSLNGCG 664 (835)
Q Consensus 655 L~~L~l~~~~ 664 (835)
|++|++++|.
T Consensus 157 L~~L~L~~N~ 166 (251)
T 3m19_A 157 LQTLSLSTNQ 166 (251)
T ss_dssp CCEEECCSSC
T ss_pred CCEEECCCCc
Confidence 8888888875
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.44 E-value=2.8e-13 Score=139.06 Aligned_cols=169 Identities=22% Similarity=0.219 Sum_probs=81.1
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecc
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKR 200 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~ 200 (835)
.+++|+.|++++|.+.+. ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+..+.
T Consensus 44 ~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~------------- 106 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS------------- 106 (291)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG-------------
T ss_pred hcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh-------------
Confidence 345555555555555432 234555555555555555543222 444555555555554443321
Q ss_pred cchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCc
Q 003270 201 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISL 278 (835)
Q Consensus 201 ~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~ 278 (835)
.+..+++|++|++++| .+++ + ..+..+++|++|++++|. +++. ..+. .+++|+.|++++|. .++.
T Consensus 107 -----~l~~l~~L~~L~L~~n-~i~~--~-~~l~~l~~L~~L~l~~n~-l~~~--~~l~-~l~~L~~L~L~~N~l~~~~~ 173 (291)
T 1h6t_A 107 -----SLKDLKKLKSLSLEHN-GISD--I-NGLVHLPQLESLYLGNNK-ITDI--TVLS-RLTKLDTLSLEDNQISDIVP 173 (291)
T ss_dssp -----GGTTCTTCCEEECTTS-CCCC--C-GGGGGCTTCCEEECCSSC-CCCC--GGGG-GCTTCSEEECCSSCCCCCGG
T ss_pred -----hhccCCCCCEEECCCC-cCCC--C-hhhcCCCCCCEEEccCCc-CCcc--hhhc-cCCCCCEEEccCCccccchh
Confidence 1333334444444443 2221 1 123344444444444444 3322 1122 44444444444443 2222
Q ss_pred cccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 279 ESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 279 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
+..+++|++|++++| .+.+. ..+..+++|+.|++++|.+..
T Consensus 174 -l~~l~~L~~L~L~~N-~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 174 -LAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp -GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred -hcCCCccCEEECCCC-cCCCC--hhhccCCCCCEEECcCCcccC
Confidence 445556666666655 45543 347778888888888887544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.6e-13 Score=132.06 Aligned_cols=152 Identities=13% Similarity=0.166 Sum_probs=117.5
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
...+++|+.+++++|.+ ..+| .+..+++|++|++++| .+.+ + ..+..+++|++|++++|..... .+
T Consensus 40 ~~~l~~L~~L~l~~n~i--------~~l~-~l~~l~~L~~L~l~~n-~~~~--~-~~l~~l~~L~~L~l~~n~l~~~-~~ 105 (197)
T 4ezg_A 40 EAQMNSLTYITLANINV--------TDLT-GIEYAHNIKDLTINNI-HATN--Y-NPISGLSNLERLRIMGKDVTSD-KI 105 (197)
T ss_dssp HHHHHTCCEEEEESSCC--------SCCT-TGGGCTTCSEEEEESC-CCSC--C-GGGTTCTTCCEEEEECTTCBGG-GS
T ss_pred hhhcCCccEEeccCCCc--------cChH-HHhcCCCCCEEEccCC-CCCc--c-hhhhcCCCCCEEEeECCccCcc-cC
Confidence 45667788888888877 5555 5778889999999988 4543 2 3577889999999999875542 36
Q ss_pred HhhhhccccceeeecCccccC-chHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+++|++|++++|.+++ .+..+..+++|++|++++|+.+++.. . +..+++|+.|++++|++++ ++ .+
T Consensus 106 ~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~---l~~l~~L~~L~l~~n~i~~--~~-~l 177 (197)
T 4ezg_A 106 PNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM--P---LKTLPELKSLNIQFDGVHD--YR-GI 177 (197)
T ss_dssp CCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--G---GGGCSSCCEEECTTBCCCC--CT-TG
T ss_pred hhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH--h---hcCCCCCCEEECCCCCCcC--hH-Hh
Confidence 678888999999999999886 56678889999999999987566542 2 3678899999999998876 22 57
Q ss_pred hhCCCccEEEccCCC
Q 003270 650 AYCTHLTHVSLNGCG 664 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~ 664 (835)
..+++|++|++++|+
T Consensus 178 ~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 178 EDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGCSSCCEEEECBC-
T ss_pred ccCCCCCEEEeeCcc
Confidence 788999999999886
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.42 E-value=8.2e-14 Score=147.58 Aligned_cols=161 Identities=17% Similarity=0.119 Sum_probs=108.1
Q ss_pred CCCcccccccceeEEEeecCCccccc-ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSD-AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~-~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
++++.|++++|++ ..+|. .|.++++|++|+|++|. +.+..-+..+.++++++++...++..+....+..|
T Consensus 30 ~~l~~L~Ls~N~i--------~~i~~~~f~~l~~L~~L~Ls~N~-i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f 100 (350)
T 4ay9_X 30 RNAIELRFVLTKL--------RVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF 100 (350)
T ss_dssp TTCSEEEEESCCC--------SEECTTSSTTCTTCCEEEEECCT-TCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSB
T ss_pred CCCCEEEccCCcC--------CCcCHHHHcCCCCCCEEECcCCC-CCCccChhHhhcchhhhhhhcccCCcccccCchhh
Confidence 4567777888877 44553 57888889999998884 32211123466788877765555444555446678
Q ss_pred hhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCC-CCccEEeCCCcccchHHHHHHHhh
Q 003270 574 RSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSL-PALQELDLSYGTLCQSAIEELLAY 651 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~n~~~~~~~~~~l~~ 651 (835)
..+++|++|++++|.+..++. .+....++..+++.++..++......+ ..+ ..++.|++++|+++. ++.....
T Consensus 101 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f---~~~~~~l~~L~L~~N~i~~--i~~~~f~ 175 (350)
T 4ay9_X 101 QNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF---VGLSFESVILWLNKNGIQE--IHNSAFN 175 (350)
T ss_dssp CCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS---TTSBSSCEEEECCSSCCCE--ECTTSST
T ss_pred hhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch---hhcchhhhhhccccccccC--CChhhcc
Confidence 888899999999998887665 555667788888877665765544432 333 468888888888875 3333334
Q ss_pred CCCccEEEccCCCCCccc
Q 003270 652 CTHLTHVSLNGCGNMHDL 669 (835)
Q Consensus 652 ~~~L~~L~l~~~~~~~~~ 669 (835)
.++|+++++.+|..+..+
T Consensus 176 ~~~L~~l~l~~~n~l~~i 193 (350)
T 4ay9_X 176 GTQLDELNLSDNNNLEEL 193 (350)
T ss_dssp TEEEEEEECTTCTTCCCC
T ss_pred ccchhHHhhccCCcccCC
Confidence 567888888876655544
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.6e-13 Score=152.87 Aligned_cols=188 Identities=14% Similarity=0.126 Sum_probs=113.9
Q ss_pred CCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEe
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLE 177 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~ 177 (835)
.+++.|++++ +.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+
T Consensus 59 ~~L~~L~Ls~-n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~ 126 (571)
T 3cvr_A 59 NQFSELQLNR-LNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD 126 (571)
T ss_dssp TTCSEEECCS-SCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred CCccEEEeCC-CCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence 4788888888 35554 33333 367888888888887 455 457788888888888866 666 433 788888
Q ss_pred ccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHH
Q 003270 178 ITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLRE 257 (835)
Q Consensus 178 l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~ 257 (835)
+++|.+..+...+++|++|++++|.+...-..+++|++|++++| .++. +|. +. ++|++|++++|. ++. .+.
T Consensus 127 Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N-~L~~--lp~-l~--~~L~~L~Ls~N~-L~~-lp~- 197 (571)
T 3cvr_A 127 VDNNQLTMLPELPALLEYINADNNQLTMLPELPTSLEVLSVRNN-QLTF--LPE-LP--ESLEALDVSTNL-LES-LPA- 197 (571)
T ss_dssp CCSSCCSCCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS-CCSC--CCC-CC--TTCCEEECCSSC-CSS-CCC-
T ss_pred CCCCcCCCCCCcCccccEEeCCCCccCcCCCcCCCcCEEECCCC-CCCC--cch-hh--CCCCEEECcCCC-CCc-hhh-
Confidence 88888776655667777777777766533234567777777776 3442 343 33 667777777766 441 111
Q ss_pred HHH----hCCCCcEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhhHHHhhh
Q 003270 258 IAL----SCANLRILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSASMAAISH 307 (835)
Q Consensus 258 ~~~----~~~~L~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 307 (835)
+.. ..+.|+.|++++|. .+|..++.+++|+.|++++| .+.+..+..+..
T Consensus 198 ~~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~~l~~L~~L~L~~N-~l~~~~p~~l~~ 252 (571)
T 3cvr_A 198 VPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDN-PLSSRIRESLSQ 252 (571)
T ss_dssp CC--------CCEEEECCSSCCCCCCGGGGGSCTTEEEECCSS-SCCHHHHHHHHH
T ss_pred HHHhhhcccccceEEecCCCcceecCHHHhcCCCCCEEEeeCC-cCCCcCHHHHHH
Confidence 110 11122666666654 45555555555555555554 455555544444
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=153.00 Aligned_cols=186 Identities=16% Similarity=0.141 Sum_probs=149.2
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCC-CCcEEEeccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCP-QLEHLSLKRS 201 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~-~L~~L~l~~~ 201 (835)
.+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|++++|.+..+.. +. +|++|++++|
T Consensus 59 ~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N 130 (571)
T 3cvr_A 59 NQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNN 130 (571)
T ss_dssp TTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSS
T ss_pred CCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCC
Confidence 489999999999987 66655 488999999999997 566 567999999999999987765 44 9999999999
Q ss_pred chHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--CCCcc
Q 003270 202 NMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP--NISLE 279 (835)
Q Consensus 202 ~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~ 279 (835)
.++.....+++|+.|++++| .++. +|. .+++|++|++++|. +++ .+. + . ++|+.|++++|. .+|.
T Consensus 131 ~l~~lp~~l~~L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~-L~~-lp~-l--~-~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 131 QLTMLPELPALLEYINADNN-QLTM--LPE---LPTSLEVLSVRNNQ-LTF-LPE-L--P-ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp CCSCCCCCCTTCCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC-CSC-CCC-C--C-TTCCEEECCSSCCSSCCC-
T ss_pred cCCCCCCcCccccEEeCCCC-ccCc--CCC---cCCCcCEEECCCCC-CCC-cch-h--h-CCCCEEECcCCCCCchhh-
Confidence 88743337889999999998 4663 453 67899999999998 765 233 3 2 899999999997 5666
Q ss_pred ccCCCCC-------cEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccc
Q 003270 280 SVRLPML-------TVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQ 333 (835)
Q Consensus 280 ~~~~~~L-------~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~ 333 (835)
+.. +| +.|++++| .+.. .+..+..+++|+.|++++|.+.+.+|..+..+.
T Consensus 198 ~~~--~L~~~~~~L~~L~Ls~N-~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 198 VPV--RNHHSEETEIFFRCREN-RITH-IPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC----------CCEEEECCSS-CCCC-CCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred HHH--hhhcccccceEEecCCC-ccee-cCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 443 67 99999997 6664 566677899999999999999998887665544
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-13 Score=145.36 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=122.4
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCccccc-ccccCCcccE-EeccCccccccc----cCCCCCcEE
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE-IPINHDQLRR-LEITKCRVMRVS----IRCPQLEHL 196 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~-L~l~~~~~~~~~----~~l~~L~~L 196 (835)
+++++|++++|.|+..-+.+|+++++|++|++++|.+.+.++. .+.+++++++ +.+.+|++..+. ..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 4677777777777755455677777777777777776555543 4555665554 334445554331 234555555
Q ss_pred EecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC--
Q 003270 197 SLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-- 274 (835)
Q Consensus 197 ~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-- 274 (835)
++++|.+.... +..+....++..+++.++..+.......+......++.|++++|.
T Consensus 110 ~l~~n~l~~~~----------------------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~ 167 (350)
T 4ay9_X 110 LISNTGIKHLP----------------------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ 167 (350)
T ss_dssp EEEEECCSSCC----------------------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC
T ss_pred cccccccccCC----------------------chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc
Confidence 55554443100 011122233444444433223321111122112346667777665
Q ss_pred CCCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccc
Q 003270 275 NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLS 354 (835)
Q Consensus 275 ~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~ 354 (835)
.++...+...+|+++.+.++..+.......+..+++|++|++++|.+..-.+..+.++++|...++.+++.+.
T Consensus 168 ~i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~~l~~lP------- 240 (350)
T 4ay9_X 168 EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP------- 240 (350)
T ss_dssp EECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCTTCCCCC-------
T ss_pred CCChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCCCcCcCC-------
Confidence 5566666667788888876545666555667888999999999987654333457788888777765554432
Q ss_pred eeeeccCCCcceeeec
Q 003270 355 SIMVSNCAALHRINIT 370 (835)
Q Consensus 355 ~~~l~~~~~L~~L~l~ 370 (835)
.+.++++|+.+++.
T Consensus 241 --~l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 241 --TLEKLVALMEASLT 254 (350)
T ss_dssp --CTTTCCSCCEEECS
T ss_pred --CchhCcChhhCcCC
Confidence 24455566655554
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.1e-13 Score=148.99 Aligned_cols=167 Identities=20% Similarity=0.249 Sum_probs=74.2
Q ss_pred hCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccc--cCCCCCcEEEe
Q 003270 121 LLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSL 198 (835)
Q Consensus 121 ~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~l~~L~~L~l 198 (835)
.+++|+.|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+..+. ..+++|++|++
T Consensus 41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L 116 (605)
T 1m9s_A 41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL 116 (605)
T ss_dssp HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence 344455555555544432 1 34455555555555555443222 444444444444444443221 12333333333
Q ss_pred cccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCC
Q 003270 199 KRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNI 276 (835)
Q Consensus 199 ~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l 276 (835)
++|.+. ..+..+++|+.|++++| .+.+ + ..+..+++|++|+|++|. +.+..+
T Consensus 117 s~N~l~~l~~l~~l~~L~~L~Ls~N-~l~~--l-~~l~~l~~L~~L~Ls~N~-l~~~~~--------------------- 170 (605)
T 1m9s_A 117 EHNGISDINGLVHLPQLESLYLGNN-KITD--I-TVLSRLTKLDTLSLEDNQ-ISDIVP--------------------- 170 (605)
T ss_dssp TTSCCCCCGGGGGCTTCSEEECCSS-CCCC--C-GGGGSCTTCSEEECCSSC-CCCCGG---------------------
T ss_pred cCCCCCCCccccCCCccCEEECCCC-ccCC--c-hhhcccCCCCEEECcCCc-CCCchh---------------------
Confidence 333332 23444445555555544 2332 1 233444455555555444 332222
Q ss_pred CccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccc
Q 003270 277 SLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLT 323 (835)
Q Consensus 277 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 323 (835)
+..+++|+.|++++| .+.+. ..+..+++|+.|++++|.+.+
T Consensus 171 ---l~~l~~L~~L~Ls~N-~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 171 ---LAGLTKLQNLYLSKN-HISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp ---GTTCTTCCEEECCSS-CCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred ---hccCCCCCEEECcCC-CCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 334444444444443 34332 345556666666666665544
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.9e-13 Score=132.57 Aligned_cols=150 Identities=12% Similarity=0.093 Sum_probs=101.6
Q ss_pred ccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccc
Q 003270 499 TLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQN 578 (835)
Q Consensus 499 ~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 578 (835)
.++++++.+ ..+|..+ .+.+++|++++| .++.......+..+++|++|++++|.... ..+..|..+++
T Consensus 15 ~l~~s~n~l--------~~iP~~~--~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~i~~-i~~~~~~~l~~ 82 (220)
T 2v70_A 15 TVDCSNQKL--------NKIPEHI--PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASG 82 (220)
T ss_dssp EEECCSSCC--------SSCCSCC--CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSCCCE-ECTTTTTTCTT
T ss_pred EeEeCCCCc--------ccCccCC--CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCcCCE-ECHHHhCCCCC
Confidence 445555554 4455433 345677777777 45432222346677778888887777443 32456777888
Q ss_pred cceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccE
Q 003270 579 LTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTH 657 (835)
Q Consensus 579 L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~ 657 (835)
|++|++++|.+++++. .|..+++|++|++++|. +++..+..+ ..+++|+.|++++|++++ ..+..|..+++|++
T Consensus 83 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~ 157 (220)
T 2v70_A 83 VNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-ITCVGNDSF---IGLSSVRLLSLYDNQITT-VAPGAFDTLHSLST 157 (220)
T ss_dssp CCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSC-CCCBCTTSS---TTCTTCSEEECTTSCCCC-BCTTTTTTCTTCCE
T ss_pred CCEEECCCCccCccCHhHhcCCcCCCEEECCCCc-CCeECHhHc---CCCccCCEEECCCCcCCE-ECHHHhcCCCCCCE
Confidence 8888888888887655 57778888888888877 776655543 667788888888888776 34666777888888
Q ss_pred EEccCCCC
Q 003270 658 VSLNGCGN 665 (835)
Q Consensus 658 L~l~~~~~ 665 (835)
|++++|+-
T Consensus 158 L~L~~N~l 165 (220)
T 2v70_A 158 LNLLANPF 165 (220)
T ss_dssp EECCSCCE
T ss_pred EEecCcCC
Confidence 88888763
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.38 E-value=1.8e-12 Score=124.67 Aligned_cols=109 Identities=18% Similarity=0.161 Sum_probs=51.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.++ +..+..+..+++|++|++++| .+++ ..+..+..+++|++|++++|..++..
T Consensus 84 l~~l~~L~~L~l~~n~l~-------~~~~~~l~~l~~L~~L~Ls~n-~i~~-~~~~~l~~l~~L~~L~L~~n~~i~~~-- 152 (197)
T 4ezg_A 84 ISGLSNLERLRIMGKDVT-------SDKIPNLSGLTSLTLLDISHS-AHDD-SILTKINTLPKVNSIDLSYNGAITDI-- 152 (197)
T ss_dssp GTTCTTCCEEEEECTTCB-------GGGSCCCTTCTTCCEEECCSS-BCBG-GGHHHHTTCSSCCEEECCSCTBCCCC--
T ss_pred hhcCCCCCEEEeECCccC-------cccChhhcCCCCCCEEEecCC-ccCc-HhHHHHhhCCCCCEEEccCCCCcccc--
Confidence 344455555555555443 334444555666666666665 3332 12333445555555555555433332
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEeccccc
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACK 611 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~ 611 (835)
..+..+++|++|++++|.+++++ .+..+++|++|++++|+
T Consensus 153 ~~l~~l~~L~~L~l~~n~i~~~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 153 MPLKTLPELKSLNIQFDGVHDYR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp GGGGGCSSCCEEECTTBCCCCCT-TGGGCSSCCEEEECBC-
T ss_pred HhhcCCCCCCEEECCCCCCcChH-HhccCCCCCEEEeeCcc
Confidence 23444555555555555554443 34444455555555444
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.38 E-value=1e-12 Score=148.08 Aligned_cols=149 Identities=21% Similarity=0.193 Sum_probs=122.7
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|.+. .++. +..+++|+.|++++| .+.+ ++ .+..+++|+.|++++|.... +
T Consensus 61 l~~l~~L~~L~Ls~N~l~--------~~~~-l~~l~~L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N~l~~---l 124 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLT--------DIKP-LTNLKNLGWLFLDEN-KIKD--LS-SLKDLKKLKSLSLEHNGISD---I 124 (605)
T ss_dssp GGGCTTCCEEECTTSCCC--------CCGG-GGGCTTCCEEECCSS-CCCC--CT-TSTTCTTCCEEECTTSCCCC---C
T ss_pred HccCCCCCEEEeeCCCCC--------CChh-hccCCCCCEEECcCC-CCCC--Ch-hhccCCCCCEEEecCCCCCC---C
Confidence 677899999999999873 3444 788999999999998 5654 33 57889999999999998654 3
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++|+.|+|++|.++++ ..+..+++|+.|+|++|. +++..+ +..+++|+.|++++|.+++. ..+.
T Consensus 125 ~~l~~l~~L~~L~Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~-l~~~~~-----l~~l~~L~~L~Ls~N~i~~l---~~l~ 194 (605)
T 1m9s_A 125 NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQ-ISDIVP-----LAGLTKLQNLYLSKNHISDL---RALA 194 (605)
T ss_dssp GGGGGCTTCSEEECCSSCCCCC-GGGGSCTTCSEEECCSSC-CCCCGG-----GTTCTTCCEEECCSSCCCBC---GGGT
T ss_pred ccccCCCccCEEECCCCccCCc-hhhcccCCCCEEECcCCc-CCCchh-----hccCCCCCEEECcCCCCCCC---hHHc
Confidence 4688899999999999999988 668889999999999998 877654 37789999999999999873 3578
Q ss_pred hCCCccEEEccCCCC
Q 003270 651 YCTHLTHVSLNGCGN 665 (835)
Q Consensus 651 ~~~~L~~L~l~~~~~ 665 (835)
.+++|+.|++++|+-
T Consensus 195 ~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 195 GLKNLDVLELFSQEC 209 (605)
T ss_dssp TCTTCSEEECCSEEE
T ss_pred cCCCCCEEEccCCcC
Confidence 899999999998863
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.35 E-value=6.8e-13 Score=129.94 Aligned_cols=140 Identities=16% Similarity=0.128 Sum_probs=93.6
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
..+|..+. ++|++|++++| .++. ..+..+..+++|++|++++|.... ..+..|..+++|++|+|++|.++.+|.
T Consensus 24 ~~iP~~l~--~~l~~L~l~~n-~i~~-i~~~~~~~l~~L~~L~Ls~N~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 98 (220)
T 2v9t_B 24 TEIPTNLP--ETITEIRLEQN-TIKV-IPPGAFSPYKKLRRIDLSNNQISE-LAPDAFQGLRSLNSLVLYGNKITELPKS 98 (220)
T ss_dssp SSCCSSCC--TTCCEEECCSS-CCCE-ECTTSSTTCTTCCEEECCSSCCCE-ECTTTTTTCSSCCEEECCSSCCCCCCTT
T ss_pred CcCCCccC--cCCCEEECCCC-cCCC-cCHhHhhCCCCCCEEECCCCcCCC-cCHHHhhCCcCCCEEECCCCcCCccCHh
Confidence 34444332 56777777776 3432 122346667777777777776443 335667777888888888888877766
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
.|..+++|++|++++|. +++..+..+ ..+++|+.|++++|+++. ..+..|..+++|++|++++|+-
T Consensus 99 ~f~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~ 164 (220)
T 2v9t_B 99 LFEGLFSLQLLLLNANK-INCLRVDAF---QDLHNLNLLSLYDNKLQT-IAKGTFSPLRAIQTMHLAQNPF 164 (220)
T ss_dssp TTTTCTTCCEEECCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCE
T ss_pred HccCCCCCCEEECCCCC-CCEeCHHHc---CCCCCCCEEECCCCcCCE-ECHHHHhCCCCCCEEEeCCCCc
Confidence 46777888888888877 776655543 667788888888887776 3445567777888888887763
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.7e-12 Score=118.62 Aligned_cols=130 Identities=21% Similarity=0.171 Sum_probs=96.9
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHHhcccccc
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQLK 603 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L~ 603 (835)
.++|+.|++++| .+.++.++..+..+++|++|++++|..... ..+..+++|++|++++|.+++ +|..+..+++|+
T Consensus 16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~ 91 (149)
T 2je0_A 16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLT 91 (149)
T ss_dssp GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCC
T ss_pred CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCC
Confidence 367778888887 465455666677788888888888865443 567788888888888888887 777777888899
Q ss_pred EEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHH---HHHhhCCCccEEEccC
Q 003270 604 VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIE---ELLAYCTHLTHVSLNG 662 (835)
Q Consensus 604 ~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~~~~L~~L~l~~ 662 (835)
+|++++|+ +++.... ..+..+++|++|++++|.+++. .+ ..+..+++|++|++++
T Consensus 92 ~L~ls~N~-i~~~~~~--~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 92 HLNLSGNK-IKDLSTI--EPLKKLENLKSLDLFNCEVTNL-NDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp EEECTTSC-CCSHHHH--GGGGGCTTCCEEECTTCGGGGS-TTHHHHHHHHCTTCCEETTBC
T ss_pred EEECCCCc-CCChHHH--HHHhhCCCCCEEeCcCCcccch-HHHHHHHHHHCCCcccccCCC
Confidence 99998888 7764321 1246788899999999888762 22 5688888999888763
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.6e-13 Score=141.29 Aligned_cols=126 Identities=15% Similarity=0.098 Sum_probs=86.1
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcccccc
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLK 603 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~ 603 (835)
..++..+.+.++ +...........|++|+.+++.+|. +..++..+|.+|++|+++++.+| +..++. +|.+|++|+
T Consensus 201 ~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~ 276 (329)
T 3sb4_A 201 PRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLA 276 (329)
T ss_dssp GGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred ccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhcc
Confidence 455566666653 3333344334457888888888766 44555667888888888888887 666655 788888888
Q ss_pred -EEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEc
Q 003270 604 -VLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSL 660 (835)
Q Consensus 604 -~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l 660 (835)
.+.+.+ . ++...... |.+|++|+.+++++|++.. .-+..|.+|++|++++.
T Consensus 277 ~~l~l~~-~-l~~I~~~a---F~~c~~L~~l~l~~n~i~~-I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 277 GTLELPA-S-VTAIEFGA---FMGCDNLRYVLATGDKITT-LGDELFGNGVPSKLIYK 328 (329)
T ss_dssp EEEEECT-T-CCEECTTT---TTTCTTEEEEEECSSCCCE-ECTTTTCTTCCCCEEEC
T ss_pred EEEEEcc-c-ceEEchhh---hhCCccCCEEEeCCCccCc-cchhhhcCCcchhhhcc
Confidence 888877 3 66555444 4778888888888777765 34456778888888764
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.34 E-value=8.1e-14 Score=135.70 Aligned_cols=181 Identities=12% Similarity=0.051 Sum_probs=100.4
Q ss_pred CCCceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCE
Q 003270 72 EDFWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKS 151 (835)
Q Consensus 72 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~ 151 (835)
.|.|+++++.....+.- + ....+++++|++++ +.+....+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus 6 ~C~~~~v~c~~~~l~~~--p--~~~~~~l~~L~l~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 80 (208)
T 2o6s_A 6 SCSGTTVECYSQGRTSV--P--TGIPAQTTYLDLET-NSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTY 80 (208)
T ss_dssp EEETTEEECCSSCCSSC--C--SCCCTTCSEEECCS-SCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred EECCCEEEecCCCccCC--C--CCCCCCCcEEEcCC-CccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCE
Confidence 35678888876432210 0 01234566666666 3455444445566666666666666666554555566666666
Q ss_pred EEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHH
Q 003270 152 LNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRL 231 (835)
Q Consensus 152 L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~ 231 (835)
|++++|.+++..+..+.++++|++|++++|.+..+.. ..+..+++|++|++++| .++. ..+.
T Consensus 81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~----------------~~~~~l~~L~~L~l~~N-~l~~-~~~~ 142 (208)
T 2o6s_A 81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPD----------------GVFDKLTQLKDLRLYQN-QLKS-VPDG 142 (208)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT----------------TTTTTCTTCCEEECCSS-CCSC-CCTT
T ss_pred EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCH----------------hHhccCCcCCEEECCCC-ccce-eCHH
Confidence 6666666654444445555555555555555543221 23455666777777666 3441 1122
Q ss_pred HHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCC
Q 003270 232 AATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLP 284 (835)
Q Consensus 232 ~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~ 284 (835)
.+..+++|++|++++|. +.. .+++|+.|+++.+. .+|..++.++
T Consensus 143 ~~~~l~~L~~L~l~~N~-~~~--------~~~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 143 VFDRLTSLQYIWLHDNP-WDC--------TCPGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp TTTTCTTCCEEECCSCC-BCC--------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred HhccCCCccEEEecCCC-eec--------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence 35667777777777776 331 45566666665543 5565555444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.32 E-value=1.7e-12 Score=121.42 Aligned_cols=132 Identities=23% Similarity=0.209 Sum_probs=105.3
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccC-chHHHhccccc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTN-LEPVFESCLQL 602 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~-l~~~~~~~~~L 602 (835)
..++|++|++++| .++++.++..+..+++|++|++++|..... ..+..+++|++|++++|.+++ +|..+..+++|
T Consensus 22 ~~~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 3477888888888 566556777778888888888888885443 577888999999999999998 77788889999
Q ss_pred cEEecccccccchhhH-HHHHhcCCCCCccEEeCCCcccchHHHH---HHHhhCCCccEEEccCCC
Q 003270 603 KVLKLQACKYLTNTSL-ESLYKKGSLPALQELDLSYGTLCQSAIE---ELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 603 ~~L~l~~~~~l~~~~~-~~l~~~~~~~~L~~L~l~~n~~~~~~~~---~~l~~~~~L~~L~l~~~~ 664 (835)
++|++++|. +++... .. +..+++|+.|++++|.+++. .+ ..+..+++|++|++++|.
T Consensus 98 ~~L~Ls~N~-l~~~~~~~~---l~~l~~L~~L~l~~N~l~~~-~~~~~~~~~~l~~L~~L~l~~n~ 158 (168)
T 2ell_A 98 THLNLSGNK-LKDISTLEP---LKKLECLKSLDLFNCEVTNL-NDYRESVFKLLPQLTYLDGYDRE 158 (168)
T ss_dssp CEEECBSSS-CCSSGGGGG---GSSCSCCCEEECCSSGGGTS-TTHHHHHHTTCSSCCEETTEETT
T ss_pred CEEeccCCc-cCcchhHHH---HhcCCCCCEEEeeCCcCcch-HHHHHHHHHhCccCcEecCCCCC
Confidence 999999997 876532 33 47889999999999988762 22 478889999999999986
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.1e-12 Score=125.60 Aligned_cols=148 Identities=20% Similarity=0.102 Sum_probs=93.5
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++++.+++++|.++ +..+..+..+++|++|++++| .++. ..+..+..+++|++|++++|..... ....+.
T Consensus 28 ~~l~~L~l~~n~l~-------~~~~~~~~~l~~L~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~ 97 (208)
T 2o6s_A 28 AQTTYLDLETNSLK-------SLPNGVFDELTSLTQLYLGGN-KLQS-LPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFD 97 (208)
T ss_dssp TTCSEEECCSSCCC-------CCCTTTTTTCTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTT
T ss_pred CCCcEEEcCCCccC-------cCChhhhcccccCcEEECCCC-ccCc-cChhhcCCCCCcCEEECCCCcCCcc-CHhHhc
Confidence 45666666666663 323334567777777777776 4542 1223356677777777777764432 234466
Q ss_pred hccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC
Q 003270 575 SLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 653 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 653 (835)
.+++|++|++++|.+++++. .+..+++|++|++++|. +++..... +..+++|+.|++++|.+.. .++
T Consensus 98 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~~--------~~~ 165 (208)
T 2o6s_A 98 KLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ-LKSVPDGV---FDRLTSLQYIWLHDNPWDC--------TCP 165 (208)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSCCBCC--------CTT
T ss_pred CccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc-cceeCHHH---hccCCCccEEEecCCCeec--------CCC
Confidence 77777777777777777655 46677777777777776 66544332 2566777777777776653 355
Q ss_pred CccEEEccCCC
Q 003270 654 HLTHVSLNGCG 664 (835)
Q Consensus 654 ~L~~L~l~~~~ 664 (835)
+|+.|++..|.
T Consensus 166 ~l~~L~~~~n~ 176 (208)
T 2o6s_A 166 GIRYLSEWINK 176 (208)
T ss_dssp TTHHHHHHHHH
T ss_pred CHHHHHHHHHh
Confidence 66766666654
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.4e-12 Score=129.79 Aligned_cols=147 Identities=19% Similarity=0.175 Sum_probs=102.9
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.+ ..++ .+..+++|++|++++| .+++ ++. +..+++|++|++++|...+..
T Consensus 37 ~~~l~~L~~L~l~~n~i--------~~l~-~l~~l~~L~~L~L~~N-~i~~--~~~-l~~l~~L~~L~L~~N~l~~l~-- 101 (263)
T 1xeu_A 37 QKELSGVQNFNGDNSNI--------QSLA-GMQFFTNLKELHLSHN-QISD--LSP-LKDLTKLEELSVNRNRLKNLN-- 101 (263)
T ss_dssp HHHHTTCSEEECTTSCC--------CCCT-TGGGCTTCCEEECCSS-CCCC--CGG-GTTCSSCCEEECCSSCCSCCT--
T ss_pred hhhcCcCcEEECcCCCc--------ccch-HHhhCCCCCEEECCCC-ccCC--Chh-hccCCCCCEEECCCCccCCcC--
Confidence 45566777777777766 3444 4667778888888877 4543 333 677788888888887755421
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
.+.. ++|++|++++|.+++++ .+..+++|+.|++++|+ +++.. . +..+++|+.|++++|++++. ..+.
T Consensus 102 -~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~-i~~~~--~---l~~l~~L~~L~L~~N~i~~~---~~l~ 169 (263)
T 1xeu_A 102 -GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNK-LKSIV--M---LGFLSKLEVLDLHGNEITNT---GGLT 169 (263)
T ss_dssp -TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSC-CCBCG--G---GGGCTTCCEEECTTSCCCBC---TTST
T ss_pred -cccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCc-CCCCh--H---HccCCCCCEEECCCCcCcch---HHhc
Confidence 2333 78888888888888765 47778888888888887 77652 2 35678888888888888763 5567
Q ss_pred hCCCccEEEccCCC
Q 003270 651 YCTHLTHVSLNGCG 664 (835)
Q Consensus 651 ~~~~L~~L~l~~~~ 664 (835)
.+++|+.|++++|+
T Consensus 170 ~l~~L~~L~l~~N~ 183 (263)
T 1xeu_A 170 RLKKVNWIDLTGQK 183 (263)
T ss_dssp TCCCCCEEEEEEEE
T ss_pred cCCCCCEEeCCCCc
Confidence 78888888888775
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.5e-12 Score=134.70 Aligned_cols=158 Identities=21% Similarity=0.120 Sum_probs=100.3
Q ss_pred CCcccccccceeEEEeecCCcccccccc-cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSDAYI-NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~~~~-~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
.++.|++++|.++ +..+..+. .+++|++|++++| ++.. ..+..+..+++|++|++++|.... ..+..|.
T Consensus 40 ~l~~L~Ls~N~l~-------~l~~~~~~~~l~~L~~L~L~~N-~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~~~ 109 (361)
T 2xot_A 40 YTALLDLSHNNLS-------RLRAEWTPTRLTNLHSLLLSHN-HLNF-ISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFS 109 (361)
T ss_dssp TCSEEECCSSCCC-------EECTTSSSSCCTTCCEEECCSS-CCCE-ECTTTTTTCTTCCEEECCSSCCCE-ECTTTTT
T ss_pred CCCEEECCCCCCC-------ccChhhhhhcccccCEEECCCC-cCCc-cChhhccCCCCCCEEECCCCcCCc-CCHHHhC
Confidence 4566777777664 22233344 6777777777777 4543 123446677777777777777433 2244577
Q ss_pred hccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCC
Q 003270 575 SLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCT 653 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~ 653 (835)
.+++|++|+|++|.+..+ +..|..+++|+.|+|++|. ++......+..+..+++|+.|++++|+++. ..+..+..++
T Consensus 110 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~ 187 (361)
T 2xot_A 110 DLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKK-LPLTDLQKLP 187 (361)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCC-CCHHHHHHSC
T ss_pred CCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCc-cCHHHhhhcc
Confidence 777888888888877765 3467777788888888777 665543332112457778888888887775 3445566666
Q ss_pred C--ccEEEccCCCC
Q 003270 654 H--LTHVSLNGCGN 665 (835)
Q Consensus 654 ~--L~~L~l~~~~~ 665 (835)
. ++.|++++|+-
T Consensus 188 ~~~l~~l~l~~N~~ 201 (361)
T 2xot_A 188 AWVKNGLYLHNNPL 201 (361)
T ss_dssp HHHHTTEECCSSCE
T ss_pred HhhcceEEecCCCc
Confidence 6 37778877764
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.2e-14 Score=160.86 Aligned_cols=188 Identities=16% Similarity=0.150 Sum_probs=127.6
Q ss_pred hhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCC-------------CCcccccccccCCcccEEe-ccCccccc
Q 003270 120 SLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDAT-------------LGNGVQEIPINHDQLRRLE-ITKCRVMR 185 (835)
Q Consensus 120 ~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~-------------~~~~~~~~~~~l~~L~~L~-l~~~~~~~ 185 (835)
..+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 44667777777777775 567777777777777775553 3445566666777777776 5544332
Q ss_pred cccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC
Q 003270 186 VSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL 265 (835)
Q Consensus 186 ~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L 265 (835)
.|+.+.+++|.+..... ..|+.|++++| .++ .+|. ++++++|++|++++|. ++ ..|..+. .+++|
T Consensus 424 ------~L~~l~l~~n~i~~l~~--~~L~~L~Ls~n-~l~--~lp~-~~~l~~L~~L~Ls~N~-l~-~lp~~~~-~l~~L 488 (567)
T 1dce_A 424 ------DLRSKFLLENSVLKMEY--ADVRVLHLAHK-DLT--VLCH-LEQLLLVTHLDLSHNR-LR-ALPPALA-ALRCL 488 (567)
T ss_dssp ------HHHHHHHHHHHHHHHHH--TTCSEEECTTS-CCS--SCCC-GGGGTTCCEEECCSSC-CC-CCCGGGG-GCTTC
T ss_pred ------hhhhhhhhcccccccCc--cCceEEEecCC-CCC--CCcC-ccccccCcEeecCccc-cc-ccchhhh-cCCCC
Confidence 23334444444443211 25788888887 465 2455 7788888888888887 66 4445554 78888
Q ss_pred cEEecCCCC--CCCccccCCCCCcEEecCCCCCCChhh-HHHhhhccCccEEEccCCCcccccc
Q 003270 266 RILNSSYCP--NISLESVRLPMLTVLQLHSCEGITSAS-MAAISHSYMLEVLELDNCNLLTSVS 326 (835)
Q Consensus 266 ~~L~l~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~ 326 (835)
+.|++++|. .+| .++.+++|++|++++| .+.+.. +..++.+++|++|++++|.+.+..|
T Consensus 489 ~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 489 EVLQASDNALENVD-GVANLPRLQELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CEEECCSSCCCCCG-GGTTCSSCCEEECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred CEEECCCCCCCCCc-ccCCCCCCcEEECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 888888876 555 6778888888888886 677665 7788888899999998888655433
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7e-12 Score=117.18 Aligned_cols=136 Identities=21% Similarity=0.120 Sum_probs=100.5
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++|+.+++++|.++ .+.+|..+..+++|++|++++| .+++ + ..+..+++|++|++++|...... +..+.
T Consensus 24 ~~L~~L~l~~n~l~------~~~i~~~~~~l~~L~~L~l~~n-~l~~--~-~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~ 92 (168)
T 2ell_A 24 AAVRELVLDNCKSN------DGKIEGLTAEFVNLEFLSLINV-GLIS--V-SNLPKLPKLKKLELSENRIFGGL-DMLAE 92 (168)
T ss_dssp TSCSEEECCSCBCB------TTBCSSCCGGGGGCCEEEEESS-CCCC--C-SSCCCCSSCCEEEEESCCCCSCC-CHHHH
T ss_pred ccCCEEECCCCCCC------hhhHHHHHHhCCCCCEEeCcCC-CCCC--h-hhhccCCCCCEEECcCCcCchHH-HHHHh
Confidence 56666666666652 1366777778888888888888 4654 2 55778888888888888866532 55667
Q ss_pred hccccceeeecCccccCch--HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 575 SLQNLTMLDLSYTFLTNLE--PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
.+++|+.|++++|.+++++ ..+..+++|+.|++++|+ +++........+..+++|+.|++++|.+..
T Consensus 93 ~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~ 161 (168)
T 2ell_A 93 KLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCE-VTNLNDYRESVFKLLPQLTYLDGYDREDQE 161 (168)
T ss_dssp HCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSG-GGTSTTHHHHHHTTCSSCCEETTEETTSCB
T ss_pred hCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCc-CcchHHHHHHHHHhCccCcEecCCCCChhh
Confidence 7889999999999988876 578888899999999988 776654111124778899999998887654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1e-11 Score=113.40 Aligned_cols=132 Identities=22% Similarity=0.102 Sum_probs=100.7
Q ss_pred CCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 494 CPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 494 ~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
.++++.+++++|.++ .+.+|..+..+++|++|++++| .+++. ..+..+++|++|++++|...+.. +..+
T Consensus 16 ~~~l~~L~l~~n~l~------~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~-~~~~ 84 (149)
T 2je0_A 16 PSDVKELVLDNSRSN------EGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNRVSGGL-EVLA 84 (149)
T ss_dssp GGGCSEEECTTCBCB------TTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSCCCSCT-HHHH
T ss_pred CccCeEEEccCCcCC------hhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCcccchH-HHHh
Confidence 356777777777662 1367777788899999999998 56543 56778899999999999866543 6677
Q ss_pred hhccccceeeecCccccCch--HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCC
Q 003270 574 RSLQNLTMLDLSYTFLTNLE--PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSY 637 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~--~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~ 637 (835)
..+++|++|++++|.+++++ ..+..+++|++|++++|+ +++........+..+++|+.|++++
T Consensus 85 ~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 85 EKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp HHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred hhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCCC
Confidence 78999999999999999865 678899999999999998 8776552111236688999998864
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=1.3e-11 Score=121.62 Aligned_cols=132 Identities=18% Similarity=0.050 Sum_probs=86.0
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhh-hhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLS-ATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
++|+.|++++|.++ +..|..+..+++|++|++++| .+.. ++ ..+..+++|+.|++++|..... ....+
T Consensus 40 ~~L~~L~Ls~n~i~-------~~~~~~~~~l~~L~~L~L~~N-~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~ 108 (229)
T 3e6j_A 40 TNAQILYLHDNQIT-------KLEPGVFDSLINLKELYLGSN-QLGA--LPVGVFDSLTQLTVLDLGTNQLTVL-PSAVF 108 (229)
T ss_dssp TTCSEEECCSSCCC-------CCCTTTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSCCCCC-CTTTT
T ss_pred CCCCEEEcCCCccC-------ccCHHHhhCccCCcEEECCCC-CCCC--cChhhcccCCCcCEEECCCCcCCcc-ChhHh
Confidence 56677777777664 444566677777777777777 3432 33 3356677777777777764432 23446
Q ss_pred hhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 574 RSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
..+++|++|++++|.++.+|..+..+++|+.|++++|+ +++..... +..+++|+.|++++|.+.
T Consensus 109 ~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 109 DRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQ-LKSIPHGA---FDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSC-CCCCCTTT---TTTCTTCCEEECTTSCBC
T ss_pred CcchhhCeEeccCCcccccCcccccCCCCCEEECCCCc-CCccCHHH---HhCCCCCCEEEeeCCCcc
Confidence 67777777777777777777767777777777777776 66554432 356677777777777654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.26 E-value=4e-12 Score=125.40 Aligned_cols=139 Identities=25% Similarity=0.140 Sum_probs=113.6
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
..+|..+ .++|++|++++| .+.. ..+..+..+++|++|++++|.... .....+..+++|+.|++++|.+++++.
T Consensus 32 ~~ip~~~--~~~L~~L~Ls~n-~i~~-~~~~~~~~l~~L~~L~L~~N~l~~-i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 106 (229)
T 3e6j_A 32 ASVPAGI--PTNAQILYLHDN-QITK-LEPGVFDSLINLKELYLGSNQLGA-LPVGVFDSLTQLTVLDLGTNQLTVLPSA 106 (229)
T ss_dssp SSCCSCC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred CccCCCC--CCCCCEEEcCCC-ccCc-cCHHHhhCccCCcEEECCCCCCCC-cChhhcccCCCcCEEECCCCcCCccChh
Confidence 5666544 389999999998 4543 345668899999999999998643 334568899999999999999999876
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
.|..+++|++|++++|. ++.. +.. +..+++|+.|++++|+++. ..+..+..+++|++|++++|+-
T Consensus 107 ~~~~l~~L~~L~Ls~N~-l~~l-p~~---~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 171 (229)
T 3e6j_A 107 VFDRLVHLKELFMCCNK-LTEL-PRG---IERLTHLTHLALDQNQLKS-IPHGAFDRLSSLTHAYLFGNPW 171 (229)
T ss_dssp TTTTCTTCCEEECCSSC-CCSC-CTT---GGGCTTCSEEECCSSCCCC-CCTTTTTTCTTCCEEECTTSCB
T ss_pred HhCcchhhCeEeccCCc-cccc-Ccc---cccCCCCCEEECCCCcCCc-cCHHHHhCCCCCCEEEeeCCCc
Confidence 57899999999999998 8744 333 3678999999999999986 3446688899999999999974
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=2e-13 Score=152.95 Aligned_cols=123 Identities=23% Similarity=0.212 Sum_probs=81.3
Q ss_pred CcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEe
Q 003270 527 LLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLK 606 (835)
Q Consensus 527 ~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~ 606 (835)
.|+.|++++| .++. +|. +..+++|+.|++++|.... . |..++.+++|+.|+|++|.++++| .++.+++|++|+
T Consensus 442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~l~~-l-p~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~ 514 (567)
T 1dce_A 442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNRLRA-L-PPALAALRCLEVLQASDNALENVD-GVANLPRLQELL 514 (567)
T ss_dssp TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSCCCC-C-CGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEE
T ss_pred CceEEEecCC-CCCC--CcC-ccccccCcEeecCcccccc-c-chhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEE
Confidence 4677777776 4543 554 6677777777777776552 2 556777777777777777777776 677777777777
Q ss_pred cccccccchhh-HHHHHhcCCCCCccEEeCCCcccchH--HHHHHHhhCCCccEEEc
Q 003270 607 LQACKYLTNTS-LESLYKKGSLPALQELDLSYGTLCQS--AIEELLAYCTHLTHVSL 660 (835)
Q Consensus 607 l~~~~~l~~~~-~~~l~~~~~~~~L~~L~l~~n~~~~~--~~~~~l~~~~~L~~L~l 660 (835)
+++|. +++.. +..+ +.+++|+.|++++|++++. .....+..+++|+.|++
T Consensus 515 Ls~N~-l~~~~~p~~l---~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 515 LCNNR-LQQSAAIQPL---VSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp CCSSC-CCSSSTTGGG---GGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCC-CCCCCCcHHH---hcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 77776 66664 4443 5677777777777777652 12234455777777753
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-11 Score=128.92 Aligned_cols=37 Identities=11% Similarity=0.258 Sum_probs=24.8
Q ss_pred CCeeEEEccCCcchhhHHHHHHhh-CCcCcEEEcCCcccC
Q 003270 98 PNATEVNIYGAPAIHLLVMKAVSL-LRNLEALTLGRGQLG 136 (835)
Q Consensus 98 ~~l~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~i~ 136 (835)
+++++|.+++ .+...-...+.. +++|+.|+|++|.+.
T Consensus 25 ~~l~~L~l~g--~i~~~~~~~l~~~l~~L~~LdLs~n~i~ 62 (329)
T 3sb4_A 25 NSITHLTLTG--KLNAEDFRHLRDEFPSLKVLDISNAEIK 62 (329)
T ss_dssp HHCSEEEEEE--EECHHHHHHHHHSCTTCCEEEEEEEEEC
T ss_pred CceeEEEEec--cccHHHHHHHHHhhccCeEEecCcceeE
Confidence 3678888887 344333345555 778888888888776
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-11 Score=125.15 Aligned_cols=123 Identities=16% Similarity=0.217 Sum_probs=69.8
Q ss_pred HHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc-CCCCCcEE
Q 003270 118 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHL 196 (835)
Q Consensus 118 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~L~~L 196 (835)
.+..+++|++|++++|.+... + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+..+.. ..++|++|
T Consensus 36 ~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~l~~l~~~~~~~L~~L 111 (263)
T 1xeu_A 36 SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLSRL 111 (263)
T ss_dssp CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSCCSCCTTCCCSSCCEE
T ss_pred chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCccCCcCccccCcccEE
Confidence 355666777777777766642 3 56667777777777777654333 5666667777776666654321 01455555
Q ss_pred EecccchH--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCC
Q 003270 197 SLKRSNMA--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCS 248 (835)
Q Consensus 197 ~l~~~~i~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~ 248 (835)
++++|.+. ..+..+++|++|++++| .+++ ++ .+..+++|++|++++|.
T Consensus 112 ~L~~N~l~~~~~l~~l~~L~~L~Ls~N-~i~~--~~-~l~~l~~L~~L~L~~N~ 161 (263)
T 1xeu_A 112 FLDNNELRDTDSLIHLKNLEILSIRNN-KLKS--IV-MLGFLSKLEVLDLHGNE 161 (263)
T ss_dssp ECCSSCCSBSGGGTTCTTCCEEECTTS-CCCB--CG-GGGGCTTCCEEECTTSC
T ss_pred EccCCccCCChhhcCcccccEEECCCC-cCCC--Ch-HHccCCCCCEEECCCCc
Confidence 55555443 33455556666666655 3442 12 34555556666665555
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.5e-11 Score=118.74 Aligned_cols=134 Identities=18% Similarity=0.202 Sum_probs=106.1
Q ss_pred CCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
++++.|++++|.++ +..+..+..+++|++|++++| .+.. ..+..+..+++|++|++++|..... ....|.
T Consensus 32 ~~l~~L~l~~n~i~-------~i~~~~~~~l~~L~~L~Ls~N-~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~ 101 (220)
T 2v9t_B 32 ETITEIRLEQNTIK-------VIPPGAFSPYKKLRRIDLSNN-QISE-LAPDAFQGLRSLNSLVLYGNKITEL-PKSLFE 101 (220)
T ss_dssp TTCCEEECCSSCCC-------EECTTSSTTCTTCCEEECCSS-CCCE-ECTTTTTTCSSCCEEECCSSCCCCC-CTTTTT
T ss_pred cCCCEEECCCCcCC-------CcCHhHhhCCCCCCEEECCCC-cCCC-cCHHHhhCCcCCCEEECCCCcCCcc-CHhHcc
Confidence 56788888888874 333346788899999999998 4543 3356788899999999999986543 245678
Q ss_pred hccccceeeecCccccCch-HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 575 SLQNLTMLDLSYTFLTNLE-PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~-~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
.+++|++|++++|.+++++ ..|..+++|+.|++++|. +++.....+ ..+++|+.|++++|.+..
T Consensus 102 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~~~c 166 (220)
T 2v9t_B 102 GLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNK-LQTIAKGTF---SPLRAIQTMHLAQNPFIC 166 (220)
T ss_dssp TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT---TTCTTCCEEECCSSCEEC
T ss_pred CCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCc-CCEECHHHH---hCCCCCCEEEeCCCCcCC
Confidence 8999999999999999864 478899999999999998 887765543 778899999999998753
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.6e-11 Score=115.55 Aligned_cols=138 Identities=18% Similarity=0.139 Sum_probs=71.8
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++|+.+++++|.+ ..++......++|++|++++| .+++ + ..+..+++|++|++++|.... ..+
T Consensus 15 ~~~~~~L~~L~l~~n~l--------~~i~~~~~~~~~L~~L~Ls~N-~l~~--~-~~l~~l~~L~~L~Ls~N~l~~-~~~ 81 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKI--------PVIENLGATLDQFDAIDFSDN-EIRK--L-DGFPLLRRLKTLLVNNNRICR-IGE 81 (176)
T ss_dssp EECTTSCEEEECTTSCC--------CSCCCGGGGTTCCSEEECCSS-CCCE--E-CCCCCCSSCCEEECCSSCCCE-ECS
T ss_pred cCCcCCceEEEeeCCCC--------chhHHhhhcCCCCCEEECCCC-CCCc--c-cccccCCCCCEEECCCCcccc-cCc
Confidence 34455566666666655 233332223336666666666 3443 2 345556666666666665432 212
Q ss_pred HhhhhccccceeeecCccccCchH--HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
..+..+++|++|++++|.+..+|. .+..+++|+.|++++|+ ++.........+..+++|+.|++++|...+
T Consensus 82 ~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 82 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred chhhcCCCCCEEECCCCcCCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 234566666666666666665554 55566666666666665 543322211112345566666666655543
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.21 E-value=3e-12 Score=123.27 Aligned_cols=151 Identities=18% Similarity=0.142 Sum_probs=119.4
Q ss_pred cCcCCCCcccccccceeEEEeecCCccccc------ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCC
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSD------AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQS 564 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~------~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~ 564 (835)
+...+.++.++++.+.+. +.+|. .+..+++|++|++++| .+++ ++ .+..+++|++|++++|..
T Consensus 14 ~~~~~~l~~l~l~~~~l~-------~~~~~l~~l~~~~~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~l 82 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELH-------GMIPPIEKMDATLSTLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLI 82 (198)
T ss_dssp HHHTTCCCCTTCSEEECC-------BCCTTCCCCHHHHHHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEEE
T ss_pred HHhcccccCcchheeEec-------cccCcHhhhhHHHhcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCCc
Confidence 344556677777776664 44444 7889999999999998 5655 55 788899999999999986
Q ss_pred cCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHH
Q 003270 565 IGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSA 644 (835)
Q Consensus 565 ~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~ 644 (835)
... +..+..+++|++|++++|.++++| .+..+++|++|++++|+ +++.... ..+..+++|+.|++++|.+++ .
T Consensus 83 ~~l--~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l~~N~-i~~~~~~--~~l~~l~~L~~L~l~~N~l~~-~ 155 (198)
T 1ds9_A 83 KKI--ENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYMSNNK-ITNWGEI--DKLAALDKLEDLLLAGNPLYN-D 155 (198)
T ss_dssp CSC--SSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEESEEE-CCCHHHH--HHHTTTTTCSEEEECSCHHHH-H
T ss_pred ccc--cchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEECCCCc-CCchhHH--HHHhcCCCCCEEEecCCcccc-c
Confidence 532 456777899999999999999987 68889999999999998 8765431 124789999999999999876 2
Q ss_pred HH----------HHHhhCCCccEEE
Q 003270 645 IE----------ELLAYCTHLTHVS 659 (835)
Q Consensus 645 ~~----------~~l~~~~~L~~L~ 659 (835)
++ ..+..+++|++|+
T Consensus 156 ~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 156 YKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cccccchHHHHHHHHHhCCCcEEEC
Confidence 32 3478899999997
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.20 E-value=4.6e-11 Score=116.83 Aligned_cols=134 Identities=15% Similarity=0.178 Sum_probs=108.3
Q ss_pred CCCcccccccceeEEEeecCCcccc-cccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhh
Q 003270 495 PKLSTLGIEALHMVVLELKGCGVLS-DAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSL 573 (835)
Q Consensus 495 ~~L~~l~l~~~~l~~l~~~~~~~l~-~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 573 (835)
+.++.|++++|.++ +..+ ..+..+++|++|++++| .++. ..+..+..+++|++|++++|...... +..+
T Consensus 32 ~~~~~L~L~~N~l~-------~~~~~~~~~~l~~L~~L~L~~N-~i~~-i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~ 101 (220)
T 2v70_A 32 QYTAELRLNNNEFT-------VLEATGIFKKLPQLRKINFSNN-KITD-IEEGAFEGASGVNEILLTSNRLENVQ-HKMF 101 (220)
T ss_dssp TTCSEEECCSSCCC-------EECCCCCGGGCTTCCEEECCSS-CCCE-ECTTTTTTCTTCCEEECCSSCCCCCC-GGGG
T ss_pred CCCCEEEcCCCcCC-------ccCchhhhccCCCCCEEECCCC-cCCE-ECHHHhCCCCCCCEEECCCCccCccC-HhHh
Confidence 34678888888884 2212 34788999999999998 4653 23446889999999999999865543 5678
Q ss_pred hhccccceeeecCccccCc-hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 574 RSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
..+++|++|++++|.++++ |..|..+++|++|++++|. +++..+..+ ..+++|+.|++++|.+..
T Consensus 102 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 102 KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ-ITTVAPGAF---DTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSC-CCCBCTTTT---TTCTTCCEEECCSCCEEC
T ss_pred cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCc-CCEECHHHh---cCCCCCCEEEecCcCCcC
Confidence 9999999999999999987 5588999999999999998 888766654 788999999999998864
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.1e-11 Score=129.47 Aligned_cols=144 Identities=18% Similarity=0.157 Sum_probs=73.1
Q ss_pred CcEEEcCCcccChhhHHhhc-CCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccc----cCCCCCcEEEec
Q 003270 125 LEALTLGRGQLGDAFFHALA-DCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS----IRCPQLEHLSLK 199 (835)
Q Consensus 125 L~~L~l~~~~i~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~----~~l~~L~~L~l~ 199 (835)
++.|++++|.+++..+..+. .+++|++|++++|.+++..+..+.++++|++|++++|.+..+. ..+++|++|+++
T Consensus 41 l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 120 (361)
T 2xot_A 41 TALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLY 120 (361)
T ss_dssp CSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECC
Confidence 45555555555544444444 4555555555555554433344455555555555555544332 234555555555
Q ss_pred ccchH----HHhhcCCCCcEEeecCCCCCCHHHHHHHH----hcCCCCCEEeCCCCCCCChHHHHHHHHhCCC--CcEEe
Q 003270 200 RSNMA----QAVLNCPLLHLLDIASCHKLSDAAIRLAA----TSCPQLESLDMSNCSCVSDESLREIALSCAN--LRILN 269 (835)
Q Consensus 200 ~~~i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~----~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~--L~~L~ 269 (835)
+|.+. ..+..+++|++|++++| .++. ++..+ ..+++|++|+|++|. ++...+..+. .++. ++.|+
T Consensus 121 ~N~i~~~~~~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~l~~~~l~~l~ 195 (361)
T 2xot_A 121 NNHIVVVDRNAFEDMAQLQKLYLSQN-QISR--FPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQ-KLPAWVKNGLY 195 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSS-CCCS--CCGGGTC----CTTCCEEECCSSC-CCCCCHHHHH-HSCHHHHTTEE
T ss_pred CCcccEECHHHhCCcccCCEEECCCC-cCCe--eCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhh-hccHhhcceEE
Confidence 55443 34556666666666666 3442 22221 456777777777776 5543333333 4444 25566
Q ss_pred cCCC
Q 003270 270 SSYC 273 (835)
Q Consensus 270 l~~~ 273 (835)
+++|
T Consensus 196 l~~N 199 (361)
T 2xot_A 196 LHNN 199 (361)
T ss_dssp CCSS
T ss_pred ecCC
Confidence 6655
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-11 Score=127.59 Aligned_cols=137 Identities=23% Similarity=0.185 Sum_probs=108.3
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh-----hccccceeeecCccccC-----chH
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR-----SLQNLTMLDLSYTFLTN-----LEP 594 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~-----~l~~L~~L~Ls~~~~~~-----l~~ 594 (835)
.++|++|++++| .+++.++......+++|++|++++|.. ++.+...+. ..++|++|+|++|.++. ++.
T Consensus 100 ~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~l-~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~ 177 (372)
T 3un9_A 100 RHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNSL-GPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLME 177 (372)
T ss_dssp SSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSCC-CHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCCC-CHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHH
Confidence 478999999998 687777777677788999999999974 444454443 45889999999999874 455
Q ss_pred HHhccccccEEecccccccchhhHHHHHh-cCCCCCccEEeCCCcccchHH---HHHHHhhCCCccEEEccCCC
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYK-KGSLPALQELDLSYGTLCQSA---IEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~-~~~~~~L~~L~l~~n~~~~~~---~~~~l~~~~~L~~L~l~~~~ 664 (835)
.+..+++|++|+|++|. +++.+...+.. +..+++|+.|++++|.+++.+ +...+..+++|++|++++|+
T Consensus 178 ~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~ 250 (372)
T 3un9_A 178 GLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE 250 (372)
T ss_dssp HHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred HHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence 67788999999999998 88877666533 466789999999999998743 44556678999999999996
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.16 E-value=7.7e-11 Score=126.89 Aligned_cols=144 Identities=16% Similarity=0.246 Sum_probs=82.0
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.+|..++.+.+..+.. ..-...|..+..++.+..... .+. ...+..+.+|+.+.+.++ +..++.
T Consensus 249 f~~~~~l~~~~~~~~~~--------~i~~~~F~~~~~l~~~~~~~~-~i~----~~~F~~~~~L~~i~l~~~--i~~I~~ 313 (394)
T 4fs7_A 249 FYGCTDLESISIQNNKL--------RIGGSLFYNCSGLKKVIYGSV-IVP----EKTFYGCSSLTEVKLLDS--VKFIGE 313 (394)
T ss_dssp TTTCSSCCEEEECCTTC--------EECSCTTTTCTTCCEEEECSS-EEC----TTTTTTCTTCCEEEECTT--CCEECT
T ss_pred ccccccceeEEcCCCcc--------eeeccccccccccceeccCce-eec----cccccccccccccccccc--cceech
Confidence 55666666666654432 111234556666666666553 121 233556777777777643 444555
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
.+|.+|++|+.+++.++ ++.+.. +|.+|.+|+.+.+..+ ++..... +|.+|++|+.+++..+ +. .+...|
T Consensus 314 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~---aF~~C~~L~~i~lp~~-~~--~~~~~F 384 (394)
T 4fs7_A 314 EAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS--LRKIGAN---AFQGCINLKKVELPKR-LE--QYRYDF 384 (394)
T ss_dssp TTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT--CCEECTT---TBTTCTTCCEEEEEGG-GG--GGGGGB
T ss_pred hhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc--ccEehHH---HhhCCCCCCEEEECCC-CE--Ehhhee
Confidence 66777777777777543 554543 6777777777777643 4433333 2466777777777654 21 123456
Q ss_pred hhCCCccEE
Q 003270 650 AYCTHLTHV 658 (835)
Q Consensus 650 ~~~~~L~~L 658 (835)
.+|++|+++
T Consensus 385 ~~c~~L~~I 393 (394)
T 4fs7_A 385 EDTTKFKWI 393 (394)
T ss_dssp CTTCEEEEE
T ss_pred cCCCCCcEE
Confidence 666666654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.13 E-value=4.3e-11 Score=112.65 Aligned_cols=134 Identities=12% Similarity=0.060 Sum_probs=108.6
Q ss_pred ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcc
Q 003270 521 AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESC 599 (835)
Q Consensus 521 ~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~ 599 (835)
.+.++.+|++|++++| .++. ++......++|+.|++++|...+. ..+..+++|++|++++|.++++|+ .+..+
T Consensus 14 ~~~~~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l 87 (176)
T 1a9n_A 14 QYTNAVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNRICRIGEGLDQAL 87 (176)
T ss_dssp EEECTTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSCCCEECSCHHHHC
T ss_pred hcCCcCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCcccccCcchhhcC
Confidence 3567899999999999 5664 555444456999999999986543 578899999999999999999876 56899
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHH----HHhhCCCccEEEccCCCC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEE----LLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~----~l~~~~~L~~L~l~~~~~ 665 (835)
++|++|++++|. +++... +..+..+++|+.|++++|.++. ++. .+..+++|+.|++++|..
T Consensus 88 ~~L~~L~L~~N~-i~~~~~--~~~l~~l~~L~~L~l~~N~i~~--~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 88 PDLTELILTNNS-LVELGD--LDPLASLKSLTYLCILRNPVTN--KKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp TTCCEEECCSCC-CCCGGG--GGGGGGCTTCCEEECCSSGGGG--STTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCCCEEECCCCc-CCcchh--hHhhhcCCCCCEEEecCCCCCC--cHhHHHHHHHHCCccceeCCCcCCH
Confidence 999999999998 765433 2234779999999999999975 333 588999999999998863
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.12 E-value=9.4e-11 Score=124.09 Aligned_cols=168 Identities=20% Similarity=0.196 Sum_probs=97.1
Q ss_pred CCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCccccCCCCCcEEe
Q 003270 211 PLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVLQ 290 (835)
Q Consensus 211 ~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~ 290 (835)
++|++|++++| .+++.++......+++|++|+|++|. +++.....++..+. ...++|++|+
T Consensus 101 ~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~L~-----------------~~~~~L~~L~ 161 (372)
T 3un9_A 101 HALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDLLL-----------------HDQCQITTLR 161 (372)
T ss_dssp SCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHHHH-----------------STTCCCCEEE
T ss_pred CCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHHHH-----------------hcCCccceee
Confidence 56777777776 46665555555555667777777776 66666555542210 0123444444
Q ss_pred cCCCCCCChhhHHH----hhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcce
Q 003270 291 LHSCEGITSASMAA----ISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHR 366 (835)
Q Consensus 291 l~~~~~~~~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~ 366 (835)
+++| .+++..... +..+++|++|++++|.+.......+.. .+..+++|+.
T Consensus 162 Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~-------------------------~L~~~~~L~~ 215 (372)
T 3un9_A 162 LSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAA-------------------------QLDRNRQLQE 215 (372)
T ss_dssp CCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHH-------------------------HGGGCSCCCE
T ss_pred CCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHH-------------------------HHhcCCCcCe
Confidence 4444 565544333 355677888888887643211100000 2455667888
Q ss_pred eeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCC--ccEEE
Q 003270 367 INITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPM--LKSLV 427 (835)
Q Consensus 367 L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~--L~~L~ 427 (835)
|++++|.+++. +...+......+++|++|++++ |.+++.+...+..+..... ++.+.
T Consensus 216 L~Ls~N~i~~~---g~~~l~~~L~~~~~L~~L~Ls~-N~i~~~g~~~L~~~~~~~~~~L~~l~ 274 (372)
T 3un9_A 216 LNVAYNGAGDT---AALALARAAREHPSLELLHLYF-NELSSEGRQVLRDLGGAAEGGARVVV 274 (372)
T ss_dssp EECCSSCCCHH---HHHHHHHHHHHCSSCCEEECTT-SSCCHHHHHHHHHCC------CEEEC
T ss_pred EECCCCCCCHH---HHHHHHHHHHhCCCCCEEeccC-CCCCHHHHHHHHHHhcCCCccchhhH
Confidence 88888888763 2333444444678899999999 5898888777765433332 55554
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=123.79 Aligned_cols=61 Identities=15% Similarity=0.146 Sum_probs=38.3
Q ss_pred HHHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEecc
Q 003270 117 KAVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEIT 179 (835)
Q Consensus 117 ~~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 179 (835)
.+|..|.+|+.+.+.. .++.....+|.+|++|+.+++.++ ++.--...+.++.+|+.+.+.
T Consensus 65 ~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p 125 (394)
T 4fs7_A 65 AAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP 125 (394)
T ss_dssp TTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred HHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence 4677788888888864 355555667778888888887654 222122345566666665554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.11 E-value=6.8e-11 Score=112.90 Aligned_cols=118 Identities=18% Similarity=0.130 Sum_probs=64.9
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
+.+|..+. .+|++|++++| .+........+..+++|++|++++|...+.. +..+..+++|++|++++|++++++.
T Consensus 21 ~~ip~~~~--~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~ 96 (192)
T 1w8a_A 21 KEIPRDIP--LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp SSCCSCCC--TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CcCccCCC--CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCCCCCcC-HhHcCCcccCCEEECCCCcCCccCHH
Confidence 44554332 36677777776 3432111123556666666666666544322 4456666666666666666665443
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
.|..+++|++|++++|+ +++..+..+ ..+++|+.|++++|.+.
T Consensus 97 ~~~~l~~L~~L~L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 97 MFLGLHQLKTLNLYDNQ-ISCVMPGSF---EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSTTCTTCCEEECCSSC-CCEECTTSS---TTCTTCCEEECTTCCBC
T ss_pred HhcCCCCCCEEECCCCc-CCeeCHHHh---hcCCCCCEEEeCCCCcc
Confidence 35566666666666665 555444332 45566666666666554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.08 E-value=5e-11 Score=113.83 Aligned_cols=128 Identities=20% Similarity=0.162 Sum_probs=104.9
Q ss_pred ceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCc-hHHHhccccccEEec
Q 003270 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNL-EPVFESCLQLKVLKL 607 (835)
Q Consensus 529 ~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l-~~~~~~~~~L~~L~l 607 (835)
+.++++++ +++. +|..+ .++|++|++++|..........+..+++|++|++++|.++++ |..|..+++|++|++
T Consensus 11 ~~l~~s~~-~l~~--ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 85 (192)
T 1w8a_A 11 TTVDCTGR-GLKE--IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85 (192)
T ss_dssp TEEECTTS-CCSS--CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CcCc--CccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEEC
Confidence 67899987 5543 55433 238999999999865443112489999999999999999997 568999999999999
Q ss_pred ccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCCC
Q 003270 608 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGNM 666 (835)
Q Consensus 608 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 666 (835)
++|. +++..+..+ ..+++|++|++++|++++ ..+..+..+++|++|++++|+-.
T Consensus 86 s~N~-l~~~~~~~~---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 86 GENK-IKEISNKMF---LGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CSCC-CCEECSSSS---TTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCBC
T ss_pred CCCc-CCccCHHHh---cCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCCcc
Confidence 9998 887765543 789999999999999987 56778889999999999999743
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.07 E-value=8.5e-12 Score=120.07 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=69.1
Q ss_pred HHhhCCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEE
Q 003270 118 AVSLLRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLS 197 (835)
Q Consensus 118 ~l~~~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~ 197 (835)
.+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+++|++|++++|.+..+
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l----------- 108 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL----------- 108 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-----------
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-----------
Confidence 55555555555555555554 33 4455555555555555543 3444333344444444444433321
Q ss_pred ecccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHH---------HHHHHhCCCCcEE
Q 003270 198 LKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESL---------REIALSCANLRIL 268 (835)
Q Consensus 198 l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~---------~~~~~~~~~L~~L 268 (835)
..+..+++|++|++++| .+++......+..+++|++|++++|. +.+..+ ..+...+++|+.|
T Consensus 109 -------~~~~~l~~L~~L~l~~N-~i~~~~~~~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 109 -------SGIEKLVNLRVLYMSNN-KITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp -------HHHHHHHHSSEEEESEE-ECCCHHHHHHHTTTTTCSEEEECSCH-HHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred -------CccccCCCCCEEECCCC-cCCchhHHHHHhcCCCCCEEEecCCc-cccccccccchHHHHHHHHHhCCCcEEE
Confidence 24566677777777776 35532222456777777777777776 543322 1222366666666
Q ss_pred e
Q 003270 269 N 269 (835)
Q Consensus 269 ~ 269 (835)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.06 E-value=2.2e-10 Score=109.23 Aligned_cols=115 Identities=20% Similarity=0.197 Sum_probs=67.1
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
..+|..+ .++|++|++++| .++ .++..+..+++|+.|++++|..... .+..|..+++|++|++++|.+++++.
T Consensus 23 ~~ip~~~--~~~l~~L~L~~n-~i~--~ip~~~~~l~~L~~L~Ls~N~i~~i-~~~~f~~l~~L~~L~Ls~N~l~~i~~~ 96 (193)
T 2wfh_A 23 KVLPKGI--PRDVTELYLDGN-QFT--LVPKELSNYKHLTLIDLSNNRISTL-SNQSFSNMTQLLTLILSYNRLRCIPPR 96 (193)
T ss_dssp SSCCSCC--CTTCCEEECCSS-CCC--SCCGGGGGCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CcCCCCC--CCCCCEEECCCC-cCc--hhHHHhhcccCCCEEECCCCcCCEe-CHhHccCCCCCCEEECCCCccCEeCHH
Confidence 4444433 256777777776 444 2445566666666666666664432 23456666666666666666666544
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCccc
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 640 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~ 640 (835)
.|..+++|++|++++|. ++...... +..+++|+.|++++|.+
T Consensus 97 ~f~~l~~L~~L~L~~N~-l~~~~~~~---~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 97 TFDGLKSLRLLSLHGND-ISVVPEGA---FNDLSALSHLAIGANPL 138 (193)
T ss_dssp TTTTCTTCCEEECCSSC-CCBCCTTT---TTTCTTCCEEECCSSCE
T ss_pred HhCCCCCCCEEECCCCC-CCeeChhh---hhcCccccEEEeCCCCe
Confidence 56666666666666666 55443332 24556666666666655
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-10 Score=109.47 Aligned_cols=125 Identities=22% Similarity=0.181 Sum_probs=103.5
Q ss_pred ceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEec
Q 003270 529 TSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKL 607 (835)
Q Consensus 529 ~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l 607 (835)
+.++++++ +++. +|..+ .++|++|++++|..... +..+..+++|+.|++++|.+++++. .|.++++|++|++
T Consensus 13 ~~l~~~~~-~l~~--ip~~~--~~~l~~L~L~~n~i~~i--p~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~L 85 (193)
T 2wfh_A 13 TVVRCSNK-GLKV--LPKGI--PRDVTELYLDGNQFTLV--PKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLIL 85 (193)
T ss_dssp TEEECTTS-CCSS--CCSCC--CTTCCEEECCSSCCCSC--CGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CEEEcCCC-CCCc--CCCCC--CCCCCEEECCCCcCchh--HHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEEC
Confidence 56888887 4543 55432 36899999999986533 5789999999999999999999765 7999999999999
Q ss_pred ccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 608 QACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 608 ~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
++|. +++..+..+ ..+++|+.|++++|+++. ..+..|..+++|++|++++|+-
T Consensus 86 s~N~-l~~i~~~~f---~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~~ 138 (193)
T 2wfh_A 86 SYNR-LRCIPPRTF---DGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGANPL 138 (193)
T ss_dssp CSSC-CCBCCTTTT---TTCTTCCEEECCSSCCCB-CCTTTTTTCTTCCEEECCSSCE
T ss_pred CCCc-cCEeCHHHh---CCCCCCCEEECCCCCCCe-eChhhhhcCccccEEEeCCCCe
Confidence 9998 888766554 789999999999999986 3445688899999999999974
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.1e-09 Score=114.89 Aligned_cols=61 Identities=18% Similarity=0.273 Sum_probs=38.9
Q ss_pred eeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecC
Q 003270 357 MVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDN 430 (835)
Q Consensus 357 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~ 430 (835)
.+.+|++|+.+++..|.++......+ .+.+|+.+.+.+ .++.....+| .+|++|+.+.+..
T Consensus 175 aF~~c~~L~~l~l~~n~l~~I~~~aF--------~~~~L~~l~lp~--~l~~I~~~aF---~~~~~L~~l~l~~ 235 (401)
T 4fdw_A 175 IFYYCYNLKKADLSKTKITKLPASTF--------VYAGIEEVLLPV--TLKEIGSQAF---LKTSQLKTIEIPE 235 (401)
T ss_dssp TTTTCTTCCEEECTTSCCSEECTTTT--------TTCCCSEEECCT--TCCEECTTTT---TTCTTCCCEECCT
T ss_pred HhhCcccCCeeecCCCcceEechhhE--------eecccCEEEeCC--chheehhhHh---hCCCCCCEEecCC
Confidence 46677777777777766654332221 346777777765 4666655666 6777777777764
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.01 E-value=3.1e-10 Score=131.39 Aligned_cols=112 Identities=18% Similarity=0.063 Sum_probs=54.2
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..++.|+.|++++|.+ ..+|..+..+++|++|+|++| .++ .+|..+..+++|+.|+|++|... .. +
T Consensus 220 ~~~l~~L~~L~Ls~n~l--------~~l~~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~l~-~l-p 286 (727)
T 4b8c_D 220 KYDDQLWHALDLSNLQI--------FNISANIFKYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNRLT-SL-P 286 (727)
T ss_dssp --CCCCCCEEECTTSCC--------SCCCGGGGGCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSCCS-SC-C
T ss_pred hccCCCCcEEECCCCCC--------CCCChhhcCCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCcCC-cc-C
Confidence 34444455555555544 334444444555555555554 333 24444455555555555555533 11 3
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNT 616 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~ 616 (835)
..++.+++|++|+|++|.++.+|..|+.+++|+.|+|++|+ +++.
T Consensus 287 ~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~-l~~~ 331 (727)
T 4b8c_D 287 AELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNP-LEKQ 331 (727)
T ss_dssp SSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSC-CCSH
T ss_pred hhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCc-cCCC
Confidence 44555555555555555555555555555555555555554 4443
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=99.00 E-value=4e-10 Score=102.86 Aligned_cols=103 Identities=15% Similarity=0.211 Sum_probs=79.1
Q ss_pred ccccccccCCCCccccccCcccccCccceEeccCCCCccccccccccccEEecccccchhhhhh---cCCccceeecccC
Q 003270 706 LLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNLSNCCSLETLKL---DCPKLTSLFLQSC 782 (835)
Q Consensus 706 ~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~c~~l~~l~~---~~~~L~~L~l~~~ 782 (835)
.|+.|++++|. +++..+..+..|++|++|++++|..+++. .++.+.. .+++|++|+|++|
T Consensus 62 ~L~~LDLs~~~-Itd~GL~~L~~~~~L~~L~L~~C~~ItD~----------------gL~~L~~~~~~~~~L~~L~Ls~C 124 (176)
T 3e4g_A 62 KIQAIDATDSC-IMSIGFDHMEGLQYVEKIRLCKCHYIEDG----------------CLERLSQLENLQKSMLEMEIISC 124 (176)
T ss_dssp CEEEEEEESCC-CCGGGGGGGTTCSCCCEEEEESCTTCCHH----------------HHHHHHTCHHHHHHCCEEEEESC
T ss_pred eEeEEeCcCCC-ccHHHHHHhcCCCCCCEEEeCCCCccCHH----------------HHHHHHhcccccCCCCEEEcCCC
Confidence 47777777776 66666666666777777777777666654 3455553 2578999999999
Q ss_pred c-CChhHHHHHHhcCCCcceeecccccCCCchH--HHHHHHhCCcch
Q 003270 783 N-IDEEGVESAITQCGMLETLDVRFCPKICSTS--MGRLRAACPSLK 826 (835)
Q Consensus 783 ~-i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~--~~~~~~~~p~l~ 826 (835)
. |||.++.. +..|++|++|++++|+.+++.+ ...+...+|+++
T Consensus 125 ~~ITD~Gl~~-L~~~~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 125 GNVTDKGIIA-LHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCHHHHHH-GGGCTTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CcCCHHHHHH-HhcCCCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 8 99999987 6789999999999999999975 567777788765
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=98.98 E-value=1.6e-10 Score=133.87 Aligned_cols=137 Identities=25% Similarity=0.183 Sum_probs=106.8
Q ss_pred ccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHH
Q 003270 517 VLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVF 596 (835)
Q Consensus 517 ~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~ 596 (835)
..+..+..+++|+.|+|++| .+. .++..+..+++|++|+|++|... .. +..++.+++|+.|+|++|.++.+|..+
T Consensus 215 ~~~~~~~~l~~L~~L~Ls~n-~l~--~l~~~~~~l~~L~~L~Ls~N~l~-~l-p~~~~~l~~L~~L~Ls~N~l~~lp~~~ 289 (727)
T 4b8c_D 215 MPKDSKYDDQLWHALDLSNL-QIF--NISANIFKYDFLTRLYLNGNSLT-EL-PAEIKNLSNLRVLDLSHNRLTSLPAEL 289 (727)
T ss_dssp -------CCCCCCEEECTTS-CCS--CCCGGGGGCCSCSCCBCTTSCCS-CC-CGGGGGGTTCCEEECTTSCCSSCCSSG
T ss_pred cChhhhccCCCCcEEECCCC-CCC--CCChhhcCCCCCCEEEeeCCcCc-cc-ChhhhCCCCCCEEeCcCCcCCccChhh
Confidence 34667888999999999998 454 37767779999999999999866 33 678999999999999999999999999
Q ss_pred hccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCC-ccEEEccCCC
Q 003270 597 ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTH-LTHVSLNGCG 664 (835)
Q Consensus 597 ~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~-L~~L~l~~~~ 664 (835)
..+++|++|+|++|. ++.. +.. ++.+++|+.|++++|.+++ .++..+..+.. +..+++++|.
T Consensus 290 ~~l~~L~~L~L~~N~-l~~l-p~~---~~~l~~L~~L~L~~N~l~~-~~p~~~~~~~~~~~~l~l~~N~ 352 (727)
T 4b8c_D 290 GSCFQLKYFYFFDNM-VTTL-PWE---FGNLCNLQFLGVEGNPLEK-QFLKILTEKSVTGLIFYLRDNR 352 (727)
T ss_dssp GGGTTCSEEECCSSC-CCCC-CSS---TTSCTTCCCEECTTSCCCS-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred cCCCCCCEEECCCCC-CCcc-Chh---hhcCCCccEEeCCCCccCC-CChHHHhhcchhhhHHhhccCc
Confidence 999999999999997 7744 333 4889999999999999998 57766654422 2235666664
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.95 E-value=5.6e-10 Score=105.09 Aligned_cols=129 Identities=19% Similarity=0.105 Sum_probs=75.9
Q ss_pred CcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhc
Q 003270 497 LSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 576 (835)
Q Consensus 497 L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 576 (835)
.+.++++++.+ ..+|..+ .++|++|++++| .++. ..+..+..+++|++|++++|..... .+..+..+
T Consensus 9 ~~~l~~~~~~l--------~~~p~~~--~~~l~~L~l~~n-~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l 75 (177)
T 2o6r_A 9 GTEIRCNSKGL--------TSVPTGI--PSSATRLELESN-KLQS-LPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKL 75 (177)
T ss_dssp TTEEECCSSCC--------SSCCTTC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTC
T ss_pred CCEEEecCCCC--------ccCCCCC--CCCCcEEEeCCC-cccE-eCHHHhcCcccccEEECCCCcceEe-ChhHccCC
Confidence 34555555555 4444332 367777777776 3432 2223356667777777777764432 23445667
Q ss_pred cccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 577 QNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
++|++|++++|.+++++. .+..+++|++|++++|. +++..... +..+++|+.|++++|.+..
T Consensus 76 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~---~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 76 TKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGI---FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTT---TTTCTTCCEEECCSSCBCC
T ss_pred CccCEEECCCCCccccCHHHhhCCcccCEEECcCCc-ceEeCHHH---hcCCcccCEEEecCCCeec
Confidence 777777777777776554 45666777777777765 65443322 2456667777777766654
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=98.94 E-value=6.2e-09 Score=111.25 Aligned_cols=151 Identities=13% Similarity=0.161 Sum_probs=76.5
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
|.+|++|+.++++.|.++ .++...-.+.+|+.+.+..+ +.. --...|.+|++|+.+.+.++ +..++.
T Consensus 176 F~~c~~L~~l~l~~n~l~--------~I~~~aF~~~~L~~l~lp~~--l~~-I~~~aF~~~~~L~~l~l~~~--l~~I~~ 242 (401)
T 4fdw_A 176 FYYCYNLKKADLSKTKIT--------KLPASTFVYAGIEEVLLPVT--LKE-IGSQAFLKTSQLKTIEIPEN--VSTIGQ 242 (401)
T ss_dssp TTTCTTCCEEECTTSCCS--------EECTTTTTTCCCSEEECCTT--CCE-ECTTTTTTCTTCCCEECCTT--CCEECT
T ss_pred hhCcccCCeeecCCCcce--------EechhhEeecccCEEEeCCc--hhe-ehhhHhhCCCCCCEEecCCC--ccCccc
Confidence 666777777777666653 23332222566777776642 221 11233556666666666653 334444
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccc-----hhhHHHHHhcCCCCCccEEeCCCcccchHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLT-----NTSLESLYKKGSLPALQELDLSYGTLCQSA 644 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~-----~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~ 644 (835)
.+|.+ .+|+.+.+. +.+..++. +|.+|++|+++.+.++. +. ..... +|..|++|+.+++.++ +.. .
T Consensus 243 ~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~-~~~~~~~~I~~~---aF~~c~~L~~l~l~~~-i~~-I 314 (401)
T 4fdw_A 243 EAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGST-FNDDPEAMIHPY---CLEGCPKLARFEIPES-IRI-L 314 (401)
T ss_dssp TTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSC-CCCCTTCEECTT---TTTTCTTCCEECCCTT-CCE-E
T ss_pred ccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCcc-ccCCcccEECHH---HhhCCccCCeEEeCCc-eEE-E
Confidence 55555 566666663 33444433 56666666666666544 22 11111 2345555555555532 222 1
Q ss_pred HHHHHhhCCCccEEEccC
Q 003270 645 IEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 645 ~~~~l~~~~~L~~L~l~~ 662 (835)
-...|.+|++|+++.+..
T Consensus 315 ~~~aF~~c~~L~~l~lp~ 332 (401)
T 4fdw_A 315 GQGLLGGNRKVTQLTIPA 332 (401)
T ss_dssp CTTTTTTCCSCCEEEECT
T ss_pred hhhhhcCCCCccEEEECc
Confidence 124455555555555543
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=98.93 E-value=1.6e-09 Score=102.03 Aligned_cols=127 Identities=22% Similarity=0.167 Sum_probs=75.7
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~ 606 (835)
.+.++++++ +++. ++. ...++|++|++++|.... ..+..+..+++|++|++++|.+++++. .+..+++|++|+
T Consensus 9 ~~~l~~~~~-~l~~--~p~--~~~~~l~~L~l~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSK-GLTS--VPT--GIPSSATRLELESNKLQS-LPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSS-CCSS--CCT--TCCTTCSEEECCSSCCCC-CCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEecCC-CCcc--CCC--CCCCCCcEEEeCCCcccE-eCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEE
Confidence 355666665 3432 332 123567777777766443 223445667777777777777776554 456677777777
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
+++|. +++.....+ ..+++|+.|++++|+++. ..+..+..+++|++|++++|+-
T Consensus 83 l~~N~-l~~~~~~~~---~~l~~L~~L~l~~N~l~~-~~~~~~~~l~~L~~L~l~~N~~ 136 (177)
T 2o6r_A 83 LHENK-LQSLPNGVF---DKLTQLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPW 136 (177)
T ss_dssp CCSSC-CCCCCTTTT---TTCTTCCEEECCSSCCSC-CCTTTTTTCTTCCEEECCSSCB
T ss_pred CCCCC-ccccCHHHh---hCCcccCEEECcCCcceE-eCHHHhcCCcccCEEEecCCCe
Confidence 77766 665443332 556677777777776664 2334456667777777777653
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.92 E-value=2.5e-08 Score=107.16 Aligned_cols=127 Identities=16% Similarity=0.219 Sum_probs=58.2
Q ss_pred ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcc
Q 003270 521 AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESC 599 (835)
Q Consensus 521 ~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~ 599 (835)
.|.+|.+|+.+.+... +.. --...+.+|++|+.+.+... +..++..+|.+|++|+++++..+ ++.+.. +|.+|
T Consensus 260 aF~~c~~L~~i~lp~~--~~~-I~~~aF~~c~~L~~i~l~~~--i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C 333 (394)
T 4gt6_A 260 AFDSCAYLASVKMPDS--VVS-IGTGAFMNCPALQDIEFSSR--ITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC 333 (394)
T ss_dssp TTTTCSSCCEEECCTT--CCE-ECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred eeeecccccEEecccc--cce-ecCcccccccccccccCCCc--ccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence 3455555555555542 111 01123445555666555421 33333455666666666666543 333333 56666
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
.+|+++.|..+ ++...... |.+|++|+.+++.++... ...+..+.+|+.+.+..
T Consensus 334 ~~L~~i~ip~s--v~~I~~~a---F~~C~~L~~i~~~~~~~~----~~~~~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 334 EQLERIAIPSS--VTKIPESA---FSNCTALNNIEYSGSRSQ----WNAISTDSGLQNLPVAP 387 (394)
T ss_dssp TTCCEEEECTT--CCBCCGGG---GTTCTTCCEEEESSCHHH----HHTCBCCCCC-------
T ss_pred CCCCEEEECcc--cCEEhHhH---hhCCCCCCEEEECCceee----hhhhhccCCCCEEEeCC
Confidence 66666666432 33333322 355666666666655321 13344555666665543
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.2e-08 Score=105.42 Aligned_cols=11 Identities=18% Similarity=0.510 Sum_probs=5.3
Q ss_pred CCCCCccEEEe
Q 003270 418 GGCPMLKSLVL 428 (835)
Q Consensus 418 ~~~~~L~~L~l 428 (835)
..|.+|+.+.+
T Consensus 134 ~~c~~L~~i~l 144 (394)
T 4gt6_A 134 HHCEELDTVTI 144 (394)
T ss_dssp TTCTTCCEEEC
T ss_pred hhhcccccccc
Confidence 44444554444
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.74 E-value=5.1e-08 Score=91.91 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=65.9
Q ss_pred hhhcCCCccEEeccCCCCcCchhhH----hhhhccccceeeecCccccC-----chHHHhccccccEEecccccccchhh
Q 003270 547 TTTSCPLIESLILMSCQSIGPDGLY----SLRSLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQACKYLTNTS 617 (835)
Q Consensus 547 ~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~Ls~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~ 617 (835)
.+...++|++|++++|..+++.+.. .+...++|++|+|++|.+.. +...+...++|++|+|++|. +++.+
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~-i~~~g 109 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 109 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCc-CCHHH
Confidence 3444555555555555223333322 23344566666666666652 33345556667777777766 66665
Q ss_pred HHHHHh-cCCCCCccEEeC--CCcccchHH---HHHHHhhCCCccEEEccCCC
Q 003270 618 LESLYK-KGSLPALQELDL--SYGTLCQSA---IEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 618 ~~~l~~-~~~~~~L~~L~l--~~n~~~~~~---~~~~l~~~~~L~~L~l~~~~ 664 (835)
...+.. +...++|++|++ ++|.+++.+ +.+.+...++|++|++++|.
T Consensus 110 ~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 110 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence 555532 355566777777 667766543 34555566677777777664
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1.6e-08 Score=92.32 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=63.5
Q ss_pred cccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhc----cccceeeecCcc-ccC-
Q 003270 518 LSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL----QNLTMLDLSYTF-LTN- 591 (835)
Q Consensus 518 l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~Ls~~~-~~~- 591 (835)
+|.....-..|++||+++|. +++.++.. +..|++|++|++++|..+++.+...+..+ ++|++|+|++|. +++
T Consensus 53 LP~~~~~~~~L~~LDLs~~~-Itd~GL~~-L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~ 130 (176)
T 3e4g_A 53 LPTGPLDKYKIQAIDATDSC-IMSIGFDH-MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDK 130 (176)
T ss_dssp SCCCSTTCCCEEEEEEESCC-CCGGGGGG-GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHH
T ss_pred CCcccCCCceEeEEeCcCCC-ccHHHHHH-hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHH
Confidence 34433334579999999995 88887765 47899999999999998888877777764 356666665553 442
Q ss_pred chHHHhccccccEEecccccccchh
Q 003270 592 LEPVFESCLQLKVLKLQACKYLTNT 616 (835)
Q Consensus 592 l~~~~~~~~~L~~L~l~~~~~l~~~ 616 (835)
--..+..+++|++|++++|+.+++.
T Consensus 131 Gl~~L~~~~~L~~L~L~~c~~Itd~ 155 (176)
T 3e4g_A 131 GIIALHHFRNLKYLFLSDLPGVKEK 155 (176)
T ss_dssp HHHHGGGCTTCCEEEEESCTTCCCH
T ss_pred HHHHHhcCCCCCEEECCCCCCCCch
Confidence 1123344555555555555555543
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.70 E-value=1.5e-08 Score=94.29 Aligned_cols=104 Identities=25% Similarity=0.202 Sum_probs=60.1
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~ 606 (835)
.+.+++++| .++. +|..+ .++|++|++++|...+.. +..|..+++|++|++++|++++++. .|..+++|++|+
T Consensus 11 ~~~l~~s~n-~l~~--ip~~~--~~~l~~L~L~~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~ 84 (170)
T 3g39_A 11 GTTVDCSGK-SLAS--VPTGI--PTTTQVLYLYDNQITKLE-PGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLS 84 (170)
T ss_dssp TTEEECTTS-CCSS--CCSCC--CTTCSEEECCSSCCCCCC-TTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCEEEeCCC-CcCc--cCccC--CCCCcEEEcCCCcCCccC-hhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEE
Confidence 345555554 3332 33222 245566666665543322 4456667777777777777776655 456677777777
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
+++|. +++.....+ ..+++|+.|++++|.+.
T Consensus 85 L~~N~-l~~~~~~~~---~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 85 LNDNQ-LKSIPRGAF---DNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCSSC-CCCCCTTTT---TTCTTCCEEECCSSCBC
T ss_pred CCCCc-cCEeCHHHh---cCCCCCCEEEeCCCCCC
Confidence 77766 665544332 55667777777777654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.70 E-value=3.6e-08 Score=103.23 Aligned_cols=207 Identities=16% Similarity=0.220 Sum_probs=118.8
Q ss_pred HHHHHHHh--cCCCeeEEEccCCcchh--------hHHHHHHhhCCcCcEEEcCCcccC---------hhhHHhhcCCCC
Q 003270 88 EQFEDVCQ--RYPNATEVNIYGAPAIH--------LLVMKAVSLLRNLEALTLGRGQLG---------DAFFHALADCSM 148 (835)
Q Consensus 88 ~~~~~~~~--~~~~l~~L~l~~~~~~~--------~~~~~~l~~~~~L~~L~l~~~~i~---------~~~~~~l~~~~~ 148 (835)
+.+.+++. ....++.|.+..+. .. ..+..+...+++|+.|.+...... +.+...+..+++
T Consensus 95 ~~~~~fl~~~~~~~v~~L~lg~~~-~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~ 173 (362)
T 2ra8_A 95 NLMDKILKDKKLPSLKQITIGXWG-YEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPL 173 (362)
T ss_dssp CHHHHHHHCTTGGGCSEEEECCCC-SSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTT
T ss_pred HHHHHHhcCCCchhcceEEEcccc-cCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCC
Confidence 34555654 33457888887532 22 123334567889999999754321 124556678899
Q ss_pred CCEEEecCCCCCcccccccccCCcccEEeccCcccccc-----c-cCCCCCcEEEeccc--c------h---HHHh--hc
Q 003270 149 LKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRV-----S-IRCPQLEHLSLKRS--N------M---AQAV--LN 209 (835)
Q Consensus 149 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-----~-~~l~~L~~L~l~~~--~------i---~~~~--~~ 209 (835)
|+.|+++++.- -.++. + .+++|++|++..+.+..- . ..+|+|++|+|+.+ . + ...+ ..
T Consensus 174 L~~L~L~g~~~-l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~ 250 (362)
T 2ra8_A 174 LNNLKIKGTNN-LSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDR 250 (362)
T ss_dssp CCEEEEECCBT-CBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTT
T ss_pred CcEEEEeCCCC-ceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCC
Confidence 99999988731 12333 2 377888888887776431 1 25778888877521 1 1 1122 24
Q ss_pred CCCCcEEeecCCCCCCHHHHHHHH--hcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCccccCCCCCc
Q 003270 210 CPLLHLLDIASCHKLSDAAIRLAA--TSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLT 287 (835)
Q Consensus 210 ~~~L~~L~l~~~~~l~~~~l~~~~--~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~ 287 (835)
+|+|++|++.+| .+.+......+ ..+++|++|+|+.|. +++.+...+... +..+++|+
T Consensus 251 ~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~------------------L~~l~~L~ 310 (362)
T 2ra8_A 251 FPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH------------------VDKIKHLK 310 (362)
T ss_dssp CTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT------------------HHHHTTCS
T ss_pred CCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh------------------cccCCcce
Confidence 677777777776 35543322222 245677777777776 776665555411 11223444
Q ss_pred EEecCCCCCCChhhHHHhhhccCccEEEccCCC
Q 003270 288 VLQLHSCEGITSASMAAISHSYMLEVLELDNCN 320 (835)
Q Consensus 288 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 320 (835)
.|+++.| .+++.....+...- ...++++.++
T Consensus 311 ~L~L~~n-~i~d~~~~~l~~al-g~~~~~~~~~ 341 (362)
T 2ra8_A 311 FINMKYN-YLSDEMKKELQKSL-PMKIDVSDSQ 341 (362)
T ss_dssp EEECCSB-BCCHHHHHHHHHHC-CSEEECCSBC
T ss_pred EEECCCC-cCCHHHHHHHHHHc-CCEEEecCCc
Confidence 4444443 67777777666522 3456776654
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.68 E-value=2e-08 Score=93.69 Aligned_cols=85 Identities=22% Similarity=0.158 Sum_probs=49.4
Q ss_pred CCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCc
Q 003270 552 PLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPAL 630 (835)
Q Consensus 552 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L 630 (835)
++|++|++++|...+.. +..+..+++|++|+|++|+++++|. .|..+++|++|++++|. +++..... +..+++|
T Consensus 33 ~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~-l~~l~~~~---~~~l~~L 107 (174)
T 2r9u_A 33 TDKQRLWLNNNQITKLE-PGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH-LKSIPRGA---FDNLKSL 107 (174)
T ss_dssp TTCSEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTTT---TTTCTTC
T ss_pred CCCcEEEeCCCCccccC-HHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc-cceeCHHH---hccccCC
Confidence 44555555555533321 3456666666666666666666655 34566666666666666 55443322 2556666
Q ss_pred cEEeCCCcccc
Q 003270 631 QELDLSYGTLC 641 (835)
Q Consensus 631 ~~L~l~~n~~~ 641 (835)
+.|++++|.+.
T Consensus 108 ~~L~L~~N~~~ 118 (174)
T 2r9u_A 108 THIYLYNNPWD 118 (174)
T ss_dssp SEEECCSSCBC
T ss_pred CEEEeCCCCcc
Confidence 66666666654
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-08 Score=104.11 Aligned_cols=139 Identities=22% Similarity=0.276 Sum_probs=71.0
Q ss_pred ccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh--hccccceeeecC--cc------
Q 003270 519 SDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR--SLQNLTMLDLSY--TF------ 588 (835)
Q Consensus 519 ~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~l~~L~~L~Ls~--~~------ 588 (835)
+..+..+|+|+.|.+++|..+. ++. + ..++|++|++..|.. ...+...+. .+++|+.|+|+. +.
T Consensus 165 ~~ll~~~P~L~~L~L~g~~~l~---l~~-~-~~~~L~~L~L~~~~l-~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~ 238 (362)
T 2ra8_A 165 SPVLDAMPLLNNLKIKGTNNLS---IGK-K-PRPNLKSLEIISGGL-PDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGD 238 (362)
T ss_dssp HHHHHTCTTCCEEEEECCBTCB---CCS-C-BCTTCSEEEEECSBC-CHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSC
T ss_pred HHHHhcCCCCcEEEEeCCCCce---ecc-c-cCCCCcEEEEecCCC-ChHHHHHHHHccCCCCcEEEEeccccccccchh
Confidence 3344455666666666552221 222 1 256666666665553 233233443 456666666642 11
Q ss_pred ccCchHHH--hccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHH---HHHHhhCCCccEEEccCC
Q 003270 589 LTNLEPVF--ESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAI---EELLAYCTHLTHVSLNGC 663 (835)
Q Consensus 589 ~~~l~~~~--~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~---~~~l~~~~~L~~L~l~~~ 663 (835)
+..+...+ ..+++|+.|.+.+|. +.+.....+.....+++|++|+++.|.+.+.+. ...+..+++|++|++++|
T Consensus 239 ~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n 317 (362)
T 2ra8_A 239 MNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN 317 (362)
T ss_dssp GGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB
T ss_pred HHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC
Confidence 11111222 235677777776666 555444444333456667777777776666332 222345666777777666
Q ss_pred C
Q 003270 664 G 664 (835)
Q Consensus 664 ~ 664 (835)
.
T Consensus 318 ~ 318 (362)
T 2ra8_A 318 Y 318 (362)
T ss_dssp B
T ss_pred c
Confidence 3
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.8e-08 Score=91.13 Aligned_cols=103 Identities=14% Similarity=0.082 Sum_probs=80.4
Q ss_pred cccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhcc
Q 003270 498 STLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQ 577 (835)
Q Consensus 498 ~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 577 (835)
+.++++++.+ +.+|..+. ++|++|++++| .+.. ..+..+..+++|++|++++|..... ....|..++
T Consensus 15 ~~l~~~~n~l--------~~iP~~~~--~~L~~L~Ls~N-~l~~-~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~ 81 (174)
T 2r9u_A 15 TLVNCQNIRL--------ASVPAGIP--TDKQRLWLNNN-QITK-LEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLT 81 (174)
T ss_dssp SEEECCSSCC--------SSCCSCCC--TTCSEEECCSS-CCCC-CCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCT
T ss_pred cEEEeCCCCC--------CccCCCcC--CCCcEEEeCCC-Cccc-cCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcc
Confidence 4556666666 66666553 78999999998 4543 3356678899999999999976543 244578899
Q ss_pred ccceeeecCccccCchH-HHhccccccEEecccccccc
Q 003270 578 NLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~ 614 (835)
+|++|+|++|+++++|. .|..+++|+.|++++|+ +.
T Consensus 82 ~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~-~~ 118 (174)
T 2r9u_A 82 QLTQLDLNDNHLKSIPRGAFDNLKSLTHIYLYNNP-WD 118 (174)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC-BC
T ss_pred hhhEEECCCCccceeCHHHhccccCCCEEEeCCCC-cc
Confidence 99999999999999887 48899999999999998 65
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=98.61 E-value=5.1e-08 Score=90.66 Aligned_cols=103 Identities=15% Similarity=0.035 Sum_probs=80.4
Q ss_pred cccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhcc
Q 003270 498 STLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQ 577 (835)
Q Consensus 498 ~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~ 577 (835)
+.++++++.+ ..+|..+ .++|++|++++| .++. ..+..+..+++|++|++++|..... .+..|..++
T Consensus 12 ~~l~~s~n~l--------~~ip~~~--~~~l~~L~L~~N-~i~~-~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~ 78 (170)
T 3g39_A 12 TTVDCSGKSL--------ASVPTGI--PTTTQVLYLYDN-QITK-LEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLT 78 (170)
T ss_dssp TEEECTTSCC--------SSCCSCC--CTTCSEEECCSS-CCCC-CCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCT
T ss_pred CEEEeCCCCc--------CccCccC--CCCCcEEEcCCC-cCCc-cChhhhcCcccCCEEECCCCCcCcc-ChhhccCCC
Confidence 4566666666 5566554 378899999998 4543 2355678899999999999985543 355678999
Q ss_pred ccceeeecCccccCchH-HHhccccccEEecccccccc
Q 003270 578 NLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 578 ~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~ 614 (835)
+|++|+|++|++++++. .|..+++|++|++++|+ ++
T Consensus 79 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~-~~ 115 (170)
T 3g39_A 79 QLTQLSLNDNQLKSIPRGAFDNLKSLTHIWLLNNP-WD 115 (170)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC-BC
T ss_pred CCCEEECCCCccCEeCHHHhcCCCCCCEEEeCCCC-CC
Confidence 99999999999999877 68899999999999998 65
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=5.9e-07 Score=84.60 Aligned_cols=50 Identities=12% Similarity=0.104 Sum_probs=28.6
Q ss_pred hhhHHHHHHhhCCcCcEEEcCCc-ccChh----hHHhhcCCCCCCEEEecCCCCC
Q 003270 111 IHLLVMKAVSLLRNLEALTLGRG-QLGDA----FFHALADCSMLKSLNVNDATLG 160 (835)
Q Consensus 111 ~~~~~~~~l~~~~~L~~L~l~~~-~i~~~----~~~~l~~~~~L~~L~l~~~~~~ 160 (835)
+...+...+...+.|++|++++| .+.+. +...+...++|++|++++|.+.
T Consensus 24 ~~~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~ 78 (185)
T 1io0_A 24 VEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 78 (185)
T ss_dssp HHHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence 44445556666666666666666 66644 3334445556666666666554
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.46 E-value=9.1e-07 Score=94.49 Aligned_cols=129 Identities=10% Similarity=0.115 Sum_probs=68.7
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCL 600 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~ 600 (835)
+..+.+|+.+.+..+ +.. .-...+.++..|+.+.+..+ +..++..++.++.+|+.+.+..+ +..++. .|.+|.
T Consensus 213 f~~~~~l~~i~~~~~--~~~-i~~~~f~~~~~L~~i~lp~~--v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~ 286 (379)
T 4h09_A 213 FSYGKNLKKITITSG--VTT-LGDGAFYGMKALDEIAIPKN--VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCS 286 (379)
T ss_dssp TTTCSSCSEEECCTT--CCE-ECTTTTTTCSSCCEEEECTT--CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCT
T ss_pred cccccccceeeeccc--eeE-EccccccCCccceEEEcCCC--ccEeCccccceeehhcccccccc-ceecccccccccc
Confidence 344555555555442 111 11223445566666666543 33444456666666666666543 333333 566677
Q ss_pred cccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 601 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
+|+++.+.++. ++...... |.+|.+|+.+++..+ +.. .-..+|.+|++|+++.+..
T Consensus 287 ~L~~i~l~~~~-i~~I~~~a---F~~c~~L~~i~lp~~-l~~-I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 287 NLTKVVMDNSA-IETLEPRV---FMDCVKLSSVTLPTA-LKT-IQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCCEEEECCTT-CCEECTTT---TTTCTTCCEEECCTT-CCE-ECTTTTTTCTTCCCCCCCT
T ss_pred ccccccccccc-cceehhhh---hcCCCCCCEEEcCcc-ccE-EHHHHhhCCCCCCEEEECC
Confidence 77777776544 44443332 356677777777543 211 1125567777777777754
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=98.43 E-value=2.9e-06 Score=90.53 Aligned_cols=129 Identities=13% Similarity=0.171 Sum_probs=74.1
Q ss_pred cccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccc
Q 003270 522 YINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCL 600 (835)
Q Consensus 522 ~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~ 600 (835)
+..+..+..+.+.... . ......+..+.+|+.+.+... +..++..++..+..|+.+.+..+ ++.+.. .|.+|.
T Consensus 190 ~~~~~~~~~~~~~~~~--~-~i~~~~f~~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~ 263 (379)
T 4h09_A 190 YPAAKTGTEFTIPSTV--K-TVTAYGFSYGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCT 263 (379)
T ss_dssp CCTTCCCSEEECCTTC--C-EECTTTTTTCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCT
T ss_pred ccccccccccccccce--e-EEeecccccccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccccceee
Confidence 3445555555554421 1 112233456667777777543 33444556777777777777654 444433 667777
Q ss_pred cccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccC
Q 003270 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNG 662 (835)
Q Consensus 601 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~ 662 (835)
+|+.+.+..+ ++..... ++..|++|+.+.+.++.+.. .-...|.+|++|+++.+..
T Consensus 264 ~l~~i~l~~~--i~~i~~~---aF~~c~~L~~i~l~~~~i~~-I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 264 ALKTLNFYAK--VKTVPYL---LCSGCSNLTKVVMDNSAIET-LEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp TCCEEEECCC--CSEECTT---TTTTCTTCCEEEECCTTCCE-ECTTTTTTCTTCCEEECCT
T ss_pred hhcccccccc--ceecccc---ccccccccccccccccccce-ehhhhhcCCCCCCEEEcCc
Confidence 7777777542 3433322 23667777777777665543 1235667777777777754
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.30 E-value=6.2e-07 Score=94.50 Aligned_cols=103 Identities=17% Similarity=0.056 Sum_probs=67.5
Q ss_pred ccccccc-eeEEEeecCCcccccccccCCCcceEeccc-CCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhc
Q 003270 499 TLGIEAL-HMVVLELKGCGVLSDAYINCPLLTSLDASF-CSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSL 576 (835)
Q Consensus 499 ~l~l~~~-~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~-~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l 576 (835)
.++.+++ .+ ..+|. +..+++|++|+|++ | .+.. ..+..+.++++|+.|+|++|...+ ..+..|.++
T Consensus 12 ~v~~~~~n~l--------~~ip~-l~~~~~L~~L~l~~~n-~l~~-~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~l 79 (347)
T 2ifg_A 12 GLRCTRDGAL--------DSLHH-LPGAENLTELYIENQQ-HLQH-LELRDLRGLGELRNLTIVKSGLRF-VAPDAFHFT 79 (347)
T ss_dssp CEECCSSCCC--------TTTTT-SCSCSCCSEEECCSCS-SCCE-ECGGGSCSCCCCSEEECCSSCCCE-ECTTGGGSC
T ss_pred EEEcCCCCCC--------CccCC-CCCCCCeeEEEccCCC-CCCC-cChhHhccccCCCEEECCCCccce-eCHHHhcCC
Confidence 3455555 55 56777 77778888888875 5 4542 223456777788888888776443 335567777
Q ss_pred cccceeeecCccccCchHHHhccccccEEecccccccc
Q 003270 577 QNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 577 ~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~ 614 (835)
++|+.|+|++|+++++|........|+.|++.+|+ +.
T Consensus 80 ~~L~~L~l~~N~l~~~~~~~~~~~~L~~l~l~~N~-~~ 116 (347)
T 2ifg_A 80 PRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNP-LH 116 (347)
T ss_dssp SCCCEEECCSSCCSCCCSTTTCSCCCCEEECCSSC-CC
T ss_pred cCCCEEeCCCCccceeCHHHcccCCceEEEeeCCC-cc
Confidence 78888888888777776633322337777777777 54
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=98.30 E-value=3.1e-07 Score=96.80 Aligned_cols=92 Identities=16% Similarity=0.156 Sum_probs=67.8
Q ss_pred hhhHHHHHHhhCCcCcEEEcCC-cccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccC
Q 003270 111 IHLLVMKAVSLLRNLEALTLGR-GQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIR 189 (835)
Q Consensus 111 ~~~~~~~~l~~~~~L~~L~l~~-~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~ 189 (835)
+.. +|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|.+++..+..+.++++|++|+|++|.+..+...
T Consensus 21 l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~ 98 (347)
T 2ifg_A 21 LDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (347)
T ss_dssp CTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred CCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHH
Confidence 443 445 77778888888885 888877777888888888888888888777777778888888888888887765421
Q ss_pred ---CCCCcEEEecccchH
Q 003270 190 ---CPQLEHLSLKRSNMA 204 (835)
Q Consensus 190 ---l~~L~~L~l~~~~i~ 204 (835)
...|+.|++.+|.+.
T Consensus 99 ~~~~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 99 TVQGLSLQELVLSGNPLH 116 (347)
T ss_dssp TTCSCCCCEEECCSSCCC
T ss_pred HcccCCceEEEeeCCCcc
Confidence 122777777766653
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=6.1e-05 Score=70.04 Aligned_cols=120 Identities=13% Similarity=0.158 Sum_probs=86.0
Q ss_pred hhhhhhcCCCccEEeccCCCCcCchhh----HhhhhccccceeeecCccccC-----chHHHhccccccEEecccccccc
Q 003270 544 LSATTTSCPLIESLILMSCQSIGPDGL----YSLRSLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 544 ~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~Ls~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~ 614 (835)
+...+..-+.|++|+++++..+++.|. +++..-+.|+.|+|++|.+.+ +...+..-..|++|+|++|. |+
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~-Ig 111 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT 111 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCc-CC
Confidence 444455566677777776544555543 344556788888888888873 56677778889999999988 88
Q ss_pred hhhHHHHHh-cCCCCCccEEeCCCc---ccchH---HHHHHHhhCCCccEEEccCCC
Q 003270 615 NTSLESLYK-KGSLPALQELDLSYG---TLCQS---AIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 615 ~~~~~~l~~-~~~~~~L~~L~l~~n---~~~~~---~~~~~l~~~~~L~~L~l~~~~ 664 (835)
+.+...+.. +..-..|++|++++| .+.+. .+.+.+..-+.|++|+++.+.
T Consensus 112 ~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 112 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 888777754 556677999999865 55543 366777888889999987653
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.78 E-value=4.3e-05 Score=75.43 Aligned_cols=83 Identities=27% Similarity=0.355 Sum_probs=55.5
Q ss_pred hhccccceeeecCccccCch---HHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch------HH
Q 003270 574 RSLQNLTMLDLSYTFLTNLE---PVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ------SA 644 (835)
Q Consensus 574 ~~l~~L~~L~Ls~~~~~~l~---~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~------~~ 644 (835)
.++++|++|+|++|.+++++ ..+..+++|+.|+|++|. +++. ..+..+..+ .|++|++++|.+++ ..
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~--~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y 242 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSE--RELDKIKGL-KLEELWLDGNSLCDTFRDQSTY 242 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC-CCSG--GGGGGGTTS-CCSEEECTTSTTGGGCSSHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc-cCCc--hhhhhcccC-CcceEEccCCcCccccCcchhH
Confidence 45677777777777777643 456677888888888877 6654 222223444 78888888887764 23
Q ss_pred HHHHHhhCCCccEEEc
Q 003270 645 IEELLAYCTHLTHVSL 660 (835)
Q Consensus 645 ~~~~l~~~~~L~~L~l 660 (835)
....+..+++|+.|+=
T Consensus 243 ~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 243 ISAIRERFPKLLRLDG 258 (267)
T ss_dssp HHHHHHHCTTCCEESS
T ss_pred HHHHHHHCcccCeECC
Confidence 3456778888888763
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=97.65 E-value=3.3e-05 Score=76.24 Aligned_cols=41 Identities=20% Similarity=0.245 Sum_probs=23.0
Q ss_pred cCCCCCCEEEecCCCCCc--ccccccccCCcccEEeccCcccc
Q 003270 144 ADCSMLKSLNVNDATLGN--GVQEIPINHDQLRRLEITKCRVM 184 (835)
Q Consensus 144 ~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~ 184 (835)
..+++|++|+|++|.+++ .++..+..+++|++|+|++|.+.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~ 209 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK 209 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCC
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccC
Confidence 356677777777777655 34444444555555555554443
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00088 Score=62.23 Aligned_cols=47 Identities=4% Similarity=0.187 Sum_probs=23.8
Q ss_pred HHHHHHhhCCcCcEEEcCCc-ccChh----hHHhhcCCCCCCEEEecCCCCC
Q 003270 114 LVMKAVSLLRNLEALTLGRG-QLGDA----FFHALADCSMLKSLNVNDATLG 160 (835)
Q Consensus 114 ~~~~~l~~~~~L~~L~l~~~-~i~~~----~~~~l~~~~~L~~L~l~~~~~~ 160 (835)
.+...+..-+.|+.|+++++ .|.+. +.+++..-+.|+.|+|++|.+.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 34444445555666666553 55543 3344444455555555555543
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0041 Score=53.88 Aligned_cols=56 Identities=25% Similarity=0.328 Sum_probs=46.7
Q ss_pred chh--hhhhcCC-ccceeecccCcCChhHH-HHHHhcCCCcceeecccccCCCchHHHHHHH
Q 003270 763 SLE--TLKLDCP-KLTSLFLQSCNIDEEGV-ESAITQCGMLETLDVRFCPKICSTSMGRLRA 820 (835)
Q Consensus 763 ~l~--~l~~~~~-~L~~L~l~~~~i~~~~l-~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~ 820 (835)
.|+ .+|..+| +|+.|+|++|.|+ .+ +..|..+++|+.|+|.+||+.+++.+..+..
T Consensus 19 ~L~~~~vP~~lp~~l~~L~Ls~N~l~--~l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l~~ 78 (130)
T 3rfe_A 19 GLTWASLPTAFPVDTTELVLTGNNLT--ALPPGLLDALPALRTAHLGANPWRCDCRLVPLRA 78 (130)
T ss_dssp CCCTTTSCSCCCTTCSEEECTTSCCS--SCCTTTGGGCTTCCEEECCSSCCBCSGGGHHHHH
T ss_pred CCccccCCCCCCcCCCEEECCCCcCC--ccChhhhhhccccCEEEecCCCeeccCccHHHHH
Confidence 466 7887775 7999999999985 44 4567899999999999999999998877765
|
| >1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E | Back alignment and structure |
|---|
Probab=90.24 E-value=0.11 Score=36.36 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=23.1
Q ss_pred HHhhhccccchhhhHHHHHHHHhhcCCCCceeec
Q 003270 46 KQKIWKSGWILQMTYCIWQWRAASAHEDFWRCLN 79 (835)
Q Consensus 46 ~~~~~~~~~~~~~~~v~~~W~~~~~~~~~~~~l~ 79 (835)
++..+.......++.|||+|+.+..++..|+.++
T Consensus 20 I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~ld 53 (53)
T 1fs1_A 20 IFSCLCLPELLKVSGVCKRWYRLASDESLWQTLD 53 (53)
T ss_dssp HHTTSCGGGHHHHHTTCHHHHHHHTCGGGC----
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhcC
Confidence 4444455556677889999999999999998764
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.37 Score=41.35 Aligned_cols=54 Identities=15% Similarity=0.039 Sum_probs=23.9
Q ss_pred EEEcCCcccC-hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcc
Q 003270 127 ALTLGRGQLG-DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCR 182 (835)
Q Consensus 127 ~L~l~~~~i~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 182 (835)
.++.+++.++ ..+|..+ .++|++|+|++|.++..-+..+..+++|++|+|.+|.
T Consensus 12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 4445555444 2233222 1245566666665544333334444444444444443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 835 | ||||
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 7e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 1e-04 | |
| d1koha1 | 162 | c.10.2.3 (A:201-362) mRNA export factor tap {Human | 7e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 0.003 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.004 |
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.3 bits (116), Expect = 7e-07
Identities = 39/265 (14%), Positives = 76/265 (28%), Gaps = 17/265 (6%)
Query: 580 TMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGT 639
LDL+ L + + + + L + S +Q +DLS
Sbjct: 3 QTLDLTGKNLHPDVTGRLLSQGVIAFRCPR-----SFMDQPLAEHFSPFRVQHMDLSNSV 57
Query: 640 LCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGIF-----PHE 694
+ S + +L+ C+ L ++SL G + + ++ G
Sbjct: 58 IEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLL 117
Query: 695 NIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLC 754
+ +D+ N + + +LS +L + V
Sbjct: 118 SSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL 177
Query: 755 FLNLSNCCSLETLKL-----DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPK 809
+ + L L L C + + L+TL V
Sbjct: 178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-- 235
Query: 810 ICSTSMGRLRAACPSLKRIFSSLTT 834
+ ++ L+ A P L+ S TT
Sbjct: 236 VPDGTLQLLKEALPHLQINCSHFTT 260
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 1e-04
Identities = 44/262 (16%), Positives = 78/262 (29%), Gaps = 11/262 (4%)
Query: 195 HLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDES 254
L L N+ V L + C + S +++ +D+SN + +
Sbjct: 4 TLDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSV-IEVST 62
Query: 255 LREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLHSCEGITSASMAAISHSYML 311
L I C+ L+ L+ I + L L L C G + ++ + S
Sbjct: 63 LHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS- 121
Query: 312 EVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITS 371
LD NL +Q LNL + + R
Sbjct: 122 ---RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV 178
Query: 372 NSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNC 431
+ S+ + + Q LQ + L+ C + G P LK+L +
Sbjct: 179 HLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL---GEIPTLKTLQVFGI 235
Query: 432 EGLTVVRFCSTSLVSLSLVGCR 453
++ +L L +
Sbjct: 236 VPDGTLQLLKEALPHLQINCSH 257
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (90), Expect = 7e-04
Identities = 27/147 (18%), Positives = 56/147 (38%), Gaps = 6/147 (4%)
Query: 173 LRRLEITKCRVMRVSIRC---PQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAI 229
L L+ + +++ + + L LK ++ + +L+ S A +
Sbjct: 1 LNELKPEQVEQLKLIMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRSS---MAATL 57
Query: 230 RLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCPNISLESVRLPMLTVL 289
R+ + P+L SL++SN + + I NL+ILN S S + L
Sbjct: 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKL 117
Query: 290 QLHSCEGITSASMAAISHSYMLEVLEL 316
+ +G + + +Y+ + E
Sbjct: 118 EELWLDGNSLSDTFRDQSTYISAIRER 144
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 38.1 bits (87), Expect = 0.003
Identities = 35/213 (16%), Positives = 67/213 (31%), Gaps = 6/213 (2%)
Query: 552 PLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACK 611
P + + I ++ + L +T L T +T +E + L L+L+ +
Sbjct: 16 PALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDNQ 74
Query: 612 YLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAY--CTHLTHVSLNGCGNMHDL 669
L++L K L + + + L L G N+ L
Sbjct: 75 ITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL 134
Query: 670 NWGASGCQPFESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARC 729
+ + + N S P L L + + + I P A
Sbjct: 135 YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPLASL 194
Query: 730 FHLSSLNLSLSANLKEVDV--ACFNLCFLNLSN 760
+L ++L + + +V NL + L+N
Sbjct: 195 PNLIEVHLK-NNQISDVSPLANTSNLFIVTLTN 226
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.004
Identities = 22/161 (13%), Positives = 40/161 (24%), Gaps = 8/161 (4%)
Query: 578 NLTMLDLSYTFLTN--LEPVFESCLQLKVLKLQACKYLTNTSLESLYKK-GSLPALQELD 634
++ LD+ L++ + Q +V++L C LT + + PAL EL+
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELN 61
Query: 635 LSYGTLCQSAIEELLAY----CTHLTHVSLNGCGNMHDLNWGASGCQPFESPSVYNSCGI 690
L L + +L + +SL C S
Sbjct: 62 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 121
Query: 691 FPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFH 731
+ + L
Sbjct: 122 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA 162
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 835 | |||
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.83 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.81 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.81 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.75 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.73 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.73 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.72 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.71 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.68 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.66 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.58 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.58 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.55 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.5 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.49 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.43 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.41 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.4 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.37 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.36 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.35 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.34 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.33 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.3 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.2 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.19 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.12 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.11 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.1 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.1 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.08 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.05 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.94 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 98.87 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.62 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 98.51 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.39 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 98.13 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.97 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.93 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.85 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 97.7 | |
| d1fs1a1 | 41 | Skp2 {Human (Homo sapiens) [TaxId: 9606]} | 90.38 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.83 E-value=4.2e-19 Score=189.46 Aligned_cols=81 Identities=12% Similarity=0.119 Sum_probs=43.8
Q ss_pred hhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCC
Q 003270 548 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSL 627 (835)
Q Consensus 548 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 627 (835)
+..+++++.|++++|...+. ..+..+++|++|++++|++++++ .+.++++|++|++++|+ +++..+ +.++
T Consensus 303 ~~~~~~l~~L~ls~n~l~~l---~~l~~l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~-l~~l~~-----l~~l 372 (384)
T d2omza2 303 ISNLKNLTYLTLYFNNISDI---SPVSSLTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQ-ISDLTP-----LANL 372 (384)
T ss_dssp GGGCTTCSEEECCSSCCSCC---GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC-CCBCGG-----GTTC
T ss_pred cchhcccCeEECCCCCCCCC---cccccCCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCc-CCCChh-----hccC
Confidence 34445555555555543321 23555566666666666665554 35556666666666665 554432 2456
Q ss_pred CCccEEeCCCc
Q 003270 628 PALQELDLSYG 638 (835)
Q Consensus 628 ~~L~~L~l~~n 638 (835)
++|+.|++++|
T Consensus 373 ~~L~~L~L~~N 383 (384)
T d2omza2 373 TRITQLGLNDQ 383 (384)
T ss_dssp TTCSEEECCCE
T ss_pred CCCCEeeCCCC
Confidence 66666666655
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.81 E-value=4.6e-19 Score=189.12 Aligned_cols=147 Identities=22% Similarity=0.277 Sum_probs=116.6
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.+++++|.++ .++ .+..+++|++|++++| .++. ++ .+..++.++.+.+.+|.... +
T Consensus 237 l~~l~~L~~L~l~~n~l~--------~~~-~~~~~~~L~~L~l~~~-~l~~--~~-~~~~~~~l~~l~~~~n~l~~---~ 300 (384)
T d2omza2 237 LASLTNLTDLDLANNQIS--------NLA-PLSGLTKLTELKLGAN-QISN--IS-PLAGLTALTNLELNENQLED---I 300 (384)
T ss_dssp GGGCTTCSEEECCSSCCC--------CCG-GGTTCTTCSEEECCSS-CCCC--CG-GGTTCTTCSEEECCSSCCSC---C
T ss_pred hhcccccchhccccCccC--------CCC-cccccccCCEeeccCc-ccCC--CC-cccccccccccccccccccc---c
Confidence 455677777777777663 233 2667889999999987 4543 32 36788899999999988654 3
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++++.|++++|+++++++ +..+++|++|++++|+ +++.. . ++.+++|++|++++|++++. .+ +.
T Consensus 301 ~~~~~~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~-l~~l~--~---l~~l~~L~~L~l~~N~l~~l-~~--l~ 370 (384)
T d2omza2 301 SPISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNK-VSDVS--S---LANLTNINWLSAGHNQISDL-TP--LA 370 (384)
T ss_dssp GGGGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC-CCCCG--G---GGGCTTCCEEECCSSCCCBC-GG--GT
T ss_pred cccchhcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCC-CCCCh--h---HcCCCCCCEEECCCCcCCCC-hh--hc
Confidence 468889999999999999999864 8889999999999997 88643 2 36799999999999999872 33 88
Q ss_pred hCCCccEEEccCC
Q 003270 651 YCTHLTHVSLNGC 663 (835)
Q Consensus 651 ~~~~L~~L~l~~~ 663 (835)
.+++|++|++++|
T Consensus 371 ~l~~L~~L~L~~N 383 (384)
T d2omza2 371 NLTRITQLGLNDQ 383 (384)
T ss_dssp TCTTCSEEECCCE
T ss_pred cCCCCCEeeCCCC
Confidence 9999999999986
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.81 E-value=1.4e-21 Score=202.03 Aligned_cols=274 Identities=15% Similarity=0.165 Sum_probs=187.9
Q ss_pred HHHHHHhhcCCC--CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhh--HHHHHHhhCCcCcEEEcCC-cccC
Q 003270 62 IWQWRAASAHED--FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHL--LVMKAVSLLRNLEALTLGR-GQLG 136 (835)
Q Consensus 62 ~~~W~~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~--~~~~~l~~~~~L~~L~l~~-~~i~ 136 (835)
...|. ...++| .|.+|.|+..... .+|++|+++++ .+.+ .+|..++++++|++|++++ |.++
T Consensus 24 l~sW~-~~~d~C~~~w~gv~C~~~~~~-----------~~v~~L~L~~~-~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~ 90 (313)
T d1ogqa_ 24 LSSWL-PTTDCCNRTWLGVLCDTDTQT-----------YRVNNLDLSGL-NLPKPYPIPSSLANLPYLNFLYIGGINNLV 90 (313)
T ss_dssp GTTCC-TTSCTTTTCSTTEEECCSSSC-----------CCEEEEEEECC-CCSSCEECCGGGGGCTTCSEEEEEEETTEE
T ss_pred CCCCC-CCCCCCCCcCCCeEEeCCCCc-----------EEEEEEECCCC-CCCCCCCCChHHhcCccccccccccccccc
Confidence 45686 456777 5999999875432 37999999984 4544 3567888899999999986 7888
Q ss_pred hhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccchHHHhhcCCCCcEE
Q 003270 137 DAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLL 216 (835)
Q Consensus 137 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L 216 (835)
+.+|..++++++|++|++++|++.+..+..+..+.+|+++++++|.+... +...+..+++|+++
T Consensus 91 g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~----------------~p~~l~~l~~L~~l 154 (313)
T d1ogqa_ 91 GPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT----------------LPPSISSLPNLVGI 154 (313)
T ss_dssp SCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC----------------CCGGGGGCTTCCEE
T ss_pred cccccccccccccchhhhccccccccccccccchhhhccccccccccccc----------------CchhhccCccccee
Confidence 88888899999999999999988877777777777777777776654321 12456667777777
Q ss_pred eecCCCCCCHHHHHHHHhcCCCC-CEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---CCCccccCCCCCcEEecC
Q 003270 217 DIASCHKLSDAAIRLAATSCPQL-ESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---NISLESVRLPMLTVLQLH 292 (835)
Q Consensus 217 ~l~~~~~l~~~~l~~~~~~~~~L-~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~l~~~~~~~~~L~~L~l~ 292 (835)
++++|. +. +.+|..+..+..+ +.+++++|. +++..+..+. .+ ....+++..+. .++.....+++++.+++.
T Consensus 155 ~l~~n~-l~-~~ip~~~~~l~~l~~~l~~~~n~-l~~~~~~~~~-~l-~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~ 229 (313)
T d1ogqa_ 155 TFDGNR-IS-GAIPDSYGSFSKLFTSMTISRNR-LTGKIPPTFA-NL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLA 229 (313)
T ss_dssp ECCSSC-CE-EECCGGGGCCCTTCCEEECCSSE-EEEECCGGGG-GC-CCSEEECCSSEEEECCGGGCCTTSCCSEEECC
T ss_pred eccccc-cc-ccccccccccccccccccccccc-cccccccccc-cc-cccccccccccccccccccccccccccccccc
Confidence 777763 33 2345555666554 677777776 5544444442 33 34467777665 566667778888888888
Q ss_pred CCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccceeeeccCCCcceeeeccC
Q 003270 293 SCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSSIMVSNCAALHRINITSN 372 (835)
Q Consensus 293 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~~~l~~~~~L~~L~l~~n 372 (835)
++ .+.... ..++.+++|+.|++++|++.+.+|.. +.++++|++|++++|
T Consensus 230 ~~-~l~~~~-~~~~~~~~L~~L~Ls~N~l~g~iP~~-----------------------------l~~L~~L~~L~Ls~N 278 (313)
T d1ogqa_ 230 KN-SLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG-----------------------------LTQLKFLHSLNVSFN 278 (313)
T ss_dssp SS-EECCBG-GGCCCCTTCCEEECCSSCCEECCCGG-----------------------------GGGCTTCCEEECCSS
T ss_pred cc-cccccc-cccccccccccccCccCeecccCChH-----------------------------HhCCCCCCEEECcCC
Confidence 76 454433 45677788888888888877766643 345667777777777
Q ss_pred ccccchhhcchhhHHHHhhCCcccEEecCCCcCCch
Q 003270 373 SLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTN 408 (835)
Q Consensus 373 ~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~ 408 (835)
+++|..+. .. .+++|+.+++++|+.+.+
T Consensus 279 ~l~g~iP~-~~-------~L~~L~~l~l~~N~~l~g 306 (313)
T d1ogqa_ 279 NLCGEIPQ-GG-------NLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EEEEECCC-ST-------TGGGSCGGGTCSSSEEES
T ss_pred cccccCCC-cc-------cCCCCCHHHhCCCccccC
Confidence 77775442 21 346777788888554555
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.5e-18 Score=171.57 Aligned_cols=227 Identities=15% Similarity=0.294 Sum_probs=167.8
Q ss_pred CceeeccCCCCCCHHHHHHHHhcCCCeeEEEccCCcchhhHHHHHHhhCCcCcEEEcCCcccChh-hHHhhcCCCCCCEE
Q 003270 74 FWRCLNFENRKISVEQFEDVCQRYPNATEVNIYGAPAIHLLVMKAVSLLRNLEALTLGRGQLGDA-FFHALADCSMLKSL 152 (835)
Q Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~i~~~-~~~~l~~~~~L~~L 152 (835)
+|+++++++...++..+...+++ .+..+.+... ...... .......+|++|+++++.+++. +...+..|++|++|
T Consensus 1 LW~~lDLs~~~l~~~~l~~l~~~--~~~~lrl~~~-~~~~~~-~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L 76 (284)
T d2astb2 1 LWQTLDLTGKNLHPDVTGRLLSQ--GVIAFRCPRS-FMDQPL-AEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 76 (284)
T ss_dssp TSSEEECTTCBCCHHHHHHHHHT--TCSEEECTTC-EECSCC-CSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred CcCEEECCCCCCCchHHHHHHhc--cceEeecccc-ccccch-hhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccc
Confidence 59999999888888777777654 3445555542 222111 1223456899999998888765 44556789999999
Q ss_pred EecCCCCCcccccccccCCcccEEeccCcc-ccccccCCCCCcEEEecccchHHHhhcCCCCcEEeecCCCCCCHHHHHH
Q 003270 153 NVNDATLGNGVQEIPINHDQLRRLEITKCR-VMRVSIRCPQLEHLSLKRSNMAQAVLNCPLLHLLDIASCHKLSDAAIRL 231 (835)
Q Consensus 153 ~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~ 231 (835)
+++++.+++..+..+..+++|++|++++|. +.+ ..+...+..+++|++|++++|..+++.++..
T Consensus 77 ~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd---------------~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~ 141 (284)
T d2astb2 77 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE---------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQV 141 (284)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH---------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHH
T ss_pred cccccCCCcHHHHHHhcCCCCcCccccccccccc---------------cccchhhHHHHhccccccccccccccccchh
Confidence 999998877666666666667777666532 221 1233456778999999999988888877766
Q ss_pred HHhc-CCCCCEEeCCCCC-CCChHHHHHHHHhCCCCcEEecCCCCCCC----ccccCCCCCcEEecCCCCCCChhhHHHh
Q 003270 232 AATS-CPQLESLDMSNCS-CVSDESLREIALSCANLRILNSSYCPNIS----LESVRLPMLTVLQLHSCEGITSASMAAI 305 (835)
Q Consensus 232 ~~~~-~~~L~~L~L~~~~-~l~~~~~~~~~~~~~~L~~L~l~~~~~l~----~~~~~~~~L~~L~l~~~~~~~~~~~~~l 305 (835)
.+.. +++|+.|+++++. .+++..+..+..++++|++|++++|..+. ..+.++++|++|++++|..+++..+..+
T Consensus 142 ~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L 221 (284)
T d2astb2 142 AVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221 (284)
T ss_dssp HHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGG
T ss_pred hhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHH
Confidence 5554 5789999999863 47788888888789999999999887544 3456789999999999888988888888
Q ss_pred hhccCccEEEccCC
Q 003270 306 SHSYMLEVLELDNC 319 (835)
Q Consensus 306 ~~~~~L~~L~l~~~ 319 (835)
+++++|++|++.+|
T Consensus 222 ~~~~~L~~L~l~~~ 235 (284)
T d2astb2 222 GEIPTLKTLQVFGI 235 (284)
T ss_dssp GGCTTCCEEECTTS
T ss_pred hcCCCCCEEeeeCC
Confidence 89999999999887
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=7.4e-17 Score=176.32 Aligned_cols=110 Identities=16% Similarity=0.270 Sum_probs=63.5
Q ss_pred CCcEEEecccchH-----HHhhcCCCCcEEeecCCCCCCHHHH---HHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCC
Q 003270 192 QLEHLSLKRSNMA-----QAVLNCPLLHLLDIASCHKLSDAAI---RLAATSCPQLESLDMSNCSCVSDESLREIALSCA 263 (835)
Q Consensus 192 ~L~~L~l~~~~i~-----~~~~~~~~L~~L~l~~~~~l~~~~l---~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~ 263 (835)
+|++||+++++++ ..++.++++++|++++| .+++.++ ...+..+++|++|+|++|. +++.+...++..+.
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~-~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDC-GLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESS-CCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTC
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCC-CCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHh
Confidence 4566666666553 44566666777777776 4665432 3445666677777777666 66655555543221
Q ss_pred CCcEEecCCCCCCCccccCCCCCcEEecCCCCCCChhhH----HHhhhccCccEEEccCCCc
Q 003270 264 NLRILNSSYCPNISLESVRLPMLTVLQLHSCEGITSASM----AAISHSYMLEVLELDNCNL 321 (835)
Q Consensus 264 ~L~~L~l~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~ 321 (835)
....+|++|++++| .+++... ..+..+++|++|++++|.+
T Consensus 81 -----------------~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~i 124 (460)
T d1z7xw1 81 -----------------TPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNLL 124 (460)
T ss_dssp -----------------STTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSBC
T ss_pred -----------------cCCCCCCEEECCCC-Cccccccccccchhhccccccccccccccc
Confidence 01134555555555 5665443 3345567788888877764
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.9e-17 Score=181.11 Aligned_cols=101 Identities=17% Similarity=0.226 Sum_probs=77.6
Q ss_pred CcccEEeccCccccc-----cccCCCCCcEEEecccchH--------HHhhcCCCCcEEeecCCCCCCHHHHHHHHhc--
Q 003270 171 DQLRRLEITKCRVMR-----VSIRCPQLEHLSLKRSNMA--------QAVLNCPLLHLLDIASCHKLSDAAIRLAATS-- 235 (835)
Q Consensus 171 ~~L~~L~l~~~~~~~-----~~~~l~~L~~L~l~~~~i~--------~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~-- 235 (835)
.+|+.|+++++++.. +...++++++|++++|+++ ..+..+++|++|++++| .+++.++......
T Consensus 2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~l~ 80 (460)
T d1z7xw1 2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQGLQ 80 (460)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHTTC
T ss_pred CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHHHh
Confidence 468999999999865 3457899999999999775 45688999999999998 6887766655443
Q ss_pred --CCCCCEEeCCCCCCCChHHHHHHHH---hCCCCcEEecCCC
Q 003270 236 --CPQLESLDMSNCSCVSDESLREIAL---SCANLRILNSSYC 273 (835)
Q Consensus 236 --~~~L~~L~L~~~~~l~~~~~~~~~~---~~~~L~~L~l~~~ 273 (835)
..+|++|++++|. +++.....++. .+++|++|++++|
T Consensus 81 ~~~~~L~~L~L~~n~-it~~~~~~l~~~l~~~~~L~~L~L~~N 122 (460)
T d1z7xw1 81 TPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDN 122 (460)
T ss_dssp STTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSS
T ss_pred cCCCCCCEEECCCCC-ccccccccccchhhccccccccccccc
Confidence 3579999999998 88776655543 4556666666665
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.72 E-value=1.9e-18 Score=178.15 Aligned_cols=251 Identities=17% Similarity=0.156 Sum_probs=191.9
Q ss_pred CcCcEEEcCCcccCh--hhHHhhcCCCCCCEEEecC-CCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEec
Q 003270 123 RNLEALTLGRGQLGD--AFFHALADCSMLKSLNVND-ATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLK 199 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~--~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~ 199 (835)
.+++.|+++++.+.+ .+|.+++++++|++|++++ |.+++.+|..+.++++|++|++++|++..+.
T Consensus 50 ~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~------------ 117 (313)
T d1ogqa_ 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI------------ 117 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEEC------------
T ss_pred EEEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccc------------
Confidence 368999999999887 4789999999999999987 7888899998888888888888877765332
Q ss_pred ccchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCC-cEEecCCCC---C
Q 003270 200 RSNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANL-RILNSSYCP---N 275 (835)
Q Consensus 200 ~~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L-~~L~l~~~~---~ 275 (835)
...+..+++|+.+++++|. +. ..+|..+.++++++++++++|. +.+..+..+. .+..+ +.+++++|. .
T Consensus 118 ----~~~~~~~~~L~~l~l~~N~-~~-~~~p~~l~~l~~L~~l~l~~n~-l~~~ip~~~~-~l~~l~~~l~~~~n~l~~~ 189 (313)
T d1ogqa_ 118 ----PDFLSQIKTLVTLDFSYNA-LS-GTLPPSISSLPNLVGITFDGNR-ISGAIPDSYG-SFSKLFTSMTISRNRLTGK 189 (313)
T ss_dssp ----CGGGGGCTTCCEEECCSSE-EE-SCCCGGGGGCTTCCEEECCSSC-CEEECCGGGG-CCCTTCCEEECCSSEEEEE
T ss_pred ----cccccchhhhccccccccc-cc-ccCchhhccCcccceeeccccc-cccccccccc-ccccccccccccccccccc
Confidence 1345667778888888774 22 2456778999999999999998 7766666665 55554 889998886 3
Q ss_pred CCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeeccccccccchhhcccccce
Q 003270 276 ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRLVHCRKFADLNLRAMMLSS 355 (835)
Q Consensus 276 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~~~~~~l~~l~l~~~~l~~ 355 (835)
.+..+..+.. ..+++..+ ...+..+..+..+++++.+++.++.+.+.+|
T Consensus 190 ~~~~~~~l~~-~~l~l~~~-~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~----------------------------- 238 (313)
T d1ogqa_ 190 IPPTFANLNL-AFVDLSRN-MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG----------------------------- 238 (313)
T ss_dssp CCGGGGGCCC-SEEECCSS-EEEECCGGGCCTTSCCSEEECCSSEECCBGG-----------------------------
T ss_pred cccccccccc-cccccccc-ccccccccccccccccccccccccccccccc-----------------------------
Confidence 4445555544 46888875 5666667777889999999999987655433
Q ss_pred eeeccCCCcceeeeccCccccchhhcchhhHHHHhhCCcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCc
Q 003270 356 IMVSNCAALHRINITSNSLQKLSLQKQENLTSLALQCQCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLT 435 (835)
Q Consensus 356 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~l~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~ 435 (835)
.+..+++++.|++++|+++|..+.... .+++|++|++++ |++++.+|+ ...+++|+.+++.+++.+.
T Consensus 239 -~~~~~~~L~~L~Ls~N~l~g~iP~~l~-------~L~~L~~L~Ls~-N~l~g~iP~----~~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 239 -KVGLSKNLNGLDLRNNRIYGTLPQGLT-------QLKFLHSLNVSF-NNLCGEIPQ----GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp -GCCCCTTCCEEECCSSCCEECCCGGGG-------GCTTCCEEECCS-SEEEEECCC----STTGGGSCGGGTCSSSEEE
T ss_pred -ccccccccccccCccCeecccCChHHh-------CCCCCCEEECcC-CcccccCCC----cccCCCCCHHHhCCCcccc
Confidence 245567889999999999987655443 358999999999 699987664 2678899999999887555
Q ss_pred cc
Q 003270 436 VV 437 (835)
Q Consensus 436 ~~ 437 (835)
..
T Consensus 306 g~ 307 (313)
T d1ogqa_ 306 GS 307 (313)
T ss_dssp ST
T ss_pred CC
Confidence 44
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=1.5e-16 Score=160.31 Aligned_cols=204 Identities=20% Similarity=0.231 Sum_probs=146.8
Q ss_pred cCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCc-cccC--chHHHhccc
Q 003270 524 NCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYT-FLTN--LEPVFESCL 600 (835)
Q Consensus 524 ~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~-~~~~--l~~~~~~~~ 600 (835)
...+|++|++++| .+.+..+...+..|++|++|++++|+ +++.++..+..+++|++|++++| .+++ +...+.+|+
T Consensus 44 ~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~ 121 (284)
T d2astb2 44 SPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121 (284)
T ss_dssp CCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT
T ss_pred cCCCCCEEECCCC-ccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH
Confidence 4568999999998 57777788888999999999999996 55556788889999999999996 4553 455667899
Q ss_pred cccEEecccccccchhhHHHHHhcCCCCCccEEeCCCc--ccchHHHHHHHhhCCCccEEEccCCCCCccccccccccCC
Q 003270 601 QLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYG--TLCQSAIEELLAYCTHLTHVSLNGCGNMHDLNWGASGCQP 678 (835)
Q Consensus 601 ~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 678 (835)
+|++|++++|..+++........ ..++.|+.|+++++ .+++..+...+..|++|++|++++|..+++..
T Consensus 122 ~L~~L~ls~c~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~-------- 192 (284)
T d2astb2 122 RLDELNLSWCFDFTEKHVQVAVA-HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC-------- 192 (284)
T ss_dssp TCCEEECCCCTTCCHHHHHHHHH-HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGG--------
T ss_pred hccccccccccccccccchhhhc-ccccccchhhhcccccccccccccccccccccccccccccccCCCchh--------
Confidence 99999999998787765543311 23678999999975 57776777778889999999999987654321
Q ss_pred CCCCccccccccCCCCCcccccCccccccccccccCCCCccccccCcccccCccceEeccCCCCccccccccccccEEec
Q 003270 679 FESPSVYNSCGIFPHENIHESIDQPNRLLQNLNCVGCPNIRKVFIPPQARCFHLSSLNLSLSANLKEVDVACFNLCFLNL 758 (835)
Q Consensus 679 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~L~~L~i~~~~~l~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~L~~L~l 758 (835)
+..+.++++|++|++++|..+++..
T Consensus 193 --------------------------------------------~~~l~~~~~L~~L~L~~C~~i~~~~----------- 217 (284)
T d2astb2 193 --------------------------------------------FQEFFQLNYLQHLSLSRCYDIIPET----------- 217 (284)
T ss_dssp --------------------------------------------GGGGGGCTTCCEEECTTCTTCCGGG-----------
T ss_pred --------------------------------------------hhhhcccCcCCEEECCCCCCCChHH-----------
Confidence 2234455566666666666665432
Q ss_pred ccccchhhhhhcCCccceeecccCcCChhHHHHHHhcCCCcc
Q 003270 759 SNCCSLETLKLDCPKLTSLFLQSCNIDEEGVESAITQCGMLE 800 (835)
Q Consensus 759 ~~c~~l~~l~~~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~ 800 (835)
+..+. .+|+|++|++++| +++.+++.....+|+|+
T Consensus 218 -----l~~L~-~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~ 252 (284)
T d2astb2 218 -----LLELG-EIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ 252 (284)
T ss_dssp -----GGGGG-GCTTCCEEECTTS-SCTTCHHHHHHHSTTSE
T ss_pred -----HHHHh-cCCCCCEEeeeCC-CCHHHHHHHHHhCcccc
Confidence 22222 3566777777766 56566666556666665
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.68 E-value=3.5e-16 Score=160.28 Aligned_cols=113 Identities=14% Similarity=0.057 Sum_probs=72.5
Q ss_pred CCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccE
Q 003270 525 CPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKV 604 (835)
Q Consensus 525 ~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~ 604 (835)
+++|++|++++|. .. ...+..+..++.++.|++++|...+. .+..+.++++|++|+|++|.++.+|..+..+++|++
T Consensus 170 ~~~L~~L~l~~n~-~~-~~~~~~~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N~L~~lp~~l~~l~~L~~ 246 (305)
T d1xkua_ 170 PPSLTELHLDGNK-IT-KVDAASLKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQV 246 (305)
T ss_dssp CTTCSEEECTTSC-CC-EECTGGGTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSSCCSSCCTTTTTCSSCCE
T ss_pred CCccCEEECCCCc-CC-CCChhHhhcccccccccccccccccc-ccccccccccceeeecccccccccccccccccCCCE
Confidence 4667777777763 22 23445566777777777777764433 255677777888888888877777777777788888
Q ss_pred EecccccccchhhHHHHH---hcCCCCCccEEeCCCcccc
Q 003270 605 LKLQACKYLTNTSLESLY---KKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 605 L~l~~~~~l~~~~~~~l~---~~~~~~~L~~L~l~~n~~~ 641 (835)
|++++|+ |+......+. ......+|+.|++++|.+.
T Consensus 247 L~Ls~N~-i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 247 VYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp EECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred EECCCCc-cCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence 8888776 6655433221 1233456666666666654
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.66 E-value=4.3e-16 Score=159.54 Aligned_cols=190 Identities=13% Similarity=0.082 Sum_probs=94.5
Q ss_pred cCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccccccc-CCCCCcEEEecccc
Q 003270 124 NLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSI-RCPQLEHLSLKRSN 202 (835)
Q Consensus 124 ~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~l~~L~~L~l~~~~ 202 (835)
++++|++++|.++...+.+|..+++|++|++++|.+....|..+.++++|++|++++|++..+.. ..+.++.|++.+|.
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~ 111 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENE 111 (305)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSC
T ss_pred CCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccc
Confidence 45566666665554444455566666666666666554445555556666666666665554432 23455666655554
Q ss_pred hH----HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC---C
Q 003270 203 MA----QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP---N 275 (835)
Q Consensus 203 i~----~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~---~ 275 (835)
+. ..+.....++.++...+...........+..+++|+++++++|. +... +. ..+++|++|+++++. .
T Consensus 112 l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~-l~~l-~~---~~~~~L~~L~l~~n~~~~~ 186 (305)
T d1xkua_ 112 ITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN-ITTI-PQ---GLPPSLTELHLDGNKITKV 186 (305)
T ss_dssp CCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC-CCSC-CS---SCCTTCSEEECTTSCCCEE
T ss_pred hhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCC-cccc-Cc---ccCCccCEEECCCCcCCCC
Confidence 43 33455566666666655322222223345556666666666665 3311 10 023455555555543 1
Q ss_pred CCccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCC
Q 003270 276 ISLESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNC 319 (835)
Q Consensus 276 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 319 (835)
.+..+..++.++.|+++++ .+.+..+..+..+++|++|++++|
T Consensus 187 ~~~~~~~~~~l~~L~~s~n-~l~~~~~~~~~~l~~L~~L~L~~N 229 (305)
T d1xkua_ 187 DAASLKGLNNLAKLGLSFN-SISAVDNGSLANTPHLRELHLNNN 229 (305)
T ss_dssp CTGGGTTCTTCCEEECCSS-CCCEECTTTGGGSTTCCEEECCSS
T ss_pred ChhHhhccccccccccccc-cccccccccccccccceeeecccc
Confidence 2223334444444444443 344333344444444444444444
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=6.6e-16 Score=154.24 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=37.7
Q ss_pred cCCccceeecccCcCChhHHHHHHhcCCCcceeecccccCCCchHHHHHHH
Q 003270 770 DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRA 820 (835)
Q Consensus 770 ~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~ 820 (835)
.+++|++|+|++|+|+ .+|..+..+++|+.|++++||+.|++.+..+..
T Consensus 170 ~l~~L~~L~Ls~N~L~--~lp~~~~~~~~L~~L~L~~Np~~CdC~~~~l~~ 218 (266)
T d1p9ag_ 170 GLENLDTLLLQENSLY--TIPKGFFGSHLLPFAFLHGNPWLCNCEILYFRR 218 (266)
T ss_dssp TCTTCCEEECCSSCCC--CCCTTTTTTCCCSEEECCSCCBCCSGGGHHHHH
T ss_pred cccccceeecccCCCc--ccChhHCCCCCCCEEEecCCCCCCCcchHHHHH
Confidence 3567888888888874 567677788899999999999999887665543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=2.1e-15 Score=152.41 Aligned_cols=50 Identities=24% Similarity=0.311 Sum_probs=39.8
Q ss_pred cCCccceeecccCcCChhHHHHHHhcCCCcceeecccccCCCchHHHHHHH
Q 003270 770 DCPKLTSLFLQSCNIDEEGVESAITQCGMLETLDVRFCPKICSTSMGRLRA 820 (835)
Q Consensus 770 ~~~~L~~L~l~~~~i~~~~l~~~~~~~~~L~~l~l~~c~~l~~~~~~~~~~ 820 (835)
.+++|++|++++|.+. ...+..+..+++|++|++++||..+++.+..+..
T Consensus 199 ~l~~L~~L~l~~N~i~-~~~~~~~~~~~~L~~L~l~~N~l~C~C~~~~l~~ 248 (284)
T d1ozna_ 199 DLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWVCDCRARPLWA 248 (284)
T ss_dssp TCTTCCEEECCSSCCS-CCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred hhhhcccccccccccc-cccccccccccccCEEEecCCCCCCCccchHHHH
Confidence 3567888888888876 4456778899999999999999999987766543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=1.1e-14 Score=147.15 Aligned_cols=137 Identities=20% Similarity=0.150 Sum_probs=89.7
Q ss_pred ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhcc
Q 003270 521 AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESC 599 (835)
Q Consensus 521 ~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~ 599 (835)
.+.++++|++|++++|. +. ......+...++|+.+++++|...+ +....|..+++|+.|++++|++..++. .|.++
T Consensus 100 ~~~~l~~L~~L~l~~n~-~~-~~~~~~~~~~~~L~~l~l~~N~l~~-i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l 176 (284)
T d1ozna_ 100 TFHGLGRLHTLHLDRCG-LQ-ELGPGLFRGLAALQYLYLQDNALQA-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGL 176 (284)
T ss_dssp TTTTCTTCCEEECTTSC-CC-CCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCCCEECTTTTTTC
T ss_pred hhcccccCCEEecCCcc-cc-cccccccchhcccchhhhccccccc-cChhHhccccchhhcccccCcccccchhhhccc
Confidence 45556666666666653 22 1122334556666666666665433 224456677777777777777777644 66777
Q ss_pred ccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 600 LQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 600 ~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
++|+.+.+++|. +++..+..+ ..+++|++|++++|++.. ..+..|..+++|++|++++|+-
T Consensus 177 ~~L~~l~l~~N~-l~~i~~~~f---~~l~~L~~L~l~~N~i~~-~~~~~~~~~~~L~~L~l~~N~l 237 (284)
T d1ozna_ 177 HSLDRLLLHQNR-VAHVHPHAF---RDLGRLMTLYLFANNLSA-LPTEALAPLRALQYLRLNDNPW 237 (284)
T ss_dssp TTCCEEECCSSC-CCEECTTTT---TTCTTCCEEECCSSCCSC-CCHHHHTTCTTCCEEECCSSCE
T ss_pred cccchhhhhhcc-ccccChhHh---hhhhhccccccccccccc-ccccccccccccCEEEecCCCC
Confidence 788888888777 666655543 667778888888887776 4566777788888888887763
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.50 E-value=2.9e-14 Score=142.05 Aligned_cols=156 Identities=25% Similarity=0.231 Sum_probs=121.1
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
|.++++|+.|++++|.++.+ + .+..+++|++|++++| .+.. .+..+..+++|+.|++++|...... .
T Consensus 51 f~~l~~L~~L~L~~N~l~~l--------~-~~~~l~~L~~L~Ls~N-~l~~--~~~~~~~l~~L~~L~l~~~~~~~~~-~ 117 (266)
T d1p9ag_ 51 LMPYTRLTQLNLDRAELTKL--------Q-VDGTLPVLGTLDLSHN-QLQS--LPLLGQTLPALTVLDVSFNRLTSLP-L 117 (266)
T ss_dssp GTTCTTCCEEECTTSCCCEE--------E-CCSCCTTCCEEECCSS-CCSS--CCCCTTTCTTCCEEECCSSCCCCCC-S
T ss_pred hhcccccccccccccccccc--------c-cccccccccccccccc-cccc--cccccccccccccccccccccceee-c
Confidence 66777888888888877433 2 2356788899999988 4543 4556778888999999888755433 4
Q ss_pred HhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHH
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELL 649 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l 649 (835)
..+..+.++++|++++|.+..++. .+..+++|+.+++++|. +++..+..+ ..+++|++|++++|+++. +|+.+
T Consensus 118 ~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~-l~~~~~~~~---~~l~~L~~L~Ls~N~L~~--lp~~~ 191 (266)
T d1p9ag_ 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN-LTELPAGLL---NGLENLDTLLLQENSLYT--IPKGF 191 (266)
T ss_dssp STTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC-CSCCCTTTT---TTCTTCCEEECCSSCCCC--CCTTT
T ss_pred cccccccccccccccccccceeccccccccccchhccccccc-ccccCcccc---ccccccceeecccCCCcc--cChhH
Confidence 567788899999999999988766 56778899999999987 877665544 778899999999999874 66667
Q ss_pred hhCCCccEEEccCCCC
Q 003270 650 AYCTHLTHVSLNGCGN 665 (835)
Q Consensus 650 ~~~~~L~~L~l~~~~~ 665 (835)
..+++|+.|++++||-
T Consensus 192 ~~~~~L~~L~L~~Np~ 207 (266)
T d1p9ag_ 192 FGSHLLPFAFLHGNPW 207 (266)
T ss_dssp TTTCCCSEEECCSCCB
T ss_pred CCCCCCCEEEecCCCC
Confidence 7789999999999874
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.49 E-value=1.6e-12 Score=135.76 Aligned_cols=67 Identities=16% Similarity=0.185 Sum_probs=34.8
Q ss_pred CcccEEecCCCcCCchhhhhhccCCCCCCCccEEEecCCCCCccccccCCcceEEeccCCcccccccccCCCCcEEecCC
Q 003270 393 QCLQEVDLTDCESLTNSVCEVFSDGGGCPMLKSLVLDNCEGLTVVRFCSTSLVSLSLVGCRAITALELKCPILEKVCLDG 472 (835)
Q Consensus 393 ~~L~~L~l~~c~~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~l~~l~l~~~~~l~~l~~~~~~L~~l~l~~ 472 (835)
++|++|++++| .++.. | ..+++|+.|++++|. ++.+ +...++|++|++++
T Consensus 284 ~~L~~L~Ls~N-~l~~l-p------~~~~~L~~L~L~~N~-L~~l---------------------~~~~~~L~~L~L~~ 333 (353)
T d1jl5a_ 284 PSLEELNVSNN-KLIEL-P------ALPPRLERLIASFNH-LAEV---------------------PELPQNLKQLHVEY 333 (353)
T ss_dssp TTCCEEECCSS-CCSCC-C------CCCTTCCEEECCSSC-CSCC---------------------CCCCTTCCEEECCS
T ss_pred CCCCEEECCCC-ccCcc-c------cccCCCCEEECCCCc-CCcc---------------------ccccCCCCEEECcC
Confidence 56666666663 55421 1 234566666665553 3332 22344566777766
Q ss_pred CCCccccccccccccccc
Q 003270 473 CDHIESASFVPVALQSLN 490 (835)
Q Consensus 473 ~~~l~~~~~~p~~L~~L~ 490 (835)
|+ ++.++..|.++++|.
T Consensus 334 N~-L~~lp~~~~~L~~L~ 350 (353)
T d1jl5a_ 334 NP-LREFPDIPESVEDLR 350 (353)
T ss_dssp SC-CSSCCCCCTTCCEEE
T ss_pred Cc-CCCCCccccccCeeE
Confidence 64 555555555554443
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.43 E-value=3.1e-12 Score=133.55 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=34.4
Q ss_pred CCCCEEEecCCCCCcccccccccCCcccEEeccCccccccccCCCCCcEEEecccch
Q 003270 147 SMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVSIRCPQLEHLSLKRSNM 203 (835)
Q Consensus 147 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~l~~L~~L~l~~~~i 203 (835)
.++++|+++++.++ .+|+. .++|++|++++|.+..++..+.+|++|++++|.+
T Consensus 38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l 90 (353)
T d1jl5a_ 38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNL 90 (353)
T ss_dssp HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCC
T ss_pred cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCcccccchhhhhhhhhhhccc
Confidence 36889999999875 46653 4567777777777766654445555555554443
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.41 E-value=7.5e-13 Score=128.28 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=26.3
Q ss_pred CCcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccc
Q 003270 122 LRNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRV 183 (835)
Q Consensus 122 ~~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~ 183 (835)
+.+|+.|++.+|.+++. +.+..+++|++|++++|.+++..+ +..+++++++++++|.+
T Consensus 40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPL 97 (227)
T ss_dssp HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCC
T ss_pred cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccc
Confidence 34455555555554432 234455555555555554433211 34444444444444433
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.40 E-value=2.3e-12 Score=133.63 Aligned_cols=227 Identities=19% Similarity=0.245 Sum_probs=158.9
Q ss_pred HHHHhcCCCeeEEEccCCcchhhHH----HHHHhhCCcCcEEEcCCcccCh----------hhHHhhcCCCCCCEEEecC
Q 003270 91 EDVCQRYPNATEVNIYGAPAIHLLV----MKAVSLLRNLEALTLGRGQLGD----------AFFHALADCSMLKSLNVND 156 (835)
Q Consensus 91 ~~~~~~~~~l~~L~l~~~~~~~~~~----~~~l~~~~~L~~L~l~~~~i~~----------~~~~~l~~~~~L~~L~l~~ 156 (835)
...++....+++|++++ +.+.+.. ...+...++|+.++++++.... .+..++..+++|++|++++
T Consensus 24 ~~~L~~~~~l~~L~Ls~-n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~ 102 (344)
T d2ca6a1 24 FAVLLEDDSVKEIVLSG-NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 102 (344)
T ss_dssp SHHHHHCSCCCEEECTT-SEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHhhCCCCCEEECcC-CcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCcccccccc
Confidence 44567788899999998 4565543 3345567889999998764331 2455667788999999999
Q ss_pred CCCCcc----cccccccCCcccEEeccCcccccc-----------------ccCCCCCcEEEecccchH--------HHh
Q 003270 157 ATLGNG----VQEIPINHDQLRRLEITKCRVMRV-----------------SIRCPQLEHLSLKRSNMA--------QAV 207 (835)
Q Consensus 157 ~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~l~~L~~L~l~~~~i~--------~~~ 207 (835)
|.+++. +...+...++|++|++++|.+... ....+.|+.+++++|.+. ..+
T Consensus 103 n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l 182 (344)
T d2ca6a1 103 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182 (344)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHH
T ss_pred cccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchh
Confidence 988653 444556678899999998876421 125678888888887654 446
Q ss_pred hcCCCCcEEeecCCCCCCHHHHH----HHHhcCCCCCEEeCCCCCCCChHHHHHHH---HhCCCCcEEecCCCCCCC---
Q 003270 208 LNCPLLHLLDIASCHKLSDAAIR----LAATSCPQLESLDMSNCSCVSDESLREIA---LSCANLRILNSSYCPNIS--- 277 (835)
Q Consensus 208 ~~~~~L~~L~l~~~~~l~~~~l~----~~~~~~~~L~~L~L~~~~~l~~~~~~~~~---~~~~~L~~L~l~~~~~l~--- 277 (835)
..++.|++|++++| .+++.++. ..+..+++|++|++++|. +++.+...+. ..+++|++|++++|. +.
T Consensus 183 ~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g 259 (344)
T d2ca6a1 183 QSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARG 259 (344)
T ss_dssp HHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHH
T ss_pred hhhhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-ccccccccccccccccccchhhhhhcCc-cCchh
Confidence 67888999999888 57765433 335677889999999887 7766555443 467788888888885 22
Q ss_pred -----cccc--CCCCCcEEecCCCCCCChhhHHHhh-----hccCccEEEccCCCcc
Q 003270 278 -----LESV--RLPMLTVLQLHSCEGITSASMAAIS-----HSYMLEVLELDNCNLL 322 (835)
Q Consensus 278 -----~~~~--~~~~L~~L~l~~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~~ 322 (835)
..+. ..+.|++|++++| .+.+.....+. ++++|++|++++|.+.
T Consensus 260 ~~~l~~~l~~~~~~~L~~L~ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~ 315 (344)
T d2ca6a1 260 AAAVVDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 315 (344)
T ss_dssp HHHHHHHHHTCSSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred hHHHHHHhhhccCCCCCEEECCCC-cCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence 1122 2467888888887 67776554443 3577888888887754
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.37 E-value=2.1e-12 Score=121.85 Aligned_cols=142 Identities=19% Similarity=0.278 Sum_probs=99.5
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+..+++|+.|++++|+++ .++. +.++++|++|++++|. +.. ++ .+.+++.|+.|++++|.....
T Consensus 58 l~~l~nL~~L~Ls~N~l~--------~~~~-l~~l~~L~~L~l~~n~-~~~--~~-~l~~l~~L~~L~l~~~~~~~~--- 121 (199)
T d2omxa2 58 VEYLNNLTQINFSNNQLT--------DITP-LKNLTKLVDILMNNNQ-IAD--IT-PLANLTNLTGLTLFNNQITDI--- 121 (199)
T ss_dssp GGGCTTCCEEECCSSCCC--------CCGG-GTTCTTCCEEECCSSC-CCC--CG-GGTTCTTCSEEECCSSCCCCC---
T ss_pred cccCCCcCcCcccccccc--------Cccc-ccCCcccccccccccc-ccc--cc-ccccccccccccccccccccc---
Confidence 566778888888888773 3332 6778888888888873 332 33 366778888888887776543
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++|+.|++++|++..++ .+..+++|++|++.+|+ +++.. .++++++|++|++++|++++ ++ .+.
T Consensus 122 ~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~-l~~l~-----~l~~l~~L~~L~ls~N~i~~--i~-~l~ 191 (199)
T d2omxa2 122 DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQ-VTDLK-----PLANLTTLERLDISSNKVSD--IS-VLA 191 (199)
T ss_dssp GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSC-CCCCG-----GGTTCTTCCEEECCSSCCCC--CG-GGG
T ss_pred cccchhhhhHHhhhhhhhhcccc-ccccccccccccccccc-ccCCc-----cccCCCCCCEEECCCCCCCC--Cc-ccc
Confidence 34667788888888888877664 46777888888888876 66543 23677888888888888776 22 366
Q ss_pred hCCCccEE
Q 003270 651 YCTHLTHV 658 (835)
Q Consensus 651 ~~~~L~~L 658 (835)
.+++|++|
T Consensus 192 ~L~~L~~L 199 (199)
T d2omxa2 192 KLTNLESL 199 (199)
T ss_dssp GCTTCSEE
T ss_pred CCCCCCcC
Confidence 77777765
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.36 E-value=2.5e-12 Score=122.52 Aligned_cols=146 Identities=22% Similarity=0.225 Sum_probs=117.2
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++++|+.|++++|.++ .++ .+..+++|++|++++| .+++ ++ .+..+++|+.|++++|.... +
T Consensus 64 l~~l~~L~~L~L~~n~i~--------~l~-~~~~l~~L~~L~l~~n-~i~~--l~-~l~~l~~L~~L~l~~~~~~~---~ 127 (210)
T d1h6ta2 64 IQYLPNVTKLFLNGNKLT--------DIK-PLANLKNLGWLFLDEN-KVKD--LS-SLKDLKKLKSLSLEHNGISD---I 127 (210)
T ss_dssp GGGCTTCCEEECCSSCCC--------CCG-GGTTCTTCCEEECCSS-CCCC--GG-GGTTCTTCCEEECTTSCCCC---C
T ss_pred HhhCCCCCEEeCCCcccc--------Ccc-ccccCccccccccccc-cccc--cc-cccccccccccccccccccc---c
Confidence 677889999999999873 344 3578899999999998 5654 44 47789999999999988654 3
Q ss_pred HhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHh
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLA 650 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 650 (835)
..+..+++++.+++++|.+++.+ .+..+++|+++++++|+ +++.. . +.++++|++|++++|++++ ++ .+.
T Consensus 128 ~~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~-l~~i~--~---l~~l~~L~~L~Ls~N~i~~--l~-~l~ 197 (210)
T d1h6ta2 128 NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQ-ISDIV--P---LAGLTKLQNLYLSKNHISD--LR-ALA 197 (210)
T ss_dssp GGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSC-CCCCG--G---GTTCTTCCEEECCSSCCCB--CG-GGT
T ss_pred ccccccccccccccccccccccc-ccccccccccccccccc-ccccc--c---ccCCCCCCEEECCCCCCCC--Ch-hhc
Confidence 46888999999999999988754 46678999999999997 77643 2 3778999999999999976 33 478
Q ss_pred hCCCccEEEccC
Q 003270 651 YCTHLTHVSLNG 662 (835)
Q Consensus 651 ~~~~L~~L~l~~ 662 (835)
.+++|++|++++
T Consensus 198 ~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 198 GLKNLDVLELFS 209 (210)
T ss_dssp TCTTCSEEEEEE
T ss_pred CCCCCCEEEccC
Confidence 899999999864
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.35 E-value=2.4e-12 Score=133.54 Aligned_cols=45 Identities=13% Similarity=0.131 Sum_probs=34.8
Q ss_pred HHHHHhhCCcCcEEEcCCcccChhhHH----hhcCCCCCCEEEecCCCC
Q 003270 115 VMKAVSLLRNLEALTLGRGQLGDAFFH----ALADCSMLKSLNVNDATL 159 (835)
Q Consensus 115 ~~~~l~~~~~L~~L~l~~~~i~~~~~~----~l~~~~~L~~L~l~~~~~ 159 (835)
+..++.....|+.|++++|.+++.... .+...++|+.++++++..
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~ 71 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFT 71 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCT
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcc
Confidence 345678899999999999999876444 455678899999887754
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.34 E-value=1.6e-12 Score=125.93 Aligned_cols=181 Identities=16% Similarity=0.193 Sum_probs=121.9
Q ss_pred cEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCccccccc--cCCCCCcEEEecccch
Q 003270 126 EALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVMRVS--IRCPQLEHLSLKRSNM 203 (835)
Q Consensus 126 ~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~l~~L~~L~l~~~~i 203 (835)
..++++.+.+++.. .++++.+|++|++.+|.++. ++ .+..+++|++|++++|.+..+. ..+++|++++++++.+
T Consensus 22 ~~~~l~~~~~~d~~--~~~~l~~L~~L~l~~~~i~~-l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 22 IKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPL 97 (227)
T ss_dssp HHHHTTCSSTTSEE--CHHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCC
T ss_pred HHHHhCCCCcCCcC--CHHHcCCcCEEECCCCCCCc-ch-hHhcCCCCcEeecCCceeeccccccccccccccccccccc
Confidence 34456667777653 34567889999999998864 43 4778899999999999887653 4678888888887766
Q ss_pred H--HHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhCCCCcEEecCCCC-CCCccc
Q 003270 204 A--QAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSCANLRILNSSYCP-NISLES 280 (835)
Q Consensus 204 ~--~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~~~L~~L~l~~~~-~l~~~~ 280 (835)
+ ..+..+++|+.++++++.... ...+...+.++.+.++++. +.... .+. .+++|+.|++++|. .-...+
T Consensus 98 ~~i~~l~~l~~L~~l~l~~~~~~~----~~~~~~~~~~~~l~~~~~~-~~~~~--~~~-~~~~L~~L~l~~n~~~~~~~l 169 (227)
T d1h6ua2 98 KNVSAIAGLQSIKTLDLTSTQITD----VTPLAGLSNLQVLYLDLNQ-ITNIS--PLA-GLTNLQYLSIGNAQVSDLTPL 169 (227)
T ss_dssp SCCGGGTTCTTCCEEECTTSCCCC----CGGGTTCTTCCEEECCSSC-CCCCG--GGG-GCTTCCEEECCSSCCCCCGGG
T ss_pred cccccccccccccccccccccccc----cchhccccchhhhhchhhh-hchhh--hhc-cccccccccccccccccchhh
Confidence 5 456777888888887774222 1224566777788877776 43221 122 67777788777775 222335
Q ss_pred cCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCc
Q 003270 281 VRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNL 321 (835)
Q Consensus 281 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 321 (835)
..+++|++|++++| .+.+. ..++.+++|++|++++|++
T Consensus 170 ~~l~~L~~L~Ls~n-~l~~l--~~l~~l~~L~~L~Ls~N~l 207 (227)
T d1h6ua2 170 ANLSKLTTLKADDN-KISDI--SPLASLPNLIEVHLKNNQI 207 (227)
T ss_dssp TTCTTCCEEECCSS-CCCCC--GGGGGCTTCCEEECTTSCC
T ss_pred cccccceecccCCC-ccCCC--hhhcCCCCCCEEECcCCcC
Confidence 66777777777776 55543 2366677777777777754
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.33 E-value=2e-12 Score=123.10 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=26.1
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCcccccccccCCcccEEeccCcccc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQEIPINHDQLRRLEITKCRVM 184 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 184 (835)
.+|++|++++|.+.+.. .+..+++|++|++++|.+++ ++. +..+++|++|++++|++.
T Consensus 46 ~~L~~L~l~~~~i~~l~--~l~~l~~L~~L~L~~n~i~~-l~~-~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 46 NSIDQIIANNSDIKSVQ--GIQYLPNVTKLFLNGNKLTD-IKP-LANLKNLGWLFLDENKVK 103 (210)
T ss_dssp HTCCEEECTTSCCCCCT--TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCC
T ss_pred cCccEEECcCCCCCCch--hHhhCCCCCEEeCCCccccC-ccc-cccCcccccccccccccc
Confidence 34555555555444321 24445555555555555443 221 234444444444444443
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.30 E-value=7.3e-12 Score=118.12 Aligned_cols=36 Identities=14% Similarity=0.188 Sum_probs=15.0
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCC
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLG 160 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~ 160 (835)
.++++|+++++.+... +.++.+++|++|++++|.++
T Consensus 40 ~~l~~L~l~~~~i~~l--~~l~~l~nL~~L~Ls~N~l~ 75 (199)
T d2omxa2 40 DQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLT 75 (199)
T ss_dssp TTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC
T ss_pred cCCCEEECCCCCCCCc--cccccCCCcCcCcccccccc
Confidence 3444444444444321 12334444444444444443
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.20 E-value=1.1e-11 Score=111.89 Aligned_cols=84 Identities=14% Similarity=0.077 Sum_probs=36.8
Q ss_pred hhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHH--HHHHH
Q 003270 573 LRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSA--IEELL 649 (835)
Q Consensus 573 ~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~--~~~~l 649 (835)
+..+++|++|++++|.++.+++ .+..+++|++|++++|+ +++... +..+..+++|++|++++|.++... -+..+
T Consensus 59 ~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~L~~N~-i~~~~~--l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i 135 (162)
T d1a9na_ 59 FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNS-LVELGD--LDPLASLKSLTYLCILRNPVTNKKHYRLYVI 135 (162)
T ss_dssp CCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCC-CCCGGG--GGGGGGCTTCCEEECCSSGGGGSTTHHHHHH
T ss_pred cccCcchhhhhcccccccCCCccccccccccccceecccc-cccccc--ccccccccccchhhcCCCccccccchHHHHH
Confidence 4444455555555555544433 23344555555555544 433211 111234455555555555443311 12234
Q ss_pred hhCCCccEEE
Q 003270 650 AYCTHLTHVS 659 (835)
Q Consensus 650 ~~~~~L~~L~ 659 (835)
..+++|+.|+
T Consensus 136 ~~lp~L~~LD 145 (162)
T d1a9na_ 136 YKVPQVRVLD 145 (162)
T ss_dssp HHCTTCSEET
T ss_pred HHCCCcCeeC
Confidence 4555555554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=1.1e-11 Score=111.91 Aligned_cols=136 Identities=18% Similarity=0.147 Sum_probs=107.4
Q ss_pred cCcCCCCcccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhh
Q 003270 491 LGICPKLSTLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGL 570 (835)
Q Consensus 491 l~~~~~L~~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 570 (835)
+.++.+++.|++++|++ ..++..+..+++|+.|++++| .+.+ ++ .+..+++|++|++++|.... ..+
T Consensus 14 ~~n~~~lr~L~L~~n~I--------~~i~~~~~~l~~L~~L~Ls~N-~i~~--l~-~~~~l~~L~~L~ls~N~i~~-l~~ 80 (162)
T d1a9na_ 14 YTNAVRDRELDLRGYKI--------PVIENLGATLDQFDAIDFSDN-EIRK--LD-GFPLLRRLKTLLVNNNRICR-IGE 80 (162)
T ss_dssp EECTTSCEEEECTTSCC--------CSCCCGGGGTTCCSEEECCSS-CCCE--EC-CCCCCSSCCEEECCSSCCCE-ECS
T ss_pred ccCcCcCcEEECCCCCC--------CccCccccccccCCEEECCCC-CCCc--cC-CcccCcchhhhhcccccccC-CCc
Confidence 67888999999999998 666777788999999999999 5764 43 37789999999999998654 324
Q ss_pred HhhhhccccceeeecCccccCchH--HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch
Q 003270 571 YSLRSLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ 642 (835)
Q Consensus 571 ~~~~~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~ 642 (835)
..+..+++|++|++++|.+..++. .+..+++|++|++++|+ ++.........+..+++|+.|| +..++.
T Consensus 81 ~~~~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~-i~~~~~~r~~~i~~lp~L~~LD--~~~i~~ 151 (162)
T d1a9na_ 81 GLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLD--FQKVKL 151 (162)
T ss_dssp CHHHHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEET--TEECCH
T ss_pred cccccccccccceeccccccccccccccccccccchhhcCCCc-cccccchHHHHHHHCCCcCeeC--CCCCCH
Confidence 456789999999999999998765 68899999999999998 7654321111235689999988 445544
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.12 E-value=6.5e-11 Score=101.07 Aligned_cols=88 Identities=24% Similarity=0.221 Sum_probs=40.9
Q ss_pred hhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEEecccccccchhhHHHHHhcCCC
Q 003270 548 TTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSL 627 (835)
Q Consensus 548 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~ 627 (835)
+..+++|++|++++|...+. +..++.+++|+.|++++|.+++++. +..+++|++|++++|+ +++... +..+..+
T Consensus 16 l~~l~~L~~L~ls~N~l~~l--p~~~~~l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~-i~~~~~--~~~l~~~ 89 (124)
T d1dcea3 16 LEQLLLVTHLDLSHNRLRAL--PPALAALRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR-LQQSAA--IQPLVSC 89 (124)
T ss_dssp GGGGTTCCEEECCSSCCCCC--CGGGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC-CCSSST--TGGGGGC
T ss_pred cccCCCCCEEECCCCccCcc--hhhhhhhhcccccccccccccccCc-cccccccCeEECCCCc-cCCCCC--chhhcCC
Confidence 34444444444444443221 2344555555555555555555432 4455555555555554 443221 0112345
Q ss_pred CCccEEeCCCcccc
Q 003270 628 PALQELDLSYGTLC 641 (835)
Q Consensus 628 ~~L~~L~l~~n~~~ 641 (835)
++|+.|++++|+++
T Consensus 90 ~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 90 PRLVLLNLQGNSLC 103 (124)
T ss_dssp TTCCEEECTTSGGG
T ss_pred CCCCEEECCCCcCC
Confidence 55555555555544
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.11 E-value=2.1e-11 Score=119.34 Aligned_cols=134 Identities=13% Similarity=0.068 Sum_probs=64.3
Q ss_pred CCcccccccceeEEEeecCCccccc-ccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhh
Q 003270 496 KLSTLGIEALHMVVLELKGCGVLSD-AYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLR 574 (835)
Q Consensus 496 ~L~~l~l~~~~l~~l~~~~~~~l~~-~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 574 (835)
+++.+++++|.+ ..+|. .|.++++|++|++++|. +.+..-+..+..++.++++.+..+..+....+..+.
T Consensus 30 ~l~~L~Ls~n~i--------~~l~~~~f~~l~~L~~L~ls~n~-~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~ 100 (242)
T d1xwdc1 30 NAIELRFVLTKL--------RVIQKGAFSGFGDLEKIEISQND-VLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQ 100 (242)
T ss_dssp CCSEEEEESCCC--------CEECTTTTTTCTTCCEEEEESCT-TCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEE
T ss_pred CCCEEECcCCcC--------CccChhHhhccchhhhhhhcccc-ccceeecccccccccccccccccccccccccccccc
Confidence 445555555555 22332 35566666666666653 222111223455666666666554444444344556
Q ss_pred hccccceeeecCccccCchH--HHhccccccEEecccccccchhhHHHHHhcCCC-CCccEEeCCCcccch
Q 003270 575 SLQNLTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTNTSLESLYKKGSL-PALQELDLSYGTLCQ 642 (835)
Q Consensus 575 ~l~~L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~-~~L~~L~l~~n~~~~ 642 (835)
++++|+.+++++|.+...+. .+..+..+..+...++. +.......+ ..+ ..++.|++++|+++.
T Consensus 101 ~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~---~~~~~~l~~L~l~~n~l~~ 167 (242)
T d1xwdc1 101 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSF---VGLSFESVILWLNKNGIQE 167 (242)
T ss_dssp CCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSS---TTSBSSCEEEECCSSCCCE
T ss_pred ccccccccccchhhhcccccccccccccccccccccccc-ccccccccc---ccccccceeeecccccccc
Confidence 66666666666666654332 22233334333333333 443332222 222 245556666655543
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.10 E-value=3.8e-11 Score=112.36 Aligned_cols=118 Identities=18% Similarity=0.128 Sum_probs=63.9
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP- 594 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~- 594 (835)
..+|..+ .+++++|+|++| .++.......+..+++|++|++++|...... ...+..+++|++|++++|++..+++
T Consensus 21 ~~iP~~l--p~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~-~~~~~~~~~L~~L~Ls~N~l~~l~~~ 96 (192)
T d1w8aa_ 21 KEIPRDI--PLHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQLTGIE-PNAFEGASHIQELQLGENKIKEISNK 96 (192)
T ss_dssp SSCCSCC--CTTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSCCCCEECSS
T ss_pred CccCCCC--CCCCCEEEeCCC-CCcccccccccCCCceEeeeecccccccccc-ccccccccccceeeeccccccccCHH
Confidence 4455433 256666777766 3432222334555666666666665544332 4455556666666666666665544
Q ss_pred HHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccc
Q 003270 595 VFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLC 641 (835)
Q Consensus 595 ~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~ 641 (835)
+|.++++|++|+|++|. |+...+..+ ..+++|++|++++|.+.
T Consensus 97 ~F~~l~~L~~L~L~~N~-l~~i~~~~f---~~l~~L~~l~L~~N~~~ 139 (192)
T d1w8aa_ 97 MFLGLHQLKTLNLYDNQ-ISCVMPGSF---EHLNSLTSLNLASNPFN 139 (192)
T ss_dssp SSTTCTTCCEEECCSSC-CCEECTTSS---TTCTTCCEEECTTCCBC
T ss_pred HHhCCCcccccccCCcc-ccccCHHHh---cCCcccccccccccccc
Confidence 45556666666666655 555444332 44555666666555443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.10 E-value=2.5e-11 Score=118.82 Aligned_cols=196 Identities=15% Similarity=0.094 Sum_probs=98.0
Q ss_pred CcCcEEEcCCcccChhhHHhhcCCCCCCEEEecCCCCCccccc-ccccCCcccEEeccC-ccccccccCCCCCcEEEecc
Q 003270 123 RNLEALTLGRGQLGDAFFHALADCSMLKSLNVNDATLGNGVQE-IPINHDQLRRLEITK-CRVMRVSIRCPQLEHLSLKR 200 (835)
Q Consensus 123 ~~L~~L~l~~~~i~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~-~~~~~~~~~l~~L~~L~l~~ 200 (835)
+++++|++++|.++...+.+|.++++|++|++++|.+...++. .+.++++++++.+.. +.+.....
T Consensus 29 ~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~------------ 96 (242)
T d1xwdc1 29 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINP------------ 96 (242)
T ss_dssp SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECT------------
T ss_pred CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccccccc------------
Confidence 4677777777777655555677777777777777766554432 455566666666543 22222110
Q ss_pred cchHHHhhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCCEEeCCCCCCCChHHHHHHHHhC-CCCcEEecCCCC--CCC
Q 003270 201 SNMAQAVLNCPLLHLLDIASCHKLSDAAIRLAATSCPQLESLDMSNCSCVSDESLREIALSC-ANLRILNSSYCP--NIS 277 (835)
Q Consensus 201 ~~i~~~~~~~~~L~~L~l~~~~~l~~~~l~~~~~~~~~L~~L~L~~~~~l~~~~~~~~~~~~-~~L~~L~l~~~~--~l~ 277 (835)
..+..+++|+++++++| .+...........++.+..+...++. +.......+. .+ ..++.|+++++. .++
T Consensus 97 ----~~~~~l~~L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~-l~~i~~~~~~-~~~~~l~~L~l~~n~l~~i~ 169 (242)
T d1xwdc1 97 ----EAFQNLPNLQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNIN-IHTIERNSFV-GLSFESVILWLNKNGIQEIH 169 (242)
T ss_dssp ----TSEECCTTCCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTT-CCEECTTSST-TSBSSCEEEECCSSCCCEEC
T ss_pred ----ccccccccccccccchh-hhcccccccccccccccccccccccc-cccccccccc-cccccceeeecccccccccc
Confidence 22344444555555444 22211111111222233333333332 2221111111 22 355666666554 344
Q ss_pred ccccCCCCCcEEecCCCCCCChhhHHHhhhccCccEEEccCCCccccccccCcccceeec
Q 003270 278 LESVRLPMLTVLQLHSCEGITSASMAAISHSYMLEVLELDNCNLLTSVSLELPRLQNIRL 337 (835)
Q Consensus 278 ~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~L~~L~~ 337 (835)
.......+++++....+..++......+.++++|++|++++|.+..-.+..+.+++.|..
T Consensus 170 ~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~ 229 (242)
T d1xwdc1 170 NCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRA 229 (242)
T ss_dssp TTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEES
T ss_pred cccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCccccc
Confidence 444555666555443333565554555777888888888888755322233555555443
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.08 E-value=6.7e-11 Score=101.00 Aligned_cols=101 Identities=24% Similarity=0.226 Sum_probs=72.1
Q ss_pred ccccccceeEEEeecCCcccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccc
Q 003270 499 TLGIEALHMVVLELKGCGVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQN 578 (835)
Q Consensus 499 ~l~l~~~~l~~l~~~~~~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~ 578 (835)
.+++++|.+ ..++. +..+++|++|++++| .+++ +|..+..+++|+.|++++|...+. +.+..+++
T Consensus 2 ~L~Ls~n~l--------~~l~~-l~~l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N~i~~l---~~~~~l~~ 66 (124)
T d1dcea3 2 VLHLAHKDL--------TVLCH-LEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNALENV---DGVANLPR 66 (124)
T ss_dssp EEECTTSCC--------SSCCC-GGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSCCCCC---GGGTTCSS
T ss_pred EEEcCCCCC--------CCCcc-cccCCCCCEEECCCC-ccCc--chhhhhhhhccccccccccccccc---Cccccccc
Confidence 355566665 33432 567778888888887 4643 666677788888888888875542 35778888
Q ss_pred cceeeecCccccCchH--HHhccccccEEecccccccch
Q 003270 579 LTMLDLSYTFLTNLEP--VFESCLQLKVLKLQACKYLTN 615 (835)
Q Consensus 579 L~~L~Ls~~~~~~l~~--~~~~~~~L~~L~l~~~~~l~~ 615 (835)
|++|++++|++.+++. .+..+++|+.|++++|+ +++
T Consensus 67 L~~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~-i~~ 104 (124)
T d1dcea3 67 LQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS-LCQ 104 (124)
T ss_dssp CCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSG-GGG
T ss_pred cCeEECCCCccCCCCCchhhcCCCCCCEEECCCCc-CCc
Confidence 8888888888887653 57778888888888887 653
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.05 E-value=3.3e-11 Score=112.74 Aligned_cols=128 Identities=21% Similarity=0.175 Sum_probs=105.7
Q ss_pred cceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccEEe
Q 003270 528 LTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLK 606 (835)
Q Consensus 528 L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~ 606 (835)
.+.++.+++ +++. +|..+ .+++++|++++|+.........|..+++|++|++++|.+..++. .+..+++|++|+
T Consensus 10 ~~~v~Cs~~-~L~~--iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~ 84 (192)
T d1w8aa_ 10 GTTVDCTGR-GLKE--IPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQ 84 (192)
T ss_dssp TTEEECTTS-CCSS--CCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCEEEEeCC-CcCc--cCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceee
Confidence 356777776 5653 55433 26899999999997655445678999999999999999998655 888999999999
Q ss_pred cccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCCC
Q 003270 607 LQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCGN 665 (835)
Q Consensus 607 l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~~ 665 (835)
+++|+ ++...+.. |.++++|++|++++|+++. ..+..|..+++|++|++++|+-
T Consensus 85 Ls~N~-l~~l~~~~---F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~~ 138 (192)
T d1w8aa_ 85 LGENK-IKEISNKM---FLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNPF 138 (192)
T ss_dssp CCSCC-CCEECSSS---STTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCCB
T ss_pred ecccc-ccccCHHH---HhCCCcccccccCCccccc-cCHHHhcCCccccccccccccc
Confidence 99998 88776654 4889999999999999987 4567789999999999999974
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.94 E-value=7.8e-11 Score=110.15 Aligned_cols=131 Identities=19% Similarity=0.131 Sum_probs=75.1
Q ss_pred ccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhc
Q 003270 519 SDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFES 598 (835)
Q Consensus 519 ~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~ 598 (835)
+..+..+++|++|++++| ++++ ++ .+..+++|++|++++|..... +.....+++|++|++++|+++.++ .+..
T Consensus 41 ~~sl~~L~~L~~L~Ls~n-~I~~--i~-~l~~l~~L~~L~Ls~N~i~~i--~~~~~~~~~L~~L~l~~N~i~~l~-~~~~ 113 (198)
T d1m9la_ 41 DATLSTLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNLIKKI--ENLDAVADTLEELWISYNQIASLS-GIEK 113 (198)
T ss_dssp HHHHHHTTTCCEEECSEE-EESC--CC-CHHHHTTCCEEECCEEEECSC--SSHHHHHHHCCEEECSEEECCCHH-HHHH
T ss_pred hhHHhcccccceeECccc-CCCC--cc-cccCCccccChhhcccccccc--cccccccccccccccccccccccc-cccc
Confidence 344555666666666665 3443 32 255666666666666653321 122334456777777777777653 3566
Q ss_pred cccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHH---------HHHHHhhCCCccEEE
Q 003270 599 CLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSA---------IEELLAYCTHLTHVS 659 (835)
Q Consensus 599 ~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~---------~~~~l~~~~~L~~L~ 659 (835)
+++|+.|++++|. +++... +..+..+++|+.|++++|++.... ....+..+++|+.||
T Consensus 114 l~~L~~L~L~~N~-i~~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 114 LVNLRVLYMSNNK-ITNWGE--IDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHSSEEEESEEE-CCCHHH--HHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred cccccccccccch-hccccc--cccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence 6777777777766 654422 112366777777777777654311 112356678888775
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=98.87 E-value=4.2e-10 Score=105.04 Aligned_cols=127 Identities=18% Similarity=0.183 Sum_probs=100.3
Q ss_pred CcceEecccC-CCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHHHhccccccEE
Q 003270 527 LLTSLDASFC-SQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPVFESCLQLKVL 605 (835)
Q Consensus 527 ~L~~L~ls~~-~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~~~~~~~L~~L 605 (835)
.++.+++++. +.+ ..++..+..+++|++|++++|.... ...+..+++|++|++++|.++.++.....+++|++|
T Consensus 24 ~~~~~~l~~~~~~i--~~l~~sl~~L~~L~~L~Ls~n~I~~---i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L 98 (198)
T d1m9la_ 24 EAEKVELHGMIPPI--EKMDATLSTLKACKHLALSTNNIEK---ISSLSGMENLRILSLGRNLIKKIENLDAVADTLEEL 98 (198)
T ss_dssp TCSCEECCBCCTTC--CCCHHHHHHTTTCCEEECSEEEESC---CCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEE
T ss_pred ccceeeeecccCch--hhhhhHHhcccccceeECcccCCCC---cccccCCccccChhhccccccccccccccccccccc
Confidence 3455566542 222 2255668899999999999998543 236889999999999999999988777778899999
Q ss_pred ecccccccchhhHHHHHhcCCCCCccEEeCCCcccchHHHHHHHhhCCCccEEEccCCC
Q 003270 606 KLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQSAIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 606 ~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~~~~L~~L~l~~~~ 664 (835)
++++|. ++... .+ ..+++|+.|++++|++++......+..+++|++|++++|+
T Consensus 99 ~l~~N~-i~~l~--~~---~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~ 151 (198)
T d1m9la_ 99 WISYNQ-IASLS--GI---EKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ECSEEE-CCCHH--HH---HHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred cccccc-ccccc--cc---cccccccccccccchhccccccccccCCCccceeecCCCc
Confidence 999998 88653 23 4578999999999999873333568899999999999997
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.62 E-value=2.5e-08 Score=88.62 Aligned_cols=107 Identities=23% Similarity=0.149 Sum_probs=69.9
Q ss_pred CCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchH-HHhccccccE
Q 003270 526 PLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKV 604 (835)
Q Consensus 526 ~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~ 604 (835)
...+.++.+++ ++.+ .+..+..+++|++|++.+++.+......+|.++++|+.|++++|+++.+++ +|..+++|++
T Consensus 8 ~~~~~l~c~~~-~~~~--~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~ 84 (156)
T d2ifga3 8 HGSSGLRCTRD-GALD--SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84 (156)
T ss_dssp SSSSCEECCSS-CCCT--TTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCE
T ss_pred CCCCeEEecCC-CCcc--CcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccc
Confidence 33445666654 3332 445556667777777776665655555677778888888888888877644 6777888888
Q ss_pred EecccccccchhhHHHHHhcCCCCCccEEeCCCccc
Q 003270 605 LKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTL 640 (835)
Q Consensus 605 L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~ 640 (835)
|+|++|+ ++......+ . ...|+.|++++|.+
T Consensus 85 L~Ls~N~-l~~l~~~~~---~-~~~l~~L~L~~Np~ 115 (156)
T d2ifga3 85 LNLSFNA-LESLSWKTV---Q-GLSLQELVLSGNPL 115 (156)
T ss_dssp EECCSSC-CSCCCSTTT---C-SCCCCEEECCSSCC
T ss_pred eeccCCC-CcccChhhh---c-cccccccccCCCcc
Confidence 8888877 665443332 2 33577777777765
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=9.3e-08 Score=84.80 Aligned_cols=94 Identities=16% Similarity=0.007 Sum_probs=75.6
Q ss_pred cccccccccCCCcceEecccCCCCccchhhhhhhcCCCccEEeccCCCCcCchhhHhhhhccccceeeecCccccCchHH
Q 003270 516 GVLSDAYINCPLLTSLDASFCSQLKDDCLSATTTSCPLIESLILMSCQSIGPDGLYSLRSLQNLTMLDLSYTFLTNLEPV 595 (835)
Q Consensus 516 ~~l~~~~~~~~~L~~L~ls~~~~l~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~Ls~~~~~~l~~~ 595 (835)
..+|..+..+++|++|++.+++.++. .-+..|.++++|+.|++++|+.. .+.+.+|..+++|++|+|++|+++.+|..
T Consensus 21 ~~~p~~l~~l~~l~~L~l~~n~~l~~-i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~ 98 (156)
T d2ifga3 21 LDSLHHLPGAENLTELYIENQQHLQH-LELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSFNALESLSWK 98 (156)
T ss_dssp CTTTTTSCSCSCCSEEECCSCSSCCE-ECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCSSCCSCCCST
T ss_pred ccCcccccCccccCeeecCCCccccc-cCchhhccccccCcceeeccccC-CcccccccccccccceeccCCCCcccChh
Confidence 45666677889999999987755654 12345788999999999999854 44467899999999999999999998885
Q ss_pred HhccccccEEeccccc
Q 003270 596 FESCLQLKVLKLQACK 611 (835)
Q Consensus 596 ~~~~~~L~~L~l~~~~ 611 (835)
.....+|+.|+|++|+
T Consensus 99 ~~~~~~l~~L~L~~Np 114 (156)
T d2ifga3 99 TVQGLSLQELVLSGNP 114 (156)
T ss_dssp TTCSCCCCEEECCSSC
T ss_pred hhccccccccccCCCc
Confidence 5555689999999998
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.39 E-value=1.5e-06 Score=77.81 Aligned_cols=119 Identities=12% Similarity=0.143 Sum_probs=78.8
Q ss_pred hhhhhhcCCCccEEeccCCCCcCchhh----HhhhhccccceeeecCccccC-----chHHHhccccccEEecccccccc
Q 003270 544 LSATTTSCPLIESLILMSCQSIGPDGL----YSLRSLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQACKYLT 614 (835)
Q Consensus 544 ~~~~~~~~~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~Ls~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~ 614 (835)
+.....+.+.|++|+++++..++..+. .++...++|++|++++|.+.. +...+...+.|++|++++|. ++
T Consensus 7 l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~ 85 (167)
T d1pgva_ 7 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LT 85 (167)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CC
T ss_pred HHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cc
Confidence 333444556666666665544444333 234456777777777777762 44466777888888888887 88
Q ss_pred hhhHHHHHh-cCCCCCccEEeCCCcccc---h---HHHHHHHhhCCCccEEEccCC
Q 003270 615 NTSLESLYK-KGSLPALQELDLSYGTLC---Q---SAIEELLAYCTHLTHVSLNGC 663 (835)
Q Consensus 615 ~~~~~~l~~-~~~~~~L~~L~l~~n~~~---~---~~~~~~l~~~~~L~~L~l~~~ 663 (835)
+.+...+.. +...++|++|++++|.+. + ..+...+...++|++|+++.+
T Consensus 86 ~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~ 141 (167)
T d1pgva_ 86 PELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 141 (167)
T ss_dssp HHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred hHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence 777766643 567788888888877433 2 135666777888888888765
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=98.13 E-value=7e-06 Score=73.42 Aligned_cols=117 Identities=18% Similarity=0.168 Sum_probs=74.1
Q ss_pred hhhcCCCccEEeccCCCCcCchhhH----hhhhccccceeeecCccccC-----chHHHhccccccEEecccccccchhh
Q 003270 547 TTTSCPLIESLILMSCQSIGPDGLY----SLRSLQNLTMLDLSYTFLTN-----LEPVFESCLQLKVLKLQACKYLTNTS 617 (835)
Q Consensus 547 ~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~l~~L~~L~Ls~~~~~~-----l~~~~~~~~~L~~L~l~~~~~l~~~~ 617 (835)
...+.+.|++|+++++..++..+.. ++...++|++|++++|.++. +...+...++++.+++++|+ +++.+
T Consensus 12 ~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~-~~~~g 90 (166)
T d1io0a_ 12 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNF-ISGSG 90 (166)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSC-CCHHH
T ss_pred HHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccc-ccchh
Confidence 3345556666666654444444332 33456777777777777663 33456677888888888887 77666
Q ss_pred HHHHHh-cCCCCCccEEeC--CCcccchH---HHHHHHhhCCCccEEEccCCC
Q 003270 618 LESLYK-KGSLPALQELDL--SYGTLCQS---AIEELLAYCTHLTHVSLNGCG 664 (835)
Q Consensus 618 ~~~l~~-~~~~~~L~~L~l--~~n~~~~~---~~~~~l~~~~~L~~L~l~~~~ 664 (835)
...+.. +...++|+.+++ ++|.+.+. .+...+..++.|++|+++.+.
T Consensus 91 ~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~ 143 (166)
T d1io0a_ 91 ILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ 143 (166)
T ss_dssp HHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence 665533 466777877555 45667653 355566778888888887654
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.97 E-value=3.5e-05 Score=68.63 Aligned_cols=45 Identities=18% Similarity=0.276 Sum_probs=20.7
Q ss_pred HHhcCCCeeEEEccCCcchhhH----HHHHHhhCCcCcEEEcCCcccCh
Q 003270 93 VCQRYPNATEVNIYGAPAIHLL----VMKAVSLLRNLEALTLGRGQLGD 137 (835)
Q Consensus 93 ~~~~~~~l~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~i~~ 137 (835)
+....|++++|++++++.+.+. +..++...++|++|++++|.+++
T Consensus 10 l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~ 58 (167)
T d1pgva_ 10 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISD 58 (167)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBH
T ss_pred HHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccch
Confidence 3334455556655543223321 22334444555555555555543
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.93 E-value=2e-06 Score=76.56 Aligned_cols=83 Identities=22% Similarity=0.211 Sum_probs=52.0
Q ss_pred hhhccccceeeecCccccCc---hHHHhccccccEEecccccccchhhHHHHHhcCCCCCccEEeCCCcccch------H
Q 003270 573 LRSLQNLTMLDLSYTFLTNL---EPVFESCLQLKVLKLQACKYLTNTSLESLYKKGSLPALQELDLSYGTLCQ------S 643 (835)
Q Consensus 573 ~~~l~~L~~L~Ls~~~~~~l---~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~~~~~~~L~~L~l~~n~~~~------~ 643 (835)
...+++|++|+|++|+++.+ +..+..+++|+.|++++|. +++...... +. ...|+.|++++|.++. .
T Consensus 61 ~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~--l~-~~~L~~L~L~~Npl~~~~~~~~~ 136 (162)
T d1koha1 61 EENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDK--IK-GLKLEELWLDGNSLSDTFRDQST 136 (162)
T ss_dssp HHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHH--HT-TCCCSSCCCTTSTTSSSSSSHHH
T ss_pred HHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCc-cccchhhhh--hh-ccccceeecCCCCcCcCcccchh
Confidence 34677777777777777754 3356667777777777777 665443221 22 3357777777776653 1
Q ss_pred HHHHHHhhCCCccEEE
Q 003270 644 AIEELLAYCTHLTHVS 659 (835)
Q Consensus 644 ~~~~~l~~~~~L~~L~ 659 (835)
.....+..+|+|+.||
T Consensus 137 y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 YISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHTTSTTCCEET
T ss_pred HHHHHHHHCCCCCEEC
Confidence 2345566778888775
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.85 E-value=0.00012 Score=65.02 Aligned_cols=49 Identities=12% Similarity=0.092 Sum_probs=24.3
Q ss_pred hhHHHHHHhhCCcCcEEEcCC-cccChh----hHHhhcCCCCCCEEEecCCCCC
Q 003270 112 HLLVMKAVSLLRNLEALTLGR-GQLGDA----FFHALADCSMLKSLNVNDATLG 160 (835)
Q Consensus 112 ~~~~~~~l~~~~~L~~L~l~~-~~i~~~----~~~~l~~~~~L~~L~l~~~~~~ 160 (835)
...+.......++|++|++++ +.+++. +..++...++|++|++++|.++
T Consensus 6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~ 59 (166)
T d1io0a_ 6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSN 59 (166)
T ss_dssp HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCC
T ss_pred HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCccc
Confidence 333444444555666666654 344433 3334445555555555555443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.70 E-value=1.3e-05 Score=71.06 Aligned_cols=89 Identities=24% Similarity=0.182 Sum_probs=54.6
Q ss_pred hhhhhcCCCccEEeccCCCCcCchh-hHhhhhccccceeeecCccccCchH-HHhccccccEEecccccccchhhH---H
Q 003270 545 SATTTSCPLIESLILMSCQSIGPDG-LYSLRSLQNLTMLDLSYTFLTNLEP-VFESCLQLKVLKLQACKYLTNTSL---E 619 (835)
Q Consensus 545 ~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~---~ 619 (835)
+.....+++|++|++++|+.....+ ...+..+++|+.|++++|.++.+++ .+.....|++|++++|+ +..... .
T Consensus 58 ~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np-l~~~~~~~~~ 136 (162)
T d1koha1 58 RIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS-LSDTFRDQST 136 (162)
T ss_dssp HHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST-TSSSSSSHHH
T ss_pred HHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC-cCcCcccchh
Confidence 3334566777777777776544322 2456677888888888888887665 33344568888888887 543211 1
Q ss_pred HH-HhcCCCCCccEEe
Q 003270 620 SL-YKKGSLPALQELD 634 (835)
Q Consensus 620 ~l-~~~~~~~~L~~L~ 634 (835)
.. .-+..+|+|+.||
T Consensus 137 y~~~i~~~~P~L~~LD 152 (162)
T d1koha1 137 YISAIRERFPKLLRLD 152 (162)
T ss_dssp HHHHHHTTSTTCCEET
T ss_pred HHHHHHHHCCCCCEEC
Confidence 00 0135678888776
|
| >d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: F-box domain superfamily: F-box domain family: F-box domain domain: Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.38 E-value=0.052 Score=33.92 Aligned_cols=32 Identities=16% Similarity=0.248 Sum_probs=25.4
Q ss_pred HHHHhhhccccchhhhHHHHHHHHhhcCCCCc
Q 003270 44 LQKQKIWKSGWILQMTYCIWQWRAASAHEDFW 75 (835)
Q Consensus 44 l~~~~~~~~~~~~~~~~v~~~W~~~~~~~~~~ 75 (835)
..++..+......+++.|||+|+++..++..|
T Consensus 10 ~~If~~L~~~dl~~~~~Vcr~w~~l~~~~~lW 41 (41)
T d1fs1a1 10 LGIFSCLCLPELLKVSGVCKRWYRLASDESLW 41 (41)
T ss_dssp HHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCcccC
Confidence 45566666666778899999999998888776
|