Citrus Sinensis ID: 003271

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-----
Protein Sequence
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEHHHHHHHHHHHHHHHHcccccccccEEEEccccEEEEHHHHHHHHHHHHHcccccHHHHcccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHccccccccHHHHcccccccccccccccccHHHHHHHHHccccccccEEccccccHHHHHHHHccccccccccccccccccccccccccccEEEEEcccccccccEEccccccccHHHccccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccccccccccccEEcccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEEEEccccEEEEEEcccccEEEEEccccccEEEccccccEEEEEEccccccccccccccEEccccccccEEEEccccEEEEEEEEccccEEEEEcccccEEccccccccEEccEEEEEEcccccccccccEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccEEEEEcccccEEcccccccccEEEEEEcccccEEEEEcccccEEEccccccccEEcccccccccEEEEEEcccccEEEEEccccccEEEEEcccccEEEEEEccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEccccccEEEEEEcccccEEEEEEccccEEEcc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccHHcccccHHHHHHHccccccccccEEEcccccHHHHHHccccccccccccccccccccccccccccccEEEccccccccccccccccccccHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHEccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccHcccccccccEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEccccccEEEEcccccccEEEEccccccccccEEEEEEcccccEEEEccccccEEEEEEEEccccccEEEEEEcccccEEEcccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEccccEEEEEEccccccccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEEEEcccccEEEEcccccEEEEEc
Coil and Loop (DISEMBL)
msqnnweadKMLDVYIYDYLLKRKLHASAKAFQtegkvstdpvaidapggfLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTqhlndtgddlrpgfAKAFTTKMYEDRlkklpfqrdslddatikprlsdnmtqlldpNHATLLKAaaigsqpsgqtlhgthgvsqqvqsrsqqpplstqevktemnptmnpraagsegsligvhgsnqgagnvtlkgwpltgldqfRSGLLQQQKSLTQPYNQLQLQQLMLQAQQnlaspsandlesRKLRMLHnsrnmglardgssnsvgDLVSTVGSAmqiispglprgdndLLIKIQQQQQQLqhyshhplssqqsqnsnpllQQQDkilaggsmtmdgsmsntfqgndqasknqigrkrkqavsssgpanssgtantpgptpsspsspsthtpgdvisrptlqhngassksllmfgsdgmgsltsapnqltdmdrfvddgslddnvesflspddadprdrvgrsaevgkgftftefqlipastskveschfspdgkllatgghdkkAVLWCTESFTVKSTLEEHTQWitdvrfspslsrlatssadrtvrvwdtenpdyslrtftghsttvmsldfhpskedllcscdnnseirywsinngscagvfksgatqmrFQPRLGRILAAAIENYISILDVETQVCRLKLqghknqvhsvcwntsgeYLASVSDELVRVWsigsgskgecihelsctgnkfhscvfhptfpsllVIGCYETLELWnmtenktltLSAHDKLVSSLAASTVNGMVAsashdkcvkiwk
Flexible Loop (DISEMBL)
msqnnweadkMLDVYIYDYLLKRKLHASAKAFqtegkvstdpvAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDstqhlndtgddlrpGFAKAFTTKMYedrlkklpfqrdslddatikPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQqvqsrsqqpplstQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRnmglardgssnsVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQavsssgpanssgtantpgptpsspsspSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVEsflspddadprdrVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTqwitdvrfspslsrlatssadrtvrvwdtenpdyslrtftGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNgmvasashdkcvkiwk
Low Complexity Region (SEG)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREqqqqqqqqhqkpqqhqqmqvqqlllqrhaqqqqqqqrrDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGvsqqvqsrsqqPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYnqlqlqqlmlqaqqnlaSPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIqqqqqqlqhyshhplssqqsqnsnpllqqqDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANssgtantpgptpsspsspsthtpgDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered region (IsUnstruct)
*******ADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIART**********************************************************************************************************************************************************************************************AGNVTLKGWPLTGLDQFRSGLL************************************************************************************LI******************************************************************************************************************************************************************************GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA*****KCVK***
Disordered Region (DISOPRED)
******E*DKMLDVYIYDYLLKRKLHA*************DPVAIDAPGGFLFEWWSVFWDIFIA*******************************************************************************KAFTTKMYED**********************************************************************************************IG***SNQGAGNVTLKGWPLTGLDQFRSGLL*************************************KLRMLHNSRNMGL**D**SNSVGDLVSTV*****************LLIKI**********************************AGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered Region (DISEMBL)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKA********TDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQ*************************************************LNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPS*******************************MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKI*************************LLQQQDKILAGGSMTMDGSMSNTFQG***********************************************GDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Disordered Region (DISPRO)
****NWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKP**************************************LRPG*********YEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAI*************GVSQQVQSRSQ*P*LSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLA**SANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYS**************************SMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	835	2.2.26 [Sep-21-2011]
Q9FUY2	931	Transcriptional corepress	yes	no	0.846	0.759	0.584	0.0
Q8YRI1	1526	Uncharacterized WD repeat	yes	no	0.334	0.182	0.340	6e-33
Q00808	1356	Vegetative incompatibilit	yes	no	0.364	0.224	0.303	2e-29
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.318	0.211	0.298	4e-25
P0CS42	433	Nuclear distribution prot	yes	no	0.320	0.618	0.275	1e-23
P0CS43	433	Nuclear distribution prot	N/A	no	0.320	0.618	0.275	1e-23
C4Q0P6	417	Lissencephaly-1 homolog O	N/A	no	0.319	0.640	0.282	7e-23
P49695	742	Probable serine/threonine	no	no	0.322	0.362	0.303	2e-21
O22212	554	U4/U6 small nuclear ribon	no	no	0.319	0.481	0.283	3e-21
A7S338	409	Lissencephaly-1 homolog O	N/A	no	0.318	0.650	0.269	1e-20

>sp|Q9FUY2|LEUNG_ARATH Transcriptional corepressor LEUNIG OS=Arabidopsis thaliana GN=LUG PE=1 SV=2

 Score =  847 bits (2188), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/751 (58%), Positives = 559/751 (74%), Gaps = 44/751 (5%)

Query: 125 RRDSTQHLNDTGDDL-----------RPGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKP 173
           RRD +   N + + L            PG   +  +K YE+R+K +P QR+SLD+A +K 
Sbjct: 185 RRDGSHLANGSANGLVGNNSEPVMRQNPGSGSSLASKAYEERVK-MPTQRESLDEAAMK- 242

Query: 174 RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQQVQSRSQQPPLSTQEVKTE 232
           R  DN+ QLLDP+HA++LK+AA   QP+GQ LH T G +S QVQ+R+QQ P S  ++K+E
Sbjct: 243 RFGDNVGQLLDPSHASILKSAAASGQPAGQVLHSTSGGMSPQVQTRNQQLPGSAVDIKSE 302

Query: 233 MNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSL--TQPYN 290
           +NP + PR A  EGSLIG+ GSNQG+ N+TLKGWPLTG DQ RSGLLQQQK    +Q ++
Sbjct: 303 INPVLTPRTAVPEGSLIGIPGSNQGSNNLTLKGWPLTGFDQLRSGLLQQQKPFMQSQSFH 362

Query: 291 QLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
           QL +      QQLML AQQNL S S ++ E+R+L+ML N+R+M L +DG  +SVGD++  
Sbjct: 363 QLNMLTPQHQQQLML-AQQNLNSQSVSE-ENRRLKMLLNNRSMTLGKDGLGSSVGDVLPN 420

Query: 345 VGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSHH-------------------PLSSQ 385
           VGS++Q     LPRGD D+L+K++    Q Q  +                      L++ 
Sbjct: 421 VGSSLQPGGSLLPRGDTDMLLKLKMALLQQQQQNQQQGGGNPPQPQPQPQPLNQLALTNP 480

Query: 386 QSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSG 445
           Q Q+SN  + QQ+K+  GGS+TMDGS+SN+F+GN+Q  KNQ GRKRKQ VSSSGPANSSG
Sbjct: 481 QPQSSNHSIHQQEKLGGGGSITMDGSISNSFRGNEQVLKNQSGRKRKQPVSSSGPANSSG 540

Query: 446 TANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTD 504
           TANT GP+PSS  S  + HTPGDVIS P L H+G SSKS++MFG++G G+LTS  NQL D
Sbjct: 541 TANTAGPSPSSAPSTPSTHTPGDVISMPNLPHSGGSSKSMMMFGTEGTGTLTSPSNQLAD 600

Query: 505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS 564
           MDRFV+DGSLDDNVESFLS +D D RD V R  +V KGFTFTE   + AST+KV  CHFS
Sbjct: 601 MDRFVEDGSLDDNVESFLSQEDGDQRDAVTRCMDVSKGFTFTEVNSVRASTTKVTCCHFS 660

Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
            DGK+LA+ GHDKKAVLW T++   K+TLEEHT  ITD+RFSPS  RLATSS D+TVRVW
Sbjct: 661 SDGKMLASAGHDKKAVLWYTDTMKPKTTLEEHTAMITDIRFSPSQLRLATSSFDKTVRVW 720

Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
           D +N  YSLRTF GHS+ V SLDFHP K+DL+CSCDN++EIRYWSINNGSC  V+K G+T
Sbjct: 721 DADNKGYSLRTFMGHSSMVTSLDFHPIKDDLICSCDNDNEIRYWSINNGSCTRVYKGGST 780

Query: 685 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL 744
           Q+RFQPR+G+ LAA+  N +++LDVETQ  R  LQGH N ++SVCW+ SG++LASVS+++
Sbjct: 781 QIRFQPRVGKYLAASSANLVNVLDVETQAIRHSLQGHANPINSVCWDPSGDFLASVSEDM 840

Query: 745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS 804
           V+VW++G+GS+GEC+HELSC GNKF SCVFHP +PSLLVIGCY++LELWNM+ENKT+TL 
Sbjct: 841 VKVWTLGTGSEGECVHELSCNGNKFQSCVFHPAYPSLLVIGCYQSLELWNMSENKTMTLP 900

Query: 805 AHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           AH+ L++SLA ST  G+VASASHDK VK+WK
Sbjct: 901 AHEGLITSLAVSTATGLVASASHDKLVKLWK 931

Transcription repressor subunit of the SEU-LUG transcriptional corepressor of the C class floral homeotic gene AGAMOUS during the early stages of floral meristem development. Is part of the A class cadastral complex that define the boundaries between the A and C class homeotic genes expression and function. Interacts together with APETALA2 and SEUSS to repress AGAMOUS expression. Also plays a role in ovule and pollen development.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score =  143 bits (360), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 99/291 (34%), Positives = 151/291 (51%), Gaps = 12/291 (4%)

Query: 550  LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
            ++   TS V S  F+PDG  LA+G  D+   LW   S     T + HT W+  V F+P  
Sbjct: 1195 ILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGHTSWVNSVVFNPDG 1254

Query: 610  SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
            S LA+ S+D+TVR+WD  +    L TF GH+  V S+ F+P    +L S   +  +R W 
Sbjct: 1255 SMLASGSSDKTVRLWDISSSK-CLHTFQGHTNWVNSVAFNPDGS-MLASGSGDQTVRLWE 1312

Query: 670  INNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH 726
            I++  C   F+   S  + + F P    + + + +  + +  + +  C     GH N V 
Sbjct: 1313 ISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSGECLYTFLGHTNWVG 1372

Query: 727  SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785
            SV ++  G  LAS S D+ VR+WSI   S G+C++ L    N   S VF P   +LL  G
Sbjct: 1373 SVIFSPDGAILASGSGDQTVRLWSI---SSGKCLYTLQGHNNWVGSIVFSPD-GTLLASG 1428

Query: 786  CYE-TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
              + T+ LWN++  + L TL  H   V S+A S+   ++AS S D+ +K+W
Sbjct: 1429 SDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDDETIKLW 1479

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score =  131 bits (329), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/323 (30%), Positives = 155/323 (47%), Gaps = 19/323 (5%)

Query: 522  LSPDDADPRDRVG-----RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
             SPD    R+RV      ++ ++    + T  Q +     +V+S  FSPDG+ +A+G  D
Sbjct: 891  FSPD----RERVASGSDDKTIKIWDAASGTCTQTLEGHGGRVQSVAFSPDGQRVASGSDD 946

Query: 577  KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF 636
                +W   S T   TLE H   +  V FSP   R+A+ S D+T+++WDT +   + +T 
Sbjct: 947  HTIKIWDAASGTCTQTLEGHGSSVLSVAFSPDGQRVASGSGDKTIKIWDTASGTCT-QTL 1005

Query: 637  TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQ-MRFQPRLG 693
             GH  +V S+ F P  + +    D+ + I+ W   +G+C    +   G  Q + F P   
Sbjct: 1006 EGHGGSVWSVAFSPDGQRVASGSDDKT-IKIWDTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064

Query: 694  RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS 752
            R+ + + ++ I I D  +  C   L+GH + V SV ++  G+ +AS S D  +++W   S
Sbjct: 1065 RVASGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQRVASGSIDGTIKIWDAAS 1124

Query: 753  GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVS 811
            G+   C   L   G   HS  F P    +       T+++W+      T TL  H   V 
Sbjct: 1125 GT---CTQTLEGHGGWVHSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVQ 1181

Query: 812  SLAASTVNGMVASASHDKCVKIW 834
            S+A S     VAS S DK +KIW
Sbjct: 1182 SVAFSPDGQRVASGSSDKTIKIW 1204

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score =  117 bits (293), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 83/278 (29%), Positives = 144/278 (51%), Gaps = 12/278 (4%)

Query: 563  FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
            FSPD ++LA+G +DK   LW  ++    S+LE HT +I  + FSP    LA++S D +VR
Sbjct: 944  FSPDRQILASGSNDKTVKLWDWQTGKYISSLEGHTDFIYGIAFSPDSQTLASASTDSSVR 1003

Query: 623  VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682
            +W+        +    H+  V ++ FHP  + ++ +   +  ++ W+I+ G C       
Sbjct: 1004 LWNISTGQ-CFQILLEHTDWVYAVVFHPQGK-IIATGSADCTVKLWNISTGQCLKTLSEH 1061

Query: 683  ATQ---MRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738
            + +   M + P  G++LA A+ +  + + D  T  C   L+GH N+V+S  ++ +GE +A
Sbjct: 1062 SDKILGMAWSPD-GQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIFSPNGEIIA 1120

Query: 739  SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE 797
            + S D+ V++W      +G+C+  L+   N      F P    L      +T+ +W++  
Sbjct: 1121 TCSTDQTVKIW---DWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVRIWDVNT 1177

Query: 798  NKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKIW 834
             K   +   H  LVSS+A S    +VAS S D+ V+IW
Sbjct: 1178 GKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIW 1215

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P0CS42|LIS1_CRYNJ Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=PAC1 PE=3 SV=1

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 147/323 (45%), Gaps = 55/323 (17%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F   
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231

Query: 683 ATQMR--FQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 730
           A  +R       GR L +A  +  S I D  T   +++L+GH++ V    +         
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291

Query: 731 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773
                            + G Y A+ S D+ +++W   S   G+C+  L    N   + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348

Query: 774 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 820
           FHP+   LL     +T+++W++   + T T+ AH   V+S+              VNG  
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408

Query: 821 ---------MVASASHDKCVKIW 834
                    ++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) (taxid: 214684)

>sp|P0CS43|LIS1_CRYNB Nuclear distribution protein PAC1 OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=PAC1 PE=3 SV=1

 Score =  112 bits (281), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/323 (27%), Positives = 147/323 (45%), Gaps = 55/323 (17%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   LLA+   D    LW  E+  ++ TL+ HT+ + DV F P    +AT S+D T++
Sbjct: 113 FHPTWTLLASASEDATVKLWDWEAGDMERTLKGHTKAVMDVDFDPRGGLMATCSSDLTLK 172

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682
           +WDT N   +++T  GH  +V S+ F P  E L+ S   +  IR W +++G C   F   
Sbjct: 173 LWDTANQYTNVKTLHGHDHSVSSVRFMPDGETLV-SASRDKTIRVWQVSSGYCIKTFSGH 231

Query: 683 ATQMR--FQPRLGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCW--------- 730
           A  +R       GR L +A  +  S I D  T   +++L+GH++ V    +         
Sbjct: 232 AEWVREAVPSEDGRWLVSASNDQTSRIWDFSTGETKMELRGHEHVVECAVFAPVNAYPAI 291

Query: 731 ----------------NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773
                            + G Y A+ S D+ +++W   S   G+C+  L    N   + V
Sbjct: 292 RELAGLKPPAPRDTRAKSPGVYAATGSRDKTIKLWDALS---GQCLRTLVGHDNWIRALV 348

Query: 774 FHPTFPSLLVIGCYETLELWNMTENK-TLTLSAHDKLVSSL----------AASTVNG-- 820
           FHP+   LL     +T+++W++   + T T+ AH   V+S+              VNG  
Sbjct: 349 FHPSGKYLLSASDDKTIKVWDLANGRCTKTIEAHSHFVTSMTWGRAVGASGGIEKVNGDA 408

Query: 821 ---------MVASASHDKCVKIW 834
                    ++A+ S D+ +K+W
Sbjct: 409 SSKEPRRINVLATGSVDQTIKVW 431

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. Plays a central role in positioning the mitotic spindle at the bud neck during cell division. Targets cytoplasmic dynein to microtubule plus ends, thereby promoting dynein-mediated microtubule sliding along the bud cortex and consequently the movement of the mitotic spindle to the bud neck.

Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) (taxid: 283643)

>sp|C4Q0P6|LIS1_SCHMA Lissencephaly-1 homolog OS=Schistosoma mansoni GN=Smp_129340 PE=3 SV=1

 Score =  110 bits (274), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 82/290 (28%), Positives = 132/290 (45%), Gaps = 23/290 (7%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   +  +   D    +W  E+   + TL+ HT  + DV F PS   LA+ SAD  V+
Sbjct: 130 FHPHYNVFVSASEDASIKVWDYETGEFEHTLKGHTDSVQDVAFDPSGKFLASCSADMQVK 189

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682
           +WD       ++T TGH   V S+ F PS  D L S   +  I+ W ++ G C   F   
Sbjct: 190 LWDFTIYQ-CIKTLTGHDHNVSSVAFLPSG-DFLVSASRDKTIKMWEVSTGYCTKTFIGH 247

Query: 683 ATQMR-FQPR-LGRILAAAIENY-ISILDVETQVCRLKLQGHKNQVHSVCW--------- 730
              +R  +P   G +LA+   ++ I I  VE++ C++ L+GH++ V  + W         
Sbjct: 248 TEWIRSVRPSPEGNLLASCSNDHTIRIWSVESRECQVVLRGHEHVVECIAWASHPQNLNS 307

Query: 731 -----NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785
                N+S   ++   D  +R W +  G    C+  L    N     VFHP    LL   
Sbjct: 308 LPSSMNSSLLLVSGSRDRTIRFWDVNIGI---CLFVLIGHDNWVRQLVFHPHGRLLLSAS 364

Query: 786 CYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
             +T+ +W++   +   TL+AH   V+SL  + +     + S D+ + IW
Sbjct: 365 DDKTIRVWDLKNRRCHKTLNAHSHFVTSLDVNRLAPYAITGSVDQTIHIW 414

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Schistosoma mansoni (taxid: 6183)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score =  104 bits (260), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/280 (30%), Positives = 127/280 (45%), Gaps = 11/280 (3%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           +  FSP G LLA G  DK   +W   S     TLE HT W+  V FSP  + LA+ S D 
Sbjct: 464 AVAFSPGGSLLAGGSGDKLIHVWDVASGDELHTLEGHTDWVRAVAFSPDGALLASGSDDA 523

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
           TVR+WD    +     F GH+  V+ + F P    ++ S   +   R W++  G+   V 
Sbjct: 524 TVRLWDVAAAE-ERAVFEGHTHYVLDIAFSPDGS-MVASGSRDGTARLWNVATGTEHAVL 581

Query: 680 KSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 736
           K        + F P    + + + +  I + DV T   R  LQ     V S+ ++  G  
Sbjct: 582 KGHTDYVYAVAFSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSM 641

Query: 737 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM 795
           L   SD  V +W + S   GE +H      +   +  F P   +LL  G  + T+ LW++
Sbjct: 642 LVHGSDSTVHLWDVAS---GEALHTFEGHTDWVRAVAFSPDG-ALLASGSDDRTIRLWDV 697

Query: 796 -TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
             + +  TL  H + V S+A       +ASAS D  ++IW
Sbjct: 698 AAQEEHTTLEGHTEPVHSVAFHPEGTTLASASEDGTIRIW 737

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O22212|PRP4L_ARATH U4/U6 small nuclear ribonucleoprotein PRP4-like protein OS=Arabidopsis thaliana GN=EMB2776 PE=2 SV=1

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 135/282 (47%), Gaps = 15/282 (5%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           C FS DGK+LAT        LW     T   + L++H +  TDV FSP    LAT+SADR
Sbjct: 261 CSFSRDGKILATCSLSGVTKLWEMPQVTNTIAVLKDHKERATDVVFSPVDDCLATASADR 320

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
           T ++W T+     L+TF GH   +  + FHPS +  L +   +   R W IN G+   + 
Sbjct: 321 TAKLWKTDGT--LLQTFEGHLDRLARVAFHPSGK-YLGTTSYDKTWRLWDINTGA-ELLL 376

Query: 680 KSGATQ----MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE 735
           + G ++    + FQ       +  +++   + D+ T    L  QGH   V SV ++ +G 
Sbjct: 377 QEGHSRSVYGIAFQQDGALAASCGLDSLARVWDLRTGRSILVFQGHIKPVFSVNFSPNGY 436

Query: 736 YLAS-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELW 793
           +LAS   D   R+W +      + ++ +    N      + P     L    Y+  + +W
Sbjct: 437 HLASGGEDNQCRIWDL---RMRKSLYIIPAHANLVSQVKYEPQEGYFLATASYDMKVNIW 493

Query: 794 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
           +  +   + +L+ H+  V+SL  +  +  +A+ SHD+ +K+W
Sbjct: 494 SGRDFSLVKSLAGHESKVASLDITADSSCIATVSHDRTIKLW 535

Arabidopsis thaliana (taxid: 3702)

>sp|A7S338|LIS1_NEMVE Lissencephaly-1 homolog OS=Nematostella vectensis GN=v1g242515 PE=3 SV=1

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 81/301 (26%), Positives = 134/301 (44%), Gaps = 35/301 (11%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   ++ T   D    +W  E+   + TL+ HT  + D+ F  +   LA+SSAD T++
Sbjct: 114 FHPVYSVMVTSSEDATVKVWDYETGDFERTLKGHTDAVQDLAFDHTGKFLASSSADMTIK 173

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS- 681
           +WD +  +  +RT  GH   V S+ F PS  D L S   +  I+ W I  G C   F+  
Sbjct: 174 LWDFQGFE-CIRTLHGHDHNVSSISFLPSG-DHLVSASRDKTIKMWEIATGYCVKTFQGH 231

Query: 682 GATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWN-------- 731
           G    R +P     L A+  N   I +  V ++ C+  L+ H + +  + W         
Sbjct: 232 GEWVRRVRPNADGSLIASCSNDQTIRVWVVASRECKCDLRDHDHVIEDLNWAPESATPVI 291

Query: 732 -------------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777
                        + G +L S S D+ +++W +   S G C+  L    N   + +FHP 
Sbjct: 292 NEAAGVEGGKKAMSPGPFLVSASRDKSIKIWDV---SAGVCLVTLVGHDNWVRAVMFHPG 348

Query: 778 FPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
                ++ C +  TL +W+    +   TL AH+  V++L        VA+ S D  +K+W
Sbjct: 349 --GKFIVSCSDDKTLRIWDYKNKRCAKTLVAHEHFVTTLDFHKSAPFVATGSVDLTLKVW 406

Query: 835 K 835
           +
Sbjct: 407 E 407

Positively regulates the activity of the minus-end directed microtubule motor protein dynein. May enhance dynein-mediated microtubule sliding by targeting dynein to the microtubule plus end. Required for several dynein- and microtubule-dependent processes.

Nematostella vectensis (taxid: 45351)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	835
280967728	905	LisH-SSDP-WD40 [Malus x domestica]	0.983	0.907	0.706	0.0
297738887	871	unnamed protein product [Vitis vinifera]	0.994	0.952	0.697	0.0
225445366	878	PREDICTED: transcriptional corepressor L	0.994	0.945	0.691	0.0
359484630	883	PREDICTED: transcriptional corepressor L	0.990	0.936	0.685	0.0
356515484	892	PREDICTED: transcriptional corepressor L	0.996	0.932	0.649	0.0
449441952	891	PREDICTED: transcriptional corepressor L	0.992	0.930	0.637	0.0
357466351	941	NAD(P)H-quinone oxidoreductase subunit [	0.991	0.879	0.604	0.0
449441950	900	PREDICTED: transcriptional corepressor L	0.992	0.921	0.631	0.0
449522548	900	PREDICTED: transcriptional corepressor L	0.992	0.921	0.631	0.0
225430178	910	PREDICTED: transcriptional corepressor L	0.995	0.913	0.633	0.0

>gi|280967728|gb|ACZ98534.1| LisH-SSDP-WD40 [Malus x domestica]

 Score = 1114 bits (2881), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 608/860 (70%), Positives = 696/860 (80%), Gaps = 39/860 (4%)

Query: 9   DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 68
           D  LDVYIYDYL+KRKLHASAKAFQ EGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN
Sbjct: 4   DHRLDVYIYDYLMKRKLHASAKAFQDEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTN 63

Query: 69  EKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRR-- 126
           EKHSE+AASYIE+QVIKAREQQQQQ+ Q Q   Q QQ+ +Q+   Q+  Q+QQQQQ++  
Sbjct: 64  EKHSEAAASYIETQVIKAREQQQQQKPQLQDQMQMQQLLLQRHAQQQQQQRQQQQQQQQP 123

Query: 127 -----------DSTQHLNDTGDD--LR--PGFAKAFTTKMYEDRLKKLPFQRDSLDDATI 171
                      D TQ  N T +D  LR  P  A +  TKMYE+RLK LP QRD++DDA I
Sbjct: 124 QQQQQQQQQRRDGTQLHNGTANDSLLRQNPATANSMATKMYEERLK-LPPQRDAMDDAAI 182

Query: 172 KPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHGVS----QQVQSRSQQPPLSTQ 227
           K RL DNM+QLLDPNH +++KAA  G QP GQ LHGT G      QQ  SRSQQ P S+Q
Sbjct: 183 KQRLGDNMSQLLDPNHVSMMKAATAGGQPPGQMLHGTPGGVLGNLQQPHSRSQQLPGSSQ 242

Query: 228 EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLTQ 287
           ++K+E+   MNPRA   EGSLIG HGSNQG  N+TLKGWPLTG D+ RSG+LQQQ SL Q
Sbjct: 243 DIKSEV---MNPRAVAPEGSLIGTHGSNQGNNNLTLKGWPLTGFDRLRSGILQQQNSLMQ 299

Query: 288 ---PYNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
              PYNQL  QQ ++ AQQNLASPS+NDL++R+++ML N+RNM L +DG  +SV   V  
Sbjct: 300 SPQPYNQLLQQQQLMLAQQNLASPSSNDLDNRRMKMLLNNRNMVLGKDGQLSSVD--VPN 357

Query: 345 VGSAMQIISPGLPRGDNDLLIK---------IQQQQQQLQHYSHHPLSSQQSQNSNPLLQ 395
           VGS  Q+  P LPRGD D+L+K         +Q   QQ Q YS HPLS Q SQNS+  LQ
Sbjct: 358 VGSPAQVGCPVLPRGDADMLMKPTYQLQQQQMQSNNQQQQPYSQHPLSGQHSQNSSQHLQ 417

Query: 396 QQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPS 455
           Q +KI+  GSM  DGSM NT QGNDQASKNQ+GRKRKQ VSSSGPANSSGT NT GP+PS
Sbjct: 418 QHEKIMGSGSMAPDGSMPNTLQGNDQASKNQLGRKRKQPVSSSGPANSSGTVNTTGPSPS 477

Query: 456 SPSSPSTHTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLD 515
           SPS+PSTHT GDV+S PTL HNG SSKSLLMFGSDG+GS  SAPN+LTD+DRFVDDGSL+
Sbjct: 478 SPSTPSTHTAGDVMSMPTLPHNGGSSKSLLMFGSDGLGSRASAPNKLTDVDRFVDDGSLE 537

Query: 516 DNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH 575
           DNVESFLS DDADPR RV R ++V KGF+F E QLIPAST+KVE CH S DGK LATGGH
Sbjct: 538 DNVESFLSHDDADPRGRVVRCSDVSKGFSFKEVQLIPASTNKVECCHLSSDGKSLATGGH 597

Query: 576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT 635
           D+KAVLWCTE+++VKSTL+EH+QWITDVRFSPS+SRLATSSAD+TVRVWD +NP YSLRT
Sbjct: 598 DRKAVLWCTETYSVKSTLDEHSQWITDVRFSPSMSRLATSSADKTVRVWDADNPGYSLRT 657

Query: 636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRI 695
           FTGHS+TVMS+DFHPSKED LCSCDNNSEIRYWSI NGSCAGVFK GA+Q+RFQP  GR 
Sbjct: 658 FTGHSSTVMSVDFHPSKEDFLCSCDNNSEIRYWSIKNGSCAGVFKGGASQVRFQPCFGRN 717

Query: 696 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK 755
           LAAA +N++SILDVETQVCRLKLQGHK+ VHSVCW+ SG+YLASVSD+LVRVW+IGS  K
Sbjct: 718 LAAAADNFVSILDVETQVCRLKLQGHKSAVHSVCWDPSGDYLASVSDDLVRVWTIGSSCK 777

Query: 756 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA 815
           GE IHELSC+GNKF++CVFHPT+P+LLVIGCYETLELWNMTENKT+TL AHDKLVSSLA 
Sbjct: 778 GEFIHELSCSGNKFNTCVFHPTYPALLVIGCYETLELWNMTENKTMTLHAHDKLVSSLAV 837

Query: 816 STVNGMVASASHDKCVKIWK 835
           S+  G+VASASHDKCVK+WK
Sbjct: 838 SSATGLVASASHDKCVKLWK 857

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738887|emb|CBI28132.3| unnamed protein product [Vitis vinifera]

 Score = 1093 bits (2828), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/876 (69%), Positives = 688/876 (78%), Gaps = 46/876 (5%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ  +S+ ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQLQVSS-DIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 297

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 298 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 356

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH-----HPL 382
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK+QQQQ Q  +        HPL
Sbjct: 357 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKLQQQQLQNSNQQQQQYLQHPL 416

Query: 383 SSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAVSSSGPA 441
           SSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ VSSSGPA
Sbjct: 417 SSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPVSSSGPA 476

Query: 442 NSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLTSAPN 500
           NSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+ TSAPN
Sbjct: 477 NSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGTHTSAPN 536

Query: 501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           QL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I ASTSKVE 
Sbjct: 537 QLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITASTSKVEC 596

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
           CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLATSSAD+T
Sbjct: 597 CHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLATSSADKT 656

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           VRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NGSC  VFK
Sbjct: 657 VRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNGSCTRVFK 716

Query: 681 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV 740
            G   MRFQPR GR LAAA E  +SILDVETQ CR KLQGHKN V SVCW++SG YLA+V
Sbjct: 717 GGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHV-SVCWDSSGSYLATV 775

Query: 741 SDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK 799
           S++LV+VW++GSG K  ECIHEL  +GNKF+SC FHPT+ SLLVIGCY++LELWNMTENK
Sbjct: 776 SEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSLELWNMTENK 835

Query: 800 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           T+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 836 TMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 871

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225445366|ref|XP_002284908.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Vitis vinifera]

 Score = 1089 bits (2817), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/883 (69%), Positives = 687/883 (77%), Gaps = 53/883 (6%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMK-RFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 237

Query: 213 -QQVQSRSQQPPLSTQ-EVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTG 270
            QQVQSR+QQ  +S+  ++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTG
Sbjct: 238 LQQVQSRNQQLQVSSACDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTG 297

Query: 271 LDQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRN 326
           LDQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN
Sbjct: 298 LDQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN 357

Query: 327 MGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQ 375
             L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q
Sbjct: 358 -SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQ 416

Query: 376 HYSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQA 434
            Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ 
Sbjct: 417 QYLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQP 476

Query: 435 VSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMG 493
           VSSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG
Sbjct: 477 VSSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMG 536

Query: 494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA 553
           + TSAPNQL D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F+E + I A
Sbjct: 537 THTSAPNQLADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSFSEVRCITA 596

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA 613
           STSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RFSPS+ RLA
Sbjct: 597 STSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRFSPSMPRLA 656

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           TSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EIRYWSI NG
Sbjct: 657 TSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEIRYWSIPNG 716

Query: 674 SCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733
           SC  VFK G   MRFQPR GR LAAA E  +SILDVETQ CR KLQGHKN V SVCW++S
Sbjct: 717 SCTRVFKGGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHV-SVCWDSS 775

Query: 734 GEYLASVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 792
           G YLA+VS++LV+VW++GSG K  ECIHEL  +GNKF+SC FHPT+ SLLVIGCY++LEL
Sbjct: 776 GSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVIGCYQSLEL 835

Query: 793 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           WNMTENKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 836 WNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 878

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484630|ref|XP_003633134.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera]

 Score = 1084 bits (2804), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 611/891 (68%), Positives = 685/891 (76%), Gaps = 64/891 (7%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DY LKRKLHASAKAFQ E KVST+PVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYFLKRKLHASAKAFQAEAKVSTEPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE+AASYIE+Q+IKARE QQQQQQQ Q+ QQ QQ Q  Q   Q+  QQ 
Sbjct: 61  DIFIARTNEKHSEAAASYIETQLIKARELQQQQQQQQQQQQQQQQHQKPQQQQQQQQQQM 120

Query: 121 QQQQRR----------------DSTQHLNDTGDDL---------RPGFAKAFTTKMYEDR 155
           Q QQ                  D TQ LN +G+ L          P  A    TKMYE+R
Sbjct: 121 QMQQLLLQRHVQQQQQQQQQRRDGTQILNGSGNGLVSNDALMRQNPATANTLATKMYEER 180

Query: 156 LKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGT-HGVS-- 212
           LK LP QRD LDDA +K R  DNM QLL+PNHA+LLK+AA+  QP GQTLHG   G+S  
Sbjct: 181 LK-LPLQRDPLDDAAMKQRFGDNMGQLLEPNHASLLKSAAVSGQP-GQTLHGAPGGISGN 238

Query: 213 -QQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGL 271
            QQVQSR+QQ     Q++K+EMNP MNPRAAG EGSLIGVHGSNQG  N+TLKGWPLTGL
Sbjct: 239 LQQVQSRNQQ----LQDIKSEMNPMMNPRAAGPEGSLIGVHGSNQGGNNLTLKGWPLTGL 294

Query: 272 DQFRSGLLQQQKSLTQP----YNQLQLQQLMLQAQQNLASPSANDLESRKLRMLHNSRNM 327
           DQ RSG+LQQ KSL QP    +     QQL+LQAQQNLASPSA+DLE RKLRML NSRN 
Sbjct: 295 DQLRSGILQQHKSLIQPSQPFHQLQLQQQLLLQAQQNLASPSASDLECRKLRMLLNSRN- 353

Query: 328 GLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIK-----------IQQQQQQLQH 376
            L +DG  N+VGD+V+ VGS MQ+  P LPRGD D+LIK           +Q   QQ Q 
Sbjct: 354 SLGKDGQLNTVGDVVANVGSPMQVGCPVLPRGDTDMLIKRLNVSQLQQQQLQNSNQQQQQ 413

Query: 377 YSHHPLSSQQSQNSNP-LLQQQDKILAGGSMTMDGSMSNTFQGNDQASKNQIGRKRKQAV 435
           Y  HPLSSQQSQ+SN  LL QQDK++  GS+ +DGSMSNTF+GNDQ SK QIGRKRKQ V
Sbjct: 414 YLQHPLSSQQSQSSNHHLLHQQDKMIGSGSIGLDGSMSNTFRGNDQTSKGQIGRKRKQPV 473

Query: 436 SSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGS 494
           SSSGPANSSGT NT GP+PSS  S  + HTPGDVIS PTL HNG SSKSLLM+GSDGMG+
Sbjct: 474 SSSGPANSSGTGNTAGPSPSSAPSTPSTHTPGDVISMPTLSHNGGSSKSLLMYGSDGMGT 533

Query: 495 LTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTF 545
            TSAPNQL          D+DRFVDDGSLDDNVESFL+ DD DPRD VGRS +  KGF+F
Sbjct: 534 HTSAPNQLWNNRYNNLQADVDRFVDDGSLDDNVESFLAHDDGDPRDTVGRSVDGSKGFSF 593

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF 605
           +E + I ASTSKVE CHFS DGKLLATGG DKKAVLWCTESFT KS LEEH+Q ITD+RF
Sbjct: 594 SEVRCITASTSKVECCHFSSDGKLLATGGQDKKAVLWCTESFTAKSRLEEHSQMITDIRF 653

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SPS+ RLATSSAD+TVRVWD +NP YSLRTFTGHST V SLDFHP+K+DL+CSCD N EI
Sbjct: 654 SPSMPRLATSSADKTVRVWDVDNPVYSLRTFTGHSTNVTSLDFHPNKDDLICSCDGNGEI 713

Query: 666 RYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV 725
           RYWSI NGSC  VFK G   MRFQPR GR LAAA E  +SILDVETQ CR KLQGHKN V
Sbjct: 714 RYWSIPNGSCTRVFKGGTNHMRFQPRHGRYLAAAAEGVVSILDVETQACRQKLQGHKNHV 773

Query: 726 HSVCWNTSGEYLASVSDELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVI 784
            SVCW++SG YLA+VS++LV+VW++GSG K  ECIHEL  +GNKF+SC FHPT+ SLLVI
Sbjct: 774 -SVCWDSSGSYLATVSEDLVKVWTVGSGGKAAECIHELHYSGNKFNSCAFHPTYTSLLVI 832

Query: 785 GCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           GCY++LELWNMTENKT+TL AHDKL+SSLA S V G+VASASHD CVK+WK
Sbjct: 833 GCYQSLELWNMTENKTMTLPAHDKLISSLAVSNVTGLVASASHDNCVKLWK 883

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515484|ref|XP_003526430.1| PREDICTED: transcriptional corepressor LEUNIG-like [Glycine max]

 Score = 1065 bits (2755), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 581/895 (64%), Positives = 676/895 (75%), Gaps = 63/895 (7%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQ 120
           DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQ QQ  +PQQ Q  Q    + Q   Q+ 
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQNQQQPQPQQSQHQQQHMQMQQLLLQRA 120

Query: 121 QQQQR------------------------RDSTQHLNDTGDDL--RPGFAKAFTTKMYED 154
           QQQQ+                        RD    LN + + L   PG A A  TKMYE+
Sbjct: 121 QQQQQQQQQQQQQPQSQQQQSQPQQQQQSRDRPHLLNGSANGLVGNPGTANALATKMYEE 180

Query: 155 RLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTHG-VSQ 213
           RLK LP QRDSLDDA  K R  +NM QLLDPNHA +LK+AA   QPSGQ LHG  G +S 
Sbjct: 181 RLK-LPLQRDSLDDAATKQRFGENMGQLLDPNHAPILKSAAAPGQPSGQVLHGAAGGMSP 239

Query: 214 QVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPLTGLDQ 273
           QVQ+R+QQ P ST ++K E++P +NPRA G EGSL+G+ GSN G+ N+TLKGWPLTGL+Q
Sbjct: 240 QVQARTQQLPGSTLDIKGEISPVLNPRAVGPEGSLMGMPGSNPGSNNLTLKGWPLTGLEQ 299

Query: 274 FRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLRMLHNS 324
            RSGLLQQQK   Q   P++QLQ+      QQLML AQQNLASPSA++ ESR+LRML N+
Sbjct: 300 LRSGLLQQQKPFMQAPQPFHQLQMLTPQHQQQLML-AQQNLASPSASE-ESRRLRMLLNN 357

Query: 325 RNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQQQLQHYSH----- 379
           RN+GL +DG SN VGD+VS VGS +Q   P  PRGD D+L+K++  Q Q Q         
Sbjct: 358 RNIGLNKDGLSNPVGDVVSNVGSPLQGGGPPFPRGDTDMLVKLKLAQLQQQQQQQSSTNA 417

Query: 380 -------HPLSSQQSQNSNPLLQQQDKILAGG--SMTMDGSMSNTFQGNDQASKNQIGRK 430
                  H LS+QQSQ SN  + QQDK+  GG  S+T+DGSMSN+F+GNDQ SKNQIGRK
Sbjct: 418 QQQQLQQHTLSNQQSQTSNHSMHQQDKVGGGGGGSVTVDGSMSNSFRGNDQVSKNQIGRK 477

Query: 431 RKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGS 489
           RKQ  SSSGPANSSGTANT GP+PSS  S  + HTPGDVIS P L H+G+SSK L+MF +
Sbjct: 478 RKQPGSSSGPANSSGTANTTGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFST 537

Query: 490 DGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG 540
           DG G+LTS  NQL          D+DRFV+DGSLD+NVESFLS DD DPRD VGR  +V 
Sbjct: 538 DGTGTLTSPSNQLWDDKDLELQADVDRFVEDGSLDENVESFLSHDDTDPRDTVGRCMDVS 597

Query: 541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI 600
           KGFTF++   + ASTSKV  CHFS DGKLLA+GGHDKK VLW T+S   K+TLEEH+  I
Sbjct: 598 KGFTFSDVNSVRASTSKVSCCHFSSDGKLLASGGHDKKVVLWYTDSLKQKATLEEHSSLI 657

Query: 601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD 660
           TDVRFSPS+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD
Sbjct: 658 TDVRFSPSMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCD 717

Query: 661 NNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 720
            + EIRYWSINNGSCA V K G TQMRFQPRLGR LAAA EN +SI DVETQVCR  L+G
Sbjct: 718 GDGEIRYWSINNGSCARVSKGGTTQMRFQPRLGRYLAAAAENIVSIFDVETQVCRYSLKG 777

Query: 721 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780
           H   V  VCW+ SGE LASVS++ VRVW++GSGS GEC+HELSC GNKFH  VFHPT+PS
Sbjct: 778 HTKPVVCVCWDPSGELLASVSEDSVRVWTLGSGSDGECVHELSCNGNKFHKSVFHPTYPS 837

Query: 781 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           LLVIGCY++LELWNM+ENKT+TLSAHD L++SLA STVNG+VASASHDK +K+WK
Sbjct: 838 LLVIGCYQSLELWNMSENKTMTLSAHDGLITSLAVSTVNGLVASASHDKFLKLWK 892

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441952|ref|XP_004138746.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 2 [Cucumis sativus]

 Score = 1046 bits (2706), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/897 (63%), Positives = 666/897 (74%), Gaps = 68/897 (7%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAE 538
           SSK L +MF SDG G+ TS  NQL DMDR+V+DGSLDDNV+SFLS DD DPRD VGR  +
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLADMDRYVEDGSLDDNVDSFLSHDDGDPRDPVGRCMD 594

Query: 539 VGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ 598
             KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   K++LEEH  
Sbjct: 595 GSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKPKTSLEEHAA 654

Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
            +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFHP K+D +CS
Sbjct: 655 IVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFHPKKDDFICS 714

Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
           CD + EIRYW+I NGSCA VFK G   MRFQPRLGR  +A ++N ++I DVETQ     L
Sbjct: 715 CDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRLGRYFSAVVDNIVTIFDVETQARVHSL 774

Query: 719 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778
           +GH   V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GNKFHSCVFHPT+
Sbjct: 775 RGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKFHSCVFHPTY 834

Query: 779 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
            +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S  +G+VASASHD+ +K+WK
Sbjct: 835 STLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASHDRFIKLWK 891

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466351|ref|XP_003603460.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula] gi|355492508|gb|AES73711.1| NAD(P)H-quinone oxidoreductase subunit [Medicago truncatula]

 Score = 1040 bits (2689), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 573/948 (60%), Positives = 673/948 (70%), Gaps = 120/948 (12%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQ------------------------- 95
           DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQQQ                         
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQPQQSQHAQQQQQQHMQMQQ 120

Query: 96  ----QHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDL--RPGFAKAFTT 149
               +H + QQ QQ   QQ   Q    Q QQQQ RD T  LN + + L   P  A A  T
Sbjct: 121 LLMQRHAQQQQQQQQHQQQPQSQPQQPQPQQQQNRDRTHLLNGSANGLAGNPATANAIAT 180

Query: 150 KMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLHGTH 209
           KMYE+RLK  P QRDSLDDA +K R  +NM QLLDPNHA++LK+AA G QPSGQ LHGT 
Sbjct: 181 KMYEERLKGPP-QRDSLDDAAMKQRFGENMGQLLDPNHASILKSAAAGGQPSGQVLHGTA 239

Query: 210 G-VSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLKGWPL 268
           G +S QVQ+RSQQ P ST ++K+E+NP +NPRAAG EGSL+G+ GSNQG  N+TLKGWPL
Sbjct: 240 GGMSPQVQARSQQLPGSTTDIKSEINPVLNPRAAGPEGSLLGISGSNQGNNNLTLKGWPL 299

Query: 269 TGLDQFRSGLLQQQKSLTQ---PYNQLQL------QQLMLQAQQNLASPSANDLESRKLR 319
           TGL+Q RSGLLQQQK   Q   P++QLQ+      QQLML AQQ+LASPSA++ ESR+LR
Sbjct: 300 TGLEQLRSGLLQQQKPYMQAPQPFHQLQMLTPQHQQQLML-AQQSLASPSASE-ESRRLR 357

Query: 320 MLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQ--------- 370
           ML N+RN+GL +DG SN  GD++S VGS +    P  PRGD D+L+K++           
Sbjct: 358 MLLNNRNIGLNKDGLSNPGGDMLSNVGSPLHGGGPPFPRGDTDMLMKLKLAQLQQQQQQQ 417

Query: 371 --------QQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGG-SMTMDGSMSNTFQGNDQ 421
                     Q Q    H LS+QQSQ SN  + QQDK+  GG S+TMDGSMSN+++GNDQ
Sbjct: 418 QHQQQSSINAQQQQLQQHALSNQQSQTSNHSMHQQDKVGGGGGSVTMDGSMSNSYRGNDQ 477

Query: 422 --------------------------------------------ASKNQIGRKRKQAVSS 437
                                                        SKNQ+GRKRKQ VSS
Sbjct: 478 IKVQPTEQSEEVLMFCGIPPFACFWSKDEILNDGWLHSPIFAIVVSKNQMGRKRKQPVSS 537

Query: 438 SGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGASSKSLLMFGSDGMGSLT 496
           SGPANSSGTANT GP+PSS  S  + HTPGD +S P L HN +SSK L+MF +DG G+LT
Sbjct: 538 SGPANSSGTANTAGPSPSSAPSTPSTHTPGDAVSMPALPHNSSSSKPLMMFSTDGTGTLT 597

Query: 497 SAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTE 547
           S  NQL          D+DRFVDDGSLDDNVESFLS DD DPRD VGR  +V KGFTF++
Sbjct: 598 SPSNQLWDDKDLELKADVDRFVDDGSLDDNVESFLSQDDTDPRDPVGRCMDVSKGFTFSD 657

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
              + AS+SK+  CHFS DGKLLA+GGHDKKAV+W  +S   K+ LEEH+  ITDVRFS 
Sbjct: 658 VNSVRASSSKIACCHFSSDGKLLASGGHDKKAVIWYADSLKQKAILEEHSALITDVRFSA 717

Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
           S+ RLATSS D+TVRVWD +NP YSLRTFTGHST+VMSLDFHP+K+DL+CSCD + EIRY
Sbjct: 718 SMPRLATSSFDKTVRVWDVDNPGYSLRTFTGHSTSVMSLDFHPNKDDLICSCDGDGEIRY 777

Query: 668 WSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 727
           WSINNGSC  V K G TQMRFQPRLGR LAAA EN +SILDVETQ CR  L+GH   + S
Sbjct: 778 WSINNGSCVRVSKGGTTQMRFQPRLGRYLAAAAENIVSILDVETQACRYSLKGHTKTIDS 837

Query: 728 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 787
           VCW+ SGE LASVS++ VR+W++    +GEC+HELSC G+KFHSCVFHPTFPSLLVIGCY
Sbjct: 838 VCWDPSGELLASVSEDSVRIWTL----EGECVHELSCNGSKFHSCVFHPTFPSLLVIGCY 893

Query: 788 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           ++LELWNM ENKT+TLSAHD L+++LA STVNG+VASASHDK +K+WK
Sbjct: 894 QSLELWNMAENKTMTLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 941

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441950|ref|XP_004138745.1| PREDICTED: transcriptional corepressor LEUNIG-like isoform 1 [Cucumis sativus]

 Score = 1039 bits (2686), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/906 (63%), Positives = 666/906 (73%), Gaps = 77/906 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHALSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDV 709
           P K+D +CSCD + EIRYW+I NGSCA VFK G   MRFQPRLGR  +A ++N ++I DV
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRLGRYFSAVVDNIVTIFDV 774

Query: 710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 769
           ETQ     L+GH   V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GNKF
Sbjct: 775 ETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKF 834

Query: 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 829
           HSCVFHPT+ +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S  +G+VASASHD+
Sbjct: 835 HSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASHDR 894

Query: 830 CVKIWK 835
            +K+WK
Sbjct: 895 FIKLWK 900

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449522548|ref|XP_004168288.1| PREDICTED: transcriptional corepressor LEUNIG-like [Cucumis sativus]

 Score = 1038 bits (2684), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 572/906 (63%), Positives = 666/906 (73%), Gaps = 77/906 (8%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L A+A+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQ--LLLQRHAQ 118
           DIFIARTNEKHS+ AASYIE+Q+IKAREQQQ QQQQ Q+ Q  QQ       LL+QRHAQ
Sbjct: 61  DIFIARTNEKHSDVAASYIETQLIKAREQQQHQQQQQQQTQPQQQQPQHMQMLLMQRHAQ 120

Query: 119 QQQQQQ------------------------RRDSTQHLNDTGDDL---------RPGFAK 145
           QQQQQQ                        RRD  Q LN + +            PG   
Sbjct: 121 QQQQQQQQQQHQQQQQPQQQQQQSQQQQQQRRDGAQLLNGSSNGFVGNDPLMRQNPGSVN 180

Query: 146 AFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQPSGQTL 205
           A  TKMYEDRLK LP QRDSLDD  +K R  DN+ QLLDPNHA++LK+AA  SQ SGQ L
Sbjct: 181 ALATKMYEDRLK-LPLQRDSLDDGAMKQRYGDNVGQLLDPNHASILKSAAATSQSSGQVL 239

Query: 206 HG-THGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAGNVTLK 264
           HG T G+S QVQ RSQQ P ST ++KTE+NP +NPRAAG EGSL+G+ GSN G  N+TLK
Sbjct: 240 HGSTGGMSPQVQPRSQQLPGSTPDIKTEINPVLNPRAAGPEGSLMGIPGSNHGGNNLTLK 299

Query: 265 GWPLTGLDQFRSGLLQQQKSLTQP---YNQLQL------QQLMLQAQQNLASPSANDLES 315
           GWPLTGLDQ RSG+LQQQK   Q    + QLQ+      QQLML AQQNL SPS ND + 
Sbjct: 300 GWPLTGLDQLRSGILQQQKPFIQAPQSFPQLQMLTPQHQQQLML-AQQNLTSPSVND-DG 357

Query: 316 RKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDN-DLLIKIQQ----- 369
           R+LRML N+R   +A+DG SNSVGD+V  VGS +Q  SP LPRGDN D+++KI+      
Sbjct: 358 RRLRMLLNTR---MAKDGLSNSVGDVVPNVGSPLQAGSPLLPRGDNTDMILKIKMAQLQQ 414

Query: 370 ---------QQQQLQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGSMSNTFQGND 420
                    QQQQ Q    H LS+QQSQ+SN  + QQ+KI   GS+TMDGSMSN+F+GND
Sbjct: 415 QQQQQQSSSQQQQQQQLQQHTLSNQQSQSSNHNMHQQEKIGGAGSVTMDGSMSNSFRGND 474

Query: 421 QASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVISRPTLQHNGA 479
           Q SKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGD IS P L H+G+
Sbjct: 475 QVSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDAISMPALPHSGS 534

Query: 480 SSKSL-LMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESFLSPDDADP 529
           SSK L +MF SDG G+ TS  NQL          DMDR+V+DGSLDDNV+SFLS DD DP
Sbjct: 535 SSKPLTMMFNSDGTGTFTSPSNQLWDDKELELQADMDRYVEDGSLDDNVDSFLSHDDGDP 594

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV 589
           RD VGR  +  KGFTFTE   + ASTSKV SCHFS DGKLL +GGHDKKAVLW TE+   
Sbjct: 595 RDPVGRCMDGSKGFTFTEVNSVRASTSKVSSCHFSSDGKLLVSGGHDKKAVLWYTENLKP 654

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K++LEEH   +TDVRFSPS+ RLATSS DRTVRVWD +N  YSLRTFTGHS +VMSLDFH
Sbjct: 655 KTSLEEHAAIVTDVRFSPSMPRLATSSFDRTVRVWDADNHCYSLRTFTGHSASVMSLDFH 714

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDV 709
           P K+D +CSCD + EIRYW+I NGSCA VFK G   MRFQPRLGR  +A ++N ++I DV
Sbjct: 715 PKKDDFICSCDGDGEIRYWNITNGSCAAVFKGGTGPMRFQPRLGRYFSAVVDNIVTIFDV 774

Query: 710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 769
           ETQ     L+GH   V S+CW+ SGE+LASVS++ VRVW++ SG++GE IHELSC GNKF
Sbjct: 775 ETQARVHSLRGHTKTVQSLCWDPSGEFLASVSEDSVRVWTLASGNEGESIHELSCNGNKF 834

Query: 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 829
           HSCVFHPT+ +LLVIGCYE+LELWN TENKT+TLSAH+ LVSSLA S  +G+VASASHD+
Sbjct: 835 HSCVFHPTYSTLLVIGCYESLELWNTTENKTMTLSAHEGLVSSLAVSAASGLVASASHDR 894

Query: 830 CVKIWK 835
            +K+WK
Sbjct: 895 FIKLWK 900

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225430178|ref|XP_002284900.1| PREDICTED: transcriptional corepressor LEUNIG-like [Vitis vinifera]

 Score = 1018 bits (2631), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 579/914 (63%), Positives = 672/914 (73%), Gaps = 83/914 (9%)

Query: 1   MSQNNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFW 60
           MSQ NWEADKMLDVYI+DYL+KR L ASA+AFQ EGKVS+DPVAIDAPGGFLFEWWSVFW
Sbjct: 1   MSQTNWEADKMLDVYIHDYLVKRDLKASAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFW 60

Query: 61  DIFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQ------ 114
           DIFIARTNEKHSE AASYIE+Q+IKAREQQQQQQQQ Q+PQQ Q  Q QQ   Q      
Sbjct: 61  DIFIARTNEKHSEVAASYIETQLIKAREQQQQQQQQQQQPQQPQHQQQQQQQQQLQMQQL 120

Query: 115 ---RHAQQQQQQQ----------------------RRDSTQHLNDTGDDL---------R 140
              RHAQQQQQQQ                      RRD    LN T + L          
Sbjct: 121 LLQRHAQQQQQQQQQQQQQQQQQQQQQQQQPQQQQRRDGAHLLNGTTNGLVGNDPLMRTN 180

Query: 141 PGFAKAFTTKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQP 200
           P  A A  TKMYE+RLK LP QRDSLDDAT+K R S+N+ QLLDPNHAT+LK+AA   QP
Sbjct: 181 PATANALATKMYEERLK-LPIQRDSLDDATMKQRFSENVGQLLDPNHATILKSAAAAGQP 239

Query: 201 SGQTLH-GTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHGSNQGAG 259
           SGQ LH    G+S QVQ+R+QQ P ST ++K+EMNP +NPRA G EGSLIG+ GSNQG  
Sbjct: 240 SGQVLHVSAGGMSPQVQARNQQLPGSTPDIKSEMNPVLNPRAGGPEGSLIGIPGSNQGGN 299

Query: 260 NVTLKGWPLTGLDQFRSGLLQQQKSLTQ----PYNQLQLQQLMLQAQQNL----ASPSAN 311
           N+TLKGWPLTGLDQ RSGLLQQ K   Q    P++QLQ+     Q          SP ++
Sbjct: 300 NLTLKGWPLTGLDQLRSGLLQQPKPFIQAAPQPFHQLQMLPQHQQQLLLAQQSLTSPPSD 359

Query: 312 DLESRKLRMLHNSRNMGLARDGSSNSVGDLVSTVGSAMQIISPGLPRGDNDLLIKIQQQQ 371
             ESR+LRML N+RNM L +DG SNS+GD V  VGS +Q     LPRGD ++L+K++  Q
Sbjct: 360 --ESRRLRMLLNNRNMNLGKDGPSNSIGD-VPNVGSPLQPGCAVLPRGDTEMLMKLKMAQ 416

Query: 372 QQ--------------------LQHYSHHPLSSQQSQNSNPLLQQQDKILAGGSMTMDGS 411
                                  Q    H LSSQQSQ+SN  + QQDK+   GS+T+DGS
Sbjct: 417 MHHQQQQQQQQQQNSNQPQQQQQQQLQQHALSSQQSQSSNHNMHQQDKMGGAGSITVDGS 476

Query: 412 MSNTFQGNDQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSPSSPST-HTPGDVIS 470
           MSN+F+GNDQASKNQ GRKRKQ VSSSGPANSSGTANT GP+PSS  S  + HTPGDVIS
Sbjct: 477 MSNSFRGNDQASKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVIS 536

Query: 471 RPTLQHNGASSKSLLMFGSDGMGSLTSAPNQL---------TDMDRFVDDGSLDDNVESF 521
            P L H+G+SSK L+MF +DG G+LTS  NQL          DMDRFV+DGSLDDNVESF
Sbjct: 537 MPALPHSGSSSKPLMMFSTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESF 596

Query: 522 LSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL 581
           LS DD DPRD VGR  +V KGFTFTE   + AS SKV  CHFS DGKLLA+GGHDKKAVL
Sbjct: 597 LSHDDTDPRDTVGRCMDVSKGFTFTEVSSVRASASKVICCHFSSDGKLLASGGHDKKAVL 656

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
           W T++   K+TLEEH+  ITDVRFSPS+ RLATSS D+TVRVWD ++  YSLRTFTGHS 
Sbjct: 657 WYTDTLKTKTTLEEHSMLITDVRFSPSMPRLATSSFDKTVRVWDADSTSYSLRTFTGHSA 716

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIE 701
           +VMSLDFHP+++DL+CSCD + EIRYW+I NGSCA VFK G  QMRFQPR GR LAAA E
Sbjct: 717 SVMSLDFHPNQDDLICSCDGDGEIRYWNIKNGSCARVFKGGTAQMRFQPRHGRYLAAAAE 776

Query: 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 761
           N +SILDVETQ CR  LQGH   +HSVCW+ SGE+LASVS++ VRVW++GSG++GEC+HE
Sbjct: 777 NVVSILDVETQACRHSLQGHTKPIHSVCWDPSGEFLASVSEDSVRVWTLGSGNEGECVHE 836

Query: 762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM 821
           LSC GNKFHSCVFHPT+ SLLVIGCY++LELWNM+ENKT+TLSAHD L+++LA STV+G+
Sbjct: 837 LSCNGNKFHSCVFHPTYSSLLVIGCYQSLELWNMSENKTMTLSAHDGLIAALAVSTVSGL 896

Query: 822 VASASHDKCVKIWK 835
           VASASHDK VK+WK
Sbjct: 897 VASASHDKIVKLWK 910

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	835
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.350	0.877	0.274	2.3e-25
DICTYBASE|DDB_G0287273	335	wdr5 "WD40 repeat-containing p	0.325	0.811	0.271	4.9e-25
ASPGD|ASPL0000006214	434	AN6385 [Emericella nidulans (t	0.319	0.615	0.323	6.4e-25
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.337	0.206	0.289	7.1e-25
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.328	0.889	0.278	4.6e-24
UNIPROTKB|Q2KIG2	334	WDR5 "WD repeat-containing pro	0.328	0.820	0.278	4.6e-24
UNIPROTKB|P61964	334	WDR5 "WD repeat-containing pro	0.328	0.820	0.278	4.6e-24
UNIPROTKB|F1S034	334	WDR5 "Uncharacterized protein"	0.328	0.820	0.278	4.6e-24
MGI|MGI:2155884	334	Wdr5 "WD repeat domain 5" [Mus	0.328	0.820	0.278	4.6e-24
RGD|1305159	334	Wdr5 "WD repeat domain 5" [Rat	0.328	0.820	0.278	4.6e-24

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 297 (109.6 bits), Expect = 2.3e-25, P = 2.3e-25
 Identities = 86/313 (27%), Positives = 150/313 (47%)

Query:   535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
             + A V   +T  +F L    T  V S  FSP+G+ LA+   DK   +W       + T+ 
Sbjct:    27 KPAPVKPNYTL-KFTLA-GHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 84

Query:   595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED 654
              H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P + +
Sbjct:    85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSN 142

Query:   655 LLCSCDNNSEIRYWSINNGSCAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVET 711
             L+ S   +  +R W +  G C     + +   + + F      I++++ +    I D  +
Sbjct:   143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTAS 202

Query:   712 QVCRLKLQGHKNQ-VHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKF 769
               C   L    N  V  V ++ +G+Y LA+  D  +++W     SKG+C+   +C  N+ 
Sbjct:   203 GQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTCHKNEK 259

Query:   770 HSCVF---HPTFPSLLVIGCYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVAS 824
             + C+F     T    +V G  + L  +WN+ T+     L  H  +V S A      ++AS
Sbjct:   260 Y-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEVVQKLQGHTDVVISTACHPTENIIAS 318

Query:   825 AS--HDKCVKIWK 835
             A+  +DK +K+WK
Sbjct:   319 AALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

DICTYBASE|DDB_G0287273 wdr5 "WD40 repeat-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 294 (108.6 bits), Expect = 4.9e-25, P = 4.9e-25
 Identities = 79/291 (27%), Positives = 143/291 (49%)

Query:   558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
             + S  FSPDGK LA+   DK   +W       + TLE H + I+D+ +S     + ++S 
Sbjct:    49 ISSVKFSPDGKWLASASADKTIKIWGAYDGKFERTLEGHKEGISDIAWSQDSKLICSASD 108

Query:   618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG 677
             D+T+++WD E+    ++T  GH   V  + F+P + +L+ S   +  +R W +N G C  
Sbjct:   109 DKTIKIWDVESGKM-VKTLKGHKEYVFGVSFNP-QSNLIVSGSFDENVRIWDVNTGECTK 166

Query:   678 VFKSGA---TQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTS 733
             +  + +   T + F      +++ + +  + I D  T Q+          +V  V ++ +
Sbjct:   167 MISAHSDPVTGVHFNRDGTLVVSGSYDGTVRIWDTTTGQLLNTISTEDGKEVSFVKFSPN 226

Query:   734 GEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHP---TFPSLLVIGCYE 788
             G++ LA   D  +R+WS  +  K  C+   + TG+K    C+F     T    +V G  +
Sbjct:   227 GKFVLAGTLDNTLRLWSYNNNKK--CLK--TYTGHKNEKYCIFSTFSVTCGKWIVTGSED 282

Query:   789 TL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
              L  ++N+ T     TL+ H+ +V ++A      ++AS +   D+ VKIWK
Sbjct:   283 NLIYIYNLQTREIVQTLAGHEDVVLTVACHPTENIIASGALEKDRSVKIWK 333

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0042393 "histone binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0005634 "nucleus" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000006214 AN6385 [Emericella nidulans (taxid:162425)]

 Score = 305 (112.4 bits), Expect = 6.4e-25, P = 6.4e-25
 Identities = 96/297 (32%), Positives = 145/297 (48%)

Query:   547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
             E Q +   +  +E+  FSPDG+LLA+G +D    LW   S  +K TLE H+  +  V FS
Sbjct:    33 ELQTLEGHSDWIETVTFSPDGRLLASGSNDTTIKLWDPASGGLKQTLEGHSSSVQSVAFS 92

Query:   607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
             P+   LA+ S+D T+++W++ + D    T  GHS  V S+ F P           N ++ 
Sbjct:    93 PNGQLLASGSSDTTIKLWNSAS-DSLKHTMEGHSDRVESVAFSP-----------NGQL- 139

Query:   667 YWSINNGSCAGVFKSGAT---QMRFQPRLGRILAA-AIENYISILDVETQVCRLK--LQG 720
              W+   GS     +  +     + F P  G++LA+ + E  I + D  T  C LK  L G
Sbjct:   140 -WNPAIGSLKHTIEGHSDWVLSVAFSPD-GQLLASGSAEKTIKLWDSAT--CGLKHTLGG 195

Query:   721 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779
             H N V  + ++  G  LAS S D  +++W   SGS     H L    NK  S  F P   
Sbjct:   196 HSNWVLPLVFSPDGRLLASGSNDATIKLWDPPSGSLK---HTLEGHSNKIESLAFSPN-G 251

Query:   780 SLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
              LL  G  + T++LW+  T +   TL  H  +V S+  S  + ++ S S D  +K+W
Sbjct:   252 QLLASGSSDATIKLWDTATGSFRHTLKGHSDMVLSVVFSPDSQLLESGSGDNTIKLW 308

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 320 (117.7 bits), Expect = 7.1e-25, P = 7.1e-25
 Identities = 85/294 (28%), Positives = 142/294 (48%)

Query:   547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
             E Q +      VES  FSPDGK L +G +D    +W   +  +  TL+ H+  +  + FS
Sbjct:   742 EQQTLENHLGPVESVVFSPDGKQLVSGSYDDTVKIWDPATGELLQTLDGHSGTVESLAFS 801

Query:   607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR 666
             P    LA+ S D T+ +WD+   +  L+TF GH  ++ S+ F P  ++L  S  ++S I+
Sbjct:   802 PDGKLLASGSYDNTIDLWDSATGEL-LQTFEGHPHSIWSVAFAPDGKEL-ASASDDSTIK 859

Query:   667 YWSINNGSCAGVFKSGATQMR---FQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK 722
              W +  G       S +  +R   F P  G++LA++ +++ I + +  T   +  L+G  
Sbjct:   860 IWDLATGELQQTLDSHSQSVRSVAFSPD-GKLLASSSLDSTIKVWNPATGELQQSLEGRS 918

Query:   723 NQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL 781
               V SV ++  G+ LAS S++  V++W+  +G   E +  L        S  F P    L
Sbjct:   919 GWVKSVAFSPDGKKLASGSEKNTVKLWNPATG---ELLQTLEGHSQSVRSVAFSPDGKQL 975

Query:   782 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
                    T++LWN T  +   T   HD  + ++A S     + S S D  +K+W
Sbjct:   976 ASSSSDTTIKLWNSTTGELQQTFKGHDLWIRAVAFSPDGKHLVSGSDDNTIKLW 1029

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 285 (105.4 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 82/294 (27%), Positives = 142/294 (48%)

Query:   555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    19 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78

Query:   615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:    79 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136

Query:   675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 730
             C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196

Query:   731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 785
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   197 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 251

Query:   786 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   252 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

UNIPROTKB|Q2KIG2 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 285 (105.4 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 82/294 (27%), Positives = 142/294 (48%)

Query:   555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 730
             C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 785
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   786 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|P61964 WDR5 "WD repeat-containing protein 5" [Homo sapiens (taxid:9606)]

 Score = 285 (105.4 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 82/294 (27%), Positives = 142/294 (48%)

Query:   555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 730
             C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 785
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   786 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0035097 "histone methyltransferase complex" evidence=IDA

GO:0051568 "histone H3-K4 methylation" evidence=IDA

GO:0071339 "MLL1 complex" evidence=IDA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IDA

GO:0043984 "histone H4-K16 acetylation" evidence=IDA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IDA

GO:0000123 "histone acetyltransferase complex" evidence=IDA

GO:0043981 "histone H4-K5 acetylation" evidence=IDA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IDA

GO:0043982 "histone H4-K8 acetylation" evidence=IDA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0043966 "histone H3 acetylation" evidence=IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IDA

UNIPROTKB|F1S034 WDR5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 285 (105.4 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 82/294 (27%), Positives = 142/294 (48%)

Query:   555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 730
             C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 785
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   786 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

MGI|MGI:2155884 Wdr5 "WD repeat domain 5" [Mus musculus (taxid:10090)]

 Score = 285 (105.4 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 82/294 (27%), Positives = 142/294 (48%)

Query:   555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 730
             C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 785
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   786 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISO

GO:0001501 "skeletal system development" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005622 "intracellular" evidence=IDA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=ISO;IDA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035097 "histone methyltransferase complex" evidence=ISO

GO:0043966 "histone H3 acetylation" evidence=ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO

GO:0043982 "histone H4-K8 acetylation" evidence=ISO

GO:0043984 "histone H4-K16 acetylation" evidence=ISO

GO:0048188 "Set1C/COMPASS complex" evidence=ISO

GO:0051568 "histone H3-K4 methylation" evidence=ISO

GO:0071339 "MLL1 complex" evidence=ISO

RGD|1305159 Wdr5 "WD repeat domain 5" [Rattus norvegicus (taxid:10116)]

 Score = 285 (105.4 bits), Expect = 4.6e-24, P = 4.6e-24
 Identities = 82/294 (27%), Positives = 142/294 (48%)

Query:   555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
             T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct:    45 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104

Query:   615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
             +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct:   105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162

Query:   675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCW 730
             C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct:   163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222

Query:   731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS-CVF---HPTFPSLLVIG 785
             + +G+Y LA+  D  +++W     SKG+C+   + TG+K    C+F     T    +V G
Sbjct:   223 SPNGKYILAATLDNTLKLWDY---SKGKCLK--TYTGHKNEKYCIFANFSVTGGKWIVSG 277

Query:   786 CYETLE-LWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
               + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct:   278 SEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

GO:0000123 "histone acetyltransferase complex" evidence=ISO;ISS

GO:0001501 "skeletal system development" evidence=IEA;ISO

GO:0005622 "intracellular" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA;ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0035097 "histone methyltransferase complex" evidence=ISO;ISS

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA;ISO

GO:0043966 "histone H3 acetylation" evidence=IEA;ISO

GO:0043981 "histone H4-K5 acetylation" evidence=ISO;ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISO;ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISO;ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISO;ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISO;ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISO;ISS

GO:0048188 "Set1C/COMPASS complex" evidence=ISO;ISS

GO:0051568 "histone H3-K4 methylation" evidence=ISO;ISS

GO:0071339 "MLL1 complex" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FUY2	LEUNG_ARATH	No assigned EC number	0.5845	0.8467	0.7593	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016815001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (897 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	835
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-61
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-39
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-30
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-25
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	8e-22
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-15
smart00320	40	smart00320, WD40, WD40 repeats	1e-09
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	5e-08
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	2e-06
smart00320	40	smart00320, WD40, WD40 repeats	1e-05
pfam08513	27	pfam08513, LisH, LisH	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-05
PLN00181	793	PLN00181, PLN00181, protein SPA1-RELATED; Provisio	3e-05
smart00320	40	smart00320, WD40, WD40 repeats	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	2e-04
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	4e-04
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	4e-04
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.001
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	0.001
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.002
pfam07321	152	pfam07321, YscO, Type III secretion protein YscO	0.002
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.002
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.002
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.002
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.003
pfam13779	820	pfam13779, DUF4175, Domain of unknown function (DU	0.003
smart00320	40	smart00320, WD40, WD40 repeats	0.004
PTZ00420	568	PTZ00420, PTZ00420, coronin; Provisional	0.004

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  207 bits (529), Expect = 6e-61
 Identities = 93/292 (31%), Positives = 146/292 (50%), Gaps = 14/292 (4%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS 610
           +   T  V    FSPDGKLLATG  D    +W  E+  +  TL+ HT  + DV  S   +
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGT 64

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            LA+ S+D+T+R+WD E  +  +RT TGH++ V S+ F P    +L S   +  I+ W +
Sbjct: 65  YLASGSSDKTIRLWDLETGE-CVRTLTGHTSYVSSVAFSPDGR-ILSSSSRDKTIKVWDV 122

Query: 671 NNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS 727
             G C    +        + F P    + +++ +  I + D+ T  C   L GH  +V+S
Sbjct: 123 ETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNS 182

Query: 728 VCWNTSGE-YLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 786
           V ++  GE  L+S SD  +++W +   S G+C+  L    N  +S  F P     L+   
Sbjct: 183 VAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPD--GYLLASG 237

Query: 787 YE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
            E  T+ +W++   + + TLS H   V+SLA S     +AS S D  ++IW 
Sbjct: 238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  147 bits (373), Expect = 2e-39
 Identities = 83/253 (32%), Positives = 129/253 (50%), Gaps = 16/253 (6%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           + TL+ HT  +T V FSP    LAT S D T++VWD E  +  LRT  GH+  V  +   
Sbjct: 2   RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGEL-LRTLKGHTGPVRDVAAS 60

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAIENY-IS 705
                L     + + IR W +  G C        S  + + F P  GRIL+++  +  I 
Sbjct: 61  ADGTYLASGSSDKT-IRLWDLETGECVRTLTGHTSYVSSVAFSP-DGRILSSSSRDKTIK 118

Query: 706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC 764
           + DVET  C   L+GH + V+SV ++  G ++AS S D  +++W + +G    C+  L  
Sbjct: 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK---CVATL-- 173

Query: 765 TGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGM 821
           TG+    +S  F P    LL      T++LW+++  K L TL  H+  V+S+A S    +
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYL 233

Query: 822 VASASHDKCVKIW 834
           +AS S D  +++W
Sbjct: 234 LASGSEDGTIRVW 246

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  125 bits (313), Expect = 2e-30
 Identities = 90/354 (25%), Positives = 141/354 (39%), Gaps = 24/354 (6%)

Query: 497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS 556
           S   + +++   ++  SL     S               S                    
Sbjct: 13  SKLLKKSELGPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGH------ED 66

Query: 557 KVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTLEEHTQWITDVRF-SPSLSRLA 613
            + S  FSPDG+LL +G  D    LW        +KS    H   ++ +   SP  + + 
Sbjct: 67  SITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSIL 126

Query: 614 T--SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
              SS D TV++WD   P   +RT  GHS +V SL F P  + L      +  I+ W + 
Sbjct: 127 LASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLR 186

Query: 672 NGSCAGVFK---SGATQMRFQPRLGRILAAAIE-NYISILDVET-QVCRLKLQGHKNQVH 726
            G             + + F P  G ++A+      I + D+ T ++ R  L GH + V 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 727 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785
           S  ++  G  LAS S D  +R+W + S S    +  LS   +   S  F P    L    
Sbjct: 247 S-SFSPDGSLLASGSSDGTIRLWDLRSSSS--LLRTLSGHSSSVLSVAFSPDGKLLASGS 303

Query: 786 CYETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK 835
              T+ LW++   K   +LTL  H+  VSSL+ S    ++ S  S D  +++W 
Sbjct: 304 SDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWD 357

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  108 bits (271), Expect = 6e-26
 Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 11/209 (5%)

Query: 632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRF 688
             RT  GH+  V  + F P    LL +   +  I+ W +  G      K        +  
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDG-KLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59

Query: 689 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 747
                 + + + +  I + D+ET  C   L GH + V SV ++  G  L+S S D+ ++V
Sbjct: 60  SADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKV 119

Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSA 805
           W +     G+C+  L    +  +S  F P   + +     + T++LW++   K + TL+ 
Sbjct: 120 WDV---ETGKCLTTLRGHTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLRTGKCVATLTG 175

Query: 806 HDKLVSSLAASTVNGMVASASHDKCVKIW 834
           H   V+S+A S     + S+S D  +K+W
Sbjct: 176 HTGEVNSVAFSPDGEKLLSSSSDGTIKLW 204

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score =  108 bits (270), Expect = 8e-25
 Identities = 62/193 (32%), Positives = 91/193 (47%), Gaps = 5/193 (2%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTV 621
           FSPDG LLA+G  D    LW   S +    TL  H+  +  V FSP    LA+ S+D TV
Sbjct: 249 FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTV 308

Query: 622 RVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           R+WD E     S  T  GH   V SL F P    L+    ++  IR W +  G      +
Sbjct: 309 RLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE 368

Query: 681 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738
             S    + F P    + + + +  + + D+ T      L GH ++V S+ ++  G+ LA
Sbjct: 369 GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLA 428

Query: 739 SVS-DELVRVWSI 750
           S S D  +R+W +
Sbjct: 429 SGSSDNTIRLWDL 441

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 99.4 bits (246), Expect = 8e-22
 Identities = 78/297 (26%), Positives = 123/297 (41%), Gaps = 48/297 (16%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLW-CTESFTVKSTLEEHTQWIT 601
           T      +   T  V S  FSPDG  L+A+G  D    LW  +    ++STL  H+  + 
Sbjct: 187 TGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVV 246

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
              FSP  S LA+ S+D T+R+WD  +    LRT +GHS++V+S+ F P    LL S  +
Sbjct: 247 SS-FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPD-GKLLASGSS 304

Query: 662 NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 721
           +  +R W +  G                                       +  L L+GH
Sbjct: 305 DGTVRLWDLETGKL-------------------------------------LSSLTLKGH 327

Query: 722 KNQVHSVCWNTSGEYLAS--VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779
           +  V S+ ++  G  L S    D  +R+W + +G   + +       +   S  F P   
Sbjct: 328 EGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----GHSNVLSVSFSPDGR 383

Query: 780 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
            +       T+ LW+++    L  L  H   V+SL  S     +AS S D  +++W 
Sbjct: 384 VVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 31/82 (37%), Positives = 42/82 (51%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +    + V S  FSPDG LLA+G  D    +W   +     TL  HT  +T +
Sbjct: 208 TGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSL 267

Query: 604 RFSPSLSRLATSSADRTVRVWD 625
            +SP   RLA+ SAD T+R+WD
Sbjct: 268 AWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 17/40 (42%), Positives = 24/40 (60%)

Query: 586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           S  +  TL+ HT  +T V FSP    LA+ S D T+++WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 19/39 (48%), Positives = 24/39 (61%)

Query: 587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
             +  TL+ HT  +T V FSP  + LA+ S D TVRVWD
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 56.3 bits (134), Expect = 5e-08
 Identities = 28/78 (35%), Positives = 45/78 (57%)

Query: 556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           S V S  FSPDG+++++G  D    LW   + ++   L+ HT  +T + FSP    LA+ 
Sbjct: 371 SNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG 430

Query: 616 SADRTVRVWDTENPDYSL 633
           S+D T+R+WD +    S+
Sbjct: 431 SSDNTIRLWDLKTSLKSV 448

Length = 466

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 51.1 bits (122), Expect = 2e-06
 Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 8/88 (9%)

Query: 593 LEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVM 644
           L+ HT  I D++F+P  S  LA+ S D T+RVW+  + D S++          GH   + 
Sbjct: 70  LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS 129

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            +D++P    ++CS   +S +  W I N
Sbjct: 130 IIDWNPMNYYIMCSSGFDSFVNIWDIEN 157

Length = 568

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
           +      L+GH   V SV ++  G+YLAS S D  +++W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|149534 pfam08513, LisH, LisH

 Score = 42.3 bits (101), Expect = 1e-05
 Identities = 11/27 (40%), Positives = 16/27 (59%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEG 36
          + L+  IYDYL+K     +A+AF  E 
Sbjct: 1  EELNRLIYDYLVKSGYKETAEAFAKES 27

The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex. Length = 27

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 16/38 (42%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 713 VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
                L+GH   V SV ++  G  LAS S D  VRVW 
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|177776 PLN00181, PLN00181, protein SPA1-RELATED; Provisional

 Score = 47.4 bits (112), Expect = 3e-05
 Identities = 53/223 (23%), Positives = 96/223 (43%), Gaps = 29/223 (13%)

Query: 554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--------------W 599
           S++ V +  F  DG+  AT G +KK  ++  ES  +K   + H                W
Sbjct: 482 SSNLVCAIGFDRDGEFFATAGVNKKIKIFECESI-IKDGRDIHYPVVELASRSKLSGICW 540

Query: 600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
            + ++     S++A+S+ +  V+VWD       +     H   V S+D+  +   LL S 
Sbjct: 541 NSYIK-----SQVASSNFEGVVQVWDVARSQL-VTEMKEHEKRVWSIDYSSADPTLLASG 594

Query: 660 DNNSEIRYWSINNGSCAGVFKSGATQ--MRFQPRLGRILAAAIEN----YISILDVETQV 713
            ++  ++ WSIN G   G  K+ A    ++F    GR LA    +    Y  + + +  +
Sbjct: 595 SDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPL 654

Query: 714 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 756
           C   + GH   V  V +  S   ++S +D  +++W +     G
Sbjct: 655 C--TMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISG 695

Length = 793

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 15/39 (38%), Positives = 19/39 (48%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +    + +   T  V S  FSPDGK LA+G  D    LW
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLW 39

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 797 ENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
                TL  H   V+S+A S    ++AS S D  V++W 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 39.3 bits (92), Expect = 2e-04
 Identities = 14/32 (43%), Positives = 17/32 (53%)

Query: 551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLW 582
           +   T  V S  FSPDG LLA+G  D    +W
Sbjct: 7   LKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 7/93 (7%)

Query: 600 ITDVRFSP-SLSRLATSSADRTVRVWD------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           I DV F+P    +L T+S D T+  W       T+N    +    GH+  V  + FHPS 
Sbjct: 78  IIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA 137

Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQ 685
            ++L S   +  +  W +  G    V K  + Q
Sbjct: 138 MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQ 170

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 38.8 bits (91), Expect = 3e-04
 Identities = 13/40 (32%), Positives = 19/40 (47%)

Query: 796 TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           +     TL  H   V+S+A S     +AS S D  +K+W 
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 43.6 bits (103), Expect = 4e-04
 Identities = 15/51 (29%), Positives = 18/51 (35%)

Query: 81  SQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQH 131
           SQ         Q  QQ    QQ Q   + Q +     Q  QQQQ+    Q 
Sbjct: 224 SQAPAQPPLPPQLPQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQPPQPQA 274

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 43.7 bits (104), Expect = 4e-04
 Identities = 24/82 (29%), Positives = 27/82 (32%), Gaps = 8/82 (9%)

Query: 88  EQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAF 147
           +Q Q  Q Q Q  QQ QQ Q QQ   Q    Q  Q    +  Q L D     R G     
Sbjct: 625 QQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMG 684

Query: 148 TTKMYEDRLKKLPFQRDSLDDA 169
                          RD+L  A
Sbjct: 685 GEAGEAA--------RDALGRA 698

Length = 820

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           LRT  GH+  V S+ F P   +LL S  ++  +R W 
Sbjct: 4   LRTLKGHTGPVTSVAFSPD-GNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 42.2 bits (100), Expect = 0.001
 Identities = 20/66 (30%), Positives = 27/66 (40%), Gaps = 6/66 (9%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ------QQQRRDSTQHLNDTGDDLR 140
           + Q  QQ QQ Q  QQ QQ Q  Q      A++QQ       +QR        + G+  R
Sbjct: 633 QGQPGQQGQQGQGQQQGQQGQGGQGGQGSLAERQQALRDELGRQRGGLPGMGGEAGEAAR 692

Query: 141 PGFAKA 146
               +A
Sbjct: 693 DALGRA 698

Length = 820

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 37.0 bits (87), Expect = 0.001
 Identities = 9/30 (30%), Positives = 15/30 (50%)

Query: 10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVS 39
            L+  I +YLL+     +A+  Q E  +S
Sbjct: 4  SELNRLILEYLLRNGYEETAETLQKESGLS 33

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.0 bits (97), Expect = 0.002
 Identities = 11/44 (25%), Positives = 16/44 (36%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
           R+ Q+Q   Q  + Q  Q    Q         QQ Q Q++    
Sbjct: 609 RDLQEQFNAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQG 652

Length = 820

>gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 1/65 (1%)

Query: 62  IFIARTNEKHSESAASYIESQVIKAREQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQ 121
           + + R NE   E   +  + ++   R++ +Q +QQ Q+ ++  Q +  +L  Q  A+ Q 
Sbjct: 76  VGLLRENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARK-AQEKFAELARQEQAEAQA 134

Query: 122 QQQRR 126
           Q+Q  
Sbjct: 135 QRQYL 139

This family contains the bacterial type III secretion protein YscO, which is approximately 150 residues long. YscO has been shown to be required for high-level expression and secretion of the anti-host proteins V antigen and Yops in Yersinia pestis. Length = 152

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 46/228 (20%), Positives = 66/228 (28%), Gaps = 17/228 (7%)

Query: 89  QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
            Q QQQ Q    QQ      QQL  Q+  Q  QQQ   D+   +       + G      
Sbjct: 208 GQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMG----QQQQGQGGMQP 263

Query: 149 TKMYEDRLKKLPFQRDSLDDATIKP--RLSDNMTQLLDPNHATLLKAAAIGSQPSGQTLH 206
            +M   +++    Q+             L + M Q+         +      Q  G    
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323

Query: 207 GTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGSLIGVHG-----SNQGAGNV 261
           G   V Q V S  QQ     +            +     G+    H           G +
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQMNQQVGQGGQM 383

Query: 262 TLKGWPLTGLDQFRSGLLQQQK------SLTQPYNQLQLQQLMLQAQQ 303
              G+     +Q   G    Q+      S   P  Q+Q  Q M Q  Q
Sbjct: 384 VALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSMPQPPQ 431

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 59/309 (19%), Positives = 78/309 (25%), Gaps = 38/309 (12%)

Query: 193 AAAIGSQPSGQTLHGTHGVSQQVQSRSQQPPLSTQEVKTEMNPTMNPRAAGSEGS----- 247
           +     QP GQ        S Q QS+        Q         MN    G  G      
Sbjct: 136 SRVGTMQPGGQAGGMMQQSSGQPQSQQPNQMGPQQGQAQGQAGGMNQGQQGPVGQQQPPQ 195

Query: 248 ----LIGVHGSNQGAGNVTLKGWPLTGLDQFRSGLLQQQKSLT-----------QPYNQL 292
                +   G           G       Q +  L  QQ+              Q   Q 
Sbjct: 196 MGQPGMPGGGGQGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQ 255

Query: 293 QLQQLMLQAQQNLAS--------PSANDLESRKLRMLHNSRNMGLARDGSSNSVGDLVST 344
           Q Q  M   Q             P     +  +L ML N   M     G     G  +  
Sbjct: 256 QGQGGMQPQQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQ--MQQMPGGGQGGPGQPMGP 313

Query: 345 VGSAMQIISPGLPRGDNDLL------IKIQQQQQQLQHYSHHPLSSQQSQNSNPLLQQQD 398
                  +  G       ++      +K  + +             QQ  N     QQQ 
Sbjct: 314 PPQRPGAVPQGGQAVQQGVMSAGQQQLKQMKLRNMRGQQQTQQQQQQQGGNHPAAHQQQM 373

Query: 399 KILAGGSMTMDGSMSNTFQGN-DQASKNQIGRKRKQAVSSSGPANSSGTANTPGPTPSSP 457
               G    M        QGN      N + + +   +SS  P     T  +  P P  P
Sbjct: 374 NQQVGQGGQMVALGYLNIQGNQGGLGANPMQQGQPGMMSSPSPVPQVQTNQSM-PQPPQP 432

Query: 458 SSPSTHTPG 466
           S PS   PG
Sbjct: 433 SVPSPGGPG 441

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 41.5 bits (97), Expect = 0.002
 Identities = 47/223 (21%), Positives = 65/223 (29%), Gaps = 17/223 (7%)

Query: 89  QQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQHLNDTGDDLRPGFAKAFT 148
           QQ   Q Q Q+P Q    Q  Q   Q      Q QQ     Q     G    PG      
Sbjct: 152 QQSSGQPQSQQPNQ-MGPQQGQAQGQ-AGGMNQGQQGPVGQQQPPQMGQPGMPGGGG--- 206

Query: 149 TKMYEDRLKKLPFQRDSLDDATIKPRLSDNMTQLLDPNHATLLKAAAIGSQP---SGQTL 205
                   ++         +  ++ +L +   Q +D         A +G Q     G   
Sbjct: 207 ---QGQMQQQGQPGGQQQQNPQMQQQLQNQQQQQMDQQQGPADAQAQMGQQQQGQGGMQP 263

Query: 206 HGTHGVSQQVQSRSQQPPLSTQEVKTEMNPT----MNPRAAGSEGSLIGVHGSNQGAGNV 261
               G   QV  + Q P    Q+ +  M P     M     G  G  +G      GA   
Sbjct: 264 QQMQGGQMQVPMQQQPPQQQPQQSQLGMLPNQMQQMPGGGQGGPGQPMGPPPQRPGAVPQ 323

Query: 262 TLKGWPLTGLDQFRSGLLQQQKSLTQPYNQLQLQQLMLQAQQN 304
             +      +   +  L Q +  L     Q Q QQ   Q   N
Sbjct: 324 GGQAVQQGVMSAGQQQLKQMK--LRNMRGQQQTQQQQQQQGGN 364

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 40.4 bits (95), Expect = 0.003
 Identities = 11/34 (32%), Positives = 18/34 (52%)

Query: 802 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           TL  H   V+ +A S    ++A+ S D  +K+W 
Sbjct: 4   TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWD 37

Length = 289

>gnl|CDD|222374 pfam13779, DUF4175, Domain of unknown function (DUF4175)

 Score = 41.0 bits (97), Expect = 0.003
 Identities = 14/44 (31%), Positives = 18/44 (40%)

Query: 87  REQQQQQQQQHQKPQQHQQMQVQQLLLQRHAQQQQQQQRRDSTQ 130
             Q+ +QQ Q  +  Q Q    QQ    +  QQ QQ Q     Q
Sbjct: 616 NAQRGEQQGQQGQGGQGQGQPGQQGQQGQGQQQGQQGQGGQGGQ 659

Length = 820

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           L+T  GH+  V S+ F P     L S  ++  I+ W 
Sbjct: 5   LKTLKGHTGPVTSVAFSPD-GKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional

 Score = 40.3 bits (94), Expect = 0.004
 Identities = 27/115 (23%), Positives = 46/115 (40%), Gaps = 33/115 (28%)

Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILA 697
           GH+++++ L F+P   ++L S   +  IR W I +                         
Sbjct: 72  GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPH------------------------- 106

Query: 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSI 750
               N  S+ +++   C LK  GHK ++  + WN    Y+   S  D  V +W I
Sbjct: 107 ----NDESVKEIKDPQCILK--GHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDI 155

Length = 568

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	835
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
PLN00181	793	protein SPA1-RELATED; Provisional	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	99.98
KOG0284	464	consensus Polyadenylation factor I complex, subuni	99.98
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0295	406	consensus WD40 repeat-containing protein [Function	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	99.97
KOG0296	399	consensus Angio-associated migratory cell protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.97
KOG0266	456	consensus WD40 repeat-containing protein [General	99.97
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.96
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.96
KOG0645	312	consensus WD40 repeat protein [General function pr	99.96
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
PLN00181	793	protein SPA1-RELATED; Provisional	99.96
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.96
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.96
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0293	519	consensus WD40 repeat-containing protein [Function	99.95
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.95
KOG0289	506	consensus mRNA splicing factor [General function p	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
PTZ00421	493	coronin; Provisional	99.95
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.94
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.94
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.94
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.94
KOG2096	420	consensus WD40 repeat protein [General function pr	99.93
PTZ00421	493	coronin; Provisional	99.93
KOG0643	327	consensus Translation initiation factor 3, subunit	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.93
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.93
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.93
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.93
KOG1539	910	consensus WD repeat protein [General function pred	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.92
KOG0639	705	consensus Transducin-like enhancer of split protei	99.92
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.92
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.92
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1273	405	consensus WD40 repeat protein [General function pr	99.92
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.92
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.92
KOG0289	506	consensus mRNA splicing factor [General function p	99.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.91
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.91
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.91
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	99.91
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.9
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.9
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.9
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.89
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.89
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG1274	933	consensus WD40 repeat protein [General function pr	99.89
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.89
KOG0639	705	consensus Transducin-like enhancer of split protei	99.89
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG1539	910	consensus WD repeat protein [General function pred	99.88
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.88
KOG2055	514	consensus WD40 repeat protein [General function pr	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG2106	626	consensus Uncharacterized conserved protein, conta	99.88
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.88
KOG1274	933	consensus WD40 repeat protein [General function pr	99.87
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.87
KOG0646	476	consensus WD40 repeat protein [General function pr	99.87
KOG2048	691	consensus WD40 repeat protein [General function pr	99.87
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.87
KOG1063	764	consensus RNA polymerase II elongator complex, sub	99.85
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG2048	691	consensus WD40 repeat protein [General function pr	99.84
KOG4328	498	consensus WD40 protein [Function unknown]	99.84
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.84
KOG1273	405	consensus WD40 repeat protein [General function pr	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.84
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.83
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.82
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.82
KOG2096	420	consensus WD40 repeat protein [General function pr	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.82
KOG4328	498	consensus WD40 protein [Function unknown]	99.81
KOG4227	609	consensus WD40 repeat protein [General function pr	99.81
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.81
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.8
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.8
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.79
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.79
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.79
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.78
PRK11028	330	6-phosphogluconolactonase; Provisional	99.78
KOG1188	376	consensus WD40 repeat protein [General function pr	99.77
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.76
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.75
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.75
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.74
KOG1334	559	consensus WD40 repeat protein [General function pr	99.74
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.73
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.72
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.72
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.72
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.71
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.7
KOG0649	325	consensus WD40 repeat protein [General function pr	99.7
KOG1188	376	consensus WD40 repeat protein [General function pr	99.69
KOG0649	325	consensus WD40 repeat protein [General function pr	99.69
KOG1963	792	consensus WD40 repeat protein [General function pr	99.69
PRK01742	429	tolB translocation protein TolB; Provisional	99.67
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.67
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.66
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.66
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.65
KOG4227	609	consensus WD40 repeat protein [General function pr	99.65
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.65
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
KOG1310	758	consensus WD40 repeat protein [General function pr	99.65
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.64
PRK01742	429	tolB translocation protein TolB; Provisional	99.64
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.64
KOG2321	703	consensus WD40 repeat protein [General function pr	99.63
PRK03629	429	tolB translocation protein TolB; Provisional	99.63
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.63
KOG1963	792	consensus WD40 repeat protein [General function pr	99.62
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.62
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.62
KOG2139	445	consensus WD40 repeat protein [General function pr	99.61
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.58
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.58
PRK05137	435	tolB translocation protein TolB; Provisional	99.58
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.57
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.57
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.57
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.56
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.56
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.56
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.55
PRK02889	427	tolB translocation protein TolB; Provisional	99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.54
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.53
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.53
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.52
KOG2315	566	consensus Predicted translation initiation factor	99.52
PRK02889	427	tolB translocation protein TolB; Provisional	99.51
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.49
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.48
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.48
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.47
PRK05137	435	tolB translocation protein TolB; Provisional	99.47
PRK00178	430	tolB translocation protein TolB; Provisional	99.46
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.46
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.46
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.45
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.44
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.42
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.42
PRK04792	448	tolB translocation protein TolB; Provisional	99.42
KOG1334	559	consensus WD40 repeat protein [General function pr	99.42
KOG2321	703	consensus WD40 repeat protein [General function pr	99.42
KOG2139	445	consensus WD40 repeat protein [General function pr	99.41
KOG4594	354	consensus Sequence-specific single-stranded-DNA-bi	99.39
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.38
KOG1310	758	consensus WD40 repeat protein [General function pr	99.38
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.37
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.37
PRK01029	428	tolB translocation protein TolB; Provisional	99.34
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.32
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.31
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.3
PRK01029	428	tolB translocation protein TolB; Provisional	99.29
KOG4547	541	consensus WD40 repeat-containing protein [General	99.29
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.29
KOG2314	698	consensus Translation initiation factor 3, subunit	99.27
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.26
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.24
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.23
KOG2315	566	consensus Predicted translation initiation factor	99.22
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	99.21
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.2
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.19
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.15
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.15
KOG2314	698	consensus Translation initiation factor 3, subunit	99.15
KOG4547	541	consensus WD40 repeat-containing protein [General	99.13
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.13
PRK04043	419	tolB translocation protein TolB; Provisional	99.12
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.1
COG4946	668	Uncharacterized protein related to the periplasmic	99.1
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	99.1
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	99.07
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.06
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.04
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	99.04
PRK04043	419	tolB translocation protein TolB; Provisional	99.04
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.0
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.96
KOG1409	404	consensus Uncharacterized conserved protein, conta	98.95
COG4946	668	Uncharacterized protein related to the periplasmic	98.95
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.95
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.92
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.91
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.9
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.88
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.87
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.85
KOG1912	1062	consensus WD40 repeat protein [General function pr	98.85
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.84
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.84
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.84
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.83
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.82
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.74
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.7
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.68
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.68
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.65
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.65
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.63
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.62
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.61
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.57
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.56
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.53
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.52
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.51
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.5
PRK02888	635	nitrous-oxide reductase; Validated	98.49
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.49
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.47
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.46
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	98.45
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.43
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	98.37
COG3391	381	Uncharacterized conserved protein [Function unknow	98.37
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.33
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.33
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.31
PRK02888	635	nitrous-oxide reductase; Validated	98.31
KOG2695	425	consensus WD40 repeat protein [General function pr	98.3
KOG2695	425	consensus WD40 repeat protein [General function pr	98.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.3
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.3
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.3
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.29
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.28
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.27
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.26
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.22
KOG3621	726	consensus WD40 repeat-containing protein [General	98.2
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.2
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.15
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.14
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.13
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.09
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.09
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	98.09
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.09
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.07
COG3391	381	Uncharacterized conserved protein [Function unknow	98.06
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	98.06
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.04
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.01
KOG3621	726	consensus WD40 repeat-containing protein [General	97.94
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.93
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.91
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.89
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.86
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.81
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.81
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.79
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.79
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.78
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.77
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.76
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.61
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.6
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.55
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	97.53
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	97.49
PRK10115	686	protease 2; Provisional	97.47
PRK13616	591	lipoprotein LpqB; Provisional	97.46
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.45
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.42
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.38
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.3
PRK13616	591	lipoprotein LpqB; Provisional	97.19
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.19
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	97.1
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	97.09
COG5276	370	Uncharacterized conserved protein [Function unknow	97.06
KOG2395	644	consensus Protein involved in vacuole import and d	97.05
PF14727	418	PHTB1_N: PTHB1 N-terminus	97.04
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.04
PHA02713	557	hypothetical protein; Provisional	97.0
PRK10115	686	protease 2; Provisional	96.99
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	96.98
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.96
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.96
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.92
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.92
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.88
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.82
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.81
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.78
PRK13684	334	Ycf48-like protein; Provisional	96.77
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.68
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.65
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.61
PHA02713	557	hypothetical protein; Provisional	96.6
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.48
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.44
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.44
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.35
KOG2395	644	consensus Protein involved in vacuole import and d	96.32
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.25
KOG2444	238	consensus WD40 repeat protein [General function pr	96.2
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.2
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	96.13
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.11
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	96.07
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	96.02
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.01
KOG2377	657	consensus Uncharacterized conserved protein [Funct	95.99
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.95
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.92
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.92
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.81
PHA03098	534	kelch-like protein; Provisional	95.76
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	95.72
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	95.67
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	95.64
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.63
PHA03098	534	kelch-like protein; Provisional	95.62
KOG2444	238	consensus WD40 repeat protein [General function pr	95.47
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	95.36
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	95.3
PLN02153	341	epithiospecifier protein	95.3
PRK13684	334	Ycf48-like protein; Provisional	95.28
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.21
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.11
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.06
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.8
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	94.69
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.57
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	94.56
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	94.55
COG5276	370	Uncharacterized conserved protein [Function unknow	94.52
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	94.45
PRK10350	145	hypothetical protein; Provisional	94.44
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	94.41
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	94.4
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	94.24
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	94.14
PHA02790	480	Kelch-like protein; Provisional	94.08
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.07
PLN02193	470	nitrile-specifier protein	94.02
COG3292	671	Predicted periplasmic ligand-binding sensor domain	94.0
PLN02153	341	epithiospecifier protein	93.91
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	93.9
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	93.8
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.61
PF11498	468	Activator_LAG-3: Transcriptional activator LAG-3;	93.5
PHA02790	480	Kelch-like protein; Provisional	93.45
PLN02193	470	nitrile-specifier protein	93.32
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	93.21
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	93.19
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.99
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	92.93
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.9
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	92.86
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	92.62
PF14727	418	PHTB1_N: PTHB1 N-terminus	92.43
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	92.23
COG1770	682	PtrB Protease II [Amino acid transport and metabol	92.1
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	91.62
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	91.48
KOG2247	615	consensus WD40 repeat-containing protein [General	91.41
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	91.38
KOG1896	1366	consensus mRNA cleavage and polyadenylation factor	91.36
KOG2247	615	consensus WD40 repeat-containing protein [General	91.2
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	91.13
TIGR03547	346	muta_rot_YjhT mutatrotase, YjhT family. Members of	90.94
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	90.86
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.84
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	90.81
PF10433	504	MMS1_N: Mono-functional DNA-alkylating methyl meth	90.74
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.71
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	90.68
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.68
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	90.66
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	90.64
PF13449	326	Phytase-like: Esterase-like activity of phytase	90.32
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	90.3
PF08801	422	Nucleoporin_N: Nup133 N terminal like; InterPro: I	89.98
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	89.9
COG5167	776	VID27 Protein involved in vacuole import and degra	89.86
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	89.6
PRK05560	805	DNA gyrase subunit A; Validated	89.42
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	89.13
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	89.05
COG5167	776	VID27 Protein involved in vacuole import and degra	88.98
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	88.84
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	88.36
PF10395	670	Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an	88.27
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.15
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	87.97
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	87.77
COG1506	620	DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-pept	87.55
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.54
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	86.98
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	86.98
PRK05560	805	DNA gyrase subunit A; Validated	86.9

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.8e-44  Score=371.61  Aligned_cols=306  Identities=25%  Similarity=0.389  Sum_probs=275.9

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ....+++|+-|.++++|+.                   .+-.+..+.++|..-|.|++|+|||+.||+|+.||.|++||.
T Consensus       126 ~g~~l~tGsGD~TvR~WD~-------------------~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdp  186 (480)
T KOG0271|consen  126 TGSRLVTGSGDTTVRLWDL-------------------DTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDP  186 (480)
T ss_pred             CCceEEecCCCceEEeecc-------------------CCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecC
Confidence            3378999999999999932                   233457788999999999999999999999999999999999


Q ss_pred             CCCeEE-EEeccCCCCeEEEEECC-----CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          585 ESFTVK-STLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       585 ~t~~~i-~~l~~h~~~V~sv~fsp-----dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      ++++.+ ..+.+|...|++++|.|     ..++|++++.||.|+|||+..+. ++..+.+|..+|+|+.|--  ..++++
T Consensus       187 ktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~-~~~~lsgHT~~VTCvrwGG--~gliyS  263 (480)
T KOG0271|consen  187 KTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGT-CVRTLSGHTASVTCVRWGG--EGLIYS  263 (480)
T ss_pred             CCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCce-EEEEeccCccceEEEEEcC--CceEEe
Confidence            998766 78899999999999976     57899999999999999999765 5899999999999999984  458999


Q ss_pred             EeCCCcEEEEECCCCeeeeEeecC---ceEEEE-----------ecCCC-------------------------EEEEEE
Q 003271          659 CDNNSEIRYWSINNGSCAGVFKSG---ATQMRF-----------QPRLG-------------------------RILAAA  699 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~f-----------sp~~~-------------------------~ll~~s  699 (835)
                      |+.|++|++|+...|++.+.++++   ++.++.           .|.+.                         .+++|+
T Consensus       264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs  343 (480)
T KOG0271|consen  264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS  343 (480)
T ss_pred             cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence            999999999999999998888755   555543           34444                         499999


Q ss_pred             cCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          700 IENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       700 ~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                      .|..+.+|+... .+++..+.+|...|..+.|+||++||++++ |..|++||-+++   +.+.++.+|-..|+.|+|+.|
T Consensus       344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tG---k~lasfRGHv~~VYqvawsaD  420 (480)
T KOG0271|consen  344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTG---KFLASFRGHVAAVYQVAWSAD  420 (480)
T ss_pred             CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCc---chhhhhhhccceeEEEEeccC
Confidence            999999999865 458889999999999999999999999999 999999999999   889999999999999999999


Q ss_pred             CCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          778 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       778 g~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+.|++++.|.++++||+++.++. .+.+|.+.|.++.|+|||..+++|+.|+.++||.
T Consensus       421 sRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  421 SRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             ccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999987 7889999999999999999999999999999995

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=3.6e-42  Score=356.91  Aligned_cols=287  Identities=24%  Similarity=0.382  Sum_probs=264.0

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ++-..+.||.++|.|+.|+|+|..||+|+.|.++++||+.+..+..++++|...|.||+|+|||+.||+|+.||+|++||
T Consensus       106 rCssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  106 RCSSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWD  185 (480)
T ss_pred             eeccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEec
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEE
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAA  698 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~----g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~  698 (835)
                      ..++...-+.+.+|...|++++|.|-    ...++++++.||.|+|||+..+.++..+.++   ++|++|--+ ++++++
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~-gliySg  264 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGE-GLIYSG  264 (480)
T ss_pred             CCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCC-ceEEec
Confidence            99999888999999999999999873    2347889999999999999999999888765   888888755 789999


Q ss_pred             EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc-----------CCCC-------------------------EEEEEe-
Q 003271          699 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----------TSGE-------------------------YLASVS-  741 (835)
Q Consensus       699 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs-----------pdg~-------------------------~Lasgs-  741 (835)
                      +.|++|++|+...+.+...+.+|...|+.++.+           |.++                         .|++|+ 
T Consensus       265 S~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsD  344 (480)
T KOG0271|consen  265 SQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSD  344 (480)
T ss_pred             CCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecC
Confidence            999999999999999999999999999998876           3333                         499999 


Q ss_pred             CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCC
Q 003271          742 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG  820 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~  820 (835)
                      |.++.+|+-...+  +++....+|...|+.+.|+||+++|++++.|..|++||.++|+.+ .+.+|-..|+.++|+.|.+
T Consensus       345 d~tlflW~p~~~k--kpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsR  422 (480)
T KOG0271|consen  345 DFTLFLWNPFKSK--KPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSR  422 (480)
T ss_pred             CceEEEecccccc--cchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCcc
Confidence            7799999976542  678888999999999999999999999999999999999999988 7889999999999999999


Q ss_pred             EEEEEECCCcEEEeC
Q 003271          821 MVASASHDKCVKIWK  835 (835)
Q Consensus       821 ~LaSgs~DG~V~IWd  835 (835)
                      +|++|+.|.+++|||
T Consensus       423 LlVS~SkDsTLKvw~  437 (480)
T KOG0271|consen  423 LLVSGSKDSTLKVWD  437 (480)
T ss_pred             EEEEcCCCceEEEEE
Confidence            999999999999996

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.5e-40  Score=349.61  Aligned_cols=283  Identities=27%  Similarity=0.437  Sum_probs=264.8

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEe
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWD  625 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWD  625 (835)
                      +..--+-+.+|..+.|+.|++.||||+.+|.++||+..+...+.+|.+|...|.++.|+|.  +..++||+.||+|++|+
T Consensus       168 ~~SQ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~  247 (459)
T KOG0272|consen  168 VCSQVGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWK  247 (459)
T ss_pred             hhhhccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeec
Confidence            3334477889999999999999999999999999999999999999999999999999996  66899999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCC
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      +++.. ++..+.+|...|..++|+|+|+ +|.+++.|.+-++||++++..+....   .++.+++|.++|..+++|+.|.
T Consensus       248 ~~~e~-~l~~l~gH~~RVs~VafHPsG~-~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~  325 (459)
T KOG0272|consen  248 LSQET-PLQDLEGHLARVSRVAFHPSGK-FLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDS  325 (459)
T ss_pred             cCCCc-chhhhhcchhhheeeeecCCCc-eeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccc
Confidence            99754 5889999999999999999987 67799999999999999988775554   4599999999999999999999


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC-CCCE
Q 003271          703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPS  780 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp-dg~~  780 (835)
                      .-+|||+++++++..+.+|...|.+|.|+|+|..|++|+ |++++|||++..   ..+..+..|.+-|+.|.|+| .|.+
T Consensus       326 ~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r---~~ly~ipAH~nlVS~Vk~~p~~g~f  402 (459)
T KOG0272|consen  326 LGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMR---SELYTIPAHSNLVSQVKYSPQEGYF  402 (459)
T ss_pred             hhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeeccc---ccceecccccchhhheEecccCCeE
Confidence            999999999999999999999999999999999999999 999999999987   67899999999999999998 7899


Q ss_pred             EEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          781 LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       781 L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |++++.|++++||...+..++ .+.+|++.|.++.+++|+.+|+|++.|.+|++|.
T Consensus       403 L~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  403 LVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             EEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            999999999999999999988 7889999999999999999999999999999994

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=7.8e-38  Score=315.72  Aligned_cols=290  Identities=18%  Similarity=0.323  Sum_probs=262.9

Q ss_pred             ceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  622 (835)
Q Consensus       543 ~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~  622 (835)
                      ..+...++|+||.++|+++.|++|.++|++++.||++.|||.-+...++.++-....|..++|+|.++++|.|+-|+.+.
T Consensus        43 i~~~~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Cs  122 (343)
T KOG0286|consen   43 IQMRTRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCS  122 (343)
T ss_pred             eeeeeEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeE
Confidence            34555689999999999999999999999999999999999999988888988999999999999999999999999999


Q ss_pred             EEecCCC--C---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEec-CCC
Q 003271          623 VWDTENP--D---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQP-RLG  693 (835)
Q Consensus       623 IWDl~t~--~---~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp-~~~  693 (835)
                      ||++.+.  +   ...+.+.+|.+.+.|+.|.+|+  .|++++.|.++.+||++++..+..|.++   +.++.+.| +++
T Consensus       123 iy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~--~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n  200 (343)
T KOG0286|consen  123 IYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDN--HILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN  200 (343)
T ss_pred             EEecccccccccceeeeeecCccceeEEEEEcCCC--ceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence            9999865  2   2357789999999999999864  3558999999999999999999998755   88899999 899


Q ss_pred             EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      .+++|+.|+..++||++.+.++..|.+|...|.+|+|.|+|.-+++|+ |++.++||++.... ..+.........|+++
T Consensus       201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-~a~ys~~~~~~gitSv  279 (343)
T KOG0286|consen  201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-LAVYSHDSIICGITSV  279 (343)
T ss_pred             eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-EeeeccCcccCCceeE
Confidence            999999999999999999999999999999999999999999999999 88999999998732 2223333445689999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          773 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|+..|++|++|..|.++.+||.-.++.+ .+.+|+..|+++..+|||..|+||+.|..|+||.
T Consensus       280 ~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~  343 (343)
T KOG0286|consen  280 AFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA  343 (343)
T ss_pred             EEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence            99999999999999999999999888877 8889999999999999999999999999999994

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=5.5e-38  Score=330.21  Aligned_cols=270  Identities=26%  Similarity=0.378  Sum_probs=250.6

Q ss_pred             cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC--CCEEEEEeCCCe
Q 003271          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKK  578 (835)
Q Consensus       501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd--g~~Lasgs~Dg~  578 (835)
                      .+...+..+++||.++.+++|..+                   ....+.++.+|+..|.++.|+|.  +..||+|+.||+
T Consensus       182 ~fS~ds~~laT~swsG~~kvW~~~-------------------~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgt  242 (459)
T KOG0272|consen  182 SFSRDSKHLATGSWSGLVKVWSVP-------------------QCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGT  242 (459)
T ss_pred             EeecCCCeEEEeecCCceeEeecC-------------------CcceeEEEeccccceeeEEEccCCCccceeeeccCCc
Confidence            344455799999999999999332                   23568889999999999999996  568999999999


Q ss_pred             EEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      |++|++++..++..+.+|...|..++|+|+|++|+|+|.|.+-++||+.++.. +....+|...|.+++|+++|. ++++
T Consensus       243 vklw~~~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~E-lL~QEGHs~~v~~iaf~~DGS-L~~t  320 (459)
T KOG0272|consen  243 VKLWKLSQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSE-LLLQEGHSKGVFSIAFQPDGS-LAAT  320 (459)
T ss_pred             eeeeccCCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchh-hHhhcccccccceeEecCCCc-eeec
Confidence            99999999999999999999999999999999999999999999999999775 677889999999999999987 8899


Q ss_pred             EeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CC
Q 003271          659 CDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SG  734 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp-dg  734 (835)
                      |+.|..-+|||+++++++..+.++   |..+.|+|+|-.+++|+.|++++|||++...++..+.+|.+-|+.|+|+| .|
T Consensus       321 GGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g  400 (459)
T KOG0272|consen  321 GGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEG  400 (459)
T ss_pred             cCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCC
Confidence            999999999999999999988765   88899999999999999999999999999999999999999999999998 78


Q ss_pred             CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          735 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       735 ~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      .+|++++ |++++||..++.   .++..+.+|.+.|.+|.+++++.+|++++.|.+|++|.
T Consensus       401 ~fL~TasyD~t~kiWs~~~~---~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~  458 (459)
T KOG0272|consen  401 YFLVTASYDNTVKIWSTRTW---SPLKSLAGHEGKVISLDISPDSQAIATSSFDRTIKLWR  458 (459)
T ss_pred             eEEEEcccCcceeeecCCCc---ccchhhcCCccceEEEEeccCCceEEEeccCceeeecc
Confidence            9999999 999999999888   88999999999999999999999999999999999995

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.3e-35  Score=300.79  Aligned_cols=287  Identities=24%  Similarity=0.439  Sum_probs=261.4

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc-CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~-~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      ..+-.+.+|.+.|+++.|+|+|.+||+|+.|..|.+|++ ...+-...+++|.+.|..+.|.+|++.|++++.|.+|+.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            345567899999999999999999999999999999995 4556677889999999999999999999999999999999


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcCC
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      |+++++. .+.+.+|...|.+++-+..|..++++++.|+++++||+++..+++++  +..++++.|.-.+..+++|+-|+
T Consensus       118 D~~tG~~-~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn  196 (338)
T KOG0265|consen  118 DAETGKR-IRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN  196 (338)
T ss_pred             eccccee-eehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence            9999885 88899999999999977778889999999999999999999999988  56799999999999999999999


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ceEEEeecCC----CceEEEEEeC
Q 003271          703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTG----NKFHSCVFHP  776 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~-~~i~~l~~~~----~~V~sv~fsp  776 (835)
                      .|++||++.....+.+.+|...|+.+..+++|.++.+-+ |.+|++||++..... .++..+.++.    .....|+|+|
T Consensus       197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp  276 (338)
T KOG0265|consen  197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSP  276 (338)
T ss_pred             ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccC
Confidence            999999999999999999999999999999999999999 999999999875432 3466666553    3457789999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      +++++-+|+.|..+++||.....++ .+.+|.+.|+++.|+|...+|.+++.|++|++
T Consensus       277 ~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~l  334 (338)
T KOG0265|consen  277 NGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYL  334 (338)
T ss_pred             CCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence            9999999999999999999986665 89999999999999999999999999999986

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.1e-34  Score=286.80  Aligned_cols=283  Identities=20%  Similarity=0.336  Sum_probs=244.4

Q ss_pred             EEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcC-----CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271          546 TEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTE-----SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~-----t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg  619 (835)
                      ....++++|++.|+.++..+. ...|++++.|.+|.+|++.     .|..++.+++|+..|..+..++||.+.++++.|+
T Consensus         6 ~l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~   85 (315)
T KOG0279|consen    6 VLRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDG   85 (315)
T ss_pred             eeeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCCceEEeccccc
Confidence            345678999999999999986 4578999999999999864     4677899999999999999999999999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecC--CC
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPR--LG  693 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~--~~  693 (835)
                      ++++||+.+++ ..+.|.+|...|.+++|++++. -+++|+.|.+|++|++...-......    .-+.+++|+|+  ..
T Consensus        86 ~lrlWDl~~g~-~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p  163 (315)
T KOG0279|consen   86 TLRLWDLATGE-STRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNP  163 (315)
T ss_pred             eEEEEEecCCc-EEEEEEecCCceEEEEecCCCc-eeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCc
Confidence            99999999985 5899999999999999999966 66799999999999998554443333    23899999999  67


Q ss_pred             EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      .|+.++.|+.|++||+++.+....+.+|.+.++.+.++|||.++++|+ ||.+.+||++.+   +++..+. +...|.++
T Consensus       164 ~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~---k~lysl~-a~~~v~sl  239 (315)
T KOG0279|consen  164 IIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEG---KNLYSLE-AFDIVNSL  239 (315)
T ss_pred             EEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCC---ceeEecc-CCCeEeeE
Confidence            888999999999999999999999999999999999999999999999 999999999988   5666554 68899999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEEcCCCcEE-E----eccC-----CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          773 VFHPTFPSLLVIGCYETLELWNMTENKTL-T----LSAH-----DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~----l~~h-----~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|+|+...|+.+ .+..|+|||++++.++ .    ..+.     .-...+++|++||..|++|-.|+.|++|.
T Consensus       240 ~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~q  311 (315)
T KOG0279|consen  240 CFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQ  311 (315)
T ss_pred             EecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEE
Confidence            999997655554 4456999999998876 1    1122     22356789999999999999999999994

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=2.1e-33  Score=322.59  Aligned_cols=284  Identities=30%  Similarity=0.535  Sum_probs=255.2

Q ss_pred             EEEecC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          548 FQLIPA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       548 i~~l~g-H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      +..+.+ |...|.|+.|+++|++|++++.|+.|++|+..+.+  ....+.+|...|.+++|+|+++++++++.|++|+||
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriw  230 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIW  230 (456)
T ss_pred             eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEe
Confidence            455545 48999999999999999999999999999998877  777888999999999999999999999999999999


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcC
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~d  701 (835)
                      |+......++++.+|...|++++|+|++ .++++|+.|++|+|||+++++++..+..   .++.++|++++..|++++.|
T Consensus       231 d~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d  309 (456)
T KOG0266|consen  231 DLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYD  309 (456)
T ss_pred             eccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCC
Confidence            9966656789999999999999999999 7899999999999999999999988874   48999999999999999999


Q ss_pred             CcEEEEECCCCe--EEEEEcCCCCC--eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc---eEEEE
Q 003271          702 NYISILDVETQV--CRLKLQGHKNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV  773 (835)
Q Consensus       702 g~I~IwDl~t~~--~i~~l~~h~~~--I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~---V~sv~  773 (835)
                      +.|+|||+.++.  ++..+.++...  +++++|+|++.+|+++. |+.+++||+..+   .++..+.+|...   +.+..
T Consensus       310 ~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~---~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  310 GTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSG---KSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             ccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCC---cceeeecccCCcceeEeccc
Confidence            999999999998  56777776665  99999999999999999 889999999988   677777777664   44455


Q ss_pred             EeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 003271          774 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASAS--HDKCVKIWK  835 (835)
Q Consensus       774 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h-~~~V~~la~spdg~~LaSgs--~DG~V~IWd  835 (835)
                      +++.+.++++++.|+.|++||+.++..+ .+.+| ...|..+++++...++++++  .|+.|++|+
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~  452 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWK  452 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEec
Confidence            6789999999999999999999987766 78889 89999999999999999998  789999995

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=3.2e-33  Score=293.91  Aligned_cols=282  Identities=32%  Similarity=0.543  Sum_probs=253.1

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      +.+.+|.++|++++|+|++++|++++.||.|++|++.+++....+..|...+.++.|++++++|++++.||.|++||+.+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~   82 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLET   82 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCc
Confidence            45679999999999999999999999999999999999888888889999999999999999999999999999999997


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEE
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      .+. ...+..|...|.++.|++++ .++++++.|+.|++||+.+++....+.   ..+.++.|+|++..+++++.++.|+
T Consensus        83 ~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~  160 (289)
T cd00200          83 GEC-VRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIK  160 (289)
T ss_pred             ccc-eEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEE
Confidence            653 66777888899999999984 477788889999999999888777665   3488999999988777777799999


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271          706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg  784 (835)
                      +||+++++.+..+..|...|.+++|++++..+++++ |+.|++||++.+   ..+..+..+...+.++.|++++.+++++
T Consensus       161 i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~  237 (289)
T cd00200         161 LWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG---KCLGTLRGHENGVNSVAFSPDGYLLASG  237 (289)
T ss_pred             EEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCC---ceecchhhcCCceEEEEEcCCCcEEEEE
Confidence            999999988888888999999999999998888888 999999999886   6666776788899999999998888877


Q ss_pred             EcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          785 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       785 s~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.++.|++||+.+++.. .+..|...|.+++|++++.+|++++.||.|++||
T Consensus       238 ~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         238 SEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             cCCCcEEEEEcCCceeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            77999999999987766 6668889999999999999999999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=5.7e-35  Score=302.59  Aligned_cols=288  Identities=25%  Similarity=0.467  Sum_probs=269.7

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      .+.+...+.+|..+|+.+-|.|+-.++++++.|++|++||..++++...+++|.+.|.+|+|+..|++|++++.|-.+++
T Consensus        97 Rp~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~L  176 (406)
T KOG0295|consen   97 RPNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELERSLRGHTDSVFDISFDASGKYLATCSSDLSAKL  176 (406)
T ss_pred             CCCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhhhhhccccceeEEEEecCccEEEecCCccchhh
Confidence            33456677899999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEc
Q 003271          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~  700 (835)
                      ||..+...+++...+|...|.+++|-|.|. .+++|+.|.+|+.|++.++.|++++.++   +..++.+.||..+++++.
T Consensus       177 Wd~~~~~~c~ks~~gh~h~vS~V~f~P~gd-~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~  255 (406)
T KOG0295|consen  177 WDFDTFFRCIKSLIGHEHGVSSVFFLPLGD-HILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN  255 (406)
T ss_pred             eeHHHHHHHHHHhcCcccceeeEEEEecCC-eeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence            999976556888999999999999999986 6669999999999999999999999876   888999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC---------------CCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271          701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTS---------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC  764 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd---------------g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~  764 (835)
                      |.+|++|-+.++.+...+..|..+|.|++|.|.               +.++++++ |++|++||+.++   .|+.++.+
T Consensus       256 dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg---~cL~tL~g  332 (406)
T KOG0295|consen  256 DQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG---MCLFTLVG  332 (406)
T ss_pred             CceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC---eEEEEEec
Confidence            999999999999999999999999999999762               25888999 999999999999   99999999


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       765 ~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |.+.|..++|+|.|+||+++..|++|++||+.++.++ .+..|+.-|+++.|+.+..+++||+-|-++++|.
T Consensus       333 hdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  333 HDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             ccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            9999999999999999999999999999999999998 7789999999999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=3.7e-33  Score=300.27  Aligned_cols=337  Identities=19%  Similarity=0.366  Sum_probs=277.9

Q ss_pred             CccccCccccCCCcEEEeccCCCCEEEeecCCC------------------------------CCCCcccccccccCCCc
Q 003271          494 SLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDD------------------------------ADPRDRVGRSAEVGKGF  543 (835)
Q Consensus       494 ~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~------------------------------~~~~~~~~~~~~~~~g~  543 (835)
                      .+......+.+...++++|...++|++|.....                              .++++++++.+.++++.
T Consensus        59 ~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG~  138 (603)
T KOG0318|consen   59 AHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSGN  138 (603)
T ss_pred             cceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCCC
Confidence            444555566666789999999999999965552                              14677888888888887


Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  622 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~  622 (835)
                      ...++   .||...|.+|+|-|...+ +++|+.|++|.+|+-...+...++..|...|.|++|+|||.+|++++.||.|.
T Consensus       139 SvGei---~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~  215 (603)
T KOG0318|consen  139 SVGEI---TGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIY  215 (603)
T ss_pred             cccee---eccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEE
Confidence            76664   599999999999998775 99999999999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce----EEEEecCCCEE
Q 003271          623 VWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT----QMRFQPRLGRI  695 (835)
Q Consensus       623 IWDl~t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~----~l~fsp~~~~l  695 (835)
                      |||-.+++. +..+.   +|.+.|.+++|+||+.. +++++.|.+++|||+.+.+++.++..+..    .+-.-...+.|
T Consensus       216 iyDGktge~-vg~l~~~~aHkGsIfalsWsPDs~~-~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~l  293 (603)
T KOG0318|consen  216 IYDGKTGEK-VGELEDSDAHKGSIFALSWSPDSTQ-FLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHL  293 (603)
T ss_pred             EEcCCCccE-EEEecCCCCccccEEEEEECCCCce-EEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeE
Confidence            999998875 56665   89999999999999875 55999999999999999999998875422    12222226899


Q ss_pred             EEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce--------EE------
Q 003271          696 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------IH------  760 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~--------i~------  760 (835)
                      ++.+.+|.|.+++.....+...+.+|...|+++..++++++|++|+ ||.|.-||..++...+.        +.      
T Consensus       294 ItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~  373 (603)
T KOG0318|consen  294 ITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASE  373 (603)
T ss_pred             EEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecC
Confidence            9999999999999999999999999999999999999999999999 99999999764321100        00      


Q ss_pred             --------------------------------------------------------------------------------
Q 003271          761 --------------------------------------------------------------------------------  760 (835)
Q Consensus       761 --------------------------------------------------------------------------------  760 (835)
                                                                                                      
T Consensus       374 ~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~  453 (603)
T KOG0318|consen  374 SGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSP  453 (603)
T ss_pred             CCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcC
Confidence                                                                                            


Q ss_pred             ----------------------------EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccCCCCe
Q 003271          761 ----------------------------ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLV  810 (835)
Q Consensus       761 ----------------------------~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V  810 (835)
                                                  .+..|..+|++++|+||+.+|+++...+.|.+||+.+.+..  .+.-|...|
T Consensus       454 ~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI  533 (603)
T KOG0318|consen  454 DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKI  533 (603)
T ss_pred             CCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeE
Confidence                                        01123445666777777777777777777777777666654  445699999


Q ss_pred             eEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          811 SSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       811 ~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+++|+|+..+||||+-|-.|.||+
T Consensus       534 ~~~aWsP~n~~vATGSlDt~Viiys  558 (603)
T KOG0318|consen  534 NCVAWSPNNKLVATGSLDTNVIIYS  558 (603)
T ss_pred             EEEEeCCCceEEEeccccceEEEEE
Confidence            9999999999999999999999995

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=2.2e-33  Score=302.02  Aligned_cols=305  Identities=21%  Similarity=0.350  Sum_probs=260.7

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~  587 (835)
                      .+++|+.|..|..|                   .|.+|+-..+++.|..-|.|+.|+|||.++|+++.||+|.|||-.++
T Consensus       162 Ri~T~sdDn~v~ff-------------------eGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  162 RIATGSDDNTVAFF-------------------EGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             EEEeccCCCeEEEe-------------------eCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            57788888888888                   57778888889999999999999999999999999999999999999


Q ss_pred             eEEEEec---cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc---------------------------------
Q 003271          588 TVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---------------------------------  631 (835)
Q Consensus       588 ~~i~~l~---~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~---------------------------------  631 (835)
                      +.+..+.   +|.+.|.++.|+||+..|+|++.|.+++|||+.+.+.                                 
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence            9999997   8999999999999999999999999999999976541                                 


Q ss_pred             ---------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-------------------------
Q 003271          632 ---------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-------------------------  677 (835)
Q Consensus       632 ---------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~-------------------------  677 (835)
                               ++..+.+|...|+++..+++++ .|++|+.||.|.-||+.++..-+                         
T Consensus       303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~-~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g  381 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHNKSITALTVSPDGK-TIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIG  381 (603)
T ss_pred             EEecccCCChhheecccccceeEEEEcCCCC-EEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEe
Confidence                     1335678999999999999985 66799999999999987653210                         


Q ss_pred             ------Ee------------------------------------------e-----------cCceEEEEecCCCEEEEE
Q 003271          678 ------VF------------------------------------------K-----------SGATQMRFQPRLGRILAA  698 (835)
Q Consensus       678 ------~~------------------------------------------~-----------~~i~~l~fsp~~~~ll~~  698 (835)
                            .+                                          .           -...+++++|++..+++|
T Consensus       382 ~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVG  461 (603)
T KOG0318|consen  382 WDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVG  461 (603)
T ss_pred             cCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEe
Confidence                  00                                          0           114567899999999999


Q ss_pred             EcCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271          699 AIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  775 (835)
Q Consensus       699 s~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs  775 (835)
                      +.|+.|+||.+....  ....+..|..+|++++|+||+.||++|. .+.|.+||+.+...  .......|...|.+++|+
T Consensus       462 G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~--~~~~w~FHtakI~~~aWs  539 (603)
T KOG0318|consen  462 GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREV--KTNRWAFHTAKINCVAWS  539 (603)
T ss_pred             cccceEEEEEecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCce--ecceeeeeeeeEEEEEeC
Confidence            999999999998754  3335566999999999999999999999 99999999998742  444556689999999999


Q ss_pred             CCCCEEEEEEcCCeEEEEEcCCCcE--EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          776 PTFPSLLVIGCYETLELWNMTENKT--LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       776 pdg~~L~sgs~dg~I~IwDl~~~~~--~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |+..++++|+-|-.|.||+++....  ....+|...|+.+.|- |...|++.+.|..|++|.
T Consensus       540 P~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~  600 (603)
T KOG0318|consen  540 PNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWN  600 (603)
T ss_pred             CCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEe-cCceEEeccCcceeEEec
Confidence            9999999999999999999976543  3556899899999996 456899999999999995

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.9e-34  Score=297.37  Aligned_cols=288  Identities=20%  Similarity=0.383  Sum_probs=264.1

Q ss_pred             CceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q 003271          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (835)
Q Consensus       542 g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I  621 (835)
                      -.++...+++.+|.+-|.|+++.|...+|++|+.|++|+|||+.++++..++.+|-..|..+++++...||++++.|+.|
T Consensus       138 HapwKl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~V  217 (460)
T KOG0285|consen  138 HAPWKLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQV  217 (460)
T ss_pred             cCcceehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCee
Confidence            35677888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEE
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAA  698 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~  698 (835)
                      ++||++..+. ++.+.+|-+.|.|++.+|.-+ +|++|+.|.++++||+++...+..+.++   +..+.+.|.+..++++
T Consensus       218 KCwDLe~nkv-IR~YhGHlS~V~~L~lhPTld-vl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~  295 (460)
T KOG0285|consen  218 KCWDLEYNKV-IRHYHGHLSGVYCLDLHPTLD-VLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITG  295 (460)
T ss_pred             EEEechhhhh-HHHhccccceeEEEeccccce-eEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEe
Confidence            9999998774 899999999999999999854 7889999999999999999988888754   8888899999999999


Q ss_pred             EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271          699 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  778 (835)
Q Consensus       699 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg  778 (835)
                      +.|++|++||++.++....+..|...|.+++.+|....+++++.+.|+.|++..+   ..+..+.+|...|++++...|+
T Consensus       296 S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dnik~w~~p~g---~f~~nlsgh~~iintl~~nsD~  372 (460)
T KOG0285|consen  296 SHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDNIKQWKLPEG---EFLQNLSGHNAIINTLSVNSDG  372 (460)
T ss_pred             cCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCccceeccCCcc---chhhccccccceeeeeeeccCc
Confidence            9999999999999999999999999999999999999999999778999999988   6777799999999999998887


Q ss_pred             CEEEEEEcCCeEEEEEcCCCcEEEe---------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          779 PSLLVIGCYETLELWNMTENKTLTL---------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       779 ~~L~sgs~dg~I~IwDl~~~~~~~l---------~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                       ++++|+..|.|.+||.+++-....         ...+..|++.+|...|..|++|..|++|++|+
T Consensus       373 -v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~k  437 (460)
T KOG0285|consen  373 -VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYK  437 (460)
T ss_pred             -eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEe
Confidence             688999999999999998865511         12356799999999999999999999999995

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=1.4e-33  Score=279.18  Aligned_cols=287  Identities=22%  Similarity=0.314  Sum_probs=249.9

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ..-++++++.|.+|++|-                   ..+..+.+++....+.|..+.+.||+++||+++. -.|++||+
T Consensus         9 ~~viLvsA~YDhTIRfWq-------------------a~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~   68 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQ-------------------ALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDL   68 (311)
T ss_pred             CceEEEeccCcceeeeee-------------------hhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEc
Confidence            456899999999999992                   2333567788888899999999999999999885 68999999


Q ss_pred             CCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271          585 ESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       585 ~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      .+++  ++.++.+|+..|++|.|..+|++++||++||+++|||++...  ......|.++|+++..+|+-.. |++|+.+
T Consensus        69 ~S~np~Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~--~qR~~~~~spVn~vvlhpnQte-Lis~dqs  145 (311)
T KOG0315|consen   69 NSNNPNPVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS--CQRNYQHNSPVNTVVLHPNQTE-LISGDQS  145 (311)
T ss_pred             cCCCCCceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc--cchhccCCCCcceEEecCCcce-EEeecCC
Confidence            8765  589999999999999999999999999999999999999844  3444457899999999998664 5599999


Q ss_pred             CcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCC------eEEEEEcCCCCCeEEEEEcC
Q 003271          663 SEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQ------VCRLKLQGHKNQVHSVCWNT  732 (835)
Q Consensus       663 g~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~------~~i~~l~~h~~~I~sl~fsp  732 (835)
                      |.|++||+....+...+-    ..+.++.+.|+|.+++++...|..++|++-+.      +++.++..|...|..+.+||
T Consensus       146 g~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSP  225 (311)
T KOG0315|consen  146 GNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSP  225 (311)
T ss_pred             CcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECC
Confidence            999999999886665543    45889999999999999999999999998753      56677889999999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCe
Q 003271          733 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLV  810 (835)
Q Consensus       733 dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V  810 (835)
                      |++||++++ |.+++||+..+.  .+.-..+.+|...++.|+|+.++.||++++.|+.+++||+..++.+ ...+|-...
T Consensus       226 d~k~lat~ssdktv~iwn~~~~--~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~  303 (311)
T KOG0315|consen  226 DVKYLATCSSDKTVKIWNTDDF--FKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAA  303 (311)
T ss_pred             CCcEEEeecCCceEEEEecCCc--eeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCccccc
Confidence            999999999 999999999876  3556678889999999999999999999999999999999999977 677888887


Q ss_pred             eEEEEe
Q 003271          811 SSLAAS  816 (835)
Q Consensus       811 ~~la~s  816 (835)
                      .|++..
T Consensus       304 vc~~ln  309 (311)
T KOG0315|consen  304 VCVALN  309 (311)
T ss_pred             EEEEee
Confidence            777764

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=2.2e-33  Score=277.82  Aligned_cols=266  Identities=19%  Similarity=0.392  Sum_probs=239.7

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-eeEEeecCCCCeEEE
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSL  646 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h~~~V~sl  646 (835)
                      -+|++++.|.+|++|...+|.+..++.....-|..+.+.|+++.||+++.- .|++||+.++.. ++..+.+|...|+++
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv~t~e~h~kNVtaV   89 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPVATFEGHTKNVTAV   89 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCceeEEeccCCceEEE
Confidence            479999999999999999999999998878899999999999999998765 699999998765 789999999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-CCC
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKN  723 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~~  723 (835)
                      .|..+|+ .+++|++||+++|||++...+-+.+.  .++.++..+|+...|+++..+|.|++||+....+...+.. ...
T Consensus        90 gF~~dgr-WMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~  168 (311)
T KOG0315|consen   90 GFQCDGR-WMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDT  168 (311)
T ss_pred             EEeecCe-EEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCc
Confidence            9999987 67799999999999999977766554  6799999999999999999999999999998877766543 456


Q ss_pred             CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC-
Q 003271          724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-  798 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~---~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~-  798 (835)
                      .|.++...|||.+++++. .|..++|++-+..   ....+..+..|...+..|.++|++++|++++.|.+++||++++. 
T Consensus       169 ~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~  248 (311)
T KOG0315|consen  169 SIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFF  248 (311)
T ss_pred             ceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCce
Confidence            899999999999999998 8899999997643   34567778899999999999999999999999999999999987 


Q ss_pred             cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          799 KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       799 ~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.. .+.+|...+++++||.||.||+||+.|+.+++|+
T Consensus       249 kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~  286 (311)
T KOG0315|consen  249 KLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWD  286 (311)
T ss_pred             eeEEEeecCCceEEeeeeccCccEEEecCCCCceeecc
Confidence            222 7789999999999999999999999999999997

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=3.4e-35  Score=307.79  Aligned_cols=275  Identities=21%  Similarity=0.438  Sum_probs=247.3

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      ...|..+.|.|+|+.|++|+..|.+.+|+..+......+..|..+|.++.|++++.++++|+.+|.|++|+..-..  ++
T Consensus        96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnn--Vk  173 (464)
T KOG0284|consen   96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNN--VK  173 (464)
T ss_pred             ccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchhh--hH
Confidence            4569999999999999999999999999997776667778999999999999999999999999999999987543  34


Q ss_pred             Eee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271          635 TFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       635 ~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~  710 (835)
                      .+. .|...|.+++|+|+. ..|++|++||+|+|||....+....+.++   +.++.|+|..+.|++++.|+.|++||.+
T Consensus       174 ~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDpr  252 (464)
T KOG0284|consen  174 IIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPR  252 (464)
T ss_pred             HhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCC
Confidence            444 455999999999964 57789999999999999988877777655   8999999999999999999999999999


Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCC
Q 003271          711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYE  788 (835)
Q Consensus       711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg  788 (835)
                      ++.|+.++.+|+..|..+.|++++++|++++ |..+++||+++.   +.+..+.+|...|+++.|+|-. ..|.+|+.||
T Consensus       253 Sg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~m---kEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dg  329 (464)
T KOG0284|consen  253 SGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTM---KELFTYRGHKKDVTSLTWHPLNESLFTSGGSDG  329 (464)
T ss_pred             CcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHh---HHHHHhhcchhhheeeccccccccceeeccCCC
Confidence            9999999999999999999999999999999 999999999976   7788889999999999999965 4667788899


Q ss_pred             eEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          789 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       789 ~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|..|.+...+.+  .-.+|...|++++|+|-|.+|++|+.|.++++|.
T Consensus       330 svvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  330 SVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             ceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            9999999855555  4458999999999999999999999999999994

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=5.8e-33  Score=279.25  Aligned_cols=272  Identities=16%  Similarity=0.262  Sum_probs=235.1

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ....+.+++.|..+-+|....+              +......++.+.||...|..++.++||.+.++++.|+++++||+
T Consensus        27 ~~~~l~sasrDk~ii~W~L~~d--------------d~~~G~~~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl   92 (315)
T KOG0279|consen   27 NSDILVSASRDKTIIVWKLTSD--------------DIKYGVPVRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDL   92 (315)
T ss_pred             CCceEEEcccceEEEEEEeccC--------------ccccCceeeeeeccceEecceEEccCCceEEeccccceEEEEEe
Confidence            3568899999999999944443              12223457888999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec--CCCCeEEEEEcCCC-CcEEEEEeC
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--HSTTVMSLDFHPSK-EDLLCSCDN  661 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~--h~~~V~sl~fsp~g-~~ll~sgs~  661 (835)
                      .+++....|.+|...|.+++|++|.+.+++|+.|.+|++|++...-  ..+...  +.+-|.|+.|+|+. +.+|++++.
T Consensus        93 ~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~c--k~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~  170 (315)
T KOG0279|consen   93 ATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVC--KYTIHEDSHREWVSCVRFSPNESNPIIVSASW  170 (315)
T ss_pred             cCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccE--EEEEecCCCcCcEEEEEEcCCCCCcEEEEccC
Confidence            9999999999999999999999999999999999999999998643  333332  37889999999985 668899999


Q ss_pred             CCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 003271          662 NSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA  738 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~La  738 (835)
                      |++|++||+++.+....+.++   ++.+.++|||..++.|+.||.+.+||++.++.+..+. |...|.+++|+|+...|+
T Consensus       171 DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~-a~~~v~sl~fspnrywL~  249 (315)
T KOG0279|consen  171 DKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLE-AFDIVNSLCFSPNRYWLC  249 (315)
T ss_pred             CceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEecc-CCCeEeeEEecCCceeEe
Confidence            999999999998888777654   8889999999999999999999999999999988776 889999999999999998


Q ss_pred             EEeCCeEEEEEcCCCCCcceEEEeec---------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          739 SVSDELVRVWSIGSGSKGECIHELSC---------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       739 sgsDg~I~IwDl~t~~~~~~i~~l~~---------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      .+.+..|+|||+.+.   .++.++..         ......+++|+++|..|+++-.|+.|++|.+.
T Consensus       250 ~at~~sIkIwdl~~~---~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  250 AATATSIKIWDLESK---AVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             eccCCceEEEeccch---hhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence            888888999999987   44444321         13345778999999999999999999999874

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=5.2e-33  Score=295.94  Aligned_cols=314  Identities=19%  Similarity=0.297  Sum_probs=269.1

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec----CCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP----ASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~----gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V  581 (835)
                      +.++++|+.|...++|...+.         .+.......++.-..+.    ..+..|++++|+.+|.+||+|..||.++|
T Consensus       191 ~~llasg~~~s~ari~~l~e~---------~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~ri  261 (524)
T KOG0273|consen  191 DGLLASGSGDSTARIWNLLEN---------SNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARI  261 (524)
T ss_pred             hhhhhccCCccceeeeeehhh---------ccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEE
Confidence            347889999999999944331         01111111111111111    23457999999999999999999999999


Q ss_pred             EEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (835)
Q Consensus       582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~  661 (835)
                      |+. ++..+.++..|.++|.++.|+.+|.||++++.|+++.+||..++.. ...+..|..+-..|.|-.+.  -|++++.
T Consensus       262 w~~-~G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~-~q~f~~~s~~~lDVdW~~~~--~F~ts~t  337 (524)
T KOG0273|consen  262 WNK-DGNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTV-KQQFEFHSAPALDVDWQSND--EFATSST  337 (524)
T ss_pred             Eec-CchhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceE-EEeeeeccCCccceEEecCc--eEeecCC
Confidence            996 5678889999999999999999999999999999999999998764 67788888887888998653  5779999


Q ss_pred             CCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC----
Q 003271          662 NSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG----  734 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg----  734 (835)
                      |+.|+++.+....++.++.+   .+.++.|+|.+..|++++.|++++||......+...+..|...|..+.|+|+|    
T Consensus       338 d~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~  417 (524)
T KOG0273|consen  338 DGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTS  417 (524)
T ss_pred             CceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccC
Confidence            99999999988888877764   48999999999999999999999999999999999999999999999999965    


Q ss_pred             -----CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCC
Q 003271          735 -----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK  808 (835)
Q Consensus       735 -----~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~  808 (835)
                           ..|++++ |++|++||+..+   .+++.+..|..+|++++|+|+++++++|+.||.|.||++.+++++....-.+
T Consensus       418 n~~~~~~l~sas~dstV~lwdv~~g---v~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  418 NPNMNLMLASASFDSTVKLWDVESG---VPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             CCcCCceEEEeecCCeEEEEEccCC---ceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCC
Confidence                 4677777 999999999998   8999999999999999999999999999999999999999999998888888


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          809 LVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       809 ~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|..++|+.+|.+|..+-.|+.|++-|
T Consensus       495 ~Ifel~Wn~~G~kl~~~~sd~~vcvld  521 (524)
T KOG0273|consen  495 GIFELCWNAAGDKLGACASDGSVCVLD  521 (524)
T ss_pred             eEEEEEEcCCCCEEEEEecCCCceEEE
Confidence            899999999999999999999998754

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=5.5e-32  Score=271.14  Aligned_cols=281  Identities=25%  Similarity=0.442  Sum_probs=240.6

Q ss_pred             eEEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCC---CeEEEEe-ccCCCCeEEEEECCCCCEEEEEECCC
Q 003271          545 FTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES---FTVKSTL-EEHTQWITDVRFSPSLSRLATSSADR  619 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t---~~~i~~l-~~h~~~V~sv~fspdg~~Latgs~Dg  619 (835)
                      +..++.+.+|.+.|..++|+|- |..||+|+.|+.|+||+...   ..+...+ .+|+..|.+|+|+|.|++|++||.|.
T Consensus         4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~   83 (312)
T KOG0645|consen    4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDA   83 (312)
T ss_pred             ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccc
Confidence            4567889999999999999998 88999999999999999884   4555555 47999999999999999999999999


Q ss_pred             eEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEeec---CceEEEEecCC
Q 003271          620 TVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKS---GATQMRFQPRL  692 (835)
Q Consensus       620 ~I~IWDl~t~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~---~~~~~~~~---~i~~l~fsp~~  692 (835)
                      ++.||.-..+. .++.++.+|...|.|++|+++|+ +|++|+.|+.|.||.+..+   ++...+..   .+..+.|+|..
T Consensus        84 t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~-~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~  162 (312)
T KOG0645|consen   84 TVVIWKKEDGEFECVATLEGHENEVKCVAWSASGN-YLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE  162 (312)
T ss_pred             eEEEeecCCCceeEEeeeeccccceeEEEEcCCCC-EEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc
Confidence            99999876554 35788999999999999999976 8889999999999999754   44555554   48889999999


Q ss_pred             CEEEEEEcCCcEEEEECC---CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271          693 GRILAAAIENYISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK  768 (835)
Q Consensus       693 ~~ll~~s~dg~I~IwDl~---t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~  768 (835)
                      +.|+++++|++|++|+-.   ...++.++.+|...|.+++|++.|..|++++ |++|+||...+.       .-..|...
T Consensus       163 dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~~~~sr~  235 (312)
T KOG0645|consen  163 DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LSGMHSRA  235 (312)
T ss_pred             ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC-------cchhcccc
Confidence            999999999999999876   4588999999999999999999999999999 999999986643       12236678


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc------EE--EeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 003271          769 FHSCVFHPTFPSLLVIGCYETLELWNMTENK------TL--TLSAHDKLVSSLAASTV-NGMVASASHDKCVKIWK  835 (835)
Q Consensus       769 V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~------~~--~l~~h~~~V~~la~spd-g~~LaSgs~DG~V~IWd  835 (835)
                      ++.+.|.  ...|++++.|+.|++|.....-      .+  ....|+..|+++.|.|. ..+|++|++||.|++|.
T Consensus       236 ~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~  309 (312)
T KOG0645|consen  236 LYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWE  309 (312)
T ss_pred             eEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEE
Confidence            9999998  4469999999999999766431      11  34579999999999995 67999999999999994

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=8.4e-34  Score=303.30  Aligned_cols=288  Identities=20%  Similarity=0.344  Sum_probs=251.8

Q ss_pred             EEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          546 TEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t-~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      ..+.++.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++++.+|..+|.+++|+.+|..|++++.|++|++
T Consensus       205 k~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKl  284 (503)
T KOG0282|consen  205 KLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKL  284 (503)
T ss_pred             hheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeee
Confidence            45788999999999999999 899999999999999999876 8999999999999999999999999999999999999


Q ss_pred             EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc
Q 003271          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~  700 (835)
                      ||++++.+ +..+. ....++|+.|+|++.+++++|+.|+.|+.||+++++.+..+.   +.+..+.|-+++.++++.+.
T Consensus       285 wDtETG~~-~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSD  362 (503)
T KOG0282|consen  285 WDTETGQV-LSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSD  362 (503)
T ss_pred             eccccceE-EEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeecc
Confidence            99999985 33333 345789999999998899999999999999999999887776   45888999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC--CceEEEEEeC
Q 003271          701 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHP  776 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~--~~V~sv~fsp  776 (835)
                      |+.++||+.+.+..+..+.. +.....||..+|++.++++-+ |+.|.||.+...-.......+.+|.  +.-..|.|+|
T Consensus       363 dks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSp  442 (503)
T KOG0282|consen  363 DKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSP  442 (503)
T ss_pred             CccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcC
Confidence            99999999998876654432 344567889999999999988 9999999976553333334455553  5567889999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  835 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg-~~LaSgs~DG~V~IWd  835 (835)
                      ||.+|++|+.+|.+.+||.++-+.+ .+.+|...+..+.|+|.. ..+|||+.||.|++||
T Consensus       443 DG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  443 DGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             CCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            9999999999999999999999888 888999999999999965 4899999999999997

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=9.6e-32  Score=299.19  Aligned_cols=310  Identities=21%  Similarity=0.310  Sum_probs=269.2

Q ss_pred             ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC-CeEE
Q 003271          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAV  580 (835)
Q Consensus       502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D-g~I~  580 (835)
                      +...-.++++|=..+...+|                   .-..+..++.+.-...+|..++|+..|.+||.|+.. |.+.
T Consensus       273 fH~~t~~lvvgFssG~f~Ly-------------------elP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLl  333 (893)
T KOG0291|consen  273 FHKGTNLLVVGFSSGEFGLY-------------------ELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLL  333 (893)
T ss_pred             ccCCceEEEEEecCCeeEEE-------------------ecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEE
Confidence            44455788888777777777                   233456778888888899999999999999998754 7999


Q ss_pred             EEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       581 VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                      ||+..+...+....+|...|++++++|||.+++||+.||.|+|||...+- |+.+|..|++.|+.+.|+..++ .+++.+
T Consensus       334 VweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sgf-C~vTFteHts~Vt~v~f~~~g~-~llssS  411 (893)
T KOG0291|consen  334 VWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGF-CFVTFTEHTSGVTAVQFTARGN-VLLSSS  411 (893)
T ss_pred             EEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCce-EEEEeccCCCceEEEEEEecCC-EEEEee
Confidence            99999999999999999999999999999999999999999999999765 6999999999999999999976 666888


Q ss_pred             CCCcEEEEECCCCeeeeEeecC----ceEEEEecCCCEEEEEEcCC-cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271          661 NNSEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGE  735 (835)
Q Consensus       661 ~Dg~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~  735 (835)
                      -||+|+.||+...++.+++..+    ..+++..|.|..+++|+.|. .|.+|++.+|+.+-.+.||.++|.+++|+|.+.
T Consensus       412 LDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~  491 (893)
T KOG0291|consen  412 LDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGS  491 (893)
T ss_pred             cCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccC
Confidence            9999999999999999998765    67899999999999999884 799999999999999999999999999999999


Q ss_pred             EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-E-----------
Q 003271          736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-----------  802 (835)
Q Consensus       736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~-----------  802 (835)
                      .|++++ |.+|++||+-...  ..+.+ -.+...+..++|+|+|+.|++++.||.|.+||...+..+ .           
T Consensus       492 ~LaS~SWDkTVRiW~if~s~--~~vEt-l~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR  568 (893)
T KOG0291|consen  492 LLASGSWDKTVRIWDIFSSS--GTVET-LEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGR  568 (893)
T ss_pred             eEEeccccceEEEEEeeccC--ceeee-EeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccc
Confidence            999999 9999999997652  12223 335678999999999999999999999999999765433 0           


Q ss_pred             ---------eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          803 ---------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       803 ---------l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                               -.+....++.|++++||++|++||....|+||+
T Consensus       569 ~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~  610 (893)
T KOG0291|consen  569 KETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYD  610 (893)
T ss_pred             cccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEE
Confidence                     112246789999999999999999999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-33  Score=291.78  Aligned_cols=288  Identities=20%  Similarity=0.327  Sum_probs=245.2

Q ss_pred             CceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271          542 GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (835)
Q Consensus       542 g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t---~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D  618 (835)
                      ..+..+..++..|++.|+-+.||++|+|||+++.|.+..+|.+..   .+..+++.+|..+|..|.|+||.++|++|+.|
T Consensus       211 qip~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~  290 (519)
T KOG0293|consen  211 QIPSQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFD  290 (519)
T ss_pred             cCCchhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCch
Confidence            456677889999999999999999999999999999999998753   45678999999999999999999999999999


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCE
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGR  694 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~  694 (835)
                      ..+.+||+.++......-.+|...+.+++|.|||.. +++|+.|+.|..||+... ......    ..+.++++.+||.+
T Consensus       291 e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~  368 (519)
T KOG0293|consen  291 EVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFR-FVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKY  368 (519)
T ss_pred             HheeeccCCcchhhhhcccCcCCCcceeEEccCCce-eEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcE
Confidence            999999999988644444456688999999999875 568999999999999843 333332    33889999999999


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc--eEE
Q 003271          695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK--FHS  771 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~--V~s  771 (835)
                      +++.+.|..|++|+.++...+..+. ...+|++++.+.+++++++.- +..|.+||+...   +.+..+.+|...  +..
T Consensus       369 vl~v~~d~~i~l~~~e~~~dr~lis-e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~---~lv~kY~Ghkq~~fiIr  444 (519)
T KOG0293|consen  369 VLLVTVDKKIRLYNREARVDRGLIS-EEQPITSFSISKDGKLALVNLQDQEIHLWDLEEN---KLVRKYFGHKQGHFIIR  444 (519)
T ss_pred             EEEEecccceeeechhhhhhhcccc-ccCceeEEEEcCCCcEEEEEcccCeeEEeecchh---hHHHHhhcccccceEEE
Confidence            9999999999999999876665444 467899999999999988877 899999999865   666677776543  333


Q ss_pred             EEEe-CCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003271          772 CVFH-PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  835 (835)
Q Consensus       772 v~fs-pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg-~~LaSgs~DG~V~IWd  835 (835)
                      -+|- .+..++++|+.|+.|+||+..+++++ .+.+|...|+|++|+|.. .++|+|++||+|+||.
T Consensus       445 SCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg  511 (519)
T KOG0293|consen  445 SCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWG  511 (519)
T ss_pred             eccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEec
Confidence            3454 45589999999999999999999988 889999999999999965 5899999999999994

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-31  Score=294.90  Aligned_cols=314  Identities=20%  Similarity=0.334  Sum_probs=255.0

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      ++++.| ....+.+|-.+.....           .-.+|...+++.+|.+.|+++.|+.|.++|++|+.|..++||+++.
T Consensus       109 ~~fav~-~gn~lqiw~~P~~~~~-----------~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~  176 (893)
T KOG0291|consen  109 KFFAVG-CGNLLQIWHAPGEIKN-----------EFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDG  176 (893)
T ss_pred             cEEEEE-ecceeEEEecCcchhc-----------ccCcceEeeeecCCccceeEEEeccCCceEEeccccceEEEEEecc
Confidence            677766 4477888844433211           2346777889999999999999999999999999999999999987


Q ss_pred             CeE--EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC-----------------------CCc-----ee---
Q 003271          587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----------------------PDY-----SL---  633 (835)
Q Consensus       587 ~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t-----------------------~~~-----~~---  633 (835)
                      .+-  ...+.+|.+.|.++-|..+...++|.+.||.+.+|....                       ++.     ..   
T Consensus       177 ~k~~~~~~l~gHkd~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~  256 (893)
T KOG0291|consen  177 NKNLFTYALNGHKDYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKT  256 (893)
T ss_pred             ccccceEeccCCCcceEEEEeccCcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEE
Confidence            665  577889999999999999999999999999999998761                       000     00   


Q ss_pred             --EEeecCCCC------------------------------------------eEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271          634 --RTFTGHSTT------------------------------------------VMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (835)
Q Consensus       634 --~~~~~h~~~------------------------------------------V~sl~fsp~g~~ll~sgs~Dg~I~iwD  669 (835)
                        ..+......                                          |..+.|+..|+.+.+.|+.-|.+.||+
T Consensus       257 ~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVwe  336 (893)
T KOG0291|consen  257 KKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWE  336 (893)
T ss_pred             EeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEE
Confidence              001111133                                          444444445555555555556666777


Q ss_pred             CCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeE
Q 003271          670 INNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELV  745 (835)
Q Consensus       670 l~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I  745 (835)
                      ..+..-+....   ..+.+++++|||..+++|+.||.|+|||..++-|+.+|..|.+.|+.++|+..|+.+++.+ ||+|
T Consensus       337 WqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtV  416 (893)
T KOG0291|consen  337 WQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTV  416 (893)
T ss_pred             eeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeE
Confidence            66655544444   3488999999999999999999999999999999999999999999999999999999999 9999


Q ss_pred             EEEEcCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEE
Q 003271          746 RVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV  822 (835)
Q Consensus       746 ~IwDl~t~~~~~~i~~l~~~~-~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~L  822 (835)
                      +.||+...   .+.+++.... ....+++..|.|..+++|+.|. .|+||++.+|+++ .+.+|+++|.+++|+|++..|
T Consensus       417 RAwDlkRY---rNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~L  493 (893)
T KOG0291|consen  417 RAWDLKRY---RNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLL  493 (893)
T ss_pred             Eeeeeccc---ceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeE
Confidence            99999877   6777776543 4568889999999888888888 8999999999999 788999999999999999999


Q ss_pred             EEEECCCcEEEeC
Q 003271          823 ASASHDKCVKIWK  835 (835)
Q Consensus       823 aSgs~DG~V~IWd  835 (835)
                      ++++.|.+|++||
T Consensus       494 aS~SWDkTVRiW~  506 (893)
T KOG0291|consen  494 ASGSWDKTVRIWD  506 (893)
T ss_pred             EeccccceEEEEE
Confidence            9999999999997

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=9.6e-32  Score=278.93  Aligned_cols=326  Identities=16%  Similarity=0.199  Sum_probs=275.5

Q ss_pred             CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE
Q 003271          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (835)
Q Consensus       481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s  560 (835)
                      +.+.+.|.....   .+-..++.+..+++++|+-|+..-+|....+                   .....+.+|++.|+|
T Consensus        54 DdS~~tF~~H~~---svFavsl~P~~~l~aTGGgDD~AflW~~~~g-------------------e~~~eltgHKDSVt~  111 (399)
T KOG0296|consen   54 DDSLVTFDKHTD---SVFAVSLHPNNNLVATGGGDDLAFLWDISTG-------------------EFAGELTGHKDSVTC  111 (399)
T ss_pred             ccceeehhhcCC---ceEEEEeCCCCceEEecCCCceEEEEEccCC-------------------cceeEecCCCCceEE
Confidence            334444444333   2334445567899999999999999944433                   135667899999999


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~  640 (835)
                      +.|+.||.+||||+.+|.|+||...++.....+...-+.|.-+.|+|.+.+|+.|+.||.|.+|.+.+.. ..+.+.+|.
T Consensus       112 ~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~-~~kv~~Gh~  190 (399)
T KOG0296|consen  112 CSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQA-LCKVMSGHN  190 (399)
T ss_pred             EEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcc-eeeEecCCC
Confidence            9999999999999999999999999999998887667788899999999999999999999999999864 478999999


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE
Q 003271          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  716 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~  716 (835)
                      .++++-.|.|+|++ ++++..||+|++||+.++..+..+.    ....++.++..+..++.|..++.+++....+++.+.
T Consensus       191 ~~ct~G~f~pdGKr-~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~  269 (399)
T KOG0296|consen  191 SPCTCGEFIPDGKR-ILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN  269 (399)
T ss_pred             CCcccccccCCCce-EEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence            99999999999884 5589999999999999999888776    347888899999999999999999999999998887


Q ss_pred             EEc--------CCCCCeEEEEE---cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271          717 KLQ--------GHKNQVHSVCW---NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       717 ~l~--------~h~~~I~sl~f---spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg  784 (835)
                      ...        .+...+.||.+   +..=.+.++|+ ||+|.|||+...    .++..-.|...|..+.|.+ ..+|+++
T Consensus       270 ~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~----~~R~~c~he~~V~~l~w~~-t~~l~t~  344 (399)
T KOG0296|consen  270 CNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAS----TLRHICEHEDGVTKLKWLN-TDYLLTA  344 (399)
T ss_pred             ecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccc----hhheeccCCCceEEEEEcC-cchheee
Confidence            766        34444555554   44556777888 999999999875    3444556788899999999 7899999


Q ss_pred             EcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          785 GCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       785 s~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.+|.|++||.++|.++ .+.+|...|.+++++|+.++++|++.|++.+||+
T Consensus       345 c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  345 CANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             ccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            99999999999999988 8889999999999999999999999999999985

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.4e-31  Score=270.55  Aligned_cols=275  Identities=24%  Similarity=0.389  Sum_probs=245.6

Q ss_pred             CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE
Q 003271          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (835)
Q Consensus       481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s  560 (835)
                      ....+.|++++               +.++++|.|+.+-+|+                   .++-.++..++-...-|..
T Consensus        57 Ki~~~~ws~Ds---------------r~ivSaSqDGklIvWD-------------------s~TtnK~haipl~s~WVMt  102 (343)
T KOG0286|consen   57 KIYAMDWSTDS---------------RRIVSASQDGKLIVWD-------------------SFTTNKVHAIPLPSSWVMT  102 (343)
T ss_pred             ceeeeEecCCc---------------CeEEeeccCCeEEEEE-------------------cccccceeEEecCceeEEE
Confidence            45667777766               7899999999999993                   3344556777778888999


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCC------eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~------~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      |+|+|.|+++|+|+-|+...||++.+.      ...+.+.+|++.+.|+.|.+| ..|+|+|.|.++.+||++++.. +.
T Consensus       103 CA~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g~~-~~  180 (343)
T KOG0286|consen  103 CAYSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETGQQ-TQ  180 (343)
T ss_pred             EEECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccceE-EE
Confidence            999999999999999999999999854      455778999999999999975 5899999999999999999875 88


Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVET  711 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t  711 (835)
                      .|.+|.+.|.++++.|...+.+++|+-|+..++||++.+.++..|.++   |..++|.|+|..|++|+.|+..++||++.
T Consensus       181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRa  260 (343)
T KOG0286|consen  181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRA  260 (343)
T ss_pred             EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecC
Confidence            999999999999999955567889999999999999999999998754   99999999999999999999999999999


Q ss_pred             CeEEEEEcC--CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271          712 QVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE  788 (835)
Q Consensus       712 ~~~i~~l~~--h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg  788 (835)
                      ...+..+..  ...+|++++|+..|++|++|. |.++.|||.-.+   +.+..+.+|++.|.++..+|||.-+++|+.|.
T Consensus       261 D~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~---e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs  337 (343)
T KOG0286|consen  261 DQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKG---ERVGVLAGHENRVSCLGVSPDGMAVATGSWDS  337 (343)
T ss_pred             CcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeecccc---ceEEEeeccCCeeEEEEECCCCcEEEecchhH
Confidence            888877763  345899999999999999988 899999999887   78889999999999999999999999999999


Q ss_pred             eEEEEE
Q 003271          789 TLELWN  794 (835)
Q Consensus       789 ~I~IwD  794 (835)
                      .|+||.
T Consensus       338 ~lriW~  343 (343)
T KOG0286|consen  338 TLRIWA  343 (343)
T ss_pred             heeecC
Confidence            999994

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=2.7e-32  Score=290.56  Aligned_cols=280  Identities=25%  Similarity=0.442  Sum_probs=245.2

Q ss_pred             EEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCC--CeEE--EEec----------cCCCCeEEEEECCCCCEE
Q 003271          548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTES--FTVK--STLE----------EHTQWITDVRFSPSLSRL  612 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t--~~~i--~~l~----------~h~~~V~sv~fspdg~~L  612 (835)
                      ++.++ |..+|.+++|+|-.. +|++|+.|-..++|++..  ....  ..++          ..+..|++++|+.+|..|
T Consensus       172 ~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~L  250 (524)
T KOG0273|consen  172 AKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLL  250 (524)
T ss_pred             eeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeE
Confidence            45555 999999999999665 899999999999999864  1111  1111          123579999999999999


Q ss_pred             EEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEe
Q 003271          613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQ  689 (835)
Q Consensus       613 atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fs  689 (835)
                      |+|++||.++||+....  .+.++..|.++|.++.|+.+|. +|++++.|+++.+||..++.....+...   ...+.|-
T Consensus       251 atG~~~G~~riw~~~G~--l~~tl~~HkgPI~slKWnk~G~-yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~  327 (524)
T KOG0273|consen  251 ATGSEDGEARIWNKDGN--LISTLGQHKGPIFSLKWNKKGT-YILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQ  327 (524)
T ss_pred             EEeecCcEEEEEecCch--hhhhhhccCCceEEEEEcCCCC-EEEeccCCccEEEEeccCceEEEeeeeccCCccceEEe
Confidence            99999999999998854  3788999999999999999987 5559999999999999999887766533   3557776


Q ss_pred             cCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271          690 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK  768 (835)
Q Consensus       690 p~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~  768 (835)
                      .+ ..+++.+.|+.|+|+-+....++.++.+|.++|.++.|+|.|.+|++++ |++++||.....   .+++.+..|...
T Consensus       328 ~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~---~~~~~l~~Hske  403 (524)
T KOG0273|consen  328 SN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQS---NSVHDLQAHSKE  403 (524)
T ss_pred             cC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCC---cchhhhhhhccc
Confidence            65 6788999999999999999999999999999999999999999999999 999999998777   788899999999


Q ss_pred             eEEEEEeCCCC---------EEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          769 FHSCVFHPTFP---------SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       769 V~sv~fspdg~---------~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |..+.|+|+++         .|++++.|++|++||+..+.++ .+..|..+|.+++|+|+|+++|+|+.||.|+||+
T Consensus       404 i~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws  480 (524)
T KOG0273|consen  404 IYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWS  480 (524)
T ss_pred             eeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEecc
Confidence            99999999764         5899999999999999999988 7779999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=6.3e-32  Score=304.25  Aligned_cols=274  Identities=23%  Similarity=0.383  Sum_probs=238.1

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-------------------------------eEEEEecc
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-------------------------------TVKSTLEE  595 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-------------------------------~~i~~l~~  595 (835)
                      .+.++......|+|+.|++|+.+||.|..|..|++|.+...                               ....++.+
T Consensus       370 c~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~G  449 (707)
T KOG0263|consen  370 CMYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYG  449 (707)
T ss_pred             EEEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeec
Confidence            34444455567999999999999999999999999987521                               12345678


Q ss_pred             CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 003271          596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (835)
Q Consensus       596 h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~  675 (835)
                      |.++|..+.|+|+.++|+++|.|++||+|.+.+... +..+.+|..+|+++.|+|.| ++|++++.|++-++|.......
T Consensus       450 H~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~-~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~P  527 (707)
T KOG0263|consen  450 HSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSC-LVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNKP  527 (707)
T ss_pred             CCCceeeeeecccccceeeccCCcceeeeeccccee-EEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCCc
Confidence            999999999999999999999999999999998764 77888999999999999996 5888999999999999999888


Q ss_pred             eeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003271          676 AGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG  751 (835)
Q Consensus       676 ~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~  751 (835)
                      .+.+-++   +.|+.|+|+..++++|+.|.+|++||+.++..++.|.||..+|.+++|+|+|++|++|+ |+.|+|||+.
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~  607 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLA  607 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence            8887654   88999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE------------------------E-EeccC
Q 003271          752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT------------------------L-TLSAH  806 (835)
Q Consensus       752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~------------------------~-~l~~h  806 (835)
                      ++   ..+..+.+|.+.|.++.|+.+|..|++++.|.+|++||+..-..                        + .+..-
T Consensus       608 ~~---~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs~~tK  684 (707)
T KOG0263|consen  608 NG---SLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGSFYTK  684 (707)
T ss_pred             CC---cchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeeeeeec
Confidence            98   78888899999999999999999999999999999999853221                        1 23334


Q ss_pred             CCCeeEEEEeCCCCEEEEE
Q 003271          807 DKLVSSLAASTVNGMVASA  825 (835)
Q Consensus       807 ~~~V~~la~spdg~~LaSg  825 (835)
                      ..+|.++.|....-.|+.|
T Consensus       685 ~tpv~~l~FtrrNl~L~~g  703 (707)
T KOG0263|consen  685 NTPVVGLHFTRRNLLLAVG  703 (707)
T ss_pred             CceEEEEEEeccceeEEec
Confidence            4578888887765444444

>PLN00181 protein SPA1-RELATED; Provisional

Probab=100.00  E-value=2.4e-30  Score=317.63  Aligned_cols=282  Identities=18%  Similarity=0.284  Sum_probs=238.1

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC----e----EEEEeccCCCCeEEEEECCC-CCEEEEEECCCeE
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----T----VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTV  621 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~----~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I  621 (835)
                      +..|.+.|++++|+++|++||+|+.|++|+||++...    .    ....+. +...|.+++|++. +.+|++++.||+|
T Consensus       479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v  557 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV  557 (793)
T ss_pred             ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence            4569999999999999999999999999999997532    1    122333 3467999999874 7899999999999


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEe-cCCCEEEEE
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQ-PRLGRILAA  698 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fs-p~~~~ll~~  698 (835)
                      +|||+.++. .+..+.+|...|++++|+|....+|++|+.|+.|++||++++.++..+..  .+.++.|. +++..+++|
T Consensus       558 ~lWd~~~~~-~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latg  636 (793)
T PLN00181        558 QVWDVARSQ-LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFG  636 (793)
T ss_pred             EEEECCCCe-EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEE
Confidence            999999765 47788899999999999985556888999999999999999888777653  47788885 568899999


Q ss_pred             EcCCcEEEEECCCCe-EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---CcceEEEeecCCCceEEEE
Q 003271          699 AIENYISILDVETQV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---KGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       699 s~dg~I~IwDl~t~~-~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~---~~~~i~~l~~~~~~V~sv~  773 (835)
                      +.|+.|++||+++.. .+..+.+|...|.++.|. ++.+|++++ |+.|+|||++...   ...++..+.+|...+.+++
T Consensus       637 s~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        637 SADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             eCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence            999999999998765 567788899999999997 677888888 9999999997532   2356788899999999999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEEcCCCcEE--------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          774 FHPTFPSLLVIGCYETLELWNMTENKTL--------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       774 fspdg~~L~sgs~dg~I~IwDl~~~~~~--------------~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |++++.+|++|+.|+.|++|+......+              ....|...|.+++|++++.+|++|+.||.|+||+
T Consensus       716 ~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~~  791 (793)
T PLN00181        716 LSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKILE  791 (793)
T ss_pred             EcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEEe
Confidence            9999999999999999999998655322              1234556799999999999999999999999996

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.6e-31  Score=291.87  Aligned_cols=288  Identities=21%  Similarity=0.324  Sum_probs=259.9

Q ss_pred             eeEEEEEecCCCCCEEEEEE-eCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271          544 TFTEFQLIPASTSKVESCHF-SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  622 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~f-Spdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~  622 (835)
                      ++...+.+-|..+.|.+|+| .|+..+||+++..+.+++|++.+..+. .+.+|++.|.++....+|-+|+||+.|.+|+
T Consensus       312 ~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~~~g~llat~sKD~svi  390 (775)
T KOG0319|consen  312 ELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVWSSGDLLATGSKDKSVI  390 (775)
T ss_pred             ccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeecccCcEEEEecCCceEE
Confidence            34556677788999999997 457789999999999999999887766 7889999999999666778999999999999


Q ss_pred             EEecCCCC---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---e---------EeecCceEEE
Q 003271          623 VWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---G---------VFKSGATQMR  687 (835)
Q Consensus       623 IWDl~t~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~---------~~~~~i~~l~  687 (835)
                      +|.++++.   .++....+|...|.+++++..+..+|++++.|++|++|++...+..   .         .+...+.+++
T Consensus       391 lWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Va  470 (775)
T KOG0319|consen  391 LWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVA  470 (775)
T ss_pred             EEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceE
Confidence            99885432   2456678999999999999988999999999999999999863221   1         1224599999


Q ss_pred             EecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC
Q 003271          688 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG  766 (835)
Q Consensus       688 fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~  766 (835)
                      ++|++..+++|+.|.+.+||+++.......+.+|...|.||.|++....+++++ |++|+||.+.+.   .|+.++.+|.
T Consensus       471 ia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~f---SClkT~eGH~  547 (775)
T KOG0319|consen  471 IAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTF---SCLKTFEGHT  547 (775)
T ss_pred             ecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccc---eeeeeecCcc
Confidence            999999999999999999999999999999999999999999999999999999 999999999998   8999999999


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          767 NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       767 ~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..|..+.|-.++..|++++.||-|+||++++++|+ .+..|.+.|++++.++...+++||+.||.|.+|+
T Consensus       548 ~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wk  617 (775)
T KOG0319|consen  548 SAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWK  617 (775)
T ss_pred             ceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEee
Confidence            99999999999999999999999999999999998 8899999999999999999999999999999995

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=2.5e-31  Score=299.42  Aligned_cols=252  Identities=24%  Similarity=0.433  Sum_probs=220.1

Q ss_pred             ccCccccCCCcEEEeccCCCCEEEeecCCCC--------C-------CCcccccccccCCCceeEEEEEecCCCCCEEEE
Q 003271          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDA--------D-------PRDRVGRSAEVGKGFTFTEFQLIPASTSKVESC  561 (835)
Q Consensus       497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~--------~-------~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl  561 (835)
                      +....+.+...++|.|-.|..|++|-.....        .       ..+......+..   .-...+.+.||.++|+.+
T Consensus       381 v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~---~~~~~~~L~GH~GPVyg~  457 (707)
T KOG0263|consen  381 VTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDD---SSGTSRTLYGHSGPVYGC  457 (707)
T ss_pred             ceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhcccc---CCceeEEeecCCCceeee
Confidence            4455566667799999999999999444211        0       011112222222   223455588999999999


Q ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCC
Q 003271          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST  641 (835)
Q Consensus       562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~  641 (835)
                      .|+|+.++|++++.|++|++|++.+..++..+++|..+|+++.|+|.|-+|||++.|++.++|..+.. .+++.+.+|-+
T Consensus       458 sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~-~PlRifaghls  536 (707)
T KOG0263|consen  458 SFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN-KPLRIFAGHLS  536 (707)
T ss_pred             eecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccC-Cchhhhccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999974 46999999999


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  718 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l  718 (835)
                      .|.|+.|+|+.. ++++|+.|.+|++||+.+|..++.|.++   +.+++|+|+|.+|++|+.|+.|.+||+.+++.+..+
T Consensus       537 DV~cv~FHPNs~-Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l  615 (707)
T KOG0263|consen  537 DVDCVSFHPNSN-YVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQL  615 (707)
T ss_pred             ccceEEECCccc-ccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhh
Confidence            999999999965 7789999999999999999999999755   899999999999999999999999999999999999


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271          719 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  753 (835)
Q Consensus       719 ~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~  753 (835)
                      .+|.+.|.++.|+.+|..|++++ |++|++||+...
T Consensus       616 ~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  616 KGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             hcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999999999999999999 999999998754

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.98  E-value=1.5e-30  Score=290.00  Aligned_cols=317  Identities=19%  Similarity=0.274  Sum_probs=264.2

Q ss_pred             cccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC--EEEEE
Q 003271          496 TSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK--LLATG  573 (835)
Q Consensus       496 ~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~--~Lasg  573 (835)
                      ++...++++...++++|+.|+.+++|.....                   .....++||.+.|.++.|.|+-.  +|++|
T Consensus       107 Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~-------------------~~th~fkG~gGvVssl~F~~~~~~~lL~sg  167 (775)
T KOG0319|consen  107 PVITMAFDPTGTLLATGGADGRVKVWDIKNG-------------------YCTHSFKGHGGVVSSLLFHPHWNRWLLASG  167 (775)
T ss_pred             CeEEEEEcCCCceEEeccccceEEEEEeeCC-------------------EEEEEecCCCceEEEEEeCCccchhheeec
Confidence            3345556677789999999999999944333                   45788999999999999999765  48999


Q ss_pred             eCCCeEEEEEcCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC----------------------
Q 003271          574 GHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD----------------------  630 (835)
Q Consensus       574 s~Dg~I~VWd~~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~----------------------  630 (835)
                      ..|+.|++||+.+... +.++..|...|++++|++|+..+++++.|..|.|||+.+.+                      
T Consensus       168 ~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~  247 (775)
T KOG0319|consen  168 ATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELG  247 (775)
T ss_pred             CCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcC
Confidence            9999999999985544 77788999999999999999999999999999999873111                      


Q ss_pred             --------------------------------------------------------------------------------
Q 003271          631 --------------------------------------------------------------------------------  630 (835)
Q Consensus       631 --------------------------------------------------------------------------------  630 (835)
                                                                                                      
T Consensus       248 ~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~  327 (775)
T KOG0319|consen  248 GKGEYIITAGGSGVVQYWDSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEIL  327 (775)
T ss_pred             CcceEEEEecCCceEEEEecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhhe
Confidence                                                                                            


Q ss_pred             ------------------c----------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----e-
Q 003271          631 ------------------Y----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----G-  677 (835)
Q Consensus       631 ------------------~----------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~----~-  677 (835)
                                        .          ....+.+|...|.+++...+| .+|++|+.|.++++|.++++.+.    . 
T Consensus       328 Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~ii~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~~~~a~  406 (775)
T KOG0319|consen  328 DMKFLGPEESHLAVATNSPELRLYTLPTSYCQIIPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKSLCVAQ  406 (775)
T ss_pred             eeeecCCccceEEEEeCCCceEEEecCCCceEEEeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchhhhhhh
Confidence                              0          011345688888888855554 58999999999999988544322    1 


Q ss_pred             --EeecCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeE-----EE----EEcCCCCCeEEEEEcCCCCEEEEEe-CCe
Q 003271          678 --VFKSGATQMRFQPRL-GRILAAAIENYISILDVETQVC-----RL----KLQGHKNQVHSVCWNTSGEYLASVS-DEL  744 (835)
Q Consensus       678 --~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~-----i~----~l~~h~~~I~sl~fspdg~~Lasgs-Dg~  744 (835)
                        .+...+.+++++..+ ..|++++.|.++++|++...+.     +.    ....|...|.|++++|+..+|++|+ |.+
T Consensus       407 ~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDkt  486 (775)
T KOG0319|consen  407 ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKT  486 (775)
T ss_pred             hcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccc
Confidence              223457888886655 5677899999999999986211     11    2345999999999999999999999 999


Q ss_pred             EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003271          745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA  823 (835)
Q Consensus       745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~La  823 (835)
                      .+||++...   ....++.+|...|+++.|++....+++++.|.+|+||.+.+..++ ++.+|...|..+.|-.+++.|+
T Consensus       487 aKiW~le~~---~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qli  563 (775)
T KOG0319|consen  487 AKIWDLEQL---RLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLI  563 (775)
T ss_pred             eeeecccCc---eEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEE
Confidence            999999966   889999999999999999999999999999999999999999999 7889999999999999999999


Q ss_pred             EEECCCcEEEeC
Q 003271          824 SASHDKCVKIWK  835 (835)
Q Consensus       824 Sgs~DG~V~IWd  835 (835)
                      +|+.||-|+||+
T Consensus       564 S~~adGliKlWn  575 (775)
T KOG0319|consen  564 SAGADGLIKLWN  575 (775)
T ss_pred             eccCCCcEEEEe
Confidence            999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=99.98  E-value=6e-32  Score=283.45  Aligned_cols=276  Identities=23%  Similarity=0.423  Sum_probs=237.0

Q ss_pred             CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE
Q 003271          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (835)
Q Consensus       481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s  560 (835)
                      ....+.|.+++               +.|.+|+..+.+.+|                   .+..|.-..++.+|..+|.+
T Consensus        98 ~V~~v~WtPeG---------------RRLltgs~SGEFtLW-------------------Ng~~fnFEtilQaHDs~Vr~  143 (464)
T KOG0284|consen   98 PVNVVRWTPEG---------------RRLLTGSQSGEFTLW-------------------NGTSFNFETILQAHDSPVRT  143 (464)
T ss_pred             ceeeEEEcCCC---------------ceeEeecccccEEEe-------------------cCceeeHHHHhhhhccccee
Confidence            34566777766               788999999999999                   34555556678899999999


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h  639 (835)
                      +.|+++|.++++|+.+|.|++|+..-. .++.+.. |...|++++|+|+...|++++.||+|+|||....+. .+.+.+|
T Consensus       144 m~ws~~g~wmiSgD~gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke-e~vL~GH  221 (464)
T KOG0284|consen  144 MKWSHNGTWMISGDKGGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE-ERVLRGH  221 (464)
T ss_pred             EEEccCCCEEEEcCCCceEEecccchh-hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch-hheeccC
Confidence            999999999999999999999997543 3444444 558999999999999999999999999999987664 6778999


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE
Q 003271          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  716 (835)
Q Consensus       640 ~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~  716 (835)
                      .-.|.+++|+|.. .+|++++.|..|++||.+++.|+.++.   ..|..+.|++++++|++++.|..+++||+++.+.+.
T Consensus       222 gwdVksvdWHP~k-gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~  300 (464)
T KOG0284|consen  222 GWDVKSVDWHPTK-GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELF  300 (464)
T ss_pred             CCCcceeccCCcc-ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHH
Confidence            9999999999995 488899999999999999999987654   458899999999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          717 KLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       717 ~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      .+.+|...|+++.|+|-. .+|++|+ ||.|..|.+...+  .....-..|...|++++|+|-|..|++|+.|.++++|.
T Consensus       301 ~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~--p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  301 TYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE--PLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             HhhcchhhheeeccccccccceeeccCCCceEEEeccccc--cccCCCcccccceeeeeccccceeEeecCCCcceeeec
Confidence            999999999999999965 4556666 9999999998442  22223346889999999999999999999999999997


Q ss_pred             c
Q 003271          795 M  795 (835)
Q Consensus       795 l  795 (835)
                      -
T Consensus       379 r  379 (464)
T KOG0284|consen  379 R  379 (464)
T ss_pred             c
Confidence            4

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=8.4e-32  Score=276.48  Aligned_cols=269  Identities=22%  Similarity=0.387  Sum_probs=233.5

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      +..-......|+|+.+.  ...+++|..|.+|+|||..+..+...+.+|++.|.|+.|.  .+.|++|+.|.+|+|||+.
T Consensus       190 inc~Se~skgVYClQYD--D~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~  265 (499)
T KOG0281|consen  190 INCRSENSKGVYCLQYD--DEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN  265 (499)
T ss_pred             ecCCcccCCceEEEEec--chhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence            33334456779999995  4579999999999999999999999999999999999994  5699999999999999999


Q ss_pred             CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEee---cCceEEEEecCCCEEEEEEcC
Q 003271          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK---SGATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~~~~---~~i~~l~fsp~~~~ll~~s~d  701 (835)
                      +++. +.++.+|...|..+.|+.   .++++|+.|.+|.+||+.....+   +.+.   ..+..+.|+  .+++++++.|
T Consensus       266 tge~-l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgD  339 (499)
T KOG0281|consen  266 TGEP-LNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGD  339 (499)
T ss_pred             CCch-hhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCC
Confidence            9874 889999999999999984   48889999999999999876532   2232   336666665  4599999999


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271          702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~  780 (835)
                      .+|++|++.+.+++.++.+|...|-|+.+  .|+++++|+ |.+|++||+..+   .|+..+.+|..-|.++.|.  .+.
T Consensus       340 RTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G---~cLRvLeGHEeLvRciRFd--~kr  412 (499)
T KOG0281|consen  340 RTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRFD--NKR  412 (499)
T ss_pred             ceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEecccc---HHHHHHhchHHhhhheeec--Cce
Confidence            99999999999999999999999998886  589999999 999999999998   8999999999999999994  557


Q ss_pred             EEEEEcCCeEEEEEcCCCc---------EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          781 LLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       781 L~sgs~dg~I~IwDl~~~~---------~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |++|+.||+|+|||+..+.         ++ .+..|.+.|..+.|.  ...|++++.|.+|.|||
T Consensus       413 IVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWd  475 (499)
T KOG0281|consen  413 IVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWD  475 (499)
T ss_pred             eeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEE
Confidence            9999999999999997654         22 567899999999985  56799999999999997

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=1.2e-30  Score=270.55  Aligned_cols=277  Identities=24%  Similarity=0.436  Sum_probs=247.2

Q ss_pred             ccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe
Q 003271          495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (835)
Q Consensus       495 ~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs  574 (835)
                      .++..+.+.+...++++++.|.+|++|+...+                   ...+.++||++.|.+|+|+..|++||+++
T Consensus       109 ~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg-------------------~~e~~LrGHt~sv~di~~~a~Gk~l~tcS  169 (406)
T KOG0295|consen  109 SSVTRVIFHPSEALVVSASEDATIKVFDTETG-------------------ELERSLRGHTDSVFDISFDASGKYLATCS  169 (406)
T ss_pred             cceeeeeeccCceEEEEecCCceEEEEEccch-------------------hhhhhhhccccceeEEEEecCccEEEecC
Confidence            34445556667788999999999999944332                   33667899999999999999999999999


Q ss_pred             CCCeEEEEEcCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          575 HDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       575 ~Dg~I~VWd~~t-~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      .|-.+.+||.++ .++++.+.+|...|.+++|-|.|.+|++++.|.+|+.|++.++. ++.++.+|..-|..+..+.||.
T Consensus       170 sDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~-cv~t~~~h~ewvr~v~v~~DGt  248 (406)
T KOG0295|consen  170 SDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGY-CVKTFPGHSEWVRMVRVNQDGT  248 (406)
T ss_pred             CccchhheeHHHHHHHHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccce-eEEeccCchHhEEEEEecCCee
Confidence            999999999987 67788888999999999999999999999999999999999875 6999999999999999999975


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeee---EeecCceEEEEecCC---------------CEEEEEEcCCcEEEEECCCCeEE
Q 003271          654 DLLCSCDNNSEIRYWSINNGSCAG---VFKSGATQMRFQPRL---------------GRILAAAIENYISILDVETQVCR  715 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s~~~~~---~~~~~i~~l~fsp~~---------------~~ll~~s~dg~I~IwDl~t~~~i  715 (835)
                       ++++|+.|.+|++|-+.++.|..   .+...+.+++|-|..               ..+.+++.|++|++||+.++.++
T Consensus       249 -i~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL  327 (406)
T KOG0295|consen  249 -IIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL  327 (406)
T ss_pred             -EEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE
Confidence             99999999999999999986544   444557788876641               37888999999999999999999


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          716 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      .++.+|.+.|..++|+|.|+||+++. |++++|||+++.   .|.+.+..|..-++++.|+.+.+++++|+-|-++++|.
T Consensus       328 ~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~---~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  328 FTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNL---QCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             EEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccc---eeeeccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence            99999999999999999999999999 889999999998   89999999999999999999999999999999999997


Q ss_pred             c
Q 003271          795 M  795 (835)
Q Consensus       795 l  795 (835)
                      .
T Consensus       405 c  405 (406)
T KOG0295|consen  405 C  405 (406)
T ss_pred             c
Confidence            4

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=8.6e-30  Score=250.44  Aligned_cols=279  Identities=18%  Similarity=0.337  Sum_probs=241.2

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      .+.+.+..|.++|.++.|+-||+|.++++.|.+|++|+...+.+++++.+|...|.+++.+.|+..|++|+.|..|.+||
T Consensus         8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwD   87 (307)
T KOG0316|consen    8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWD   87 (307)
T ss_pred             hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEE
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--eeeeEee---cCceEEEEecCCCEEEEEEc
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFK---SGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~--~~~~~~~---~~i~~l~fsp~~~~ll~~s~  700 (835)
                      +.+++. .+.+.+|...|+.+.|+.+. .++++|+.|..+++||.++.  +++..+.   .++.++.+.  +..|++|+.
T Consensus        88 V~TGkv-~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS~  163 (307)
T KOG0316|consen   88 VNTGKV-DRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGSV  163 (307)
T ss_pred             cccCee-eeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeecc
Confidence            999885 89999999999999999885 58899999999999999865  3444443   456666554  568999999


Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCce--EEEEEeCC
Q 003271          701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPT  777 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V--~sv~fspd  777 (835)
                      ||+++.||++.+.....+.  ..+|+|++|+++++.+++++ |++|++.|-.++   +.+..+.+|.+.-  ..|++...
T Consensus       164 DGtvRtydiR~G~l~sDy~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG---klL~sYkGhkn~eykldc~l~qs  238 (307)
T KOG0316|consen  164 DGTVRTYDIRKGTLSSDYF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETG---KLLKSYKGHKNMEYKLDCCLNQS  238 (307)
T ss_pred             CCcEEEEEeecceeehhhc--CCcceeEEecCCCCEEEEeeccceeeecccchh---HHHHHhcccccceeeeeeeeccc
Confidence            9999999999998776664  45899999999999999998 999999999998   7777888876543  45678888


Q ss_pred             CCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCC-eeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          778 FPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       778 g~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~-V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ..++++|+.||.|++||+.+...+ .+..|... |.+++++|.-..|+++.. +.+.+|
T Consensus       239 dthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~-~~~~~~  296 (307)
T KOG0316|consen  239 DTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATG-HGDLFW  296 (307)
T ss_pred             ceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecC-Cceece
Confidence            889999999999999999999888 56666666 789999998777777654 344455

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=5e-30  Score=280.22  Aligned_cols=279  Identities=22%  Similarity=0.411  Sum_probs=254.6

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      .+..|+..|.|+.|+|...+++++-..|.|.|||.++...++.+.-...+|.+..|-...+++++|+.|..|+||+..+.
T Consensus         8 k~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~   87 (794)
T KOG0276|consen    8 KFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG   87 (794)
T ss_pred             HhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeeccceEEEecCCceEEEEecccc
Confidence            44568999999999999999999999999999999999999999988999999999999999999999999999999998


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEeecC---ceEEEEecCC-CEEEEEEcCCcE
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKSG---ATQMRFQPRL-GRILAAAIENYI  704 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~~~---i~~l~fsp~~-~~ll~~s~dg~I  704 (835)
                      +. +..|..|.+.|.||+.||... +++++++|-.|++||.+.. .|..+|.++   +.+++|.|.+ +.+++++.|++|
T Consensus        88 ek-V~~FeAH~DyIR~iavHPt~P-~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV  165 (794)
T KOG0276|consen   88 EK-VKTFEAHSDYIRSIAVHPTLP-YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV  165 (794)
T ss_pred             ee-eEEeeccccceeeeeecCCCC-eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence            86 899999999999999999976 5669999999999999865 567777766   8899999975 678899999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCC--CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSG--EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg--~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                      +||.+....+..++++|...|.|+++-+.|  .||++|+ |.+|+|||..+.   .|+.++.+|...|..+.|+|.-+.|
T Consensus       166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk---~CV~TLeGHt~Nvs~v~fhp~lpii  242 (794)
T KOG0276|consen  166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTK---SCVQTLEGHTNNVSFVFFHPELPII  242 (794)
T ss_pred             EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchH---HHHHHhhcccccceEEEecCCCcEE
Confidence            999999999999999999999999998755  6899999 789999999988   8999999999999999999999999


Q ss_pred             EEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          782 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      ++|+.||+|+||+..+.+.. .+.-.-..|+||+-.+.++.++.|.++|.|.|
T Consensus       243 isgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v  295 (794)
T KOG0276|consen  243 ISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV  295 (794)
T ss_pred             EEecCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE
Confidence            99999999999999988876 45555678999999998889999999888754

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=1.8e-29  Score=281.11  Aligned_cols=308  Identities=21%  Similarity=0.277  Sum_probs=258.2

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      --.++.|..|+.|++|....+                   ....++.||...|+++.|+..|..|++|+.|+.|.|||+-
T Consensus        77 ~l~lAVGYaDGsVqif~~~s~-------------------~~~~tfngHK~AVt~l~fd~~G~rlaSGskDt~IIvwDlV  137 (888)
T KOG0306|consen   77 ILLLAVGYADGSVQIFSLESE-------------------EILITFNGHKAAVTTLKFDKIGTRLASGSKDTDIIVWDLV  137 (888)
T ss_pred             cceEEEEecCceEEeeccCCC-------------------ceeeeecccccceEEEEEcccCceEeecCCCccEEEEEec
Confidence            356799999999999922211                   3466788999999999999999999999999999999998


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-----------------------------------
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------------------------------  630 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-----------------------------------  630 (835)
                      ...-...+.+|.+.|+...|..+.++|++.+.|+.|++||+++..                                   
T Consensus       138 ~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~~~lvt~~~dse~~v~~  217 (888)
T KOG0306|consen  138 GEEGLFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDEKLLVTAGTDSELKVWE  217 (888)
T ss_pred             cceeeEEeecchHHHhHHhccCCCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEecceEEEEecCCceEEEE
Confidence            878888888888888888888777888888888888888874211                                   


Q ss_pred             --------------------------------------------------------------------------------
Q 003271          631 --------------------------------------------------------------------------------  630 (835)
Q Consensus       631 --------------------------------------------------------------------------------  630 (835)
                                                                                                      
T Consensus       218 L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~  297 (888)
T KOG0306|consen  218 LAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETE  297 (888)
T ss_pred             eecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhcccc
Confidence                                                                                            


Q ss_pred             -------------------------------------c--------------e---------------eEEeecCCCCeE
Q 003271          631 -------------------------------------Y--------------S---------------LRTFTGHSTTVM  644 (835)
Q Consensus       631 -------------------------------------~--------------~---------------~~~~~~h~~~V~  644 (835)
                                                           .              .               ...+.+|...|.
T Consensus       298 e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVR  377 (888)
T KOG0306|consen  298 ENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVR  377 (888)
T ss_pred             ccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhhee
Confidence                                                 0              0               012345777888


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~  723 (835)
                      +++++.+. .++++ +..+.|++|+..+.+|++++.+. +.+..|.|.+.++++|...|.+.+||+.+...+.++..|.+
T Consensus       378 sl~vS~d~-~~~~S-ga~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdg  455 (888)
T KOG0306|consen  378 SLCVSSDS-ILLAS-GAGESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDG  455 (888)
T ss_pred             EEEeecCc-eeeee-cCCCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhcccc
Confidence            88888773 24444 44789999999999999999876 67788999999999999999999999999999989999999


Q ss_pred             CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-----cceEE----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-----GECIH----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-----~~~i~----~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      .|.+++.+||++.+++++ |.+|++||+.--..     .+.+.    ..-.-...|.++.++||+++|+++--|.+|+||
T Consensus       456 aIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  456 AIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             ceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            999999999999999999 99999999753211     11110    111235789999999999999999999999999


Q ss_pred             EcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          794 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       794 Dl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      -+++-+.. .+.+|.-+|.||.++||+++++|||.|.+|+||
T Consensus       536 flDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiW  577 (888)
T KOG0306|consen  536 FLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIW  577 (888)
T ss_pred             EecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEe
Confidence            99998876 899999999999999999999999999999999

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.97  E-value=9.7e-30  Score=283.18  Aligned_cols=279  Identities=20%  Similarity=0.384  Sum_probs=253.1

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      ..+.||...|.++++|.|...+++|+ .+.|+||+.++.++++++..  +.+.+..|.|.++++++|...|.+.|||+.+
T Consensus       367 i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~--~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS  443 (888)
T KOG0306|consen  367 IEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITC--GYILASKFVPGDRYIVLGTKNGELQVFDLAS  443 (888)
T ss_pred             eeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEecc--ccEEEEEecCCCceEEEeccCCceEEEEeeh
Confidence            35679999999999999988888776 57899999999999999964  4899999999999999999999999999998


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Cee----------eeEeecCceEEEEecCCC
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSC----------AGVFKSGATQMRFQPRLG  693 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-----~~~----------~~~~~~~i~~l~fsp~~~  693 (835)
                      ... +.+...|.+.|++++.+|++.. +++|+.|.+|++||..-     +..          .-.+...+.++.++|++.
T Consensus       444 ~~l-~Eti~AHdgaIWsi~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk  521 (888)
T KOG0306|consen  444 ASL-VETIRAHDGAIWSISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK  521 (888)
T ss_pred             hhh-hhhhhccccceeeeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence            764 6777799999999999999875 55999999999999742     111          112345699999999999


Q ss_pred             EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      +++++--|++|+||-+.+-+....+.||.-+|.|+..+||++.+++|+ |..|+||-+.-|   .|-..+.+|...|.++
T Consensus       522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFG---DCHKS~fAHdDSvm~V  598 (888)
T KOG0306|consen  522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFG---DCHKSFFAHDDSVMSV  598 (888)
T ss_pred             EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccc---hhhhhhhcccCceeEE
Confidence            999999999999999999999999999999999999999999999999 999999999888   8999999999999999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          773 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|.|....+++++.|+.|+-||-..-+.+ .+.+|...|+|++.+|+|.++++++.|.+|++|.
T Consensus       599 ~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE  662 (888)
T KOG0306|consen  599 QFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWE  662 (888)
T ss_pred             EEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeee
Confidence            99999999999999999999998887776 8899999999999999999999999999999995

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=99.97  E-value=2.4e-29  Score=261.14  Aligned_cols=283  Identities=19%  Similarity=0.248  Sum_probs=246.1

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      .+..+..|++.|++|+.+|+.++++||+.|....||++.++.....+.+|.+.|+++.|+.+|.+||||+.+|.|+||+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCc
Q 003271          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~  703 (835)
                      .++.. ...+...-..|.-+.|||.+. +|++|+.||.|.+|.+.+....+.+.++   +++-.|.|+|++++++..||+
T Consensus       136 stg~~-~~~~~~e~~dieWl~WHp~a~-illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgt  213 (399)
T KOG0296|consen  136 STGGE-QWKLDQEVEDIEWLKWHPRAH-ILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGT  213 (399)
T ss_pred             ccCce-EEEeecccCceEEEEeccccc-EEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCce
Confidence            98875 445545667889999999754 8889999999999999997777777654   777789999999999999999


Q ss_pred             EEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--------cCCC---ceE
Q 003271          704 ISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------CTGN---KFH  770 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--------~~~~---~V~  770 (835)
                      |++|+..++.++..+.. ......++.++..+..++.|+ ++.+++.+..++   +.+....        .+..   .|-
T Consensus       214 i~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sg---KVv~~~n~~~~~l~~~~e~~~esve  290 (399)
T KOG0296|consen  214 IIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSG---KVVNCNNGTVPELKPSQEELDESVE  290 (399)
T ss_pred             EEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccc---eEEEecCCCCccccccchhhhhhhh
Confidence            99999999999988874 334677889999999999998 889998888777   4444433        2233   344


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          771 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++.++..-+..++|+-||+|.|||+...++.....|...|..+.|-+ ..+|++++.||.|++||
T Consensus       291 ~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wD  354 (399)
T KOG0296|consen  291 SIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWD  354 (399)
T ss_pred             hcccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeee
Confidence            45556666788999999999999999999999999999999999998 78999999999999997

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.97  E-value=5.7e-29  Score=248.80  Aligned_cols=279  Identities=19%  Similarity=0.248  Sum_probs=238.2

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      .+.||..+|+-+.|+.+|.+|++++.|.++.||-..+|+.+.++.+|.+.|+||..+.+.++++||+.|.++++||++++
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tG   84 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETG   84 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEe----CCCcEEEEECCC-------CeeeeEee---cCceEEEEecCCCEE
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSINN-------GSCAGVFK---SGATQMRFQPRLGRI  695 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs----~Dg~I~iwDl~s-------~~~~~~~~---~~i~~l~fsp~~~~l  695 (835)
                      +. +..+. ...+|..+.|+++|+.++++..    ..+.|.++|++.       .++...+.   ..++.+.|.|.+..|
T Consensus        85 k~-la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~i  162 (327)
T KOG0643|consen   85 KQ-LATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETI  162 (327)
T ss_pred             cE-EEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccCCEE
Confidence            85 44444 5678999999999886665542    357899999983       34444444   448888999999999


Q ss_pred             EEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          696 LAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      ++|..+|.|.+||++++ +.+.....|...|+.+++++|..++++++ |.+-++||+.+.   .++.++.. ..+|++.+
T Consensus       163 i~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl---~v~Kty~t-e~PvN~aa  238 (327)
T KOG0643|consen  163 IAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTL---EVLKTYTT-ERPVNTAA  238 (327)
T ss_pred             EEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccce---eeEEEeee-ccccccee
Confidence            99999999999999997 44555577999999999999999999999 999999999987   67777664 67899999


Q ss_pred             EeCCCCEEEEEEcCCeEEE--EEcCCCc-------------EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          774 FHPTFPSLLVIGCYETLEL--WNMTENK-------------TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       774 fspdg~~L~sgs~dg~I~I--wDl~~~~-------------~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ++|...+++.|+.....-|  =+.+.++             .-.+.+|-++|++++|+|+|+..++|+.||.|+|.
T Consensus       239 isP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h  314 (327)
T KOG0643|consen  239 ISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH  314 (327)
T ss_pred             cccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence            9999998888877653333  2233332             12678999999999999999999999999999984

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=7.2e-29  Score=285.06  Aligned_cols=278  Identities=27%  Similarity=0.432  Sum_probs=240.0

Q ss_pred             ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC
Q 003271          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (835)
Q Consensus       497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D  576 (835)
                      +....+....+++++++.|+.+++|......+                 ...+.+.+|...|.+++|+||++++++++.|
T Consensus       162 v~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-----------------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D  224 (456)
T KOG0266|consen  162 VTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-----------------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDD  224 (456)
T ss_pred             eEEEEEcCCCCeEEEccCCCcEEEeecccccc-----------------hhhccccccccceeeeEECCCCcEEEEecCC
Confidence            33344555557899999999999995422210                 2344558999999999999999999999999


Q ss_pred             CeEEEEEc-CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271          577 KKAVLWCT-ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       577 g~I~VWd~-~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l  655 (835)
                      ++|+|||+ ..+..++++++|...|++++|+|+++++++|+.|++|+|||+++++ +++.+.+|...|.+++|++++. +
T Consensus       225 ~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~-~~~~l~~hs~~is~~~f~~d~~-~  302 (456)
T KOG0266|consen  225 KTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGE-CVRKLKGHSDGISGLAFSPDGN-L  302 (456)
T ss_pred             ceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCe-EEEeeeccCCceEEEEECCCCC-E
Confidence            99999999 5668999999999999999999999999999999999999999855 5899999999999999999987 5


Q ss_pred             EEEEeCCCcEEEEECCCCe--eeeEee----c-CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCe---
Q 003271          656 LCSCDNNSEIRYWSINNGS--CAGVFK----S-GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV---  725 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~~--~~~~~~----~-~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I---  725 (835)
                      +++++.|+.|++||+.++.  ++..+.    . .+..+.|+|++.++++++.|+.+++||+..+.++..+.+|...+   
T Consensus       303 l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~  382 (456)
T KOG0266|consen  303 LVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCI  382 (456)
T ss_pred             EEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeE
Confidence            6677889999999999998  444443    2 46889999999999999999999999999999999999988753   


Q ss_pred             EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEE--cCCeEEEEEcC
Q 003271          726 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG--CYETLELWNMT  796 (835)
Q Consensus       726 ~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs--~dg~I~IwDl~  796 (835)
                      .+..+++.+.++++++ |+.|++||+.++   ..+..+.+| ...+..+.+++...++++++  .|+.|++|...
T Consensus       383 ~~~~~~~~~~~i~sg~~d~~v~~~~~~s~---~~~~~l~~h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  383 FSPTLSTGGKLIYSGSEDGSVYVWDSSSG---GILQRLEGHSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ecccccCCCCeEEEEeCCceEEEEeCCcc---chhhhhcCCCCCceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence            3445578999999999 999999999986   677778888 88899999999999999998  67899999754

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.7e-29  Score=271.48  Aligned_cols=272  Identities=21%  Similarity=0.288  Sum_probs=244.4

Q ss_pred             cCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC
Q 003271          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (835)
Q Consensus       498 ~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg  577 (835)
                      -++.+.+.+.++.++-..+.|.+|..                   .+-..++.+.-..-+|.++.|-...+++++|+.|.
T Consensus        17 KsVd~HPtePw~la~LynG~V~IWny-------------------etqtmVksfeV~~~PvRa~kfiaRknWiv~GsDD~   77 (794)
T KOG0276|consen   17 KSVDFHPTEPWILAALYNGDVQIWNY-------------------ETQTMVKSFEVSEVPVRAAKFIARKNWIVTGSDDM   77 (794)
T ss_pred             eeeecCCCCceEEEeeecCeeEEEec-------------------ccceeeeeeeecccchhhheeeeccceEEEecCCc
Confidence            34556777889999999999999933                   23345666777778899999999999999999999


Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~  657 (835)
                      .|+||+..+++.++.++.|.+.|.||+.+|.-.+++|+|.|-+|++||.+..-.+..++.+|...|++++|+|....-++
T Consensus        78 ~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFa  157 (794)
T KOG0276|consen   78 QIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFA  157 (794)
T ss_pred             eEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCcccee
Confidence            99999999999999999999999999999999999999999999999999888888999999999999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCC--CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 003271          658 SCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRL--GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT  732 (835)
Q Consensus       658 sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~--~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp  732 (835)
                      +++-|++|++|.+.+..+..++.+   ++.++.+-+.+  .++++|+.|..|+|||..+..|+.++.+|...|..++|+|
T Consensus       158 S~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp  237 (794)
T KOG0276|consen  158 SASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHP  237 (794)
T ss_pred             eeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecC
Confidence            999999999999999888887775   49999998865  4899999999999999999999999999999999999999


Q ss_pred             CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271          733 SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE  791 (835)
Q Consensus       733 dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~  791 (835)
                      .-.+|++|+ ||+|+||+..+-   +...++.-....+++++-.+.+..+++|...|.|.
T Consensus       238 ~lpiiisgsEDGTvriWhs~Ty---~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~  294 (794)
T KOG0276|consen  238 ELPIIISGSEDGTVRIWNSKTY---KLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVT  294 (794)
T ss_pred             CCcEEEEecCCccEEEecCcce---ehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEE
Confidence            999999999 999999998876   55666777788999999999888888887777554

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=7.8e-28  Score=252.90  Aligned_cols=265  Identities=30%  Similarity=0.539  Sum_probs=234.0

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ..++++++.|+.+.+|......                   ....+..|...|.++.|++++++|++++.||.|++||+.
T Consensus        21 ~~~l~~~~~~g~i~i~~~~~~~-------------------~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200          21 GKLLATGSGDGTIKVWDLETGE-------------------LLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             CCEEEEeecCcEEEEEEeeCCC-------------------cEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            3688999999999999443221                   345667899999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      +++.+..+..|...|.++.|++++.++++++.|+.|++||+.+.+. ...+..|...|.+++|+|++. ++++++.|+.|
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~-~l~~~~~~~~i  159 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKC-LTTLRGHTDWVNSVAFSPDGT-FVASSSQDGTI  159 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEE-EEEeccCCCcEEEEEEcCcCC-EEEEEcCCCcE
Confidence            9888888989999999999999988899888899999999996553 666778999999999999854 67677779999


Q ss_pred             EEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          666 RYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                      ++||+++++.+..+.   ..+.++.|++++..+++++.++.|++||+++++.+..+..|...+.+++|++++.++++++ 
T Consensus       160 ~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  239 (289)
T cd00200         160 KLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSE  239 (289)
T ss_pred             EEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcC
Confidence            999999887776665   3588999999999999999999999999999998888878999999999999999999999 


Q ss_pred             CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          742 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      |+.|++||+.++   ..+..+..|...+.+++|++++.+|++++.|+.|++|+
T Consensus       240 ~~~i~i~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~  289 (289)
T cd00200         240 DGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD  289 (289)
T ss_pred             CCcEEEEEcCCc---eeEEEccccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence            999999999876   66777778888999999999999999999999999996

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=9.2e-30  Score=252.01  Aligned_cols=278  Identities=21%  Similarity=0.264  Sum_probs=247.3

Q ss_pred             EecCCCCCEEEEEEeC---CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          550 LIPASTSKVESCHFSP---DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSp---dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      +..||+.+|..++|||   +|-+|++++.|+.=.+-+-+++.-+.+|.+|.+.|++..++.+...-++++.|-+.+|||.
T Consensus         9 ~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw~a   88 (334)
T KOG0278|consen    9 TCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDA   88 (334)
T ss_pred             EEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhhhh
Confidence            3469999999999986   8889999999999999999999999999999999999999999889999999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEeecCceEEEEecCCCEEEEEEcCC
Q 003271          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKSGATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----~~~~~~~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      .++.. +..+. |..-|.+++|+.|.++ |++|+.+..++|||++..+.    +.-..++|..+.|......|++.+.|+
T Consensus        89 ~tgde-lhsf~-hkhivk~~af~~ds~~-lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~  165 (334)
T KOG0278|consen   89 VTGDE-LHSFE-HKHIVKAVAFSQDSNY-LLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDK  165 (334)
T ss_pred             hhhhh-hhhhh-hhheeeeEEecccchh-hhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCC
Confidence            98875 55554 7888999999999764 55999999999999987543    233446689999999999999999999


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271          703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~  782 (835)
                      .|++||.+++..+.++. ...+|+++.++++|++|..+..+.|++||..+-   ..+..+.. ...|.+..++|+...++
T Consensus       166 tVRLWD~rTgt~v~sL~-~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf---~~lKs~k~-P~nV~SASL~P~k~~fV  240 (334)
T KOG0278|consen  166 TVRLWDHRTGTEVQSLE-FNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSF---GLLKSYKM-PCNVESASLHPKKEFFV  240 (334)
T ss_pred             ceEEEEeccCcEEEEEe-cCCCCcceeeccCCCEEEEecCceeEEeccccc---cceeeccC-ccccccccccCCCceEE
Confidence            99999999999999887 678999999999999999888889999999886   55555543 56788999999999999


Q ss_pred             EEEcCCeEEEEEcCCCcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          783 VIGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       783 sgs~dg~I~IwDl~~~~~~~--l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|+.|..++.||..++..+.  ..+|.++|.|+.|+|+|...++|+.||+|+||.
T Consensus       241 aGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQ  295 (334)
T KOG0278|consen  241 AGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQ  295 (334)
T ss_pred             ecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEE
Confidence            99999999999999999883  379999999999999999999999999999993

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=4.3e-30  Score=261.59  Aligned_cols=278  Identities=23%  Similarity=0.362  Sum_probs=244.0

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec--------cCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~--------~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      +...-+.|..|||||.||++|+.||.|.|||..+|+..+.++        -+...|.|+.|+.|...|++|+.||.|+||
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvW  290 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVW  290 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEE
Confidence            445568999999999999999999999999999998775543        478899999999999999999999999999


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcC
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~d  701 (835)
                      .+.++.+..+.-..|...|+|+.|+.|+..++ +++.|.++++.-+++|++++.+.++   ++...|.++|.++++++.|
T Consensus       291 ri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiL-S~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsD  369 (508)
T KOG0275|consen  291 RIETGQCLRRFDRAHTKGVTCLSFSRDNSQIL-SASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSD  369 (508)
T ss_pred             EEecchHHHHhhhhhccCeeEEEEccCcchhh-cccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCC
Confidence            99999864444458999999999999987665 8999999999999999999999876   7788999999999999999


Q ss_pred             CcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEee---cCCCceEEEEE
Q 003271          702 NYISILDVETQVCRLKLQG--HKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELS---CTGNKFHSCVF  774 (835)
Q Consensus       702 g~I~IwDl~t~~~i~~l~~--h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~---~~~~~V~sv~f  774 (835)
                      |+|++|+..+.+|+.+|+.  ...+|.++...|.+ ..+++|. .++|+|.++..    ..++++.   ..++.+.+++.
T Consensus       370 gtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qG----QvVrsfsSGkREgGdFi~~~l  445 (508)
T KOG0275|consen  370 GTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQG----QVVRSFSSGKREGGDFINAIL  445 (508)
T ss_pred             ccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccc----eEEeeeccCCccCCceEEEEe
Confidence            9999999999999988875  45578888777754 5566666 88999999864    3555554   34567889999


Q ss_pred             eCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          775 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       775 spdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|.|.++++.+.|+.++.|.+.+|++. .+.-|+..|..++-+|..++||+-+.||.+++|+
T Consensus       446 SpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             cCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            999999999999999999999999987 7788999999999999999999999999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.8e-30  Score=266.79  Aligned_cols=266  Identities=20%  Similarity=0.391  Sum_probs=227.9

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      +..+++|..|.+|++|+..                   .....+.+.||++.|.|+.|.  .+.|++|+.|.+|+|||++
T Consensus       207 D~kiVSGlrDnTikiWD~n-------------------~~~c~~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~  265 (499)
T KOG0281|consen  207 DEKIVSGLRDNTIKIWDKN-------------------SLECLKILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVN  265 (499)
T ss_pred             chhhhcccccCceEEeccc-------------------cHHHHHhhhcCCCcEEeeecc--ceEEEecCCCceEEEEecc
Confidence            3678999999999999332                   234567788999999999995  5699999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg  663 (835)
                      +++++.++-+|.+.|..+.|+.  .+++|++.|.+|.|||+..+..  +.+.+.+|...|..+.|+..   ++++++.|.
T Consensus       266 tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~k---yIVsASgDR  340 (499)
T KOG0281|consen  266 TGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDR  340 (499)
T ss_pred             CCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccccc---eEEEecCCc
Confidence            9999999999999999999974  4999999999999999987653  34678899999999999843   888999999


Q ss_pred             cEEEEECCCCeeeeEeecCceEEE-EecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          664 EIRYWSINNGSCAGVFKSGATQMR-FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~~i~~l~-fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                      +|++|++.++++++++.++-..++ ....+..+++|+.|++|++||++.|.++..++||+.-|.|+.|+  .+.|++|. 
T Consensus       341 TikvW~~st~efvRtl~gHkRGIAClQYr~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaY  418 (499)
T KOG0281|consen  341 TIKVWSTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAY  418 (499)
T ss_pred             eEEEEeccceeeehhhhcccccceehhccCeEEEecCCCceEEEEeccccHHHHHHhchHHhhhheeec--Cceeeeccc
Confidence            999999999999999987755544 34456778889999999999999999999999999999999995  56688888 


Q ss_pred             CCeEEEEEcCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          742 DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~------~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      ||+|+|||+..+...      .|+..+..|.+.|..+.|.  ...|++++.|.+|.|||..++...
T Consensus       419 DGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~~~  482 (499)
T KOG0281|consen  419 DGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGPPS  482 (499)
T ss_pred             cceEEEEecccccCCcccccchHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCCcc
Confidence            999999999876432      3667777889999999994  457999999999999999876554

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.96  E-value=1.7e-29  Score=265.49  Aligned_cols=280  Identities=20%  Similarity=0.355  Sum_probs=242.9

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ...+..|.+.|..+.|-++...|++|+.|..|++|++...+  .+.++.+..+.|+++.|.++++++++++.|+.+++|+
T Consensus       168 ~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  168 LFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWN  247 (459)
T ss_pred             hhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeee
Confidence            44577899999999999998899999999999999987666  6788888899999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcCCc
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~dg~  703 (835)
                      ++.... ..++.+|.+.|+++.|.-.... +++|+.|.+|++||+.+..|.+++-..  +..|+..  ...++++..|++
T Consensus       248 vd~~r~-~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  248 VDSLRL-RHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKK  323 (459)
T ss_pred             ccchhh-hhhhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheeccccccccccceEec--ceeeeecccccc
Confidence            998764 7899999999999999876443 789999999999999999998876544  3344443  566788889999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC----CCceEEEEEeCCC
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTF  778 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~----~~~V~sv~fspdg  778 (835)
                      |++||+++..++.....+. .|+++..+.++..|.+++ |+++.++|+++.   .....+...    ...++.+.|+|++
T Consensus       324 vRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~---eI~~~~sA~g~k~asDwtrvvfSpd~  399 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTK---EIRQTFSAEGFKCASDWTRVVFSPDG  399 (459)
T ss_pred             eEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccc---cEEEEeeccccccccccceeEECCCC
Confidence            9999999999999988655 999999999999999999 999999999997   455554432    2347889999999


Q ss_pred             CEEEEEEcCCeEEEEEcCCCcEE-Eecc-CC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          779 PSLLVIGCYETLELWNMTENKTL-TLSA-HD-KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       779 ~~L~sgs~dg~I~IwDl~~~~~~-~l~~-h~-~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|+++|+.||.|+||++.++++. .+.. +. ..|++++|+|.|..|++++.++.+.+|.
T Consensus       400 ~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  400 SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence            99999999999999999999987 3332 22 3699999999999999999999999994

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=99.96  E-value=5.6e-28  Score=245.47  Aligned_cols=264  Identities=20%  Similarity=0.354  Sum_probs=228.3

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      .++++|+.|..|-+|...++.+                  .+-.+++|+++|..+.|.+|+..|++++.|++|+.||+++
T Consensus        60 s~~aSgG~Dr~I~LWnv~gdce------------------N~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~t  121 (338)
T KOG0265|consen   60 SCFASGGSDRAIVLWNVYGDCE------------------NFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAET  121 (338)
T ss_pred             CeEeecCCcceEEEEecccccc------------------ceeeeccccceeEeeeeccCCCEEEEecCCceEEEEeccc
Confidence            6899999999999995444422                  2456679999999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      ++.++.+++|...|..+.-+.-| .++.+++.|++++|||+++... ++++. ..-.++++.|...+..++ +|+-|+.|
T Consensus       122 G~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~-~~t~~-~kyqltAv~f~d~s~qv~-sggIdn~i  198 (338)
T KOG0265|consen  122 GKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEA-IKTFE-NKYQLTAVGFKDTSDQVI-SGGIDNDI  198 (338)
T ss_pred             ceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccch-hhccc-cceeEEEEEeccccccee-eccccCce
Confidence            99999999999999999854444 4677889999999999997553 44443 356799999998877655 88999999


Q ss_pred             EEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCC----CeEEEEEcCCCC----CeEEEEEcCCC
Q 003271          666 RYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVET----QVCRLKLQGHKN----QVHSVCWNTSG  734 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t----~~~i~~l~~h~~----~I~sl~fspdg  734 (835)
                      ++||++.......+.++   |+.+..+++|.++++-+.|.++++||++.    .+++..+.+|..    ....++|+|++
T Consensus       199 kvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~  278 (338)
T KOG0265|consen  199 KVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG  278 (338)
T ss_pred             eeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence            99999999999888755   89999999999999999999999999984    356777777543    44578999999


Q ss_pred             CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          735 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       735 ~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      +++.+|+ |..+++||....   .++..+.+|.+.|+++.|+|..++|.+++.|.+|++=.
T Consensus       279 ~~i~ags~dr~vyvwd~~~r---~~lyklpGh~gsvn~~~Fhp~e~iils~~sdk~i~lge  336 (338)
T KOG0265|consen  279 TKITAGSADRFVYVWDTTSR---RILYKLPGHYGSVNEVDFHPTEPIILSCSSDKTIYLGE  336 (338)
T ss_pred             CccccccccceEEEeecccc---cEEEEcCCcceeEEEeeecCCCcEEEEeccCceeEeec
Confidence            9999999 999999999876   78999999999999999999999999999999998743

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=6.5e-28  Score=240.69  Aligned_cols=280  Identities=18%  Similarity=0.264  Sum_probs=245.1

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEe
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWD  625 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~--~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWD  625 (835)
                      +.+.+|..+|.+++|+.+|..|++|+.|+++.||+++..+...  ...+|.+.|-.++|+|. ...|++++.|.+|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            5567999999999999999999999999999999998776554  34689999999999884 67899999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcCCc
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~  703 (835)
                      ++.++. ........+ -.-+.|+|+|+ .++.++.|..|.+.|.++.+.....  +..+..++|+-+++.++.....|.
T Consensus        94 ~r~~k~-~~~i~~~~e-ni~i~wsp~g~-~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~  170 (313)
T KOG1407|consen   94 IRSGKC-TARIETKGE-NINITWSPDGE-YIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGC  170 (313)
T ss_pred             eccCcE-EEEeeccCc-ceEEEEcCCCC-EEEEecCcccEEEEEecccceeehhcccceeeeeeecCCCCEEEEecCCce
Confidence            998875 333332333 34578999987 4557888999999999998877554  456888999977777777777799


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~  782 (835)
                      |.|......+++..+..|.....||.|+|+|+|+++|+ |..+.+||+...   .|++.+..+..+|..+.|+.+|++|+
T Consensus       171 v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~EL---iC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  171 VEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDEL---ICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             EEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHh---hhheeeccccCceEEEEeccCcceee
Confidence            99999999999999999999999999999999999999 999999999876   88899999999999999999999999


Q ss_pred             EEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC---------CcEEEe
Q 003271          783 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD---------KCVKIW  834 (835)
Q Consensus       783 sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D---------G~V~IW  834 (835)
                      +++.|..|-|=++++|..+....++++...++|+|...+||-+++|         |.|+||
T Consensus       248 SaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~ddk~~d~~reag~vKiF  308 (313)
T KOG1407|consen  248 SASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDDKDGDSNREAGTVKIF  308 (313)
T ss_pred             ccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecCCCCccccccceeEEe
Confidence            9999999999999999999888999999999999999999988865         567765

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=3.9e-27  Score=241.84  Aligned_cols=282  Identities=21%  Similarity=0.295  Sum_probs=239.4

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC--CCeEEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRV  623 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~--Dg~I~I  623 (835)
                      +..+.++.-.+.|+++.|+++|.+|++++.|..|+|||..+++.++++..+.-.|..++|......++.++.  |.+|+.
T Consensus         5 ~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIry   84 (311)
T KOG1446|consen    5 RPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRY   84 (311)
T ss_pred             ccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEE
Confidence            344555667788999999999999999999999999999999999999988889999999887777777776  889999


Q ss_pred             EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-CceEEEEecCCCEEEEEEcCC
Q 003271          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-GATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      .++.++++ ++.+.||...|.+|+.+|-++ .+++++.|++|++||++..+|...+.. +...++|+|.|-.++++...+
T Consensus        85 Lsl~dNky-lRYF~GH~~~V~sL~~sP~~d-~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi~AfDp~GLifA~~~~~~  162 (311)
T KOG1446|consen   85 LSLHDNKY-LRYFPGHKKRVNSLSVSPKDD-TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPIAAFDPEGLIFALANGSE  162 (311)
T ss_pred             EEeecCce-EEEcCCCCceEEEEEecCCCC-eEEecccCCeEEeeEecCCCCceEEecCCCcceeECCCCcEEEEecCCC
Confidence            99999886 999999999999999999975 677999999999999999888877764 456778999988888888878


Q ss_pred             cEEEEECCCC--eEEEEEc---CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc---eEEEE
Q 003271          703 YISILDVETQ--VCRLKLQ---GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK---FHSCV  773 (835)
Q Consensus       703 ~I~IwDl~t~--~~i~~l~---~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~---V~sv~  773 (835)
                      .|++||++.-  .+..++.   +.....+.+.|+|||++|+.++ .+.+++.|.-+|   ..+.++..+...   ...++
T Consensus       163 ~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G---~~~~tfs~~~~~~~~~~~a~  239 (311)
T KOG1446|consen  163 LIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDG---TVKSTFSGYPNAGNLPLSAT  239 (311)
T ss_pred             eEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCC---cEeeeEeeccCCCCcceeEE
Confidence            9999999853  3333333   3467889999999999999888 889999999988   456666554433   37889


Q ss_pred             EeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          774 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       774 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~-h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      |.|++.+|++|+.||+|.+|++++++.+ .+.+ +...+.++.|+|...++++++  ..+.+|
T Consensus       240 ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa~--s~l~fw  300 (311)
T KOG1446|consen  240 FTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSAS--SNLVFW  300 (311)
T ss_pred             ECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeecC--ceEEEE
Confidence            9999999999999999999999999887 5666 789999999999877777765  467777

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=2.8e-28  Score=274.78  Aligned_cols=280  Identities=21%  Similarity=0.375  Sum_probs=247.3

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~  630 (835)
                      +...+..|..++|+|...+++++-..|.|.+||..-+.++..|.+|.++|..|+|+|...+|++|+.|..|+||+..+.+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr   84 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR   84 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce
Confidence            34456779999999999999999999999999999999999999999999999999999999999999999999999866


Q ss_pred             ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEE
Q 003271          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISIL  707 (835)
Q Consensus       631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~Iw  707 (835)
                       ++.++.+|-+.|..+.|++.-. .|+++++|-+|+||+..+.+|+..+.++   +.|..|+|..+.+++++.|-+|+||
T Consensus        85 -clftL~GHlDYVRt~~FHheyP-WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVW  162 (1202)
T KOG0292|consen   85 -CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVW  162 (1202)
T ss_pred             -ehhhhccccceeEEeeccCCCc-eEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEE
Confidence             5889999999999999999876 5559999999999999999999999877   7888899999999999999999999


Q ss_pred             ECCCC-----------------------------eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271          708 DVETQ-----------------------------VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  757 (835)
Q Consensus       708 Dl~t~-----------------------------~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~  757 (835)
                      |+..-                             ...+.+.||...|.-++|+|.-.+|++|+ |..|++|.+...+. -
T Consensus       163 DisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-W  241 (1202)
T KOG0292|consen  163 DISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-W  241 (1202)
T ss_pred             eecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccc-e
Confidence            98521                             11245678999999999999999999999 88999999976532 3


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          758 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       758 ~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .+.+..+|.+.|.++.|+|....|++.+.|++|+|||+...+.+ ++....+..+.++.+|..+++++|- |+-+.||
T Consensus       242 EvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW~laahP~lNLfAAgH-DsGm~VF  318 (1202)
T KOG0292|consen  242 EVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFWILAAHPELNLFAAGH-DSGMIVF  318 (1202)
T ss_pred             eehhhhcccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEEEEEecCCcceeeeec-CCceEEE
Confidence            56677899999999999999999999999999999999998888 5555567899999999998887665 5555554

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=3e-27  Score=237.23  Aligned_cols=268  Identities=22%  Similarity=0.385  Sum_probs=218.2

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEe-cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l-~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ..++++++.|..|++|...+                +.++.....+ .+|+..|.+++|+|.|++||+|+.|.++.||.-
T Consensus        27 g~ilAscg~Dk~vriw~~~~----------------~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k   90 (312)
T KOG0645|consen   27 GVILASCGTDKAVRIWSTSS----------------GDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKK   90 (312)
T ss_pred             ceEEEeecCCceEEEEecCC----------------CCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeec
Confidence            45899999999999993332                1224444444 479999999999999999999999999999976


Q ss_pred             C--CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271          585 E--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       585 ~--t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                      .  +++++.++++|...|.|++|+++|++|||++.|+.|-||.+....  .+...+..|...|..+.|+|.. .+|++++
T Consensus        91 ~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~-dlL~S~S  169 (312)
T KOG0645|consen   91 EDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTE-DLLFSCS  169 (312)
T ss_pred             CCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCc-ceeEEec
Confidence            5  467889999999999999999999999999999999999998543  3567889999999999999984 4899999


Q ss_pred             CCCcEEEEECCC---CeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC
Q 003271          661 NNSEIRYWSINN---GSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG  734 (835)
Q Consensus       661 ~Dg~I~iwDl~s---~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg  734 (835)
                      .|.+|++|+-..   -.++..+.++   +.+++|++.|..+++++.|++|+||-..+.-.    .-|...++.+.|. + 
T Consensus       170 YDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~~----~~~sr~~Y~v~W~-~-  243 (312)
T KOG0645|consen  170 YDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDLS----GMHSRALYDVPWD-N-  243 (312)
T ss_pred             cCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCcc----hhcccceEeeeec-c-
Confidence            999999998872   3566666644   78899999999999999999999998663211    1278899999998 4 


Q ss_pred             CEEEEEe-CCeEEEEEcCCCCC---cc-eEEEeecCCCceEEEEEeCC-CCEEEEEEcCCeEEEEEcC
Q 003271          735 EYLASVS-DELVRVWSIGSGSK---GE-CIHELSCTGNKFHSCVFHPT-FPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       735 ~~Lasgs-Dg~I~IwDl~t~~~---~~-~i~~l~~~~~~V~sv~fspd-g~~L~sgs~dg~I~IwDl~  796 (835)
                      ..|++++ |+.|++|.......   .. ....-..|...|+++.|.|. ...|++++.||.|++|.+.
T Consensus       244 ~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  244 GVIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             cceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence            4566666 99999998764311   11 12234568889999999995 6789999999999999874

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=99.96  E-value=8.2e-28  Score=248.44  Aligned_cols=277  Identities=18%  Similarity=0.291  Sum_probs=238.5

Q ss_pred             CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003271          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (835)
Q Consensus       499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~  578 (835)
                      +.++++.+.++++|+.|+++++|+...+                   ....++.||...|..+++|+-..||++++.|+.
T Consensus       156 ~vavdP~n~wf~tgs~DrtikIwDlatg-------------------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~  216 (460)
T KOG0285|consen  156 SVAVDPGNEWFATGSADRTIKIWDLATG-------------------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQ  216 (460)
T ss_pred             EEeeCCCceeEEecCCCceeEEEEcccC-------------------eEEEeecchhheeeeeeecccCceEEEecCCCe
Confidence            5566788899999999999999944333                   345678899999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      |+.||++..+.++.+.+|-..|.|++.+|.-..|+||+.|.+++|||+++.. .+..+.+|..+|..+.+.|.+.. +++
T Consensus       217 VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~-~V~~l~GH~~~V~~V~~~~~dpq-vit  294 (460)
T KOG0285|consen  217 VKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRA-SVHVLSGHTNPVASVMCQPTDPQ-VIT  294 (460)
T ss_pred             eEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccc-eEEEecCCCCcceeEEeecCCCc-eEE
Confidence            9999999999999999999999999999999999999999999999999865 58999999999999999987664 559


Q ss_pred             EeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271          659 CDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE  735 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~  735 (835)
                      |+.|++|++||++.++....+..   .+.+++.+|....+++++. ..|+-|++..+..+..+.+|...|.++..+.||-
T Consensus       295 ~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~-dnik~w~~p~g~f~~nlsgh~~iintl~~nsD~v  373 (460)
T KOG0285|consen  295 GSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP-DNIKQWKLPEGEFLQNLSGHNAIINTLSVNSDGV  373 (460)
T ss_pred             ecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC-ccceeccCCccchhhccccccceeeeeeeccCce
Confidence            99999999999999988776654   4888999998776666655 5689999999999999999999999999988887


Q ss_pred             EEEEEeCCeEEEEEcCCCCCcceEEEeec-----CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          736 YLASVSDELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       736 ~LasgsDg~I~IwDl~t~~~~~~i~~l~~-----~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      +++.+..|.+.+||.+++.......+...     ....|.+.+|...+..|+++..|.+|++|.-++
T Consensus       374 ~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  374 LVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             EEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence            66555588999999999854333333221     245689999999999999999999999997544

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=6.2e-28  Score=245.19  Aligned_cols=286  Identities=24%  Similarity=0.387  Sum_probs=240.2

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC------------------CeEEEEeccCCCCeEEEEECC
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------------------FTVKSTLEEHTQWITDVRFSP  607 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------------------~~~i~~l~~h~~~V~sv~fsp  607 (835)
                      .|...+..|..++.+.+|++||.++|+|+.|..|+|.|++.                  --.++++..|.+.|+++.|+|
T Consensus       103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP  182 (430)
T KOG0640|consen  103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP  182 (430)
T ss_pred             cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence            35566789999999999999999999999999999999861                  135678889999999999999


Q ss_pred             CCCEEEEEECCCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------e
Q 003271          608 SLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------K  680 (835)
Q Consensus       608 dg~~Latgs~Dg~I~IWDl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~  680 (835)
                      ...+|++|+.|++|++||+...... .........+|.+|.|+|.|+ +++.|..-.++++||+++..|....      .
T Consensus       183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGe-fllvgTdHp~~rlYdv~T~QcfvsanPd~qht  261 (430)
T KOG0640|consen  183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGE-FLLVGTDHPTLRLYDVNTYQCFVSANPDDQHT  261 (430)
T ss_pred             hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCc-eEEEecCCCceeEEeccceeEeeecCcccccc
Confidence            9999999999999999999864321 111223456899999999988 5557887889999999998876543      3


Q ss_pred             cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-CC-CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271          681 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  757 (835)
Q Consensus       681 ~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~-~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~  757 (835)
                      +.++++.+++.++..++++.||.|++||--+++|+.++.. |. ..|.+..|..+++||++.+ |..|++|.+.++   .
T Consensus       262 ~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~---R  338 (430)
T KOG0640|consen  262 GAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTG---R  338 (430)
T ss_pred             cceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCC---c
Confidence            5699999999999999999999999999999999988764 44 5789999999999999988 999999999998   7


Q ss_pred             eEEEeecCCC-----ceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271          758 CIHELSCTGN-----KFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       758 ~i~~l~~~~~-----~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      ++.++.+.+.     --+...|+....+++.-... +.+.-||.++...+  .-.+|.+.+..+.-+|.+..+++|++|-
T Consensus       339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~  418 (430)
T KOG0640|consen  339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDF  418 (430)
T ss_pred             eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccc
Confidence            7877765421     12445677778887776654 58999999988766  3459999999999999999999999999


Q ss_pred             cEEEeC
Q 003271          830 CVKIWK  835 (835)
Q Consensus       830 ~V~IWd  835 (835)
                      ++++|.
T Consensus       419 raRFWy  424 (430)
T KOG0640|consen  419 RARFWY  424 (430)
T ss_pred             eeeeee
Confidence            999993

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=2.9e-27  Score=246.68  Aligned_cols=276  Identities=22%  Similarity=0.333  Sum_probs=234.1

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEecCCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd---g~~Latgs~Dg~I~IWDl~t~  629 (835)
                      -|.+-|.++...  +++|++|++||.++|||. .|+.+..+.+|.++|.+++|.-.   ...|++++.|.++++|.++.+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~  179 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVG  179 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCc
Confidence            477888888877  679999999999999996 57889999999999998888543   335999999999999999876


Q ss_pred             Cce---eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------------------------eeeEee-
Q 003271          630 DYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------------------------CAGVFK-  680 (835)
Q Consensus       630 ~~~---~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-------------------------~~~~~~-  680 (835)
                      ...   +....+|...|.+++..+++. .+++|+.|..|.||+..+..                         .+..+. 
T Consensus       180 ~~~~~~~~~~~GHk~~V~sVsv~~sgt-r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G  258 (423)
T KOG0313|consen  180 ENKVKALKVCRGHKRSVDSVSVDSSGT-RFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG  258 (423)
T ss_pred             hhhhhHHhHhcccccceeEEEecCCCC-eEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc
Confidence            542   234459999999999999976 77799999999999932210                         111122 


Q ss_pred             --cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271          681 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  757 (835)
Q Consensus       681 --~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~  757 (835)
                        ..+..+.|++ ...+++++.|.+|+.||+.++.++..+. ....+.|+..+|..++|++|+ |..|++||.+++....
T Consensus       259 Ht~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~-~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~  336 (423)
T KOG0313|consen  259 HTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLT-TNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSV  336 (423)
T ss_pred             cccceeeEEEcC-CCceEeecccceEEEEEeecccceeeee-cCcceeEeecccccceeeecCCCCceeecCCCCCCCce
Confidence              3477888988 6889999999999999999999988887 467899999999999999999 9999999999987767


Q ss_pred             eEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEEcCCCc-EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          758 CIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK-TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       758 ~i~~l~~~~~~V~sv~fspdg~~-L~sgs~dg~I~IwDl~~~~-~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ....+.+|.+.|.+|.|+|...+ |++++.|+++++||+++.+ .+ .+.+|.+.|.++.|. ++.+|++|+.|.+|+|+
T Consensus       337 v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~  415 (423)
T KOG0313|consen  337 VSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGADNKLRIF  415 (423)
T ss_pred             eEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccCcceEEEe
Confidence            88899999999999999998765 6778889999999999877 44 888999999999996 56799999999999997


Q ss_pred             C
Q 003271          835 K  835 (835)
Q Consensus       835 d  835 (835)
                      +
T Consensus       416 ~  416 (423)
T KOG0313|consen  416 K  416 (423)
T ss_pred             c
Confidence            4

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.96  E-value=2.6e-26  Score=282.04  Aligned_cols=284  Identities=14%  Similarity=0.226  Sum_probs=223.9

Q ss_pred             ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeC
Q 003271          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGH  575 (835)
Q Consensus       497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~  575 (835)
                      +....++..+.++++|+.|+.|++|........    +      .... ..+..+. +...|.+++|++ ++.+||+++.
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~----~------~~~~-~~~~~~~-~~~~v~~l~~~~~~~~~las~~~  553 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKD----G------RDIH-YPVVELA-SRSKLSGICWNSYIKSQVASSNF  553 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCccccc----c------cccc-cceEEec-ccCceeeEEeccCCCCEEEEEeC
Confidence            344555666789999999999999954321000    0      0000 0112222 346799999987 4789999999


Q ss_pred             CCeEEEEEcCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~  654 (835)
                      ||+|+|||+.+++.+..+.+|.+.|++++|+| ++.+|++|+.|++|+|||+.++.. +..+..+ ..|.++.|++....
T Consensus       554 Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~-~~~~~~~-~~v~~v~~~~~~g~  631 (793)
T PLN00181        554 EGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVS-IGTIKTK-ANICCVQFPSESGR  631 (793)
T ss_pred             CCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcE-EEEEecC-CCeEEEEEeCCCCC
Confidence            99999999999999999999999999999997 789999999999999999987653 5555544 67999999765556


Q ss_pred             EEEEEeCCCcEEEEECCCCe-eeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC------CeEEEEEcCCCCC
Q 003271          655 LLCSCDNNSEIRYWSINNGS-CAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET------QVCRLKLQGHKNQ  724 (835)
Q Consensus       655 ll~sgs~Dg~I~iwDl~s~~-~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t------~~~i~~l~~h~~~  724 (835)
                      ++++|+.|+.|++||+++.+ .+..+.   ..+..+.|. ++..+++++.|+.|++||++.      ..++..+.+|...
T Consensus       632 ~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~  710 (793)
T PLN00181        632 SLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNV  710 (793)
T ss_pred             EEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCC
Confidence            88899999999999998765 333333   458889997 678999999999999999974      3567889999999


Q ss_pred             eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce--------E--EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          725 VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC--------I--HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       725 I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~--------i--~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      +.+++|++++.+|++|+ |+.|+||+.........        +  .....+...|.+++|++++..|++++.+|.|+||
T Consensus       711 i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~~~~~lva~~~dG~I~i~  790 (793)
T PLN00181        711 KNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRGQSSTLVAANSTGNIKIL  790 (793)
T ss_pred             eeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcCCCCeEEEecCCCcEEEE
Confidence            99999999999999999 99999999865421100        0  0112345679999999999999999999999999


Q ss_pred             Ec
Q 003271          794 NM  795 (835)
Q Consensus       794 Dl  795 (835)
                      ++
T Consensus       791 ~~  792 (793)
T PLN00181        791 EM  792 (793)
T ss_pred             ec
Confidence            96

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.3e-27  Score=232.34  Aligned_cols=266  Identities=22%  Similarity=0.288  Sum_probs=231.5

Q ss_pred             ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003271          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (835)
Q Consensus       500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I  579 (835)
                      ..+....++..+.+.|.+|++|....                   ...++++.+|...|..++.+.|...|++|+.|+.|
T Consensus        23 vryN~dGnY~ltcGsdrtvrLWNp~r-------------------g~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v   83 (307)
T KOG0316|consen   23 VRYNVDGNYCLTCGSDRTVRLWNPLR-------------------GALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAV   83 (307)
T ss_pred             EEEccCCCEEEEcCCCceEEeecccc-------------------cceeeeecCCCceeeeccccccccccccCCCCceE
Confidence            33444557888889999999993322                   24688899999999999999999999999999999


Q ss_pred             EEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~~~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      .+||+++|+.++.+.+|.+.|+.|+|+.+...+++|+.|.+|++||.++.. .++.++....+.|.+|...   ++.|++
T Consensus        84 ~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---~heIva  160 (307)
T KOG0316|consen   84 QVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---EHEIVA  160 (307)
T ss_pred             EEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec---ccEEEe
Confidence            999999999999999999999999999999999999999999999998654 3567788888999999987   447889


Q ss_pred             EeCCCcEEEEECCCCeeeeE-eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeE--EEEEcCCCC
Q 003271          659 CDNNSEIRYWSINNGSCAGV-FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH--SVCWNTSGE  735 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~~~-~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~--sl~fspdg~  735 (835)
                      |+.||+++.||++.|..... +..+++++.|+++++..++++.|+.+++.|-.+++.+..+++|.+.-.  .++++....
T Consensus       161 GS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdt  240 (307)
T KOG0316|consen  161 GSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDT  240 (307)
T ss_pred             eccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccce
Confidence            99999999999999987654 456799999999999999999999999999999999999999876543  457777888


Q ss_pred             EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeE
Q 003271          736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETL  790 (835)
Q Consensus       736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~-V~sv~fspdg~~L~sgs~dg~I  790 (835)
                      .+++|+ ||.|++||+...   ..+..+..+... +.++.++|.-..++++...+.+
T Consensus       241 hV~sgSEDG~Vy~wdLvd~---~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~~~~  294 (307)
T KOG0316|consen  241 HVFSGSEDGKVYFWDLVDE---TQISKLSVVSTVIVTDLSCHPTMDDFITATGHGDL  294 (307)
T ss_pred             eEEeccCCceEEEEEeccc---eeeeeeccCCceeEEeeecccCccceeEecCCcee
Confidence            999999 999999999887   677778777777 8999999998888877765543

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=5.8e-27  Score=244.39  Aligned_cols=268  Identities=21%  Similarity=0.346  Sum_probs=227.0

Q ss_pred             CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC---EEEEEeCCCeEE
Q 003271          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAV  580 (835)
Q Consensus       504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~---~Lasgs~Dg~I~  580 (835)
                      ...+++.+|++|+.+++|..                    .......+.||+++|.+++|.....   .|++++.|.+++
T Consensus       113 ~~~~~IltgsYDg~~riWd~--------------------~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~  172 (423)
T KOG0313|consen  113 GASKWILTGSYDGTSRIWDL--------------------KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLR  172 (423)
T ss_pred             ccCceEEEeecCCeeEEEec--------------------CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEE
Confidence            34789999999999999932                    2245778899999999888865333   599999999999


Q ss_pred             EEEcCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC------------------------Cce
Q 003271          581 LWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP------------------------DYS  632 (835)
Q Consensus       581 VWd~~t~~~i----~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~------------------------~~~  632 (835)
                      +|..+.++..    ....+|...|-+|...+++..+++|+.|.+|.||+..+.                        +.+
T Consensus       173 Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P  252 (423)
T KOG0313|consen  173 LWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTP  252 (423)
T ss_pred             EEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCc
Confidence            9988876543    344599999999999999999999999999999993211                        124


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~dg~I~IwDl~  710 (835)
                      +..+.+|..+|.++.|++.  ..+++++.|.+|+.||+.++.++..+.+.  ..++.++|....|++|+.|..|++||.+
T Consensus       253 ~vtl~GHt~~Vs~V~w~d~--~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR  330 (423)
T KOG0313|consen  253 LVTLEGHTEPVSSVVWSDA--TVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPR  330 (423)
T ss_pred             eEEecccccceeeEEEcCC--CceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCC
Confidence            5678899999999999984  47889999999999999999988777654  8899999999999999999999999999


Q ss_pred             CC---eEEEEEcCCCCCeEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          711 TQ---VCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       711 t~---~~i~~l~~h~~~I~sl~fspdg~~-Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      ++   -....+.+|.+.|.++.|+|...+ |++++ |+++++||+++..  ..+..+.+|...|.++.|... ..|++|+
T Consensus       331 ~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k--~plydI~~h~DKvl~vdW~~~-~~IvSGG  407 (423)
T KOG0313|consen  331 TGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK--APLYDIAGHNDKVLSVDWNEG-GLIVSGG  407 (423)
T ss_pred             CCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC--CcceeeccCCceEEEEeccCC-ceEEecc
Confidence            75   455688899999999999997765 55566 9999999999873  488899999999999999754 4699999


Q ss_pred             cCCeEEEEEcC
Q 003271          786 CYETLELWNMT  796 (835)
Q Consensus       786 ~dg~I~IwDl~  796 (835)
                      .|.+|+|+...
T Consensus       408 aD~~l~i~~~~  418 (423)
T KOG0313|consen  408 ADNKLRIFKGS  418 (423)
T ss_pred             CcceEEEeccc
Confidence            99999998643

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=1.9e-27  Score=236.53  Aligned_cols=275  Identities=21%  Similarity=0.374  Sum_probs=227.8

Q ss_pred             EEEEEeC--CCCEE-EEE-----eCCCeEEEEEcCCCeEEEEec--cCCCCeEEEEECCC-CCEEEEEECCCeEEEEecC
Q 003271          559 ESCHFSP--DGKLL-ATG-----GHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       559 ~sl~fSp--dg~~L-asg-----s~Dg~I~VWd~~t~~~i~~l~--~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~  627 (835)
                      +++.|||  ++++. |++     ...|++.|.++...+-+..+.  .-.+.+.+|+|+++ .+.+++++.||+++|||+.
T Consensus        12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~   91 (311)
T KOG0277|consen   12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT   91 (311)
T ss_pred             ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence            5788888  34332 222     136889999986444333332  34578999999996 5688999999999999988


Q ss_pred             CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCC-CEEEEEEcCCc
Q 003271          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRL-GRILAAAIENY  703 (835)
Q Consensus       628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~-~~ll~~s~dg~  703 (835)
                      ....++..++.|...|.++.|++..+..+++++.|++|++|+......+.++.++   |....|+|.. +.++.++.|+.
T Consensus        92 ~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~  171 (311)
T KOG0277|consen   92 MPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGT  171 (311)
T ss_pred             CCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCce
Confidence            8888899999999999999999988888999999999999999999999999876   6667899975 66777888999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CE
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PS  780 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~  780 (835)
                      +++||++..-....+..|...|.|+.|+.-. ..|++++ |+.|++||++.-+  ..+.++.+|+-.|..+.|+|.. ..
T Consensus       172 l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r--~pl~eL~gh~~AVRkvk~Sph~~~l  249 (311)
T KOG0277|consen  172 LRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLR--TPLFELNGHGLAVRKVKFSPHHASL  249 (311)
T ss_pred             EEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhcc--ccceeecCCceEEEEEecCcchhhH
Confidence            9999999765555588899999999999854 5666777 9999999999875  5788899999999999999976 46


Q ss_pred             EEEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003271          781 LLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK  835 (835)
Q Consensus       781 L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~sp-dg~~LaSgs~DG~V~IWd  835 (835)
                      |++++.|-+++|||.......  +...|..-|..+.|++ +..++|+++.|+.++||+
T Consensus       250 LaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~  307 (311)
T KOG0277|consen  250 LASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWN  307 (311)
T ss_pred             hhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeec
Confidence            778888889999998855533  6667888999999998 556999999999999996

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=3.2e-27  Score=268.57  Aligned_cols=246  Identities=21%  Similarity=0.325  Sum_probs=202.5

Q ss_pred             eEEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-------------------------------------
Q 003271          545 FTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------------------------------------  586 (835)
Q Consensus       545 ~~~i~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-------------------------------------  586 (835)
                      ......+. +|.+.|+|+.||+||+|||+||.|+.|+||.+..                                     
T Consensus       256 l~~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~  335 (712)
T KOG0283|consen  256 LTVVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSR  335 (712)
T ss_pred             eEEeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccc
Confidence            34445566 9999999999999999999999999999997543                                     


Q ss_pred             -----------------------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe
Q 003271          587 -----------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (835)
Q Consensus       587 -----------------------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V  643 (835)
                                             .+++..+.+|.+.|.+|.|+.+ .+|++++.|.+|++|++.... ++..|. |.+.|
T Consensus       336 ~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~-CL~~F~-HndfV  412 (712)
T KOG0283|consen  336 TSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKE-CLKVFS-HNDFV  412 (712)
T ss_pred             ccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcc-eeeEEe-cCCee
Confidence                                   0112334689999999999976 589999999999999999655 577776 99999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-
Q 003271          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-  720 (835)
Q Consensus       644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-  720 (835)
                      +||+|+|.++++|++|+-||.|+||++...+.+.-..  .-|++++|.|+|...++|+.+|.+++|+....+....+.- 
T Consensus       413 TcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~  492 (712)
T KOG0283|consen  413 TCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIR  492 (712)
T ss_pred             EEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEe
Confidence            9999999989999999999999999999887765443  4599999999999999999999999999998766554321 


Q ss_pred             -C------CCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCcceEEEeecCC--CceEEEEEeCCCCEEEEEEcCCe
Q 003271          721 -H------KNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCYET  789 (835)
Q Consensus       721 -h------~~~I~sl~fspdg--~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~--~~V~sv~fspdg~~L~sgs~dg~  789 (835)
                       |      ...|+.+.|.|..  ++|++..|..|+|||.+..   ..+..+++..  ..-....|+.||++|++++.|..
T Consensus       493 ~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~---~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~  569 (712)
T KOG0283|consen  493 LHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDK---DLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSW  569 (712)
T ss_pred             eccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccch---hhhhhhcccccCCcceeeeEccCCCEEEEeecCce
Confidence             1      2279999998754  3666666999999999776   5555555433  33466789999999999999999


Q ss_pred             EEEEEcC
Q 003271          790 LELWNMT  796 (835)
Q Consensus       790 I~IwDl~  796 (835)
                      |+||++.
T Consensus       570 VYiW~~~  576 (712)
T KOG0283|consen  570 VYIWKND  576 (712)
T ss_pred             EEEEeCC
Confidence            9999973

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.96  E-value=5.4e-28  Score=258.95  Aligned_cols=274  Identities=18%  Similarity=0.306  Sum_probs=233.5

Q ss_pred             ccCccccC-CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeC
Q 003271          497 SAPNQLTD-MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH  575 (835)
Q Consensus       497 s~~~~~~~-~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~  575 (835)
                      ++...+-. ...++.+++.|+.|++|..-++                  ...++++.+|..+|.+++|+.+|..+++++.
T Consensus       217 vsai~~fp~~~hLlLS~gmD~~vklW~vy~~------------------~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sf  278 (503)
T KOG0282|consen  217 VSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD------------------RRCLRTFKGHRKPVRDASFNNCGTSFLSASF  278 (503)
T ss_pred             cchhhhccceeeEEEecCCCceEEEEEEecC------------------cceehhhhcchhhhhhhhccccCCeeeeeec
Confidence            33444444 5679999999999999944332                  2468889999999999999999999999999


Q ss_pred             CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~  654 (835)
                      |+.|++||+++|+++..+. -...++|+.|+|++ +.|++|+.|+.|+.||+++++. +..+..|-+.|..+.|-+++..
T Consensus       279 D~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kv-vqeYd~hLg~i~~i~F~~~g~r  356 (503)
T KOG0282|consen  279 DRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKV-VQEYDRHLGAILDITFVDEGRR  356 (503)
T ss_pred             ceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHH-HHHHHhhhhheeeeEEccCCce
Confidence            9999999999999999885 34578999999998 8899999999999999999874 7888899999999999999875


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCC---eEEEEEcCCC--CCe
Q 003271          655 LLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQ---VCRLKLQGHK--NQV  725 (835)
Q Consensus       655 ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~--~~I  725 (835)
                       +++.++|+.++||+.+....+..+.    ....++..+|.++++++-+.|+.|.+|.+...   .....+++|.  +.-
T Consensus       357 -FissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  357 -FISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             -EeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence             5588889999999999877665443    33678999999999999999999999987643   2334566765  345


Q ss_pred             EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 003271          726 HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN  794 (835)
Q Consensus       726 ~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwD  794 (835)
                      ..|.|||||.+|++|+ ||.+.+||.++.   +.+..+..|...+..+.|+|.. ..+++++.+|.|++||
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~---kl~~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTT---KLVSKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD  503 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechhh---hhhhccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence            6789999999999999 999999999988   7888899999999999999976 4688899999999996

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.96  E-value=2.5e-28  Score=252.99  Aligned_cols=278  Identities=17%  Similarity=0.310  Sum_probs=235.1

Q ss_pred             EEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          547 EFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      -+..+.||.+.|.|++=+|.. ..+|+|+.||.|+|||+....+..++..|.+.|..|++..  ..+++++.|.+|+.|.
T Consensus        58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc--cceEEecCCcceeeee
Confidence            456778999999999999976 6799999999999999999999999999999999999976  6899999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEE-cC
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAA-IE  701 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s-~d  701 (835)
                      ++.+  +++++.+ .+.+..|+-+..+ ..+++|+.  .|.|||.....++..+.-   .+.++.|+|....|++++ .|
T Consensus       136 ~~~~--p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sD  209 (433)
T KOG0268|consen  136 IDGP--PLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASD  209 (433)
T ss_pred             ccCC--cceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccceeecCCCceeEEecCCCcchheeeeccC
Confidence            8864  4566554 3556777766553 47778865  789999988888877763   378999999887666655 89


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271          702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~  780 (835)
                      +.|.+||++...++..+. -...-..|||+|.+..+++++ |..++.||++...  ..+....+|.+.|.++.|+|.|..
T Consensus       210 rsIvLyD~R~~~Pl~KVi-~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~--~p~~v~~dhvsAV~dVdfsptG~E  286 (433)
T KOG0268|consen  210 RSIVLYDLRQASPLKKVI-LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLS--RPLNVHKDHVSAVMDVDFSPTGQE  286 (433)
T ss_pred             CceEEEecccCCccceee-eeccccceecCccccceeeccccccceehhhhhhc--ccchhhcccceeEEEeccCCCcch
Confidence            999999999998887665 345567899999777777787 8999999999764  577778899999999999999999


Q ss_pred             EEEEEcCCeEEEEEcCCCcEEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          781 LLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       781 L~sgs~dg~I~IwDl~~~~~~~l~--~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +++|+.|.+|+||.++.+....+.  .--..|.|+.|+.|.++|++|++|+.|++|+
T Consensus       287 fvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWk  343 (433)
T KOG0268|consen  287 FVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWK  343 (433)
T ss_pred             hccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeee
Confidence            999999999999999887765322  2335699999999999999999999999996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.3e-27  Score=251.87  Aligned_cols=274  Identities=19%  Similarity=0.281  Sum_probs=240.4

Q ss_pred             CCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          555 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      .+.|.+++|+|...+ +|+.+ .-.|.||+..+....+++....+.|++++|..||++|++|...|.|+|||+.+ +..+
T Consensus        26 ~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~-r~iL  103 (487)
T KOG0310|consen   26 HNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRKTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS-RVIL  103 (487)
T ss_pred             cCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhhhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc-HHHH
Confidence            457999999996554 44443 46899999999888888888889999999999999999999999999999554 5568


Q ss_pred             EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCC-EEEEEEcCCcEEEEEC
Q 003271          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLG-RILAAAIENYISILDV  709 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~-~ll~~s~dg~I~IwDl  709 (835)
                      +.+.+|..+|..+.|+|.++.++++|++|+.+++||+.+......+.++   +.+.+|+|..+ .+++|++||.|++||+
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            9999999999999999999999999999999999999998865455544   88999999866 6778999999999999


Q ss_pred             CCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271          710 ETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE  788 (835)
Q Consensus       710 ~t~-~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg  788 (835)
                      +.. ..+.++. |..+|..+++-|.|..|++++...|+|||+.++.  ..+.....|...|+|+++..++..|++++-|+
T Consensus       184 R~~~~~v~eln-hg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~--qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~  260 (487)
T KOG0310|consen  184 RSLTSRVVELN-HGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG--QLLTSMFNHNKTVTCLRLASDSTRLLSGSLDR  260 (487)
T ss_pred             ccCCceeEEec-CCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc--eehhhhhcccceEEEEEeecCCceEeeccccc
Confidence            987 6666665 9999999999999999999999999999999773  45555556899999999999999999999999


Q ss_pred             eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          789 TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       789 ~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .|++||+.+.+.+.-....++|.+|+++|++..++.|..||.+.+
T Consensus       261 ~VKVfd~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~  305 (487)
T KOG0310|consen  261 HVKVFDTTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSI  305 (487)
T ss_pred             ceEEEEccceEEEEeeecccceeeEEecCCCceEEEecccceeee
Confidence            999999999998877778899999999999999999999998754

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.95  E-value=8.1e-28  Score=245.02  Aligned_cols=271  Identities=20%  Similarity=0.338  Sum_probs=233.2

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      .++++||.|+-|++|....+...+           ...+..-..+--|.++|.|++||.|...||+|+.||.|+||.+.+
T Consensus       226 qyLvsgSvDGFiEVWny~~GKlrK-----------DLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t  294 (508)
T KOG0275|consen  226 QYLVSGSVDGFIEVWNYTTGKLRK-----------DLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET  294 (508)
T ss_pred             ceEeeccccceeeeehhccchhhh-----------hhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence            799999999999999665553322           222222334456788999999999999999999999999999999


Q ss_pred             CeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          587 FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       587 ~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      |.+++.|. .|+..|+|+.|+.|+..+++++.|.+|+|.-+.+++. ++.+.+|.+.|+...|.++|.+++ +++.||+|
T Consensus       295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~-LKEfrGHsSyvn~a~ft~dG~~ii-saSsDgtv  372 (508)
T KOG0275|consen  295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKC-LKEFRGHSSYVNEATFTDDGHHII-SASSDGTV  372 (508)
T ss_pred             chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchh-HHHhcCccccccceEEcCCCCeEE-EecCCccE
Confidence            99999996 8999999999999999999999999999999999875 899999999999999999988555 89999999


Q ss_pred             EEEECCCCeeeeEeecC-----ceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC---CCCCeEEEEEcCCCCE
Q 003271          666 RYWSINNGSCAGVFKSG-----ATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEY  736 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~~~-----i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~fspdg~~  736 (835)
                      ++|+.++.+|+.+|+..     +..+..-|.+ ..++++...++|+|.++. +..++.+..   ..+...+++.+|.|.+
T Consensus       373 kvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGew  451 (508)
T KOG0275|consen  373 KVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEW  451 (508)
T ss_pred             EEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcE
Confidence            99999999999988743     5666666654 678888888999999986 566666653   3456778889999999


Q ss_pred             EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      +++.+ |+.+++|.+.++   ..-+++..|...+..++-+|..+.|++-+.||.+++|.
T Consensus       452 iYcigED~vlYCF~~~sG---~LE~tl~VhEkdvIGl~HHPHqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  452 IYCIGEDGVLYCFSVLSG---KLERTLPVHEKDVIGLTHHPHQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             EEEEccCcEEEEEEeecC---ceeeeeecccccccccccCcccchhhhhcccchhhhcC
Confidence            99988 999999999998   77788888999999999999999999999999999995

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=5.6e-27  Score=251.85  Aligned_cols=289  Identities=17%  Similarity=0.249  Sum_probs=232.7

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe----EEEEe-ccCCCCeEEEEECCCCCEEEEEECC
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT----VKSTL-EEHTQWITDVRFSPSLSRLATSSAD  618 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~----~i~~l-~~h~~~V~sv~fspdg~~Latgs~D  618 (835)
                      +......+++|+..|.++++.|.|-.|++|+.|.+|++||+....    ..+.+ ......|.++.|++.+..|++.+..
T Consensus       156 P~shEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~  235 (641)
T KOG0772|consen  156 PGSHEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGS  235 (641)
T ss_pred             CccceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecC
Confidence            344566789999999999999999999999999999999986432    12222 2234479999999999999999888


Q ss_pred             CeEEEEecCCCCce-----------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEee------
Q 003271          619 RTVRVWDTENPDYS-----------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK------  680 (835)
Q Consensus       619 g~I~IWDl~t~~~~-----------~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~~------  680 (835)
                      ..++|+|-+.....           +...++|...++|.+|+|..+..|++|+.||++++||++..+ .+.+++      
T Consensus       236 aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g  315 (641)
T KOG0772|consen  236 AQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGG  315 (641)
T ss_pred             cceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCC
Confidence            89999997643321           123568999999999999999999999999999999997654 333333      


Q ss_pred             --cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe--EE-EEEcCCCC--CeEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003271          681 --SGATQMRFQPRLGRILAAAIENYISILDVETQV--CR-LKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGS  752 (835)
Q Consensus       681 --~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i-~~l~~h~~--~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t  752 (835)
                        ..++.++|++++..|++|+.||.|.+|+.....  +. +.-..|..  .|+||.|++||++|++-+ |+++++||++.
T Consensus       316 ~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq  395 (641)
T KOG0772|consen  316 KRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQ  395 (641)
T ss_pred             cccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccc
Confidence              337889999999999999999999999986542  22 22345776  899999999999999988 99999999998


Q ss_pred             CCCcceEEEeec--CCCceEEEEEeCCCCEEEEEEc------CCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003271          753 GSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA  823 (835)
Q Consensus       753 ~~~~~~i~~l~~--~~~~V~sv~fspdg~~L~sgs~------dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~La  823 (835)
                      .+  +++....+  ....-+.|+|+|+.+.|++|+.      .+.+++||..+...+ ++.-....|..+.|+|.=+.|+
T Consensus       396 ~k--kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~  473 (641)
T KOG0772|consen  396 FK--KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIF  473 (641)
T ss_pred             cc--cchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhhee
Confidence            75  44444433  3445688999999999999875      358999999888877 5555577899999999988899


Q ss_pred             EEECCCcEEEe
Q 003271          824 SASHDKCVKIW  834 (835)
Q Consensus       824 Sgs~DG~V~IW  834 (835)
                      .|+.||+++||
T Consensus       474 ~gsgdG~~~vy  484 (641)
T KOG0772|consen  474 AGSGDGTAHVY  484 (641)
T ss_pred             eecCCCceEEE
Confidence            99999999986

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=3.2e-27  Score=247.94  Aligned_cols=275  Identities=20%  Similarity=0.313  Sum_probs=231.2

Q ss_pred             cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003271          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (835)
Q Consensus       501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~  580 (835)
                      .+.....++|+++.|.+.-+|....+                ..+...+++.+|..+|..+.||||.++|++|+.|..+.
T Consensus       231 ~FS~nGkyLAsaSkD~Taiiw~v~~d----------------~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~  294 (519)
T KOG0293|consen  231 QFSHNGKYLASASKDSTAIIWIVVYD----------------VHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLS  294 (519)
T ss_pred             EEcCCCeeEeeccCCceEEEEEEecC----------------cceeeeeeeecccCceEEEEECCCCCeEEecCchHhee
Confidence            34444589999999999999943322                12667889999999999999999999999999999999


Q ss_pred             EEEcCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEE
Q 003271          581 LWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       581 VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~s  658 (835)
                      +||+.++.....+. +|...+.+++|.|||..+++|+.|++|..||++...  +....+- ...|.+++..+||+.++++
T Consensus       295 lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~--~~~W~gvr~~~v~dlait~Dgk~vl~v  372 (519)
T KOG0293|consen  295 LWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI--LGNWEGVRDPKVHDLAITYDGKYVLLV  372 (519)
T ss_pred             eccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch--hhcccccccceeEEEEEcCCCcEEEEE
Confidence            99999999987774 346789999999999999999999999999998643  3333332 2569999999999977755


Q ss_pred             EeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC--eEEEEEcC-C
Q 003271          659 CDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--VHSVCWNT-S  733 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~--I~sl~fsp-d  733 (835)
                      + .|..|++|+.++......+  ..++++++++.++.++++.-.+..|.+||++....+..+.||...  |..-||.- +
T Consensus       373 ~-~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~  451 (519)
T KOG0293|consen  373 T-VDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGN  451 (519)
T ss_pred             e-cccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCC
Confidence            5 6999999999887666444  356999999999999999999999999999988888899988754  33445644 4


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCC
Q 003271          734 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE  797 (835)
Q Consensus       734 g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~  797 (835)
                      ..++++|+ |+.|+||+..++   +.+.++.+|...|++++|+|..+ .+++++.||+|+||....
T Consensus       452 ~~fiaSGSED~kvyIWhr~sg---kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~  514 (519)
T KOG0293|consen  452 DKFIASGSEDSKVYIWHRISG---KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD  514 (519)
T ss_pred             cceEEecCCCceEEEEEccCC---ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence            58999999 999999999998   89999999999999999999775 578889999999997653

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.1e-26  Score=259.68  Aligned_cols=271  Identities=21%  Similarity=0.385  Sum_probs=230.6

Q ss_pred             cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003271          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (835)
Q Consensus       501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~  580 (835)
                      ++.+...++.++-..+.|.+|+..                   -...+..+.+|.++|..++|+|+..++++|+.|.+|+
T Consensus        16 sFHP~rPwILtslHsG~IQlWDYR-------------------M~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIk   76 (1202)
T KOG0292|consen   16 SFHPKRPWILTSLHSGVIQLWDYR-------------------MGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIK   76 (1202)
T ss_pred             ecCCCCCEEEEeecCceeeeehhh-------------------hhhHHhhhhccCCccceeeecCCCCeEEecCCccEEE
Confidence            456666789999999999999331                   1234556789999999999999999999999999999


Q ss_pred             EEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       581 VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                      ||+.++.+++.++.+|-+.|..+.|++.-.+|+++|.|-+|+||+..+.+ ++..+.+|+..|+|..|+|.. .++++++
T Consensus        77 VWnYk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~-~iavltGHnHYVMcAqFhptE-DlIVSaS  154 (1202)
T KOG0292|consen   77 VWNYKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRK-CIAVLTGHNHYVMCAQFHPTE-DLIVSAS  154 (1202)
T ss_pred             EEecccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCc-eEEEEecCceEEEeeccCCcc-ceEEEec
Confidence            99999999999999999999999999999999999999999999999866 599999999999999999985 4888999


Q ss_pred             CCCcEEEEECCCCeee-----------------------------eEee---cCceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271          661 NNSEIRYWSINNGSCA-----------------------------GVFK---SGATQMRFQPRLGRILAAAIENYISILD  708 (835)
Q Consensus       661 ~Dg~I~iwDl~s~~~~-----------------------------~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwD  708 (835)
                      -|-+|++||+..-+..                             ..+.   -++.-++|+|.-..|++|+.|..|++|.
T Consensus       155 LDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWr  234 (1202)
T KOG0292|consen  155 LDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWR  234 (1202)
T ss_pred             ccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEE
Confidence            9999999998532110                             1111   2377889999999999999999999999


Q ss_pred             CCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          709 VETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       709 l~t~~--~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      +...+  .+.+..+|.+.|.|+-|+|..++|++.+ |++|+|||+...   ..+.++.......+.++.+|..+ |++++
T Consensus       235 mnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR---t~v~tfrrendRFW~laahP~lN-LfAAg  310 (1202)
T KOG0292|consen  235 MNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR---TSVQTFRRENDRFWILAAHPELN-LFAAG  310 (1202)
T ss_pred             eccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc---cceeeeeccCCeEEEEEecCCcc-eeeee
Confidence            87543  3556789999999999999999999998 999999999877   78888888889999999999998 45555


Q ss_pred             cCCeEEEEEcC
Q 003271          786 CYETLELWNMT  796 (835)
Q Consensus       786 ~dg~I~IwDl~  796 (835)
                      .|+.+.||.++
T Consensus       311 HDsGm~VFkle  321 (1202)
T KOG0292|consen  311 HDSGMIVFKLE  321 (1202)
T ss_pred             cCCceEEEEEc
Confidence            55556666654

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.9e-26  Score=267.97  Aligned_cols=279  Identities=20%  Similarity=0.299  Sum_probs=236.6

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEe--CCCeEEEEEcCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEEC
Q 003271          552 PASTSKVESCHFSPDGKLLATGG--HDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t------------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~  617 (835)
                      ..+...|.+++.+|||..+|||+  .|+.++||+.+.            .+.+.....|.+.|+|+.|++||.+||+|++
T Consensus        10 ~H~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSD   89 (942)
T KOG0973|consen   10 NHNEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSD   89 (942)
T ss_pred             ccCCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccC
Confidence            34566799999999999999999  999999998642            2344566789999999999999999999999


Q ss_pred             CCeEEEEecCC----CC-------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee
Q 003271          618 DRTVRVWDTEN----PD-------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (835)
Q Consensus       618 Dg~I~IWDl~t----~~-------------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~  680 (835)
                      |+.|.||+...    ..             .++..+.+|...|..++|+|++. ++++++.|++|.+||..+.+++..+.
T Consensus        90 D~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~-~lvS~s~DnsViiwn~~tF~~~~vl~  168 (942)
T KOG0973|consen   90 DRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS-LLVSVSLDNSVIIWNAKTFELLKVLR  168 (942)
T ss_pred             cceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc-EEEEecccceEEEEccccceeeeeee
Confidence            99999999872    00             24677889999999999999865 88899999999999999999888887


Q ss_pred             cC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC------CCCeEEEEEcCCCCEEEEEe--CC---eEE
Q 003271          681 SG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVS--DE---LVR  746 (835)
Q Consensus       681 ~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h------~~~I~sl~fspdg~~Lasgs--Dg---~I~  746 (835)
                      ++   +..+.|+|-|.+|++-+.|++|+||++.+..+.+.+.++      ...+..+.|+|||.+|++..  .+   ++.
T Consensus       169 ~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~  248 (942)
T KOG0973|consen  169 GHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIA  248 (942)
T ss_pred             cccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeE
Confidence            55   889999999999999999999999998887777776653      33578899999999999876  33   788


Q ss_pred             EEEcCCCCCcceEEEeecCCCceEEEEEeCC-----CC------------EEEEEEcCCeEEEEEcCCCcEEE--eccCC
Q 003271          747 VWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FP------------SLLVIGCYETLELWNMTENKTLT--LSAHD  807 (835)
Q Consensus       747 IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd-----g~------------~L~sgs~dg~I~IwDl~~~~~~~--l~~h~  807 (835)
                      |.+-.+.   +.-..+-+|..++.++.|+|.     ..            .+++|+.|++|.||.....+++.  ..-..
T Consensus       249 IieR~tW---k~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~  325 (942)
T KOG0973|consen  249 IIERGTW---KVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFN  325 (942)
T ss_pred             EEecCCc---eeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhc
Confidence            8887665   667788899999999999873     11            57888999999999997777662  22345


Q ss_pred             CCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          808 KLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       808 ~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ..|.+++|+|||-.|+.|+.||+|.+.
T Consensus       326 ~SI~DmsWspdG~~LfacS~DGtV~~i  352 (942)
T KOG0973|consen  326 KSIVDMSWSPDGFSLFACSLDGTVALI  352 (942)
T ss_pred             CceeeeeEcCCCCeEEEEecCCeEEEE
Confidence            789999999999999999999999875

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=2.8e-26  Score=264.02  Aligned_cols=268  Identities=25%  Similarity=0.437  Sum_probs=237.6

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~-l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~  631 (835)
                      .|...|.|..|.  ..++++++.|.+|++||..++..+.. +.+|.+.|++++|..-+.+|++|+.|.+++|||+.++. 
T Consensus       206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~-  282 (537)
T KOG0274|consen  206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE-  282 (537)
T ss_pred             cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc-
Confidence            467778899998  45899999999999999999999988 99999999999998778899999999999999988876 


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILD  708 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwD  708 (835)
                      +...+.+|.+.|.++...+.   ++++|+.|.+|++|++.++.++..+.++   |.++.++  ++.+++|+.|+.|.+||
T Consensus       283 C~~~l~gh~stv~~~~~~~~---~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~  357 (537)
T KOG0274|consen  283 CTHSLQGHTSSVRCLTIDPF---LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD  357 (537)
T ss_pred             EEEEecCCCceEEEEEccCc---eEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence            58999999999999998744   7788999999999999999999888743   6666666  89999999999999999


Q ss_pred             CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          709 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       709 l~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      +.++++++.+.+|...|.++.+... .++++|+ |++|++||+++..  +|+.++.+|...+..+.+  .+.+|++++.|
T Consensus       358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~--~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD  432 (537)
T KOG0274|consen  358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKR--KCIHTLQGHTSLVSSLLL--RDNFLVSSSAD  432 (537)
T ss_pred             hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchh--hhhhhhcCCccccccccc--ccceeEecccc
Confidence            9999999999999999999988765 7888888 9999999998864  688999999988866655  56689999999


Q ss_pred             CeEEEEEcCCCcEE-Eecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          788 ETLELWNMTENKTL-TLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       788 g~I~IwDl~~~~~~-~l~~-h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++|++||..+++++ .+.+ |...|..+++.  ...+++++.||++++||
T Consensus       433 ~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  433 GTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             ccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            99999999999988 5555 56888888876  46789999999999997

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=2.4e-25  Score=257.26  Aligned_cols=247  Identities=16%  Similarity=0.212  Sum_probs=199.9

Q ss_pred             EeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCc-------eeEEeecCCCCeE
Q 003271          573 GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVM  644 (835)
Q Consensus       573 gs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~-------~~~~~~~h~~~V~  644 (835)
                      |+.++.|++|+......+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.+...       ++..+.+|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            567889999999888888899999999999999997 78999999999999999976431       2346788999999


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK  722 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~  722 (835)
                      +++|+|++..++++++.|+.|++||+++++.+..+.  ..+.+++|++++..|++++.|+.|+|||+++++.+..+.+|.
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~  209 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHD  209 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEeccc
Confidence            999999988888899999999999999988765553  458999999999999999999999999999999999999998


Q ss_pred             CCeEEE-----EEcCCCCEEEEEe-CC----eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271          723 NQVHSV-----CWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  792 (835)
Q Consensus       723 ~~I~sl-----~fspdg~~Lasgs-Dg----~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I  792 (835)
                      +.+.+.     .|++++.+|++++ |+    .|+|||++..........+..+.+.+......+++.++++|+.|+.|++
T Consensus       210 g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~  289 (568)
T PTZ00420        210 GGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRY  289 (568)
T ss_pred             CCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEE
Confidence            765432     3458888888877 53    7999999964322222233333344444444566888999999999999


Q ss_pred             EEcCCCcEEEe--ccCCCCeeEEEEeCCC
Q 003271          793 WNMTENKTLTL--SAHDKLVSSLAASTVN  819 (835)
Q Consensus       793 wDl~~~~~~~l--~~h~~~V~~la~spdg  819 (835)
                      |++..+....+  ..+..++.+++|.|+.
T Consensus       290 ~e~~~~~~~~l~~~~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        290 YQHSLGSIRKVNEYKSCSPFRSFGFLPKQ  318 (568)
T ss_pred             EEccCCcEEeecccccCCCccceEEcccc
Confidence            99988765433  3466788999999965

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.95  E-value=2.6e-27  Score=234.72  Aligned_cols=273  Identities=19%  Similarity=0.219  Sum_probs=236.1

Q ss_pred             cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (835)
Q Consensus       503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW  582 (835)
                      .+..-|+.+++.|+.--+-                   .|.+..-+.++.||.+.|++.+++.+....|+++.|-+.+||
T Consensus        26 tp~g~flisa~kd~~pmlr-------------------~g~tgdwigtfeghkgavw~~~l~~na~~aasaaadftakvw   86 (334)
T KOG0278|consen   26 TPDGYFLISASKDGKPMLR-------------------NGDTGDWIGTFEGHKGAVWSATLNKNATRAASAAADFTAKVW   86 (334)
T ss_pred             CCCceEEEEeccCCCchhc-------------------cCCCCCcEEeeeccCcceeeeecCchhhhhhhhcccchhhhh
Confidence            4455677777776553322                   233445578899999999999999999899999999999999


Q ss_pred             EcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       583 d~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      |.-++..+.++ .|...|.+++|+.|.++|+||+.+..++|||+...+.+...+.+|.+.|..+.|+...+.+| +..+|
T Consensus        87 ~a~tgdelhsf-~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iL-SSadd  164 (334)
T KOG0278|consen   87 DAVTGDELHSF-EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCIL-SSADD  164 (334)
T ss_pred             hhhhhhhhhhh-hhhheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEE-eeccC
Confidence            99999999998 48889999999999999999999999999999999888899999999999999998766454 66889


Q ss_pred             CcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271          663 SEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       663 g~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg  740 (835)
                      ++||+||.++++.+..+.  .+++++.++++|. +++.+..+.|.+||..+...++.++ -...|.+...+|+..++++|
T Consensus       165 ~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~-ilTia~gssV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaG  242 (334)
T KOG0278|consen  165 KTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGR-ILTIAYGSSVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAG  242 (334)
T ss_pred             CceEEEEeccCcEEEEEecCCCCcceeeccCCC-EEEEecCceeEEeccccccceeecc-CccccccccccCCCceEEec
Confidence            999999999999987764  6799999999965 5566677899999999999888877 56789999999999988888


Q ss_pred             e-CCeEEEEEcCCCCCcceEEE-eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          741 S-DELVRVWSIGSGSKGECIHE-LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       741 s-Dg~I~IwDl~t~~~~~~i~~-l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      + |..++.||+.++   ..+.. ..+|.++|.++.|+|+|...++|+.||+|+||.+..++..
T Consensus       243 ged~~~~kfDy~Tg---eEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  243 GEDFKVYKFDYNTG---EEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKTY  302 (334)
T ss_pred             CcceEEEEEeccCC---ceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCCCch
Confidence            8 999999999999   44545 4889999999999999999999999999999998766544

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.95  E-value=2.8e-26  Score=242.46  Aligned_cols=275  Identities=24%  Similarity=0.367  Sum_probs=241.7

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      ...|+++...+....+++|+.|..+.++|......+..+++|...|+.+.|+++...+++++.|..|+||...... +..
T Consensus       219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s-~~~  297 (506)
T KOG0289|consen  219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS-EPT  297 (506)
T ss_pred             CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc-Ccc
Confidence            3458888888887799999999999999999999999999999999999999999999999999999999998766 366


Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-----CceEEEEecCCCEEEEEEcCCcEEEEEC
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-----GATQMRFQPRLGRILAAAIENYISILDV  709 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-----~i~~l~fsp~~~~ll~~s~dg~I~IwDl  709 (835)
                      ....|..+|+.+..+|.|++ |++++.|+++.+.|++++.++.....     .+++.+|+|||..|.+|+.|+.|+|||+
T Consensus       298 ~~~~h~~~V~~ls~h~tgeY-llsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdl  376 (506)
T KOG0289|consen  298 SSRPHEEPVTGLSLHPTGEY-LLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDL  376 (506)
T ss_pred             ccccccccceeeeeccCCcE-EEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEc
Confidence            77789999999999999885 45889999999999999998877654     3889999999999999999999999999


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcC
Q 003271          710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       710 ~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      .....+..|.+|.++|..+.|+.+|.||++++ |+.|++||++..+   .+.++.. ....+.++.|.+.|.+|++++.+
T Consensus       377 ks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~---n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~  453 (506)
T KOG0289|consen  377 KSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLK---NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSD  453 (506)
T ss_pred             CCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhc---ccceeeccccccceeEEEcCCCCeEEeecce
Confidence            99999999999999999999999999999999 7789999999874   3333332 23479999999999999999877


Q ss_pred             CeEEEEEcCCCc--EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          788 ETLELWNMTENK--TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       788 g~I~IwDl~~~~--~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      =.|++++-.+..  ++ .+..|.+..+++.|.....++++++.|..++|+
T Consensus       454 l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  454 LQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             eEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEe
Confidence            777777755443  33 566788899999999999999999999999886

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=4.2e-26  Score=253.97  Aligned_cols=266  Identities=22%  Similarity=0.387  Sum_probs=230.5

Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec-
Q 003271          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG-  638 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~-  638 (835)
                      -++|+. ...||+|. ...|++|+..+++.......+.+.|+++.|+++|.+|++|..+|.|.|||..+.+. ++.+.+ 
T Consensus       182 lldWss-~n~laVal-g~~vylW~~~s~~v~~l~~~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~-~~~~~~~  258 (484)
T KOG0305|consen  182 LLDWSS-ANVLAVAL-GQSVYLWSASSGSVTELCSFGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKK-TRTLRGS  258 (484)
T ss_pred             Hhhccc-CCeEEEEe-cceEEEEecCCCceEEeEecCCCceEEEEECCCCCEEEEeecCCeEEEEehhhccc-cccccCC
Confidence            357773 44677665 46899999999987766666689999999999999999999999999999998765 666666 


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSGATQMRFQPRLGRILAAAIENYISILDVETQVC  714 (835)
Q Consensus       639 h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~  714 (835)
                      |...|.+++|.   ..++.+|+.|+.|.++|++..+....    +...++.+.|++++.+++.|+.|+.+.|||.....+
T Consensus       259 h~~rvg~laW~---~~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p  335 (484)
T KOG0305|consen  259 HASRVGSLAWN---SSVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP  335 (484)
T ss_pred             cCceeEEEecc---CceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc
Confidence            99999999999   34888999999999999998765443    345589999999999999999999999999998999


Q ss_pred             EEEEcCCCCCeEEEEEcCC-CCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc--CC
Q 003271          715 RLKLQGHKNQVHSVCWNTS-GEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YE  788 (835)
Q Consensus       715 i~~l~~h~~~I~sl~fspd-g~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~--dg  788 (835)
                      ...+..|...|..++|+|- ..+||+|+   |++|++||..++   ..+..+. ....|+++.|++..+.|+++-.  ++
T Consensus       336 ~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g---~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n  411 (484)
T KOG0305|consen  336 KFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTG---ARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSEN  411 (484)
T ss_pred             cEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCC---cEecccc-cCCceeeEEEcCCCCEEEEecCCCCC
Confidence            9999999999999999994 56777766   999999999988   5665554 4788999999999988887655  45


Q ss_pred             eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          789 TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       789 ~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|.||++.+.+.+ .+.+|...|..++++|||..|++|+.|.++++|+
T Consensus       412 ~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  412 QITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             cEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEecc
Confidence            8999999998777 7889999999999999999999999999999996

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=8.4e-26  Score=229.79  Aligned_cols=271  Identities=18%  Similarity=0.298  Sum_probs=224.2

Q ss_pred             cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC-CeEE-EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          552 PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       552 ~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t-~~~i-~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      ..-.+.|.+++||| ...+|++|+.|++|++|++.. +..+ +....|.++|.+++|+.||..+++|+.|+.+++||+.+
T Consensus        24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S  103 (347)
T KOG0647|consen   24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLAS  103 (347)
T ss_pred             CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccC
Confidence            45667899999999 555677999999999999976 3433 44567999999999999999999999999999999999


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISIL  707 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~Iw  707 (835)
                      +.  +..+..|..+|.++.|-+... .+|++|+.|++|++||++....+..+..+-.+.+.+-....+++++.+..|.+|
T Consensus       104 ~Q--~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy  181 (347)
T KOG0647|consen  104 GQ--VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY  181 (347)
T ss_pred             CC--eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence            85  678888999999999987533 478999999999999999999998888777777766677889999999999999


Q ss_pred             ECCCCeEEEE-Ec-CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC---------CceEEEEEe
Q 003271          708 DVETQVCRLK-LQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG---------NKFHSCVFH  775 (835)
Q Consensus       708 Dl~t~~~i~~-l~-~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~---------~~V~sv~fs  775 (835)
                      +++.+..... .. ..+-.++||+...|....+.|+ +|.+.|..+..+.. +.-.++++|.         ..|++++|+
T Consensus       182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~-~~nFtFkCHR~~~~~~~~VYaVNsi~Fh  260 (347)
T KOG0647|consen  182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNP-KDNFTFKCHRSTNSVNDDVYAVNSIAFH  260 (347)
T ss_pred             EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCc-cCceeEEEeccCCCCCCceEEecceEee
Confidence            9987643322 11 2344678998888888778888 99999999987643 3444555554         247889999


Q ss_pred             CCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003271          776 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  825 (835)
Q Consensus       776 pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSg  825 (835)
                      |....|+++++||++.+||-.....+ ....|..+|++.+|+.+|.++|-+
T Consensus       261 P~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  261 PVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             cccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEEEE
Confidence            99999999999999999998876655 567899999999999999987754

>PTZ00421 coronin; Provisional

Probab=99.95  E-value=4e-25  Score=253.99  Aligned_cols=262  Identities=15%  Similarity=0.218  Sum_probs=208.5

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE-------------EEeccCCCCeEEEEECC-CCCEEEEEECCCeE
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-------------STLEEHTQWITDVRFSP-SLSRLATSSADRTV  621 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i-------------~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I  621 (835)
                      ..|....+++|+..+++++.+..+..|+...+..+             ..+.+|.+.|++++|+| ++.+|++|+.|++|
T Consensus        21 ~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtI  100 (493)
T PTZ00421         21 LNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTI  100 (493)
T ss_pred             eccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEE
Confidence            44566666777666777777777777775443322             13678999999999999 78899999999999


Q ss_pred             EEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCC
Q 003271          622 RVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRL  692 (835)
Q Consensus       622 ~IWDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~  692 (835)
                      +|||+.+..      .++..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+.   ..+.+++|+|++
T Consensus       101 kIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG  180 (493)
T PTZ00421        101 MGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG  180 (493)
T ss_pred             EEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC
Confidence            999997643      24567889999999999999877789999999999999999998877765   348999999999


Q ss_pred             CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC-eEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCcceEEEeec-C
Q 003271          693 GRILAAAIENYISILDVETQVCRLKLQGHKNQ-VHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSC-T  765 (835)
Q Consensus       693 ~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~-I~sl~fspdg~~Lasgs-----Dg~I~IwDl~t~~~~~~i~~l~~-~  765 (835)
                      ..|++++.|+.|+|||+++++.+..+.+|... +..+.|.+++..|++++     |+.|++||+++..  ..+..... .
T Consensus       181 ~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~--~p~~~~~~d~  258 (493)
T PTZ00421        181 SLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA--SPYSTVDLDQ  258 (493)
T ss_pred             CEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC--CceeEeccCC
Confidence            99999999999999999999999999888765 45678888877777643     6899999998764  23333332 2


Q ss_pred             CCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEe--ccCCCCeeEEEEeCCC
Q 003271          766 GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL--SAHDKLVSSLAASTVN  819 (835)
Q Consensus       766 ~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l--~~h~~~V~~la~spdg  819 (835)
                      ...+..+.|++++.+|++++ .|+.|++||+.+++.+..  ..+...+..++|.|.-
T Consensus       259 ~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~  315 (493)
T PTZ00421        259 SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW  315 (493)
T ss_pred             CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence            34566678999999999888 599999999999887633  3455678888888753

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.95  E-value=9.8e-26  Score=259.58  Aligned_cols=263  Identities=23%  Similarity=0.416  Sum_probs=230.8

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEE-ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQL-IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~-l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ++++.+|+.|.++++|                   +......+.. +.||.+.|++++|..-+.+|++|+.|.+++|||+
T Consensus       218 ~~~~~~~s~~~tl~~~-------------------~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~  278 (537)
T KOG0274|consen  218 DGFFKSGSDDSTLHLW-------------------DLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDC  278 (537)
T ss_pred             cCeEEecCCCceeEEe-------------------ecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEec
Confidence            6889999999999999                   2233344555 9999999999999987889999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      .++.+..++.+|.+.|.++...+  .++++|+.|.+|+||++.++. ++..+.+|.+.|.++.++   ..++++|+.|++
T Consensus       279 ~sg~C~~~l~gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~-~l~l~~~h~~~V~~v~~~---~~~lvsgs~d~~  352 (537)
T KOG0274|consen  279 STGECTHSLQGHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGA-CLNLLRGHTGPVNCVQLD---EPLLVSGSYDGT  352 (537)
T ss_pred             CCCcEEEEecCCCceEEEEEccC--ceEeeccCCceEEEEeccCcc-eEEEeccccccEEEEEec---CCEEEEEecCce
Confidence            99999999999999999998854  488889999999999999876 488888899999999998   348889999999


Q ss_pred             EEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271          665 IRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasg  740 (835)
                      |++||+.++++++.+.++   +.++.+... ..++.|+.|+.|++||+++. +++..+.+|..-+.++.+  .+++|+++
T Consensus       353 v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~  429 (537)
T KOG0274|consen  353 VKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSS  429 (537)
T ss_pred             EEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccccc--ccceeEec
Confidence            999999999999999876   566655554 89999999999999999999 999999999998866654  57788888


Q ss_pred             e-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          741 S-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       741 s-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      + |++|++||..++   .++..+.+ +...|..+++.  ...+++++.++.+++||+++++..
T Consensus       430 ~aD~~Ik~WD~~~~---~~~~~~~~~~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~  487 (537)
T KOG0274|consen  430 SADGTIKLWDAEEG---ECLRTLEGRHVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLI  487 (537)
T ss_pred             cccccEEEeecccC---ceeeeeccCCcccEEEeecC--cceEEEEecCCeeEEEecccCchh
Confidence            8 999999999998   78888887 56788888776  467999999999999999999877

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=3e-25  Score=226.89  Aligned_cols=292  Identities=18%  Similarity=0.284  Sum_probs=233.9

Q ss_pred             EEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe
Q 003271          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (835)
Q Consensus       509 l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~  588 (835)
                      +.+|++...|--|......++       ......+++.....+..|.+.|+|++.+  +.|+|+|+.|-+|+|||+.+.+
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~-------~~~s~~~~l~~lF~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~   74 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKG-------CTDSVKPTLKPLFAFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRK   74 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccc-------cccccceeeeccccccccccceeEEEec--ceeEeccCCCCcEEEEeccchh
Confidence            456777777777722222111       1122346677788899999999999995  8899999999999999999999


Q ss_pred             EEEEeccCCCCeEEEEECCCCC--EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          589 VKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       589 ~i~~l~~h~~~V~sv~fspdg~--~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      .+..+-.|.+.|+++.|.++-.  .|++|+.||.|.+|+...- .++..+.+|...|+.++++|.++ +.++.+.|+.++
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W-~~~~slK~H~~~Vt~lsiHPS~K-LALsVg~D~~lr  152 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW-ELLKSLKAHKGQVTDLSIHPSGK-LALSVGGDQVLR  152 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe-EEeeeecccccccceeEecCCCc-eEEEEcCCceee
Confidence            9999999999999999999765  8999999999999999976 46899999999999999999987 666888899999


Q ss_pred             EEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCe
Q 003271          667 YWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL  744 (835)
Q Consensus       667 iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~  744 (835)
                      .||+-.|+.....+  ...+.+.|+|.|.+++++.. +.|-||.+++......+. ....+.|+.|...+.+++.+.|+.
T Consensus       153 ~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~-~~i~i~q~d~A~v~~~i~-~~~r~l~~~~l~~~~L~vG~d~~~  230 (362)
T KOG0294|consen  153 TWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR-NKIDIYQLDNASVFREIE-NPKRILCATFLDGSELLVGGDNEW  230 (362)
T ss_pred             eehhhcCccceeeccCCcceeeEEcCCCCEEEEEec-cEEEEEecccHhHhhhhh-ccccceeeeecCCceEEEecCCce
Confidence            99999887665544  44667999999998888776 568899888766655554 336688888865555554444899


Q ss_pred             EEEEEcCCCCCcceEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEEcCCC-----cEEEeccCCCCeeEEEEe
Q 003271          745 VRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMTEN-----KTLTLSAHDKLVSSLAAS  816 (835)
Q Consensus       745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f--spdg~~L~sgs~dg~I~IwDl~~~-----~~~~l~~h~~~V~~la~s  816 (835)
                      |++||..+.   .+...+.+|...|-.+.+  .|++.+|+++++||.|+|||++..     +.+........++|+...
T Consensus       231 i~~~D~ds~---~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~~k~~~~~l~e~n~~~RltCl~~~  306 (362)
T KOG0294|consen  231 ISLKDTDSD---TPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDMETKKRPTLLAELNTNVRLTCLRVK  306 (362)
T ss_pred             EEEeccCCC---ccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEccccccCCcceeEEeecCCccceeeeh
Confidence            999999886   788999999999999985  567889999999999999999876     334444446677777653

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.94  E-value=1.3e-25  Score=261.04  Aligned_cols=286  Identities=21%  Similarity=0.301  Sum_probs=232.3

Q ss_pred             cCCCcEEEecc--CCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003271          503 TDMDRFVDDGS--LDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (835)
Q Consensus       503 ~~~~~~l~tGs--~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~  580 (835)
                      .+....+++|+  .|+.+++|....-.       +.........-..+.....|.+.|+|+.|++||++||+|+.|+.|.
T Consensus        22 ~pdg~~~aTgGq~~d~~~~iW~~~~vl-------~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~   94 (942)
T KOG0973|consen   22 HPDGVKFATGGQVLDGGIVIWSQDPVL-------DEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDRLVM   94 (942)
T ss_pred             cCCceeEecCCccccccceeecccccc-------chhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcceEE
Confidence            44446788999  99999999221111       0011111112345677889999999999999999999999999999


Q ss_pred             EEEcCC------------------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCC
Q 003271          581 LWCTES------------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT  642 (835)
Q Consensus       581 VWd~~t------------------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~  642 (835)
                      ||....                  ++.+..+.+|...|.+++|+|++.+|++++.|++|.|||..+. ..+..+.+|.+.
T Consensus        95 iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF-~~~~vl~~H~s~  173 (942)
T KOG0973|consen   95 IWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF-ELLKVLRGHQSL  173 (942)
T ss_pred             EeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccc-eeeeeeeccccc
Confidence            998662                  3467888999999999999999999999999999999999998 568999999999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---------CceEEEEecCCCEEEEEEc----CCcEEEEEC
Q 003271          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---------GATQMRFQPRLGRILAAAI----ENYISILDV  709 (835)
Q Consensus       643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---------~i~~l~fsp~~~~ll~~s~----dg~I~IwDl  709 (835)
                      |..+.|+|-|+ +|++-++|++|+||++.+..+.+.+..         ....+.|+|+|.+|++...    ...+.|++-
T Consensus       174 VKGvs~DP~Gk-y~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR  252 (942)
T KOG0973|consen  174 VKGVSWDPIGK-YFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIER  252 (942)
T ss_pred             ccceEECCccC-eeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEec
Confidence            99999999987 777999999999999887666665542         2667889999999998654    246889999


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCC-------------CC----EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271          710 ETQVCRLKLQGHKNQVHSVCWNTS-------------GE----YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS  771 (835)
Q Consensus       710 ~t~~~i~~l~~h~~~I~sl~fspd-------------g~----~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s  771 (835)
                      .+.+.-..+.||..++.++.|+|.             ..    .+|+|+ |++|.||.....++...++.+  ....|..
T Consensus       253 ~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~l--f~~SI~D  330 (942)
T KOG0973|consen  253 GTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNL--FNKSIVD  330 (942)
T ss_pred             CCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhh--hcCceee
Confidence            999999999999999999999871             11    456677 999999999776443333333  3578999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          772 CVFHPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       772 v~fspdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      ++|+|||..|++++.||+|.++.++..+
T Consensus       331 msWspdG~~LfacS~DGtV~~i~Fee~E  358 (942)
T KOG0973|consen  331 MSWSPDGFSLFACSLDGTVALIHFEEKE  358 (942)
T ss_pred             eeEcCCCCeEEEEecCCeEEEEEcchHH
Confidence            9999999999999999999999987654

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.2e-25  Score=228.85  Aligned_cols=287  Identities=19%  Similarity=0.318  Sum_probs=244.7

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      .+..++.+.||.+.|+.++.......+.+++.|.+.+||.+++++++..+.+|.+.|.+|+|++.+.++++++.|++..|
T Consensus       137 ~~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI  216 (481)
T KOG0300|consen  137 KFRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI  216 (481)
T ss_pred             eEeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence            45677888999999999999888889999999999999999999999999999999999999999999999999999999


Q ss_pred             Eec------CC---------------------------------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          624 WDT------EN---------------------------------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       624 WDl------~t---------------------------------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      |..      ..                                 -..++..+.+|...|.+..|...+. -+++++.|.+
T Consensus       217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~-Q~vTaSWDRT  295 (481)
T KOG0300|consen  217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQ-QMVTASWDRT  295 (481)
T ss_pred             HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcc-eeeeeecccc
Confidence            962      10                                 0124567889999999999998876 4569999999


Q ss_pred             EEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271          665 IRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasg  740 (835)
                      ..+||+++++.+..+.++   .+.++-+|....+++.+.|.+.++||.+.. ..+..|.+|...|+++.|..+.+ +++|
T Consensus       296 AnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSg  374 (481)
T KOG0300|consen  296 ANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTDDR-VVSG  374 (481)
T ss_pred             ceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecCCc-eeec
Confidence            999999999999888755   677788999899999999999999999854 55678999999999999987665 5566


Q ss_pred             e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEe-----ccCCCCeeEEE
Q 003271          741 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL-----SAHDKLVSSLA  814 (835)
Q Consensus       741 s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l-----~~h~~~V~~la  814 (835)
                      + |.+|+|||+++..  ..+.++. ...+++.++++..++.|+.--.+..|++||++...+..+     .+|...|+|++
T Consensus       375 SDDrTvKvWdLrNMR--splATIR-tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~A  451 (481)
T KOG0300|consen  375 SDDRTVKVWDLRNMR--SPLATIR-TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCA  451 (481)
T ss_pred             CCCceEEEeeecccc--Ccceeee-cCCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeee
Confidence            6 8899999999874  3444444 367889999999999888888888999999998876643     48999999999


Q ss_pred             EeCCCC--EEEEEECCCcEEEeC
Q 003271          815 ASTVNG--MVASASHDKCVKIWK  835 (835)
Q Consensus       815 ~spdg~--~LaSgs~DG~V~IWd  835 (835)
                      |..+-.  -|++|+.|..+.=|+
T Consensus       452 W~eehp~cnLftcGFDR~v~gW~  474 (481)
T KOG0300|consen  452 WLEEHPACNLFTCGFDRMVAGWK  474 (481)
T ss_pred             ccccCcccccccccccceeeeeE
Confidence            986543  588999999998885

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=4.8e-24  Score=208.39  Aligned_cols=295  Identities=18%  Similarity=0.255  Sum_probs=238.5

Q ss_pred             ccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe
Q 003271          495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG  574 (835)
Q Consensus       495 ~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs  574 (835)
                      -++..+.+.+...+.++||...+.++-..++-.+.+.    ..+..+..+....+.-+.|.+.|+|.+|+|+|.+|++|+
T Consensus        33 qairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~----~hea~~~pp~v~~kr~khhkgsiyc~~ws~~geliatgs  108 (350)
T KOG0641|consen   33 QAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRH----AHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGELIATGS  108 (350)
T ss_pred             hheeeEEecCCCceEEeccCCceEEEEccccccCccc----ccccccCCCeEEeeeccccCccEEEEEecCccCeEEecC
Confidence            3455667777889999999999999975554433321    112223344556677789999999999999999999999


Q ss_pred             CCCeEEEEEcCC--CeE---EEEeccCCCCeEEEEECCC----CCEEEEEEC-CCeEEEEecCCCCceeEEeecCCCCeE
Q 003271          575 HDKKAVLWCTES--FTV---KSTLEEHTQWITDVRFSPS----LSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVM  644 (835)
Q Consensus       575 ~Dg~I~VWd~~t--~~~---i~~l~~h~~~V~sv~fspd----g~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~~~V~  644 (835)
                      .|++|++.-.+.  ...   -..+.-|.+.|.+++|..+    +.+|++++. |..|++-|...+.. +..+.+|.+.|.
T Consensus       109 ndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~-~~a~sghtghil  187 (350)
T KOG0641|consen  109 NDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQG-FHALSGHTGHIL  187 (350)
T ss_pred             CCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCc-ceeecCCcccEE
Confidence            999999975543  222   2456679999999999654    556777654 66777778777664 889999999998


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAAIENYISILDVETQVC  714 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~  714 (835)
                      ++- +-+ ..++++|+.|.+|++||++-..++.++.          ..+..+++.|.|..+++|-.|....+||++.++.
T Consensus       188 aly-swn-~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~  265 (350)
T KOG0641|consen  188 ALY-SWN-GAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM  265 (350)
T ss_pred             EEE-Eec-CcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce
Confidence            873 333 4589999999999999999998887764          2378899999999999999999999999999999


Q ss_pred             EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271          715 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  792 (835)
Q Consensus       715 i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I  792 (835)
                      +..+..|...|.|+.|+|...|+++|+ |..|++-|+...-. ...+.....|...+..|.|+|..-.+++.+.|.++.+
T Consensus       266 iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tl  345 (350)
T KOG0641|consen  266 IQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATL  345 (350)
T ss_pred             eeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEE
Confidence            999999999999999999999999999 99999999875321 2345566789999999999999999999999999999


Q ss_pred             EEcC
Q 003271          793 WNMT  796 (835)
Q Consensus       793 wDl~  796 (835)
                      |-+.
T Consensus       346 wa~~  349 (350)
T KOG0641|consen  346 WALN  349 (350)
T ss_pred             eccC
Confidence            9764

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.5e-25  Score=255.06  Aligned_cols=241  Identities=19%  Similarity=0.353  Sum_probs=199.1

Q ss_pred             EEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC--------------------------------CC-----
Q 003271          589 VKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--------------------------------PD-----  630 (835)
Q Consensus       589 ~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t--------------------------------~~-----  630 (835)
                      ....+. .|.+.|+++.|++||+|||+|+.|+.|+||.+..                                ..     
T Consensus       258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s  337 (712)
T KOG0283|consen  258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS  337 (712)
T ss_pred             EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence            334555 8999999999999999999999999999998754                                00     


Q ss_pred             ----------------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEE
Q 003271          631 ----------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQM  686 (835)
Q Consensus       631 ----------------------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l  686 (835)
                                            .++..+.+|.+.|.+|.|+.+  ++|++++.|.+|++|++...+|+++|...  |+|+
T Consensus       338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcV  415 (712)
T KOG0283|consen  338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCV  415 (712)
T ss_pred             ccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEE
Confidence                                  124457889999999999976  47779999999999999999999998755  9999


Q ss_pred             EEecC-CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe--
Q 003271          687 RFQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--  762 (835)
Q Consensus       687 ~fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l--  762 (835)
                      +|+|. +++|++|+.|+.|+||++...+.+.-.. -..-|+++||.|||++.+.|+ +|.+++|+....+   .....  
T Consensus       416 aFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk---~~~~~~I  491 (712)
T KOG0283|consen  416 AFNPVDDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLK---LVSDFHI  491 (712)
T ss_pred             EecccCCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEeccEEEEEEccCCe---EEEeeeE
Confidence            99995 5789999999999999999887776555 448899999999999999999 9999999998763   22221  


Q ss_pred             ec------CCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCCcEE-EeccCCC--CeeEEEEeCCCCEEEEEECCCcEE
Q 003271          763 SC------TGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       763 ~~------~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~--~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      ..      ....|+.+.|.|... .|++.+.|..|+|||.++..++ .+.++..  .-....|+.||++|+++++|..|+
T Consensus       492 ~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VY  571 (712)
T KOG0283|consen  492 RLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVY  571 (712)
T ss_pred             eeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEE
Confidence            11      123799999997654 5999999999999999888776 5554432  234567889999999999999999


Q ss_pred             EeC
Q 003271          833 IWK  835 (835)
Q Consensus       833 IWd  835 (835)
                      ||+
T Consensus       572 iW~  574 (712)
T KOG0283|consen  572 IWK  574 (712)
T ss_pred             EEe
Confidence            996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=2.2e-25  Score=239.44  Aligned_cols=240  Identities=19%  Similarity=0.266  Sum_probs=207.6

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCC
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +.--.+.|++++|-.||++||+|+..|.|+|||..+...+..+.+|..+|..+.|+|. +..|++|+.|+.+++||+.+.
T Consensus        64 ~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a  143 (487)
T KOG0310|consen   64 FSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA  143 (487)
T ss_pred             HHhhccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCc
Confidence            3344567999999999999999999999999998776777889999999999999995 667888999999999999987


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEee--cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK--SGATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                      .. ...+.+|++.|.|.+|+|-..+++++|+.||.|++||++.. ..+..+.  .++..+.+-|.|..|++++ .+.|+|
T Consensus       144 ~v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkV  221 (487)
T KOG0310|consen  144 YV-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKV  221 (487)
T ss_pred             EE-EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEE
Confidence            64 66889999999999999999999999999999999999987 5566665  4588999999987776655 478999


Q ss_pred             EECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271          707 LDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       707 wDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg  784 (835)
                      ||+-++ +.+..+..|...|+|+++..++..|++++ |+.|+|||+.+-   +.++.+. -.++|.+++.+|++..+++|
T Consensus       222 WDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~---Kvv~s~~-~~~pvLsiavs~dd~t~viG  297 (487)
T KOG0310|consen  222 WDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNY---KVVHSWK-YPGPVLSIAVSPDDQTVVIG  297 (487)
T ss_pred             EEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccce---EEEEeee-cccceeeEEecCCCceEEEe
Confidence            999965 55555556999999999999999999999 999999997765   6777766 47889999999999999999


Q ss_pred             EcCCeEEEEEcC
Q 003271          785 GCYETLELWNMT  796 (835)
Q Consensus       785 s~dg~I~IwDl~  796 (835)
                      ..+|.+.+-+..
T Consensus       298 msnGlv~~rr~~  309 (487)
T KOG0310|consen  298 MSNGLVSIRRRE  309 (487)
T ss_pred             cccceeeeehhh
Confidence            999988776443

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=2.2e-26  Score=242.15  Aligned_cols=264  Identities=21%  Similarity=0.352  Sum_probs=223.9

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ....+++|+.|..|++|.....                 ....+.++.|..+.|+++.|.++++++++++.|+.+++|++
T Consensus       186 ~sdtlatgg~Dr~Ik~W~v~~~-----------------k~~~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnv  248 (459)
T KOG0288|consen  186 NSDTLATGGSDRIIKLWNVLGE-----------------KSELISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNV  248 (459)
T ss_pred             Ccchhhhcchhhhhhhhhcccc-----------------hhhhhhhhhccCCCcceeeecCCCceEEeecCCCceeeeec
Confidence            3357799999999999933222                 23456778899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      +......++.+|.+.|+++.|......+++|+.|.+|++||+....+ .+++. ..+.+..|+..   ...+++|-.|+.
T Consensus       249 d~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C-~kt~l-~~S~cnDI~~~---~~~~~SgH~Dkk  323 (459)
T KOG0288|consen  249 DSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC-SKTVL-PGSQCNDIVCS---ISDVISGHFDKK  323 (459)
T ss_pred             cchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe-ecccc-ccccccceEec---ceeeeecccccc
Confidence            99999999999999999999998877799999999999999998543 44333 22445666655   336779999999


Q ss_pred             EEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCCCEEE
Q 003271          665 IRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLA  738 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~fspdg~~La  738 (835)
                      |++||+++..++.....  .++++..++++..+++++.|..+.++|+++......+..    .....+.++|||++.|++
T Consensus       324 vRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva  403 (459)
T KOG0288|consen  324 VRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA  403 (459)
T ss_pred             eEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence            99999999999888764  499999999999999999999999999999988877754    234588899999999999


Q ss_pred             EEe-CCeEEEEEcCCCCCcceEEEeecCCC--ceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          739 SVS-DELVRVWSIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       739 sgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~--~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      +|+ ||.|+||++.++   ++...+.....  .|++++|+|.|..+++++.++.+.+|
T Consensus       404 AGS~dgsv~iW~v~tg---KlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW  458 (459)
T KOG0288|consen  404 AGSADGSVYIWSVFTG---KLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW  458 (459)
T ss_pred             eccCCCcEEEEEccCc---eEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence            999 999999999998   55555554444  59999999999999999999999999

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=4.6e-26  Score=250.89  Aligned_cols=273  Identities=23%  Similarity=0.427  Sum_probs=234.3

Q ss_pred             EEEEe-CCCCEEEEEeCCCeEEEEEcCCCe------EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-c
Q 003271          560 SCHFS-PDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y  631 (835)
Q Consensus       560 sl~fS-pdg~~Lasgs~Dg~I~VWd~~t~~------~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~  631 (835)
                      ++..+ |.++||++||.||.|++|++....      .+.+++.|.++|.+++...+++.|+++|.|-+|++|+..... .
T Consensus        29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~  108 (735)
T KOG0308|consen   29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF  108 (735)
T ss_pred             hccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch
Confidence            33443 367789999999999999875322      367788999999999999999999999999999999998764 5


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee--eeEe------------ecCceEEEEecCCCEEEE
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--AGVF------------KSGATQMRFQPRLGRILA  697 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~--~~~~------------~~~i~~l~fsp~~~~ll~  697 (835)
                      +..++..|.+.|.|+++-...+.++++|+-|+.|.+||++++..  +..+            +.++.+++.++.+..|+.
T Consensus       109 c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivs  188 (735)
T KOG0308|consen  109 CMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVS  188 (735)
T ss_pred             hHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEe
Confidence            68889999999999999444467999999999999999998732  2222            134788899999988999


Q ss_pred             EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271          698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  776 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp  776 (835)
                      |+.++.+++||.++.+.+..+.+|...|.++..++||+.+++++ ||+|++||+...   +|+.++..|...|+++..+|
T Consensus       189 Ggtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQ---rCl~T~~vH~e~VWaL~~~~  265 (735)
T KOG0308|consen  189 GGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQ---RCLATYIVHKEGVWALQSSP  265 (735)
T ss_pred             cCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeecccc---ceeeeEEeccCceEEEeeCC
Confidence            99999999999999999999999999999999999999999988 999999999887   89999999999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCC-cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          777 TFPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~-~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +-.++++|+.|+.|+.=|+.+. ++..+...+.+|..+..+.+..-+-+++.|+.|+-|.
T Consensus       266 sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~daPv~~l~~~~~~~~~WvtTtds~I~rW~  325 (735)
T KOG0308|consen  266 SFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWK  325 (735)
T ss_pred             CcceEEecCCCCcEEecccCCchhheEeecCCCchhhhhhccccCCceeeeccccceecC
Confidence            9999999999999999999884 4445556667888888776555557778899998884

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=1.7e-23  Score=204.60  Aligned_cols=287  Identities=18%  Similarity=0.256  Sum_probs=235.4

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC------C---------eEEEEeccCCCCeEEEEECCC
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------F---------TVKSTLEEHTQWITDVRFSPS  608 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------~---------~~i~~l~~h~~~V~sv~fspd  608 (835)
                      .|..+.++ ..+..|.+++|+|.|.+.++|+..++++|.-...      +         -..+.-+.|.+.|+|++|+|+
T Consensus        22 ~f~~i~~l-~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~  100 (350)
T KOG0641|consen   22 HFEAINIL-EDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPC  100 (350)
T ss_pred             ceEEEEEe-cchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCc
Confidence            34455555 4456799999999999999999999998874321      1         112334679999999999999


Q ss_pred             CCEEEEEECCCeEEEEecCCCCc----eeEEeecCCCCeEEEEEcCC---CCcEEEEEe-CCCcEEEEECCCCeeeeEee
Q 003271          609 LSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPS---KEDLLCSCD-NNSEIRYWSINNGSCAGVFK  680 (835)
Q Consensus       609 g~~Latgs~Dg~I~IWDl~t~~~----~~~~~~~h~~~V~sl~fsp~---g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~~  680 (835)
                      |.+|++|+.|.+|++.-......    .-..+..|.+.|..++|..+   +..++++++ .|..|++-|...+.....+.
T Consensus       101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s  180 (350)
T KOG0641|consen  101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS  180 (350)
T ss_pred             cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence            99999999999999987664332    23567789999999999753   345666654 57788888998888888777


Q ss_pred             cCceEE--EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-------CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003271          681 SGATQM--RFQPRLGRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSI  750 (835)
Q Consensus       681 ~~i~~l--~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-------h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl  750 (835)
                      ++...+  -++.++-.+++|+.|.+|++||++-..++..+..       ..+.|.+++..|.|++|++|. |....+||+
T Consensus       181 ghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydi  260 (350)
T KOG0641|consen  181 GHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDI  260 (350)
T ss_pred             CCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEe
Confidence            653322  2566778899999999999999999888877653       235789999999999999999 999999999


Q ss_pred             CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc-----EEEeccCCCCeeEEEEeCCCCEEEEE
Q 003271          751 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-----TLTLSAHDKLVSSLAASTVNGMVASA  825 (835)
Q Consensus       751 ~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~-----~~~l~~h~~~V~~la~spdg~~LaSg  825 (835)
                      +.+   ..+..+..|...|.++.|+|...++++++.|..|++-|+...-     .+....|.+.+..+.|+|..--+++.
T Consensus       261 rg~---r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfiss  337 (350)
T KOG0641|consen  261 RGG---RMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISS  337 (350)
T ss_pred             eCC---ceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeec
Confidence            998   8999999999999999999999999999999999999986532     34667899999999999999889999


Q ss_pred             ECCCcEEEe
Q 003271          826 SHDKCVKIW  834 (835)
Q Consensus       826 s~DG~V~IW  834 (835)
                      +.|.++.+|
T Consensus       338 sadkt~tlw  346 (350)
T KOG0641|consen  338 SADKTATLW  346 (350)
T ss_pred             cCcceEEEe
Confidence            999999999

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.94  E-value=3.2e-25  Score=221.53  Aligned_cols=239  Identities=24%  Similarity=0.364  Sum_probs=213.0

Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271          591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (835)
Q Consensus       591 ~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD  669 (835)
                      +.+.+|...|.+|+|+.+|..|++|+.|+++.||+++..+... ....+|.+.|-.++|+|....++++++.|..|++||
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD   93 (313)
T ss_pred             HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence            4566899999999999999999999999999999998764322 456789999999999999899999999999999999


Q ss_pred             CCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEE
Q 003271          670 INNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVR  746 (835)
Q Consensus       670 l~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~  746 (835)
                      ++.++++..+.  .+...+.|+|+|++++++..|..|.++|.++.+.+...+ ....+..++|+.++.+++... .|+|.
T Consensus        94 ~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~GlG~v~  172 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTNGLGCVE  172 (313)
T ss_pred             eccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEecCCceEE
Confidence            99999987765  556778999999999999999999999999988777665 556788889988777776666 79999


Q ss_pred             EEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003271          747 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  825 (835)
Q Consensus       747 IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSg  825 (835)
                      |......   +.+.++..|.....++.|+|+|+++++|+.|..+.+||+.+.-++ .+..++-+|..|+|+.||++||+|
T Consensus       173 ILsypsL---kpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASa  249 (313)
T KOG1407|consen  173 ILSYPSL---KPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASA  249 (313)
T ss_pred             EEecccc---ccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccCceEEEEeccCcceeecc
Confidence            9999866   889999999999999999999999999999999999999998887 677899999999999999999999


Q ss_pred             ECCCcEEE
Q 003271          826 SHDKCVKI  833 (835)
Q Consensus       826 s~DG~V~I  833 (835)
                      +.|..|-|
T Consensus       250 SEDh~IDI  257 (313)
T KOG1407|consen  250 SEDHFIDI  257 (313)
T ss_pred             CccceEEe
Confidence            99988755

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=1.9e-24  Score=220.84  Aligned_cols=283  Identities=19%  Similarity=0.286  Sum_probs=214.2

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE--EEe--ccCCCCeEEEEECCCCCEEEEE-ECCCeEE
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL--EEHTQWITDVRFSPSLSRLATS-SADRTVR  622 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i--~~l--~~h~~~V~sv~fspdg~~Latg-s~Dg~I~  622 (835)
                      +..+++|.+.|+|++|+.||++||+++.|+.|+||+++.....  +.+  .-.-+.-+.++|.||.+-+++. -...+++
T Consensus        79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence            4578899999999999999999999999999999999874321  111  1122356789999997655554 4456899


Q ss_pred             EEecCCC---Ccee--------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEE
Q 003271          623 VWDTENP---DYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRF  688 (835)
Q Consensus       623 IWDl~t~---~~~~--------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~f  688 (835)
                      +|.+...   ....        .....|...|..+-.... ..+|++++.|..|.+|+++ |..+..+..   .....++
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~-~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aav  236 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGN-AKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAV  236 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCC-ceEEEEecCCCcEEEEecC-Cceeeeeccccccccceee
Confidence            9987532   2111        122345566666666555 4578899999999999999 777776654   3667889


Q ss_pred             ecCCCEEEEEEcCCcEEEEECC---CC-----eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC----CC
Q 003271          689 QPRLGRILAAAIENYISILDVE---TQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SK  755 (835)
Q Consensus       689 sp~~~~ll~~s~dg~I~IwDl~---t~-----~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~----~~  755 (835)
                      +|+|.++++++..-.|++|.+-   .+     ..+..+++|...|..++|+++.+.+++.+ ||+++|||+.-.    ..
T Consensus       237 SP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qD  316 (420)
T KOG2096|consen  237 SPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQD  316 (420)
T ss_pred             CCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCC
Confidence            9999999999999999999874   22     34567889999999999999999999999 999999997532    11


Q ss_pred             cceEEE----eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271          756 GECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       756 ~~~i~~----l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      .+.+.+    +...+.....+.++|.|..|+++ ....|.+|..++++..  ....|...|.+|+|+++|++++||+ |.
T Consensus       317 pk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s-~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr  394 (420)
T KOG2096|consen  317 PKILKEGSAPLHAAGSEPVRLELSPSGDSLAVS-FGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DR  394 (420)
T ss_pred             chHhhcCCcchhhcCCCceEEEeCCCCcEEEee-cCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ce
Confidence            222222    22334555689999999966554 4458999999998877  3457999999999999999999987 56


Q ss_pred             cEEEe
Q 003271          830 CVKIW  834 (835)
Q Consensus       830 ~V~IW  834 (835)
                      .++++
T Consensus       395 ~vrv~  399 (420)
T KOG2096|consen  395 YVRVI  399 (420)
T ss_pred             eeeee
Confidence            67664

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=1.3e-23  Score=241.58  Aligned_cols=243  Identities=18%  Similarity=0.267  Sum_probs=189.4

Q ss_pred             EEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCC-------eEEEEeccCCCCeEEEEECCCC-CEEEEEECCC
Q 003271          549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADR  619 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg  619 (835)
                      ..+.+|.+.|++++|+| ++.+||+|+.|++|+|||+.+.       +.+..+.+|...|.+|+|+|++ .+|++++.|+
T Consensus        69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg  148 (493)
T PTZ00421         69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM  148 (493)
T ss_pred             ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence            34679999999999999 8899999999999999999764       3567888999999999999985 6999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC----ceEEEEecCCCEE
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRI  695 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~l  695 (835)
                      +|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+++++.+..+..+    ...+.|.++++.+
T Consensus       149 tVrIWDl~tg~-~~~~l~~h~~~V~sla~spdG~-lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~i  226 (493)
T PTZ00421        149 VVNVWDVERGK-AVEVIKCHSDQITSLEWNLDGS-LLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLI  226 (493)
T ss_pred             EEEEEECCCCe-EEEEEcCCCCceEEEEEECCCC-EEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeE
Confidence            99999999876 4677888999999999999976 7779999999999999999888776543    3467788988888


Q ss_pred             EEEE----cCCcEEEEECCCCe-EEEEEcC-CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec-CC
Q 003271          696 LAAA----IENYISILDVETQV-CRLKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-TG  766 (835)
Q Consensus       696 l~~s----~dg~I~IwDl~t~~-~i~~l~~-h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~-~~  766 (835)
                      ++++    .|+.|++||+++.. ++..... +...+....|++++.+|++++  |+.|++||+.++   ..+..... +.
T Consensus       227 vt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~---~~~~~~~~~s~  303 (493)
T PTZ00421        227 ITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE---RLTFCSSYSSV  303 (493)
T ss_pred             EEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC---ceEEEeeccCC
Confidence            8765    36899999998754 3333332 334566678899999888776  899999999987   34433322 34


Q ss_pred             CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271          767 NKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       767 ~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~  798 (835)
                      ..+..++|.|...  +-...-...++|.+...
T Consensus       304 ~~~~g~~~~pk~~--~dv~~~Ei~r~~~l~~~  333 (493)
T PTZ00421        304 EPHKGLCMMPKWS--LDTRKCEIARFYALTYH  333 (493)
T ss_pred             CCCcceEeccccc--ccccceeeeEEEEecCC
Confidence            5677888888532  11122224455655443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.93  E-value=7.4e-24  Score=212.31  Aligned_cols=273  Identities=17%  Similarity=0.159  Sum_probs=226.0

Q ss_pred             ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (835)
Q Consensus       502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V  581 (835)
                      +.....+|.+.+.|..+.+|.+.++                   ..+.++.||++.|+||+.+.+.++|++|+.|.++++
T Consensus        18 yN~eGDLlFscaKD~~~~vw~s~nG-------------------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~kL   78 (327)
T KOG0643|consen   18 YNREGDLLFSCAKDSTPTVWYSLNG-------------------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKL   78 (327)
T ss_pred             ecCCCcEEEEecCCCCceEEEecCC-------------------ceeeeecCCCceEEEEEecCCcceeeeccccceeEE
Confidence            3334479999999999999966554                   346788999999999999999999999999999999


Q ss_pred             EEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC-----CCeEEEEecCCC------CceeEEeecCCCCeEEEEEcC
Q 003271          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENP------DYSLRTFTGHSTTVMSLDFHP  650 (835)
Q Consensus       582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-----Dg~I~IWDl~t~------~~~~~~~~~h~~~V~sl~fsp  650 (835)
                      ||+++|+.+..++ ...+|..+.|+++|++++.+..     .+.|.++|+...      +.++..+..+.+.++.+.|.|
T Consensus        79 WDv~tGk~la~~k-~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~  157 (327)
T KOG0643|consen   79 WDVETGKQLATWK-TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGP  157 (327)
T ss_pred             EEcCCCcEEEEee-cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecc
Confidence            9999999999986 5678999999999998887755     368999999832      234667777889999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeee----EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeE
Q 003271          651 SKEDLLCSCDNNSEIRYWSINNGSCAG----VFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH  726 (835)
Q Consensus       651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~----~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~  726 (835)
                      -++ .|++|..||.|.+||++++..+.    .+...|+.++++++..++++++.|..-++||.++.++++++. ...+|.
T Consensus       158 l~~-~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~-te~PvN  235 (327)
T KOG0643|consen  158 LGE-TIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT-TERPVN  235 (327)
T ss_pred             cCC-EEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee-eccccc
Confidence            977 56699999999999999985543    234569999999999999999999999999999999999988 678999


Q ss_pred             EEEEcCCCCEEEEEe-CC--eEEEEEcCCCCC---------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          727 SVCWNTSGEYLASVS-DE--LVRVWSIGSGSK---------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       727 sl~fspdg~~Lasgs-Dg--~I~IwDl~t~~~---------~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      +.+++|-...++.|+ ..  .|.--+.+.++.         .+.+..+.+|-++|++++|+|+|+..++|+.||.|++..
T Consensus       236 ~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~  315 (327)
T KOG0643|consen  236 TAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHH  315 (327)
T ss_pred             ceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEECCCCcccccCCCCceEEEEE
Confidence            999999888777766 22  233333333311         145667889999999999999999999999999999875


Q ss_pred             cC
Q 003271          795 MT  796 (835)
Q Consensus       795 l~  796 (835)
                      .+
T Consensus       316 Fd  317 (327)
T KOG0643|consen  316 FD  317 (327)
T ss_pred             ec
Confidence            54

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=5.1e-24  Score=217.85  Aligned_cols=270  Identities=19%  Similarity=0.274  Sum_probs=220.5

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~  632 (835)
                      .-.+.|.++.|+|.+..|+++++||.+++||+........+ .|..++.+++|.+ ...+++|+.||.|+++|+.++.  
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~-~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~--   86 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKF-KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGN--   86 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhe-ecCCceeeeeccC-CceEEEeccCceEEEEEecCCc--
Confidence            34667999999999999999999999999999988666666 4899999999987 4689999999999999999876  


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCC
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ  712 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~  712 (835)
                      ...+..|...|.||.+++... .+++|+.|++|++||.+.......+..+-...+.+-.++.|++|+.+..|.+||+++.
T Consensus        87 ~~~igth~~~i~ci~~~~~~~-~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g~~LvVg~~~r~v~iyDLRn~  165 (323)
T KOG1036|consen   87 EDQIGTHDEGIRCIEYSYEVG-CVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDVSGNRLVVGTSDRKVLIYDLRNL  165 (323)
T ss_pred             ceeeccCCCceEEEEeeccCC-eEEEcccCccEEEEeccccccccccccCceEEEEeccCCEEEEeecCceEEEEEcccc
Confidence            466778999999999997644 6779999999999999986666666655455566777899999999999999999986


Q ss_pred             eEEEEEc--CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC-CcceEEEeecCC---------CceEEEEEeCCCC
Q 003271          713 VCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS-KGECIHELSCTG---------NKFHSCVFHPTFP  779 (835)
Q Consensus       713 ~~i~~l~--~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~-~~~~i~~l~~~~---------~~V~sv~fspdg~  779 (835)
                      .......  ..+..++||++.|++.-+++++ ||.|.+=.+.... .......+++|.         .+|++++|+|-..
T Consensus       166 ~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~  245 (323)
T KOG1036|consen  166 DEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHG  245 (323)
T ss_pred             cchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccc
Confidence            5544222  2455789999999888788888 9988876665541 112333455553         4689999999999


Q ss_pred             EEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          780 SLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       780 ~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                      .|++|+.||.|.+||+...+.+ .+...+..|..++|+.+|..||.++.
T Consensus       246 tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  246 TFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             eEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            9999999999999999988877 55566778999999999999999873

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.93  E-value=7.3e-25  Score=222.91  Aligned_cols=290  Identities=13%  Similarity=0.221  Sum_probs=230.2

Q ss_pred             ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (835)
Q Consensus       502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V  581 (835)
                      +.....++++|+.|..|+++....--... .......-+.......++++..|.++|+++.|+|....|++|+.|++|++
T Consensus       120 fs~DG~lvATGsaD~SIKildvermlaks-~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKl  198 (430)
T KOG0640|consen  120 FSPDGSLVATGSADASIKILDVERMLAKS-KPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKL  198 (430)
T ss_pred             eCCCCcEEEccCCcceEEEeehhhhhhhc-chhhhccCCcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEE
Confidence            33444799999999999999544211110 11111111222223568899999999999999999999999999999999


Q ss_pred             EEcCCCeEEEEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE--eecCCCCeEEEEEcCCCCcEEE
Q 003271          582 WCTESFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--FTGHSTTVMSLDFHPSKEDLLC  657 (835)
Q Consensus       582 Wd~~t~~~i~~l~--~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~--~~~h~~~V~sl~fsp~g~~ll~  657 (835)
                      ||...-...+.++  ....+|.+|.|+|.|.+|++|..-.++++||+.+-.+.+..  -..|.+.|+++.+++.++ +.+
T Consensus       199 FDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~-lYv  277 (430)
T KOG0640|consen  199 FDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGS-LYV  277 (430)
T ss_pred             EecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecCCcc-EEE
Confidence            9987644332222  34568999999999999999999999999999986643222  246889999999999976 778


Q ss_pred             EEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-----CCeEE
Q 003271          658 SCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHS  727 (835)
Q Consensus       658 sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~I~s  727 (835)
                      +++.||.|++||--+++|+.++.     ..+++..|..+++++++.+.|..+++|.+.+++++..+.+-.     ..-+.
T Consensus       278 TaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtq  357 (430)
T KOG0640|consen  278 TASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQ  357 (430)
T ss_pred             EeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhh
Confidence            99999999999999999998875     348889999999999999999999999999999999887632     12234


Q ss_pred             EEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          728 VCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       728 l~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      ..|+....|++.-.  .+.+..||.++...  ....-.+|.+.+..+.-+|.++-+++++.|-.+++|--
T Consensus       358 AvFNhtEdyVl~pDEas~slcsWdaRtadr--~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  358 AVFNHTEDYVLFPDEASNSLCSWDARTADR--VALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             hhhcCccceEEccccccCceeeccccchhh--hhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence            56888888888877  67899999998743  22233478999999999999999999999999999964

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.93  E-value=6.9e-23  Score=220.78  Aligned_cols=262  Identities=13%  Similarity=0.113  Sum_probs=205.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s  645 (835)
                      +.++++++.|+.|++||+.+++.+..+..+.. +.+++|+|+++.+ ++++.++.|++||+.+++. ...+..+. .+..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~-~~~~~~~~-~~~~   77 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLATGEV-IGTLPSGP-DPEL   77 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECCCCcE-EEeccCCC-CccE
Confidence            35788999999999999999999888876544 6789999999876 5667889999999998664 44444443 3567


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCC-cEEEEECCCCeEEEEEcCCC
Q 003271          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHK  722 (835)
Q Consensus       646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~  722 (835)
                      ++|+|+++.++++++.++.|++||+.+.+.+..+..  .+..++|+|++..++++..++ .+.+||.++++....+. ..
T Consensus        78 ~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~-~~  156 (300)
T TIGR03866        78 FALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL-VD  156 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-cC
Confidence            899999987777777899999999999888777753  367899999999999888765 57788999887766544 23


Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecC-------CCceEEEEEeCCCCEEEEE-EcCCeEEE
Q 003271          723 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHPTFPSLLVI-GCYETLEL  792 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~-------~~~V~sv~fspdg~~L~sg-s~dg~I~I  792 (835)
                      ..+.+++|++++.+|++++  ++.|++||+.++   +++..+..+       ......++|+|++++++++ +.++.|.+
T Consensus       157 ~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v  233 (300)
T TIGR03866       157 QRPRFAEFTADGKELWVSSEIGGTVSVIDVATR---KVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAV  233 (300)
T ss_pred             CCccEEEECCCCCEEEEEcCCCCEEEEEEcCcc---eeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEE
Confidence            4567899999999886554  889999999987   444433321       1123568899999987665 45668999


Q ss_pred             EEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEE-ECCCcEEEeC
Q 003271          793 WNMTENKTLTLSAHDKLVSSLAASTVNGMVASA-SHDKCVKIWK  835 (835)
Q Consensus       793 wDl~~~~~~~l~~h~~~V~~la~spdg~~LaSg-s~DG~V~IWd  835 (835)
                      ||+.+++......+...+.+++|+|++++|+++ +.+|.|+|||
T Consensus       234 ~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d  277 (300)
T TIGR03866       234 VDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVID  277 (300)
T ss_pred             EECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEE
Confidence            999998887554556689999999999998876 4689999997

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=8.4e-25  Score=241.04  Aligned_cols=315  Identities=15%  Similarity=0.227  Sum_probs=253.9

Q ss_pred             CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (835)
Q Consensus       504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd  583 (835)
                      ...+++.+|+.|+.|++|....+...             +.-.....+..|.+-|..+....+++.|++++.|.+|++|+
T Consensus        35 ~~~ryLfTgGRDg~i~~W~~~~d~~~-------------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~  101 (735)
T KOG0308|consen   35 PNGRYLFTGGRDGIIRLWSVTQDSNE-------------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWN  101 (735)
T ss_pred             CCCceEEecCCCceEEEeccccccCC-------------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEee
Confidence            34568999999999999944333211             01113567789999999999999999999999999999999


Q ss_pred             cCCC--eEEEEeccCCCCeEEEEE-CCCCCEEEEEECCCeEEEEecCCCCc---------eeEEee-cCCCCeEEEEEcC
Q 003271          584 TESF--TVKSTLEEHTQWITDVRF-SPSLSRLATSSADRTVRVWDTENPDY---------SLRTFT-GHSTTVMSLDFHP  650 (835)
Q Consensus       584 ~~t~--~~i~~l~~h~~~V~sv~f-spdg~~Latgs~Dg~I~IWDl~t~~~---------~~~~~~-~h~~~V~sl~fsp  650 (835)
                      ....  -++.++..|.+.|.|+++ .++...+|+|+.|+.|.|||++++..         ....+. ++...|++++-++
T Consensus       102 ~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~  181 (735)
T KOG0308|consen  102 AHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQ  181 (735)
T ss_pred             cccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCC
Confidence            9877  577889999999999999 78889999999999999999996622         122233 7889999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEE
Q 003271          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS  727 (835)
Q Consensus       651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~s  727 (835)
                      .+ .+|++|+..+.|++||.++.+.+..+.++   +.++..+.+|..+++++.||+|++||+...+|+.++..|...|.+
T Consensus       182 t~-t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWa  260 (735)
T KOG0308|consen  182 TG-TIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWA  260 (735)
T ss_pred             cc-eEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEE
Confidence            87 58889999999999999999888777755   888999999999999999999999999999999999999999999


Q ss_pred             EEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE----
Q 003271          728 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT----  802 (835)
Q Consensus       728 l~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~----  802 (835)
                      +..+|+-..+++|+ |+.|+.-|+++......   +.....+|..+..+....-+.+++.|+.|+-|...-...+.    
T Consensus       261 L~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tl---ick~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~~~~l~~s~~  337 (735)
T KOG0308|consen  261 LQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTL---ICKEDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEPDIALSVSGD  337 (735)
T ss_pred             EeeCCCcceEEecCCCCcEEecccCCchhheE---eecCCCchhhhhhccccCCceeeeccccceecCCccccccccCCC
Confidence            99999999999999 99999999998632222   22345667777777666667888999999999764321110    


Q ss_pred             ---------------------eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          803 ---------------------LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       803 ---------------------l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                                           .......|...++-.|.++++|=...|.+.+||
T Consensus       338 ~~~~~T~~~~~~~~~~~tp~~vi~Gg~ai~k~~mL~dkRhVlTkDa~gnv~lwD  391 (735)
T KOG0308|consen  338 LDFFSTDSNNHSCDLTNTPDSVIPGGAAIKKHAMLNDKRHVLTKDAKGNVALWD  391 (735)
T ss_pred             CCcccccCCCccccccCCCceeccCchhhhhhhhhcCcceEeeecCCCCEEEEE
Confidence                                 001112233444556778999999999999997

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.93  E-value=6.5e-24  Score=235.74  Aligned_cols=274  Identities=16%  Similarity=0.275  Sum_probs=230.7

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE--EEeccCCCCeEE-EEECC-CCCEEEEEECCCe
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEEHTQWITD-VRFSP-SLSRLATSSADRT  620 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i--~~l~~h~~~V~s-v~fsp-dg~~Latgs~Dg~  620 (835)
                      +..-+.+.+|...|..+++.+.. .+++++.||++++|+-.....+  ..+.+|.+.|.+ ++|.+ ++-.|++|+.|.+
T Consensus         4 Y~ls~~l~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~   82 (745)
T KOG0301|consen    4 YKLSHELEGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTT   82 (745)
T ss_pred             ceeEEEeccCccchheeEecCCe-EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccce
Confidence            34556789999999999887554 8999999999999997655544  556778888887 88876 4456999999999


Q ss_pred             EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEE
Q 003271          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILA  697 (835)
Q Consensus       621 I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~  697 (835)
                      |.+|...... ++.++.+|...|+|++...++.  +++|+.|.++++|-+..  +...+.   ..+..+..-|.+ .+++
T Consensus        83 i~v~~~~~~~-P~~~LkgH~snVC~ls~~~~~~--~iSgSWD~TakvW~~~~--l~~~l~gH~asVWAv~~l~e~-~~vT  156 (745)
T KOG0301|consen   83 IIVFKLSQAE-PLYTLKGHKSNVCSLSIGEDGT--LISGSWDSTAKVWRIGE--LVYSLQGHTASVWAVASLPEN-TYVT  156 (745)
T ss_pred             EEEEecCCCC-chhhhhccccceeeeecCCcCc--eEecccccceEEecchh--hhcccCCcchheeeeeecCCC-cEEe
Confidence            9999999765 5899999999999999877654  77999999999998753  333343   447888888886 8999


Q ss_pred             EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                      |+.|..|++|.-  ++.+.+|.+|...|+.+++-+++.+|.++.||.|++|++ ++   +++.+..+|...|+++....+
T Consensus       157 gsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~-~g---e~l~~~~ghtn~vYsis~~~~  230 (745)
T KOG0301|consen  157 GSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDL-DG---EVLLEMHGHTNFVYSISMALS  230 (745)
T ss_pred             ccCcceeeeccC--CchhhhhccchhheeeeEEecCCCeEeecCCceEEEEec-cC---ceeeeeeccceEEEEEEecCC
Confidence            999999999987  778899999999999999999988777666999999999 44   799999999999999998888


Q ss_pred             CCEEEEEEcCCeEEEEEcCCCcEEEeccCCC-CeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          778 FPSLLVIGCYETLELWNMTENKTLTLSAHDK-LVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       778 g~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~-~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      +..|++++.|++++||+..  ++.....|.. .|+++.+-++|. |++||.||.|+||
T Consensus       231 ~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVf  285 (745)
T KOG0301|consen  231 DGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVF  285 (745)
T ss_pred             CCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEE
Confidence            8899999999999999987  6665555554 899999888775 6778899999998

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.93  E-value=7.6e-23  Score=231.06  Aligned_cols=307  Identities=16%  Similarity=0.276  Sum_probs=245.9

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~  587 (835)
                      -+..|+.++.+.+|....                   -+.+.+++++...|+++.=+|-=..+|.|..+|+|.|++++.+
T Consensus       174 KIvvGs~~G~lql~Nvrt-------------------~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d  234 (910)
T KOG1539|consen  174 KIVVGSSQGRLQLWNVRT-------------------GKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD  234 (910)
T ss_pred             eEEEeecCCcEEEEEecc-------------------CcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC
Confidence            345677777777773322                   2568888999999999999998789999999999999999999


Q ss_pred             eEEEEeccCCCCeEEEEECCCCCE-EEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          588 TVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       588 ~~i~~l~~h~~~V~sv~fspdg~~-Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      +.+.+++...+.|+++.|..||+. +++|+..|.+.+||++..+........|.+.|..+.|.+.. .++++.+.|+.++
T Consensus       235 kil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk  313 (910)
T KOG1539|consen  235 KILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLK  313 (910)
T ss_pred             cEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCcee
Confidence            999999855699999999999875 56666679999999997765444455676667776666653 3566666666555


Q ss_pred             EEECCCCe-----------------eee----------------------------------------------------
Q 003271          667 YWSINNGS-----------------CAG----------------------------------------------------  677 (835)
Q Consensus       667 iwDl~s~~-----------------~~~----------------------------------------------------  677 (835)
                      +|=.+++.                 +++                                                    
T Consensus       314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~  393 (910)
T KOG1539|consen  314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL  393 (910)
T ss_pred             EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence            54322100                 000                                                    


Q ss_pred             --------------------------------------------Ee--------ecCceEEEEecCCCEEEEEEcCCcEE
Q 003271          678 --------------------------------------------VF--------KSGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       678 --------------------------------------------~~--------~~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                                                                  .+        ...+++++.++.|++.+.|...|.|.
T Consensus       394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id  473 (910)
T KOG1539|consen  394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTID  473 (910)
T ss_pred             cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEE
Confidence                                                        00        02266788999999999999999999


Q ss_pred             EEECCCCeEEEEE---cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-------------------------
Q 003271          706 ILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-------------------------  756 (835)
Q Consensus       706 IwDl~t~~~i~~l---~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~-------------------------  756 (835)
                      +|++.+|.....+   ..|..+|+.++.+.-++.+++++ +|.+++||+......                         
T Consensus       474 ~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~  553 (910)
T KOG1539|consen  474 RFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIAL  553 (910)
T ss_pred             EEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhc
Confidence            9999999988888   47999999999999899898888 999999998764200                         


Q ss_pred             -------------ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEE
Q 003271          757 -------------ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  823 (835)
Q Consensus       757 -------------~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~La  823 (835)
                                   +.++.+.+|.+.|++++|+|||++|++++.|++|++||+.++.++-...-+.+++.+.|+|+|.+||
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~LA  633 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFLA  633 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEEE
Confidence                         1122356799999999999999999999999999999999999997777788999999999999999


Q ss_pred             EEECC-CcEEEe
Q 003271          824 SASHD-KCVKIW  834 (835)
Q Consensus       824 Sgs~D-G~V~IW  834 (835)
                      |+..| .-|++|
T Consensus       634 T~Hvd~~gIylW  645 (910)
T KOG1539|consen  634 TVHVDQNGIYLW  645 (910)
T ss_pred             EEEecCceEEEE
Confidence            99988 569999

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.6e-24  Score=214.29  Aligned_cols=247  Identities=20%  Similarity=0.296  Sum_probs=204.0

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcC-CCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeE
Q 003271          545 FTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTV  621 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~-t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I  621 (835)
                      +.+...+.. .+.+..++|+++. ..+++++.||+++|||+. ..+++..+++|...|.++.|++. ...++++|.|++|
T Consensus        51 i~e~~s~d~-~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~Ti  129 (311)
T KOG0277|consen   51 IQECQSYDT-EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTI  129 (311)
T ss_pred             eEEEEeeec-ccceeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCce
Confidence            344444433 4569999999954 578889999999999964 34678899999999999999984 6678899999999


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCC-CEEEE
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRL-GRILA  697 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~-~~ll~  697 (835)
                      ++|+...+. .+.++.+|...|....|+|....++++++.|+.+++||++.......+.   ..+.+..|+... ..+++
T Consensus       130 KLW~~~r~~-Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~T  208 (311)
T KOG0277|consen  130 KLWDPNRPN-SVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLAT  208 (311)
T ss_pred             EeecCCCCc-ceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEe
Confidence            999998765 4899999999999999999999999999999999999998643332243   457788887755 55777


Q ss_pred             EEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEE
Q 003271          698 AAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF  774 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f  774 (835)
                      ++.|+.|++||++.- .++..+.+|.-.|+.|.|+|.. .+|++++ |=+++|||.....  .++.+...|..-+..+.|
T Consensus       209 g~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d--s~~e~~~~HtEFv~g~Dw  286 (311)
T KOG0277|consen  209 GGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD--SAIETVDHHTEFVCGLDW  286 (311)
T ss_pred             cCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch--hhhhhhhccceEEecccc
Confidence            888999999999974 6778889999999999999965 5777888 9999999998653  466677788888999999


Q ss_pred             eCC-CCEEEEEEcCCeEEEEEc
Q 003271          775 HPT-FPSLLVIGCYETLELWNM  795 (835)
Q Consensus       775 spd-g~~L~sgs~dg~I~IwDl  795 (835)
                      ++- ...++.++-|+.++||+-
T Consensus       287 s~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  287 SLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             ccccCceeeecccccceeeecc
Confidence            874 567899999999999983

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=1.1e-23  Score=224.77  Aligned_cols=278  Identities=19%  Similarity=0.298  Sum_probs=224.0

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE----EE---e-----------ccCCCCeEEEEECCCC
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----ST---L-----------EEHTQWITDVRFSPSL  609 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i----~~---l-----------~~h~~~V~sv~fspdg  609 (835)
                      +..+..|.-+|+||+++||++++++++.|++|.-|++.+++..    .+   +           +.|...|.+++.++|+
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            7788899999999999999999999999999999998877633    11   0           2688899999999999


Q ss_pred             CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEE
Q 003271          610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQM  686 (835)
Q Consensus       610 ~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l  686 (835)
                      +||++|+.|..|.||+..+... +..+.+|.+.|.+++|-... .-+++++.|+.|++|++.....+.++-   ..+..+
T Consensus       215 kylatgg~d~~v~Iw~~~t~eh-v~~~~ghr~~V~~L~fr~gt-~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~I  292 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEH-VKVFKGHRGAVSSLAFRKGT-SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGI  292 (479)
T ss_pred             cEEEecCCCceEEEecCcccch-hhcccccccceeeeeeecCc-cceeeeecCCceEEEehhHhHHHHHHhCCccceeee
Confidence            9999999999999999998764 78899999999999998654 456688999999999999877665554   346677


Q ss_pred             EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-c-
Q 003271          687 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-C-  764 (835)
Q Consensus       687 ~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-~-  764 (835)
                      .....+..+-+++.|.++++|++. .+....+.+|.+.+-|++|-.+..++..+.+|.|.+|++-..   +++++.. . 
T Consensus       293 daL~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KK---kplf~~~~AH  368 (479)
T KOG0299|consen  293 DALSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKK---KPLFTSRLAH  368 (479)
T ss_pred             chhcccceEEeccccceeEEEecc-ccceeeeeCCCCCeeeEEEecccceeeccCCceEEEeeeccc---CceeEeeccc
Confidence            766676777778899999999994 445556778999999999987666554444999999999876   3333321 1 


Q ss_pred             ----------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc----EEEeccCCCCeeEEEEeCCCCEEEEE-ECCC
Q 003271          765 ----------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----TLTLSAHDKLVSSLAASTVNGMVASA-SHDK  829 (835)
Q Consensus       765 ----------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~----~~~l~~h~~~V~~la~spdg~~LaSg-s~DG  829 (835)
                                +...|++++..|....+++|+.+|.|++|-+.++-    ++.-..-.+.|++|+|+++|+.|++| +...
T Consensus       369 gv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEh  448 (479)
T KOG0299|consen  369 GVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEH  448 (479)
T ss_pred             cccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEeccccc
Confidence                      11378999999999999999999999999998882    33333467889999999999955554 4443


Q ss_pred             cE
Q 003271          830 CV  831 (835)
Q Consensus       830 ~V  831 (835)
                      .+
T Consensus       449 Rl  450 (479)
T KOG0299|consen  449 RL  450 (479)
T ss_pred             cc
Confidence            33

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=8.4e-24  Score=225.72  Aligned_cols=286  Identities=20%  Similarity=0.277  Sum_probs=225.5

Q ss_pred             ccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccC-CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEE
Q 003271          495 LTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG-KGFTFTEFQLIPASTSKVESCHFSPDGKLLATG  573 (835)
Q Consensus       495 ~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~-~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasg  573 (835)
                      +++....+.+.+.++.+++.|++|--|....+.+.+....+..... .+..+.+-.  ++|...|.+++.|+||+|||+|
T Consensus       143 ~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r--~~h~keil~~avS~Dgkylatg  220 (479)
T KOG0299|consen  143 LSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESR--KGHVKEILTLAVSSDGKYLATG  220 (479)
T ss_pred             CcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCccc--ccccceeEEEEEcCCCcEEEec
Confidence            3344445566668899999999999996655544322222210001 222333222  4999999999999999999999


Q ss_pred             eCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       574 s~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      +.|..|.||+..+.+.+..+.+|.+.|.+++|......|++++.|++|++|+++...+ +.++.+|.+.|..|.....+ 
T Consensus       221 g~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~-vetlyGHqd~v~~IdaL~re-  298 (479)
T KOG0299|consen  221 GRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSY-VETLYGHQDGVLGIDALSRE-  298 (479)
T ss_pred             CCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHH-HHHHhCCccceeeechhccc-
Confidence            9999999999999999999999999999999998888999999999999999998765 78899999999999988764 


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-----------
Q 003271          654 DLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-----------  720 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----------  720 (835)
                      .++.+|+.|+++++|++.....+...  .+.+.|++|-.+ .++++|+.+|.|.+|++.+.+++.+...           
T Consensus       299 R~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~  377 (479)
T KOG0299|consen  299 RCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPV  377 (479)
T ss_pred             ceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeecccCceeEeeccccccCCcccc
Confidence            47778889999999999543322222  234777777655 8899999999999999999888876541           


Q ss_pred             -CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271          721 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGC  786 (835)
Q Consensus       721 -h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~  786 (835)
                       +..+|++|+..|...++++|+ +|.|++|-+..+.. ...+..+. -.+.|++++|+++|++|++|..
T Consensus       378 ~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls-~~GfVNsl~f~~sgk~ivagiG  445 (479)
T KOG0299|consen  378 NGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLS-LVGFVNSLAFSNSGKRIVAGIG  445 (479)
T ss_pred             ccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecc-cccEEEEEEEccCCCEEEEecc
Confidence             223899999999999999999 99999999988732 34455555 5678999999999997777754

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.92  E-value=1.3e-23  Score=224.97  Aligned_cols=275  Identities=18%  Similarity=0.265  Sum_probs=232.6

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC---eEEEEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~i~~l~--~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      .|..-|.++.+|...++++||+. |.|+|||+...   ..+..+.  .....|.++.+.|||+.|++|++-.+|.|||+.
T Consensus       417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLA  495 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLA  495 (705)
T ss_pred             ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeecc
Confidence            68888999999999999999985 88999998642   3333332  245689999999999999999999999999998


Q ss_pred             CCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCc
Q 003271          628 NPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       628 t~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~  703 (835)
                      .....++ .+....-..+.++.+||.+ +.++|..||.|.|||+.+...++.|.+   ++.||.++++|..|.+|+-|++
T Consensus       496 apTprikaeltssapaCyALa~spDak-vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDnt  574 (705)
T KOG0639|consen  496 APTPRIKAELTSSAPACYALAISPDAK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNT  574 (705)
T ss_pred             CCCcchhhhcCCcchhhhhhhcCCccc-eeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccc
Confidence            7764332 2333334577899999976 666788899999999999999999875   4899999999999999999999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~  782 (835)
                      |+.||+++++.+.... ..+.|.++.++|.+.+|++|- ++.|.|......    ..+.+.-|...|.++.|.+.|++++
T Consensus       575 vRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMens~vevlh~skp----~kyqlhlheScVLSlKFa~cGkwfv  649 (705)
T KOG0639|consen  575 VRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKP----EKYQLHLHESCVLSLKFAYCGKWFV  649 (705)
T ss_pred             eeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecccCcEEEEecCCc----cceeecccccEEEEEEecccCceee
Confidence            9999999987765544 567899999999999999999 788888876654    3445667899999999999999999


Q ss_pred             EEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          783 VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       783 sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      +.+.|+.+..|.+.-|..+.-....+.|.++.++.|.++||||+.|+...||
T Consensus       650 StGkDnlLnawrtPyGasiFqskE~SsVlsCDIS~ddkyIVTGSGdkkATVY  701 (705)
T KOG0639|consen  650 STGKDNLLNAWRTPYGASIFQSKESSSVLSCDISFDDKYIVTGSGDKKATVY  701 (705)
T ss_pred             ecCchhhhhhccCccccceeeccccCcceeeeeccCceEEEecCCCcceEEE
Confidence            9999999999999998888666778899999999999999999999887776

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.92  E-value=6.7e-24  Score=228.30  Aligned_cols=283  Identities=15%  Similarity=0.221  Sum_probs=221.9

Q ss_pred             CCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEE
Q 003271          493 GSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLAT  572 (835)
Q Consensus       493 g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Las  572 (835)
                      |+..++...++.....+++|++|.+|+.|+-..-...            -..|+.+.  +.....|.++.|++.|..|++
T Consensus       166 gtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas------------~~~fr~l~--P~E~h~i~sl~ys~Tg~~iLv  231 (641)
T KOG0772|consen  166 GTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDAS------------MRSFRQLQ--PCETHQINSLQYSVTGDQILV  231 (641)
T ss_pred             CceEEEEeeecCCCceeeeccccceEEEEeccccccc------------chhhhccC--cccccccceeeecCCCCeEEE
Confidence            5566777778888899999999999999954433111            11122222  234456999999999999888


Q ss_pred             EeCCCeEEEEEcCCCeEEEEe------------ccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEee--
Q 003271          573 GGHDKKAVLWCTESFTVKSTL------------EEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFT--  637 (835)
Q Consensus       573 gs~Dg~I~VWd~~t~~~i~~l------------~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~--  637 (835)
                      .+....++|+|-+........            ++|...++|.+|+|+ ...|+|++.||+++|||+...+..+..+.  
T Consensus       232 vsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k  311 (641)
T KOG0772|consen  232 VSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTK  311 (641)
T ss_pred             EecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeec
Confidence            888889999998765554433            579999999999997 45799999999999999987665444433  


Q ss_pred             ---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEe----e--cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271          638 ---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVF----K--SGATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       638 ---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~----~--~~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                         +..-+++.++|+++++. |++|..||.|.+|+..+....  ..+    .  ..++++.|+++|++|++-+.|+.+++
T Consensus       312 ~~~g~Rv~~tsC~~nrdg~~-iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKv  390 (641)
T KOG0772|consen  312 PAGGKRVPVTSCAWNRDGKL-IAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKV  390 (641)
T ss_pred             cCCCcccCceeeecCCCcch-hhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceee
Confidence               23457899999999884 778888999999998543322  111    1  25999999999999999999999999


Q ss_pred             EECCCC-eEEEEEcCC--CCCeEEEEEcCCCCEEEEEe-------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271          707 LDVETQ-VCRLKLQGH--KNQVHSVCWNTSGEYLASVS-------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  776 (835)
Q Consensus       707 wDl~t~-~~i~~l~~h--~~~I~sl~fspdg~~Lasgs-------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp  776 (835)
                      ||++.. +++....+-  ..+-+.++|+|+.++|++|+       .+.+.+||..+.   ..+..+......|..|.|+|
T Consensus       391 WDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~---d~v~ki~i~~aSvv~~~Whp  467 (641)
T KOG0772|consen  391 WDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTL---DTVYKIDISTASVVRCLWHP  467 (641)
T ss_pred             eeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccce---eeEEEecCCCceEEEEeecc
Confidence            999975 555555442  34567899999999999986       247999999887   67778877889999999999


Q ss_pred             CCCEEEEEEcCCeEEEE
Q 003271          777 TFPSLLVIGCYETLELW  793 (835)
Q Consensus       777 dg~~L~sgs~dg~I~Iw  793 (835)
                      .-+.|++++.||.++||
T Consensus       468 kLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  468 KLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             hhhheeeecCCCceEEE
Confidence            99999999999999887

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.92  E-value=1.7e-23  Score=233.11  Aligned_cols=237  Identities=21%  Similarity=0.319  Sum_probs=209.9

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      .+.|+++.|+++|.+||+|..+|.|.|||..+.+.+..+.+ |...|-+++|.  +..+.+|+.|+.|.++|++......
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            78899999999999999999999999999999999999988 99999999997  6689999999999999999877655


Q ss_pred             EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEecCCC-EEEEEE--cCCcEEEE
Q 003271          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLG-RILAAA--IENYISIL  707 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~-~ll~~s--~dg~I~Iw  707 (835)
                      ..+.+|...|..+.|++++. .+++|+.|+.|.|||.........+   ...+..++|+|-.. .|++|+  .|+.|++|
T Consensus       295 ~~~~~H~qeVCgLkws~d~~-~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fw  373 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGN-QLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFW  373 (484)
T ss_pred             hhhhcccceeeeeEECCCCC-eeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEE
Confidence            66889999999999999976 7889999999999999666555444   45699999999764 455543  58999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271          708 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       708 Dl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg  784 (835)
                      |..++..+..+. ....|.+|.|++..+-|+++.   ++.|.||++.+.   ..+..+.+|...|..++++|||..|+++
T Consensus       374 n~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~---~~~~~l~gH~~RVl~la~SPdg~~i~t~  449 (484)
T KOG0305|consen  374 NTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSM---KLVAELLGHTSRVLYLALSPDGETIVTG  449 (484)
T ss_pred             EcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEecccc---ceeeeecCCcceeEEEEECCCCCEEEEe
Confidence            999999988876 578899999999987666654   779999999886   7888999999999999999999999999


Q ss_pred             EcCCeEEEEEcCCC
Q 003271          785 GCYETLELWNMTEN  798 (835)
Q Consensus       785 s~dg~I~IwDl~~~  798 (835)
                      +.|.++++|++-+.
T Consensus       450 a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  450 AADETLRFWNLFDE  463 (484)
T ss_pred             cccCcEEeccccCC
Confidence            99999999998764

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=8.3e-23  Score=236.18  Aligned_cols=227  Identities=17%  Similarity=0.220  Sum_probs=175.3

Q ss_pred             EEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCe--------EEEEeccCCCCeEEEEECCCCCE-EEEEE
Q 003271          547 EFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSR-LATSS  616 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~--------~i~~l~~h~~~V~sv~fspdg~~-Latgs  616 (835)
                      .+..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.        .+..+.+|...|.+|+|+|++.. |++++
T Consensus        66 ~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS  145 (568)
T PTZ00420         66 PVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSG  145 (568)
T ss_pred             eEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEe
Confidence            56778899999999999996 7899999999999999997542        34567889999999999998875 57899


Q ss_pred             CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceE-----EEE
Q 003271          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQ-----MRF  688 (835)
Q Consensus       617 ~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~-----l~f  688 (835)
                      .|++|+|||+.++.. ...+. |...|.+++|+|+|. +|++++.|+.|+|||+++++.+..+.++   +..     ..|
T Consensus       146 ~DgtIrIWDl~tg~~-~~~i~-~~~~V~SlswspdG~-lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~f  222 (568)
T PTZ00420        146 FDSFVNIWDIENEKR-AFQIN-MPKKLSSLKWNIKGN-LLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGL  222 (568)
T ss_pred             CCCeEEEEECCCCcE-EEEEe-cCCcEEEEEECCCCC-EEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeE
Confidence            999999999998764 34443 567899999999987 6677888999999999999988777644   212     234


Q ss_pred             ecCCCEEEEEEcCC----cEEEEECCC-CeEEEEEc--CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEE
Q 003271          689 QPRLGRILAAAIEN----YISILDVET-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  760 (835)
Q Consensus       689 sp~~~~ll~~s~dg----~I~IwDl~t-~~~i~~l~--~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~  760 (835)
                      +++++++++++.++    .|+|||++. ..++..+.  .+.+.+......++|.++++|+ |+.|++|++..+. ...+.
T Consensus       223 s~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~  301 (568)
T PTZ00420        223 GGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVN  301 (568)
T ss_pred             cCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeec
Confidence            58889999988774    799999995 45555443  2333344444455688888887 9999999998752 12233


Q ss_pred             EeecCCCceEEEEEeCCC
Q 003271          761 ELSCTGNKFHSCVFHPTF  778 (835)
Q Consensus       761 ~l~~~~~~V~sv~fspdg  778 (835)
                      .+. +..++..++|.|..
T Consensus       302 ~~~-s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        302 EYK-SCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccc-cCCCccceEEcccc
Confidence            333 55678889999974

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.92  E-value=1.8e-23  Score=231.29  Aligned_cols=314  Identities=15%  Similarity=0.203  Sum_probs=240.4

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC-----------CCEEEEE
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-----------GKLLATG  573 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd-----------g~~Lasg  573 (835)
                      ....+.+.-.|..+.+|+..+-...    +            ....+--|...|+.+.--|-           ...++++
T Consensus       335 t~~klscVYndhSlYvWDvrD~~kv----g------------k~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TC  398 (1080)
T KOG1408|consen  335 TTDKLSCVYNDHSLYVWDVRDVNKV----G------------KCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTC  398 (1080)
T ss_pred             CCceEEEEEcCceEEEEeccccccc----c------------ceeeeeeccceeeeeccccccccCcccccCCccceeEe
Confidence            3356777778999999966554221    1            22333345555665554431           1258899


Q ss_pred             eCCCeEEEEEcCCCeEEEE-------------e------------------------ccCCCCeEEEEECCCCCEEEEEE
Q 003271          574 GHDKKAVLWCTESFTVKST-------------L------------------------EEHTQWITDVRFSPSLSRLATSS  616 (835)
Q Consensus       574 s~Dg~I~VWd~~t~~~i~~-------------l------------------------~~h~~~V~sv~fspdg~~Latgs  616 (835)
                      +.|++|++||++.+..-..             .                        ......|.+++.+|++.+|++|.
T Consensus       399 SsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGD  478 (1080)
T KOG1408|consen  399 SSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGD  478 (1080)
T ss_pred             cCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccC
Confidence            9999999999875211000             0                        01334699999999999999999


Q ss_pred             CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC-eeeeEee---cCceEEEEec
Q 003271          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-SCAGVFK---SGATQMRFQP  690 (835)
Q Consensus       617 ~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~---~~i~~l~fsp  690 (835)
                      .-|+++||++.+.++ ......|...|.|+.|+..  +..+|++++.|..|.+||+... ..+.++.   ..|+++.|..
T Consensus       479 r~GnlrVy~Lq~l~~-~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~  557 (1080)
T KOG1408|consen  479 RGGNLRVYDLQELEY-TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFAC  557 (1080)
T ss_pred             ccCceEEEEehhhhh-hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEee
Confidence            999999999998765 6677889999999999853  4568999999999999999653 3444444   4589999988


Q ss_pred             CC--CEEEEEEcCCcEEEEECCCCeEEEEEcC-----CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe
Q 003271          691 RL--GRILAAAIENYISILDVETQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL  762 (835)
Q Consensus       691 ~~--~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l  762 (835)
                      .|  ...++++.|..|.+--.........|..     ....++.++..|..+++++++ |..|+|||+.+++..+.++--
T Consensus       558 ~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs  637 (1080)
T KOG1408|consen  558 NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGS  637 (1080)
T ss_pred             cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeeccc
Confidence            87  5678888888776543332111122221     235688999999999999999 999999999999544444444


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          763 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       763 ~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..|.+....+...|.|.||++.+.|.+|.+||..+++++ ...+|...|+.+.|.+|.++|++.+.||.|.||+
T Consensus       638 ~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW~  711 (1080)
T KOG1408|consen  638 RDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVWK  711 (1080)
T ss_pred             ccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEEE
Confidence            567788999999999999999999999999999999999 8889999999999999999999999999999995

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.92  E-value=7.9e-22  Score=212.52  Aligned_cols=284  Identities=14%  Similarity=0.124  Sum_probs=209.5

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEcC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~  585 (835)
                      .++++++.|+.+.+|.....                   ..+..+.+|.. +.+++|+|+++.+ ++++.++.|++||..
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~-------------------~~~~~~~~~~~-~~~l~~~~dg~~l~~~~~~~~~v~~~d~~   61 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATL-------------------EVTRTFPVGQR-PRGITLSKDGKLLYVCASDSDTIQVIDLA   61 (300)
T ss_pred             cEEEEecCCCEEEEEECCCC-------------------ceEEEEECCCC-CCceEECCCCCEEEEEECCCCeEEEEECC
Confidence            46788889999999943221                   12344445543 6789999999976 566788999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      +++.+..+..+.. +..++|+|+++.++++ +.|+.|++||+.+... +..+. +...+.+++|+|++..++++...+..
T Consensus        62 ~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~-~~~~~-~~~~~~~~~~~~dg~~l~~~~~~~~~  138 (300)
T TIGR03866        62 TGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKV-LAEIP-VGVEPEGMAVSPDGKIVVNTSETTNM  138 (300)
T ss_pred             CCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeE-EeEee-CCCCcceEEECCCCCEEEEEecCCCe
Confidence            9988877765544 5678999999877655 5689999999987553 44443 23457889999998755544433346


Q ss_pred             EEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEEcCCC-----C--CeEEEEEcCCC
Q 003271          665 IRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHK-----N--QVHSVCWNTSG  734 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~-----~--~I~sl~fspdg  734 (835)
                      +.+||..+++......  .....+.|++++..+++++ .++.|++||+++++.+..+..+.     .  ....++|+|++
T Consensus       139 ~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg  218 (300)
T TIGR03866       139 AHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDG  218 (300)
T ss_pred             EEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCC
Confidence            7788999887765443  3467789999999887665 58999999999988776654221     1  23468899999


Q ss_pred             CEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEeccCCCCee
Q 003271          735 EYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVS  811 (835)
Q Consensus       735 ~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h~~~V~  811 (835)
                      ++++++.  ++.|.+||+.++   +.+..+. +...+.+++|+|++.+|++++ .++.|.+||+.+++++.........+
T Consensus       219 ~~~~~~~~~~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~  294 (300)
T TIGR03866       219 KTAFVALGPANRVAVVDAKTY---EVLDYLL-VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGRLPW  294 (300)
T ss_pred             CEEEEEcCCCCeEEEEECCCC---cEEEEEE-eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcccccc
Confidence            9865543  778999999876   4444332 345788999999999998875 58899999999999874444557778


Q ss_pred             EEEEeC
Q 003271          812 SLAAST  817 (835)
Q Consensus       812 ~la~sp  817 (835)
                      .|+++|
T Consensus       295 ~~~~~~  300 (300)
T TIGR03866       295 GVVVRP  300 (300)
T ss_pred             eeEeCC
Confidence            888865

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=2.2e-23  Score=231.59  Aligned_cols=258  Identities=19%  Similarity=0.322  Sum_probs=223.4

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE-EEEeC-CCCEEEEEeCCCeEEEEEc
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES-CHFSP-DGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s-l~fSp-dg~~Lasgs~Dg~I~VWd~  584 (835)
                      ..+.++|.|+++++|..                 ++..+.+...+.+|.+-|.+ ++|.+ ++-.|++|+.|++|.+|..
T Consensus        26 ~~i~s~sRd~t~~vw~~-----------------~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~   88 (745)
T KOG0301|consen   26 VCIISGSRDGTVKVWAK-----------------KGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKL   88 (745)
T ss_pred             eEEeecCCCCceeeeec-----------------cCcccccceecccCcceeeccceeccccCcceEeecccceEEEEec
Confidence            46889999999999922                 34455666778889998888 88886 5556999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      ....++.++++|...|+|+....++. +++||+|.+++||.+..-   ...+.+|...|+++.+.|++  .+++|+.|++
T Consensus        89 ~~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~l---~~~l~gH~asVWAv~~l~e~--~~vTgsaDKt  162 (745)
T KOG0301|consen   89 SQAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGEL---VYSLQGHTASVWAVASLPEN--TYVTGSADKT  162 (745)
T ss_pred             CCCCchhhhhccccceeeeecCCcCc-eEecccccceEEecchhh---hcccCCcchheeeeeecCCC--cEEeccCcce
Confidence            99999999999999999999888877 999999999999988753   45589999999999999986  5779999999


Q ss_pred             EEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271          665 IRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      |++|.-  ++++++|.++   +..+++-++ ..|++++.||.|+.|++ +++++..+.+|.+.|+++....++..+++++
T Consensus       163 IklWk~--~~~l~tf~gHtD~VRgL~vl~~-~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~g  238 (745)
T KOG0301|consen  163 IKLWKG--GTLLKTFSGHTDCVRGLAVLDD-SHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTG  238 (745)
T ss_pred             eeeccC--CchhhhhccchhheeeeEEecC-CCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEec
Confidence            999986  6778888776   667777776 56889999999999999 7899999999999999999777777788877


Q ss_pred             -CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          742 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       742 -Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                       |++++||+..     +|...+......|+++.+-++|+ |++|++||.|+||..+.
T Consensus       239 EDrtlriW~~~-----e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k  289 (745)
T KOG0301|consen  239 EDRTLRIWKKD-----ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDK  289 (745)
T ss_pred             CCceEEEeecC-----ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEecc
Confidence             9999999875     67777877788999999999988 89999999999998764

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=2.7e-23  Score=212.25  Aligned_cols=275  Identities=20%  Similarity=0.312  Sum_probs=221.0

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      -.||.|++.|.+||+|+.||.|.|||+.|...-+.+.+|..+|++++|++||+.|+|+|.|..|.+||+..+.. +..+.
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~-l~rir  104 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSP-LKRIR  104 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCc-eeEEE
Confidence            78999999999999999999999999999998899999999999999999999999999999999999999884 44444


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-------ecCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-------KSGATQMRFQPRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       638 ~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~  710 (835)
                       ..++|+.+.|+|...+.++++-.+..-.+.++..++....-       .....+..|.+.|+++++|...|.+.+||..
T Consensus       105 -f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~  183 (405)
T KOG1273|consen  105 -FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE  183 (405)
T ss_pred             -ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecc
Confidence             57899999999987777766665665666666543222111       1123445689999999999999999999999


Q ss_pred             CCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC------CcceEEEee--cCCCceEEEEEeCCCCE
Q 003271          711 TQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS------KGECIHELS--CTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       711 t~~~i~~l~~h~-~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~------~~~~i~~l~--~~~~~V~sv~fspdg~~  780 (835)
                      +.+++..++-.. ..|..+.++-.|++|+.-+ |..|+.|++..-.      ..+..+.+.  .....-.+|+|+.+|.|
T Consensus       184 t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeY  263 (405)
T KOG1273|consen  184 TLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEY  263 (405)
T ss_pred             hheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccE
Confidence            999998887655 7899999999999999887 9999999987321      111111111  12334578999999999


Q ss_pred             EEEEEcCC-eEEEEEcCCCcEEE-eccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          781 LLVIGCYE-TLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       781 L~sgs~dg-~I~IwDl~~~~~~~-l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +++++... .++||....|.+++ +.+.+ ....++.|+|-...|++- ..|.|+||.
T Consensus       264 v~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~  320 (405)
T KOG1273|consen  264 VCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWA  320 (405)
T ss_pred             EEeccccceeEEEEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEE
Confidence            98888543 89999999999884 45555 567889999988888887 788999993

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.92  E-value=6.8e-23  Score=208.69  Aligned_cols=274  Identities=18%  Similarity=0.256  Sum_probs=214.1

Q ss_pred             CcccCCCCCceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec
Q 003271          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (835)
Q Consensus       473 ~~~~~~s~~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~  552 (835)
                      ....++.++.+.+.|++..              +.+++.||.|++||+|........                . -+...
T Consensus        21 ev~~pP~DsIS~l~FSP~~--------------~~~~~A~SWD~tVR~wevq~~g~~----------------~-~ka~~   69 (347)
T KOG0647|consen   21 EVPNPPEDSISALAFSPQA--------------DNLLAAGSWDGTVRIWEVQNSGQL----------------V-PKAQQ   69 (347)
T ss_pred             ecCCCcccchheeEecccc--------------CceEEecccCCceEEEEEecCCcc----------------c-chhhh
Confidence            4555556677888888822              468889999999999955443111                0 13456


Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCC--EEEEEECCCeEEEEecCCCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~--~Latgs~Dg~I~IWDl~t~~  630 (835)
                      .|.++|.+++|+.||..+++|+.|+.+++||+.++. +..+..|.++|.++.|-+...  .|+|||+|++|+.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            899999999999999999999999999999999985 456678999999999988655  89999999999999999765


Q ss_pred             ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eE----eecCceEEEEecCCCEEEEEEcCCcEE
Q 003271          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GV----FKSGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~----~~~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      . +..+. ..+.|++++.-.   .+++.+..+..|.+|+++++... +.    ++-.+.+++...+....+.|+.+|.+.
T Consensus       149 p-v~t~~-LPeRvYa~Dv~~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~  223 (347)
T KOG0647|consen  149 P-VATLQ-LPERVYAADVLY---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVA  223 (347)
T ss_pred             e-eeeee-ccceeeehhccC---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEE
Confidence            3 44433 456788877653   37778888999999999765432 22    334488999999988889999999999


Q ss_pred             EEECCCC--eEEEEEcCCC---------CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          706 ILDVETQ--VCRLKLQGHK---------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       706 IwDl~t~--~~i~~l~~h~---------~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      |..+..+  +.-..|+.|.         ..|.+|+|+|....|++.+ ||++.+||-...   ..+.+...+..+|+++.
T Consensus       224 iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar---~kLk~s~~~~qpItcc~  300 (347)
T KOG0647|consen  224 IQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR---TKLKTSETHPQPITCCS  300 (347)
T ss_pred             EEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh---hhhhccCcCCCccceeE
Confidence            9988875  3344455454         2577899999766666655 999999998766   56777788999999999


Q ss_pred             EeCCCCEEEEEEc
Q 003271          774 FHPTFPSLLVIGC  786 (835)
Q Consensus       774 fspdg~~L~sgs~  786 (835)
                      |+.+|.+++.+..
T Consensus       301 fn~~G~ifaYA~g  313 (347)
T KOG0647|consen  301 FNRNGSIFAYALG  313 (347)
T ss_pred             ecCCCCEEEEEee
Confidence            9999998776654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.92  E-value=5.4e-23  Score=210.48  Aligned_cols=257  Identities=18%  Similarity=0.305  Sum_probs=208.0

Q ss_pred             EEEEeCCCeEEEEEcCC------------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271          570 LATGGHDKKAVLWCTES------------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t------------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      |++|+....|.-+++..            ...+..+..|.+.|++++.  ++.++|+|+.|.+|+|||+..... +..+.
T Consensus         4 iIvGtYE~~i~Gf~l~~~~~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q-lg~ll   80 (362)
T KOG0294|consen    4 IIVGTYEHVILGFKLDPEPKGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ-LGILL   80 (362)
T ss_pred             EEEeeeeeEEEEEEeccCccccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh-hccee
Confidence            56666666666665431            2235667889999999999  588999999999999999997654 77888


Q ss_pred             cCCCCeEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          638 GHSTTVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       638 ~h~~~V~sl~fsp~g~-~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      .|.+.|+++.|.+... .-|++|+.||.|.+|+....+++..++.+   ++.++++|.++..++.+.|+.++.|++-+++
T Consensus        81 ~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr  160 (362)
T KOG0294|consen   81 SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGR  160 (362)
T ss_pred             ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCc
Confidence            8999999999998642 23559999999999999999988888744   9999999999999999999999999999887


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          714 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       714 ~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      .-..+. -....+.|.|+|.|.+++.+....|-||.+.+.   ....++.. ...+.++.|. ++..|++|+.++.|.+|
T Consensus       161 ~a~v~~-L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A---~v~~~i~~-~~r~l~~~~l-~~~~L~vG~d~~~i~~~  234 (362)
T KOG0294|consen  161 VAFVLN-LKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNA---SVFREIEN-PKRILCATFL-DGSELLVGGDNEWISLK  234 (362)
T ss_pred             cceeec-cCCcceeeEEcCCCCEEEEEeccEEEEEecccH---hHhhhhhc-cccceeeeec-CCceEEEecCCceEEEe
Confidence            665554 233445599999999999999888999999876   33333322 2446666665 45679999999999999


Q ss_pred             EcCCCcEE-EeccCCCCeeEEEEe--CCCCEEEEEECCCcEEEeC
Q 003271          794 NMTENKTL-TLSAHDKLVSSLAAS--TVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       794 Dl~~~~~~-~l~~h~~~V~~la~s--pdg~~LaSgs~DG~V~IWd  835 (835)
                      |.++..+. .+.+|+..|.++.+-  |++.+|+|++.||.|+|||
T Consensus       235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd  279 (362)
T KOG0294|consen  235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWD  279 (362)
T ss_pred             ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEE
Confidence            99987776 778999999999853  4677999999999999997

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.91  E-value=5.6e-23  Score=217.59  Aligned_cols=269  Identities=17%  Similarity=0.203  Sum_probs=227.9

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ..++.+|+.|.++.+|+-+                   .-..+.+++||...|+.+.|+++...+++++.|..|+||...
T Consensus       231 ~~~ilTGG~d~~av~~d~~-------------------s~q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~  291 (506)
T KOG0289|consen  231 SSKILTGGEDKTAVLFDKP-------------------SNQILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVP  291 (506)
T ss_pred             CCcceecCCCCceEEEecc-------------------hhhhhhhccCcceEEEEEEeccchhheeecCCcceEEeeccc
Confidence            3678999999999999322                   224467889999999999999999999999999999999998


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      .......+..|.++|+.+..+|.|.||++++.|++..+.|++++........ ...-.+++++|||||- +|.+|..|+.
T Consensus       292 ~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgL-ifgtgt~d~~  370 (506)
T KOG0289|consen  292 LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGL-IFGTGTPDGV  370 (506)
T ss_pred             cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCce-EEeccCCCce
Confidence            8888888889999999999999999999999999999999999875322222 1234589999999975 8889999999


Q ss_pred             EEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEE
Q 003271          665 IRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasg  740 (835)
                      |+|||+.+...+..|.   +++..+.|+.+|-++++++.|+.|++||++..+...++.. ....+.+++|+..|.||+.+
T Consensus       371 vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~  450 (506)
T KOG0289|consen  371 VKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIA  450 (506)
T ss_pred             EEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEee
Confidence            9999999998887776   4599999999999999999999999999998887776653 33479999999999999998


Q ss_pred             e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          741 S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       741 s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      + |=.|++++-.+. ...++..+..|.+..+.+.|.....++++++.|..++++.+
T Consensus       451 g~~l~Vy~~~k~~k-~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~  505 (506)
T KOG0289|consen  451 GSDLQVYICKKKTK-SWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL  505 (506)
T ss_pred             cceeEEEEEecccc-cceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence            6 556666664442 34677788888889999999999999999999999888764

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.91  E-value=6.3e-24  Score=220.47  Aligned_cols=265  Identities=16%  Similarity=0.238  Sum_probs=220.9

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      ..+++|+.||.|++|..                   ..-.++.++.+|.+.|..|+++.  ..+++++.|++|+.|.++.
T Consensus        80 s~~aSGs~DG~VkiWnl-------------------sqR~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~  138 (433)
T KOG0268|consen   80 STVASGSCDGEVKIWNL-------------------SQRECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDG  138 (433)
T ss_pred             hhhhccccCceEEEEeh-------------------hhhhhhheeecccCceeeEEecc--cceEEecCCcceeeeeccC
Confidence            56799999999999932                   22245778899999999999987  6788999999999998765


Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                       ..+.++.+ ...+..|.-+..+..++||+.+  |.|||..... ++..+.-....|.++.|+|....+|++|+.|+.|.
T Consensus       139 -~p~~tilg-~s~~~gIdh~~~~~~FaTcGe~--i~IWD~~R~~-Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv  213 (433)
T KOG0268|consen  139 -PPLHTILG-KSVYLGIDHHRKNSVFATCGEQ--IDIWDEQRDN-PVSSMSWGADSISSVKFNPVETSILASCASDRSIV  213 (433)
T ss_pred             -Ccceeeec-cccccccccccccccccccCce--eeecccccCC-ccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence             46666643 4557778777778889998865  9999997544 57777777788999999999999999999999999


Q ss_pred             EEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C
Q 003271          667 YWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D  742 (835)
Q Consensus       667 iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D  742 (835)
                      +||++.+..++.+.  .....++|+|..-.++++..|..++.||++.. +++..+.+|.+.|.++.|+|.|.-+++|+ |
T Consensus       214 LyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD  293 (433)
T KOG0268|consen  214 LYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD  293 (433)
T ss_pred             EEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence            99999998887654  45788999998788888999999999999975 66778889999999999999999999999 9


Q ss_pred             CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       743 g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      .+|+||.++.+......++-  .-..|.++.|+-|..+|++|+.|+.|++|.....+
T Consensus       294 ksIRIf~~~~~~SRdiYhtk--RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Ase  348 (433)
T KOG0268|consen  294 KSIRIFPVNHGHSRDIYHTK--RMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASE  348 (433)
T ss_pred             ceEEEeecCCCcchhhhhHh--hhheeeEEEEeccccEEEecCCCcceeeeecchhh
Confidence            99999999887443333322  23568999999999999999999999999876544

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=8e-23  Score=218.06  Aligned_cols=281  Identities=17%  Similarity=0.254  Sum_probs=233.3

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--CCeEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCC
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~  630 (835)
                      ..+.|+||.|+|...+|++++.|++++||-++  ....+..+.-...+|.+.+|.|+|. .+++++....+++||+.+.+
T Consensus       212 s~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak  291 (514)
T KOG2055|consen  212 SHGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK  291 (514)
T ss_pred             CcCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccc
Confidence            35789999999999999999999999999775  3455666666778999999999999 89999999999999999876


Q ss_pred             ce-eEEeecCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271          631 YS-LRTFTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       631 ~~-~~~~~~h~-~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                      .. +....++. ..+..+.++++++ +|+..+..|.|.+....+++.+..++  +.+..++|+.++..|++++.+|.|++
T Consensus       292 ~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v  370 (514)
T KOG2055|consen  292 VTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV  370 (514)
T ss_pred             cccccCCCCcccchhheeEecCCCC-eEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence            42 22333333 3567788899977 66788889999999999999988776  55999999999999999999999999


Q ss_pred             EECCCCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC---CCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271          707 LDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVRVWSIGSG---SKGECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       707 wDl~t~~~i~~l~~h~~-~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~---~~~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                      ||++...+++.+....+ .-+++|.+.++.||++|+ .|.|.|||..+.   ...+++..+..-...|+++.|+++...|
T Consensus       371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiL  450 (514)
T KOG2055|consen  371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQIL  450 (514)
T ss_pred             EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhh
Confidence            99999999998874222 235678889999999999 889999997653   3346777777778899999999999998


Q ss_pred             EEEEcC--CeEEEEEcCCCcEEE-e---ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          782 LVIGCY--ETLELWNMTENKTLT-L---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       782 ~sgs~d--g~I~IwDl~~~~~~~-l---~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.++..  ..+++-.+.+..+.. +   ...-+.|+|++|+|.+.+||.|..+|.|.+|+
T Consensus       451 AiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~k  510 (514)
T KOG2055|consen  451 AIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFK  510 (514)
T ss_pred             hhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEe
Confidence            888764  589999988877662 2   23345799999999999999999999999995

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.91  E-value=2.5e-22  Score=223.08  Aligned_cols=334  Identities=21%  Similarity=0.280  Sum_probs=246.9

Q ss_pred             cCccccCCCcEEEeccCCCCEEEee-cCCC-CCCCcccccccccCCCceeE---EE-------EEecCCCCCEEEEEEeC
Q 003271          498 APNQLTDMDRFVDDGSLDDNVESFL-SPDD-ADPRDRVGRSAEVGKGFTFT---EF-------QLIPASTSKVESCHFSP  565 (835)
Q Consensus       498 ~~~~~~~~~~~l~tGs~D~~i~~~l-s~~~-~~~~~~~~~~~~~~~g~~~~---~i-------~~l~gH~~~V~sl~fSp  565 (835)
                      ....+.+.+-+++++|-|..||+|. ...+ .+...+........+...+.   ++       ..+.||.+-|+++.|+|
T Consensus       198 ~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p  277 (764)
T KOG1063|consen  198 AFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHP  277 (764)
T ss_pred             hhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEcc
Confidence            3444445678999999999999992 2222 22111111111111122221   11       34559999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCe--EE-----EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEe
Q 003271          566 DGKLLATGGHDKKAVLWCTESFT--VK-----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTF  636 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~--~i-----~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~  636 (835)
                      ++..|++++.|+++.||..++..  -+     ....+.....+...|+|++..+++-+..|..++|.......  ....+
T Consensus       278 ~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~i  357 (764)
T KOG1063|consen  278 EGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVI  357 (764)
T ss_pred             chhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeecccc
Confidence            99999999999999999876542  11     22233455688999999999999999999999999443222  23557


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEe------ecCceEEEEecCCCEEEEEEcCCcEEEEEC
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVF------KSGATQMRFQPRLGRILAAAIENYISILDV  709 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl  709 (835)
                      .+|.+.|.+++|+|.|+ ++.+.+.|-+-|+|-.-..+ .-+.+      ....+|++|-+..-.++.|..+..+++|+.
T Consensus       358 SGH~~~V~dv~W~psGe-flLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~a  436 (764)
T KOG1063|consen  358 SGHVDGVKDVDWDPSGE-FLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEA  436 (764)
T ss_pred             ccccccceeeeecCCCC-EEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecC
Confidence            89999999999999998 55588889999998665111 11221      234778888776566777777778888854


Q ss_pred             CC-------------------------------------------CeE--------------------------------
Q 003271          710 ET-------------------------------------------QVC--------------------------------  714 (835)
Q Consensus       710 ~t-------------------------------------------~~~--------------------------------  714 (835)
                      ..                                           +..                                
T Consensus       437 Pk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwP  516 (764)
T KOG1063|consen  437 PKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWP  516 (764)
T ss_pred             cHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccch
Confidence            20                                           000                                


Q ss_pred             -EEEEcCCCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          715 -RLKLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       715 -i~~l~~h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                       +.++.||...|++++.+|++++++++. .     ..|++|+..+-   ..+..+..|.-.|+.++|+||+++|++++.|
T Consensus       517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W---~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD  593 (764)
T KOG1063|consen  517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW---LQVQELEGHSLTVTRLAFSPDGRYLLSVSRD  593 (764)
T ss_pred             hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch---hhhheecccceEEEEEEECCCCcEEEEeecC
Confidence             122347888999999999999999987 2     27999999876   5666889999999999999999999999999


Q ss_pred             CeEEEEEcCCCcEE-----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          788 ETLELWNMTENKTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       788 g~I~IwDl~~~~~~-----~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .++.+|........     ....|...|+++.|+|++++++|++.|++|+||.
T Consensus       594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~  646 (764)
T KOG1063|consen  594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWE  646 (764)
T ss_pred             ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEe
Confidence            99999998554432     4678999999999999999999999999999994

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.91  E-value=7.7e-23  Score=223.49  Aligned_cols=289  Identities=18%  Similarity=0.231  Sum_probs=233.5

Q ss_pred             CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCC--EEEEEECC
Q 003271          541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS--RLATSSAD  618 (835)
Q Consensus       541 ~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~--~Latgs~D  618 (835)
                      ..|+..+...++||++.|.||...|.|.+|++|+.||+|+||.+.++.++.++. ..+.|.||+|+|.+.  .||++ .+
T Consensus       386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA-~~  463 (733)
T KOG0650|consen  386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVA-VG  463 (733)
T ss_pred             CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEE-ec
Confidence            346667778899999999999999999999999999999999999999998885 456899999999754  34443 33


Q ss_pred             CeEEEEecCCC------------------------------------CceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-
Q 003271          619 RTVRVWDTENP------------------------------------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-  661 (835)
Q Consensus       619 g~I~IWDl~t~------------------------------------~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~-  661 (835)
                      ..+.|.+..-+                                    ..-++....|...|..+.||..|.++..++.. 
T Consensus       464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~  543 (733)
T KOG0650|consen  464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS  543 (733)
T ss_pred             CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence            33444432111                                    11134555688999999999999977665543 


Q ss_pred             -CCcEEEEECCCCeeeeEe---ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEE
Q 003271          662 -NSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL  737 (835)
Q Consensus       662 -Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~L  737 (835)
                       ...|.|+++...+....|   ++.+.++.|+|...++++++. ..|+|||+...+.++.+......|.+++.+|.|..|
T Consensus       544 ~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnl  622 (733)
T KOG0650|consen  544 GNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNL  622 (733)
T ss_pred             CcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeE
Confidence             357899999876655444   466899999999888887765 789999999988888877778899999999999999


Q ss_pred             EEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC------CC-cEE---EeccC
Q 003271          738 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT------EN-KTL---TLSAH  806 (835)
Q Consensus       738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~------~~-~~~---~l~~h  806 (835)
                      +.++ |+.+..||+.-..  +...++..|...+++|+||+..+.+++|+.||++.||.-.      .+ .++   .+.+|
T Consensus       623 i~gs~d~k~~WfDldlss--kPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH  700 (733)
T KOG0650|consen  623 ILGSYDKKMCWFDLDLSS--KPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGH  700 (733)
T ss_pred             EEecCCCeeEEEEcccCc--chhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCc
Confidence            9999 9999999998654  5777888899999999999999999999999999888521      12 222   56788


Q ss_pred             CCC----eeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          807 DKL----VSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       807 ~~~----V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ...    |.++.|+|.-.+|++++.||+|++|
T Consensus       701 ~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  701 EKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeecccceEeecccCCCceEEecCCCceEEee
Confidence            765    8999999999999999999999999

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.91  E-value=2.6e-22  Score=214.72  Aligned_cols=251  Identities=19%  Similarity=0.350  Sum_probs=205.5

Q ss_pred             EEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCe----------EEEEeccCCCCeEEEEECCC-CCEEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT----------VKSTLEEHTQWITDVRFSPS-LSRLA  613 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~----------~i~~l~~h~~~V~sv~fspd-g~~La  613 (835)
                      .++...-.|.+.|+.+.+-|.. .++|+++..+.|.|||..+..          +-.++.+|...-++++|++. .-+|+
T Consensus       115 v~i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Ll  194 (422)
T KOG0264|consen  115 VEISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLL  194 (422)
T ss_pred             eEEEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEe
Confidence            3455556799999999999955 467778889999999986421          22377899998889999985 45799


Q ss_pred             EEECCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEE
Q 003271          614 TSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR  687 (835)
Q Consensus       614 tgs~Dg~I~IWDl~t~~~------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~  687 (835)
                      +++.|+.|++||+.....      +...+.+|...|..++|++....+|+++++|+.+.|||++++.             
T Consensus       195 s~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~-------------  261 (422)
T KOG0264|consen  195 SGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT-------------  261 (422)
T ss_pred             eccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC-------------
Confidence            999999999999975432      3567889999999999999989999999999999999988521             


Q ss_pred             EecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecC
Q 003271          688 FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCT  765 (835)
Q Consensus       688 fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~  765 (835)
                                              .++.....+|...|.|++|+|-+ .+||+|+ |++|++||+|+..  .+++++.+|
T Consensus       262 ------------------------~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~--~~lh~~e~H  315 (422)
T KOG0264|consen  262 ------------------------SKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLN--KPLHTFEGH  315 (422)
T ss_pred             ------------------------CCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcc--cCceeccCC
Confidence                                    22334455699999999999955 5667777 9999999999875  589999999


Q ss_pred             CCceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCc---------------EEEeccCCCCeeEEEEeCCCC-EEEEEECC
Q 003271          766 GNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENK---------------TLTLSAHDKLVSSLAASTVNG-MVASASHD  828 (835)
Q Consensus       766 ~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~---------------~~~l~~h~~~V~~la~spdg~-~LaSgs~D  828 (835)
                      ...|..|.|+|.. ..|++++.|+.+.|||+..-.               ++...+|...|..+.|+|+.. .|++++.|
T Consensus       316 ~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeD  395 (422)
T KOG0264|consen  316 EDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAED  395 (422)
T ss_pred             CcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCC
Confidence            9999999999976 567778889999999985311               135668999999999999887 67888999


Q ss_pred             CcEEEeC
Q 003271          829 KCVKIWK  835 (835)
Q Consensus       829 G~V~IWd  835 (835)
                      +.+.||+
T Consensus       396 N~LqIW~  402 (422)
T KOG0264|consen  396 NILQIWQ  402 (422)
T ss_pred             ceEEEee
Confidence            9999995

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=99.91  E-value=7.1e-23  Score=226.57  Aligned_cols=242  Identities=22%  Similarity=0.354  Sum_probs=211.9

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEecCCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd---g~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +....|.|++.+|+|++||+|..-|+++||++.+.+....++.|...|.|+.|+..   .++|++++.|..|.|||+...
T Consensus       457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rn  536 (1080)
T KOG1408|consen  457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRN  536 (1080)
T ss_pred             CcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccc
Confidence            44567999999999999999999999999999999999999999999999999863   578999999999999999987


Q ss_pred             CceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEe--------ecCceEEEEecCCCEEEEEEc
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVF--------KSGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~--------~~~i~~l~fsp~~~~ll~~s~  700 (835)
                      -..+.++.+|...|+++.|.-.| +.-+++|+.|+.|.+--..+......|        +..+..+++.|..+++++++.
T Consensus       537 y~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQ  616 (1080)
T KOG1408|consen  537 YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQ  616 (1080)
T ss_pred             cchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEec
Confidence            76788999999999999998765 345679999998875433321111111        234778999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEcC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271          701 ENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  776 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp  776 (835)
                      |..|+|||+.+++.++.|++   |.+....+...|.|.||++.. |.++.+||+.++   +|+....+|...|+.+.|.+
T Consensus       617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sg---EcvA~m~GHsE~VTG~kF~n  693 (1080)
T KOG1408|consen  617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSG---ECVAQMTGHSEAVTGVKFLN  693 (1080)
T ss_pred             ccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccc---hhhhhhcCcchheeeeeecc
Confidence            99999999999999999986   667788899999999999877 999999999999   89999999999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCC
Q 003271          777 TFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~  797 (835)
                      |-++|++++.||.|.||.+..
T Consensus       694 DCkHlISvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  694 DCKHLISVSGDGCIFVWKLPL  714 (1080)
T ss_pred             cchhheeecCCceEEEEECch
Confidence            999999999999999999854

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=1.1e-21  Score=201.89  Aligned_cols=246  Identities=19%  Similarity=0.282  Sum_probs=201.9

Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe-CCCcE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEI  665 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I  665 (835)
                      .+..+.+......|.++.|+++|.+|++++.|.+|+|||..+++. ++++..+.-.|..++|......++.+.. .|.+|
T Consensus         4 ~~~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tI   82 (311)
T KOG1446|consen    4 FRPAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-VKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTI   82 (311)
T ss_pred             cccccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-eeEeecccccccEEEEecCCceEEEccCCCCCce
Confidence            344556666778999999999999999999999999999998875 7777777778888888776555554332 48899


Q ss_pred             EEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          666 RYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                      ++.++.+.+.++.|.++   |..++.+|-++.+++++.|++|++||++..++...+...  .-..++|+|.|-++|++. 
T Consensus        83 ryLsl~dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~--~~pi~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   83 RYLSLHDNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLS--GRPIAAFDPEGLIFALANG  160 (311)
T ss_pred             EEEEeecCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecC--CCcceeECCCCcEEEEecC
Confidence            99999999999999877   889999999999999999999999999988887766533  334578999999999998 


Q ss_pred             CCeEEEEEcCCCCCc-ceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCC---eeEEEE
Q 003271          742 DELVRVWSIGSGSKG-ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL---VSSLAA  815 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~-~~i~~l~-~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~---V~~la~  815 (835)
                      .+.|++||++.-... .....+. ......+.+.|+|+|++|+.++..+.+++.|.-+|.+. .+..+...   -...+|
T Consensus       161 ~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~f  240 (311)
T KOG1446|consen  161 SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATF  240 (311)
T ss_pred             CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEE
Confidence            449999999986331 2222222 44677899999999999999999999999999999877 44444322   257789


Q ss_pred             eCCCCEEEEEECCCcEEEeC
Q 003271          816 STVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       816 spdg~~LaSgs~DG~V~IWd  835 (835)
                      +||+++|++|+.||+|.+|+
T Consensus       241 tPds~Fvl~gs~dg~i~vw~  260 (311)
T KOG1446|consen  241 TPDSKFVLSGSDDGTIHVWN  260 (311)
T ss_pred             CCCCcEEEEecCCCcEEEEE
Confidence            99999999999999999996

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.90  E-value=6.8e-23  Score=203.16  Aligned_cols=246  Identities=20%  Similarity=0.278  Sum_probs=203.0

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC---eEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEe
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD  625 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWD  625 (835)
                      -..|.+.|..+...--|+.|||++.|++|+||.+.+.   .++.+|.+|.++|+.++|..  -|.+||++++||.|.||.
T Consensus         7 dt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWk   86 (299)
T KOG1332|consen    7 DTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWK   86 (299)
T ss_pred             hhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEe
Confidence            3579999999999889999999999999999998753   57889999999999999965  599999999999999999


Q ss_pred             cCCCCce-eEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCC------eeeeEeecCceEEEEecC---C--
Q 003271          626 TENPDYS-LRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNG------SCAGVFKSGATQMRFQPR---L--  692 (835)
Q Consensus       626 l~t~~~~-~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~------~~~~~~~~~i~~l~fsp~---~--  692 (835)
                      -.++... ...+..|...|++++|.|.+ ..+|++++.||.|.|.+.+..      +....+.-++++++|.|.   |  
T Consensus        87 e~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~  166 (299)
T KOG1332|consen   87 EENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSL  166 (299)
T ss_pred             cCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccc
Confidence            9887542 35567899999999999975 346778889999999998764      223344566899999887   3  


Q ss_pred             ---------CEEEEEEcCCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCC----CEEEEEe-CCeEEEEEcCCCCCc
Q 003271          693 ---------GRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGSGSKG  756 (835)
Q Consensus       693 ---------~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspdg----~~Lasgs-Dg~I~IwDl~t~~~~  756 (835)
                               ..|++|+.|+.|+||+...+  ....++.+|...|+.++|.|.-    .+|++|+ ||+|.||..+.....
T Consensus       167 ~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  167 VDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             cccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                     56999999999999999875  3344588999999999999964    5789999 999999988743222


Q ss_pred             ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      -....+......+..+.|+..|..|++++.|+.|.+|.-.
T Consensus       247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            2333344456789999999999999999999999999754

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.90  E-value=2.2e-20  Score=200.89  Aligned_cols=294  Identities=18%  Similarity=0.291  Sum_probs=232.2

Q ss_pred             ccccCCCceeEEEEEecCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEE
Q 003271          536 SAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT  614 (835)
Q Consensus       536 ~~~~~~g~~~~~i~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Lat  614 (835)
                      .|....+..++....++.+. .-|.|++|.++|. +++|..+|.|.||+..+.+..+....|.+.|.+++...+|.+|- 
T Consensus       226 Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~GtllS-  303 (626)
T KOG2106|consen  226 FWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLLS-  303 (626)
T ss_pred             EEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEee-
Confidence            34455555555666666554 5699999999985 67999999999999999888887779999999999999986555 


Q ss_pred             EECCCeEEEEecCCCC----------------------c-----------------eeEEeecCCCCeEEEEEcCCCCcE
Q 003271          615 SSADRTVRVWDTENPD----------------------Y-----------------SLRTFTGHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       615 gs~Dg~I~IWDl~t~~----------------------~-----------------~~~~~~~h~~~V~sl~fsp~g~~l  655 (835)
                      |+.|..|..||-.-.+                      .                 ......+|......++.+|+.+ .
T Consensus       304 GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~-q  382 (626)
T KOG2106|consen  304 GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKN-Q  382 (626)
T ss_pred             cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChh-h
Confidence            9999999999832100                      0                 0012345788889999999865 6


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271          656 LCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE  735 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~  735 (835)
                      +++|+.|+.+++|+-...+..+.+..+..++.|+|.+ .+++|+..|...+.|.++...+..-.. ..+++++.|+|+|.
T Consensus       383 ~~T~gqdk~v~lW~~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~  460 (626)
T KOG2106|consen  383 LLTCGQDKHVRLWNDHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGA  460 (626)
T ss_pred             eeeccCcceEEEccCCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcCCCC
Confidence            6799999999999954455556677889999999998 999999999999999999666655554 88999999999999


Q ss_pred             EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc---------------
Q 003271          736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK---------------  799 (835)
Q Consensus       736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~---------------  799 (835)
                      +|+.|+ |+.|+||.+..... +....-.++..+|+.+.|++|+.+|.+-+.|-.|..|....-+               
T Consensus       461 ~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c  539 (626)
T KOG2106|consen  461 FLAVGSHDNHIYIYRVSANGR-KYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTC  539 (626)
T ss_pred             EEEEecCCCeEEEEEECCCCc-EEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEE
Confidence            999999 99999999987643 2222334455899999999999998888888888888432100               


Q ss_pred             -------------------------------------------------EEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271          800 -------------------------------------------------TLTLSAHDKLVSSLAASTVNGMVASASHDKC  830 (835)
Q Consensus       800 -------------------------------------------------~~~l~~h~~~V~~la~spdg~~LaSgs~DG~  830 (835)
                                                                       .....+|.+.|++++|..+..+|++.+.|.+
T Consensus       540 ~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~S  619 (626)
T KOG2106|consen  540 TLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTS  619 (626)
T ss_pred             EEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCce
Confidence                                                             0134468888999999998888888889999


Q ss_pred             EEEeC
Q 003271          831 VKIWK  835 (835)
Q Consensus       831 V~IWd  835 (835)
                      |..|+
T Consensus       620 i~qW~  624 (626)
T KOG2106|consen  620 IMQWR  624 (626)
T ss_pred             EEEEE
Confidence            99996

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.89  E-value=3e-22  Score=224.89  Aligned_cols=273  Identities=20%  Similarity=0.379  Sum_probs=214.1

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC----eEEEEeccC---CCCeEEEEECC-CCCEEEEEECCCeEEEEecCC
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEH---TQWITDVRFSP-SLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~i~~l~~h---~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t  628 (835)
                      .+.+|...++-.-|+.++. ..++||.+...    ++...++..   ...+.+|+|.. +.++|||++..|.|.+||+..
T Consensus        41 ~~nAIs~nr~~~qiv~AGr-s~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk  119 (839)
T KOG0269|consen   41 KANAISVNRDINQIVVAGR-SLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSNLIATCSTNGVISVWDLNK  119 (839)
T ss_pred             ccceEeecCCcceeEEecc-cceeeEeeCcccCCcceeeecccccceeeehhhcccccchhhhheeecCCCcEEEEecCc
Confidence            3556677788777887775 46778866532    222222211   12455688875 467999999999999999986


Q ss_pred             --CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCC-EEEEEEcCC
Q 003271          629 --PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLG-RILAAAIEN  702 (835)
Q Consensus       629 --~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~-~ll~~s~dg  702 (835)
                        ....+..|..|...|.+++|++...++|++|+.||+|++||++..+...++.+   .+..+.|+|... .|+++...|
T Consensus       120 ~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG  199 (839)
T KOG0269|consen  120 SIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSG  199 (839)
T ss_pred             cccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCc
Confidence              23345678899999999999999999999999999999999998887776654   488999999764 555666679


Q ss_pred             cEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271          703 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       703 ~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~  780 (835)
                      .+.+||++.. ++...+..|.++|.|+.|+|++.+||+|+ |+.|+|||+.+... ..++++. ...+|.++.|-|...+
T Consensus       200 ~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~-~~~~tIn-Tiapv~rVkWRP~~~~  277 (839)
T KOG0269|consen  200 YLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRA-KPKHTIN-TIAPVGRVKWRPARSY  277 (839)
T ss_pred             eEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCc-cceeEEe-ecceeeeeeeccCccc
Confidence            9999999965 67778889999999999999999999999 99999999987543 3444443 3678999999999876


Q ss_pred             EEEEEc---CCeEEEEEcCCCcEE--EeccCCCCeeEEEEeC-CCCEEEEEECCCcEE
Q 003271          781 LLVIGC---YETLELWNMTENKTL--TLSAHDKLVSSLAAST-VNGMVASASHDKCVK  832 (835)
Q Consensus       781 L~sgs~---dg~I~IwDl~~~~~~--~l~~h~~~V~~la~sp-dg~~LaSgs~DG~V~  832 (835)
                      .++.+.   |-.|+|||++..-+-  .+..|...++.++|.. |...|.+++.||+|.
T Consensus       278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~  335 (839)
T KOG0269|consen  278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVL  335 (839)
T ss_pred             hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHH
Confidence            555443   559999999876543  7889999999999975 445889999999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=2.6e-22  Score=199.04  Aligned_cols=241  Identities=23%  Similarity=0.394  Sum_probs=199.8

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEEC
Q 003271          594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSI  670 (835)
Q Consensus       594 ~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fs-p~g~~ll~sgs~Dg~I~iwDl  670 (835)
                      ..|.+.|.++...--|++|+|++.|++|+|+.+++..  ..+..+.+|.++|..++|. |.-..+|++|+.||.|.||.-
T Consensus         8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke   87 (299)
T KOG1332|consen    8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE   87 (299)
T ss_pred             hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence            4689999998888889999999999999999998765  5678999999999999995 555669999999999999999


Q ss_pred             CCCeeee-----EeecCceEEEEecCC--CEEEEEEcCCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCC---C---
Q 003271          671 NNGSCAG-----VFKSGATQMRFQPRL--GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTS---G---  734 (835)
Q Consensus       671 ~s~~~~~-----~~~~~i~~l~fsp~~--~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~fspd---g---  734 (835)
                      ..+.-.+     .+...+++++|.|.+  -.|++++.||.|.|++.+..   ........|.-.|++++|.|.   |   
T Consensus        88 ~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~  167 (299)
T KOG1332|consen   88 ENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLV  167 (299)
T ss_pred             CCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCcccc
Confidence            9885433     234668999998874  56788999999999988754   333455679999999999986   4   


Q ss_pred             --------CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEEcCCC---
Q 003271          735 --------EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTEN---  798 (835)
Q Consensus       735 --------~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg----~~L~sgs~dg~I~IwDl~~~---  798 (835)
                              +.|++|+ |..|+||+..++ ....-.++.+|...|..++|.|.-    .+|++++.||+|.||.....   
T Consensus       168 ~~~~~~~~krlvSgGcDn~VkiW~~~~~-~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~  246 (299)
T KOG1332|consen  168 DQGPAAKVKRLVSGGCDNLVKIWKFDSD-SWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEP  246 (299)
T ss_pred             ccCcccccceeeccCCccceeeeecCCc-chhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCc
Confidence                    4588887 999999999886 334445689999999999999974    57999999999999987522   


Q ss_pred             -cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          799 -KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       799 -~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                       +...+......+..+.|+..|.+|+.++.|+.|.+|+
T Consensus       247 wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk  284 (299)
T KOG1332|consen  247 WKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK  284 (299)
T ss_pred             ccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence             1223445678899999999999999999999999995

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=5e-22  Score=212.65  Aligned_cols=238  Identities=22%  Similarity=0.276  Sum_probs=202.2

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC------
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN------  628 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t------  628 (835)
                      .++|.|++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+-|+.+|+||+.||.|.+|.+..      
T Consensus        81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~  160 (476)
T KOG0646|consen   81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADN  160 (476)
T ss_pred             ccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeeccccc
Confidence            56799999999999999998999999999999999999999999999999999999999999999999998642      


Q ss_pred             --CCceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCc
Q 003271          629 --PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       629 --~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~  703 (835)
                        ...+++.+..|.-+|+++...+.+ +..+++++.|.+|++||+..+..+..+.  ..+.+++++|.+..+++|+.+|.
T Consensus       161 ~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~  240 (476)
T KOG0646|consen  161 DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGK  240 (476)
T ss_pred             CCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcce
Confidence              224578899999999999987753 4468899999999999999999887654  55899999999999999999999


Q ss_pred             EEEEECCCC----------------eEEEEEcCCCC--CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271          704 ISILDVETQ----------------VCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC  764 (835)
Q Consensus       704 I~IwDl~t~----------------~~i~~l~~h~~--~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~  764 (835)
                      |.+.++...                ..+..+.+|.+  .|+|++++-||.+|++|+ ||.|+|||+.+.   .+++++..
T Consensus       241 I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~---Q~iRtl~~  317 (476)
T KOG0646|consen  241 IFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSK---QCIRTLQT  317 (476)
T ss_pred             EEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchH---HHHHHHhh
Confidence            999887532                34556778888  999999999999999999 999999999887   78888776


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcC-CeEEEEEc
Q 003271          765 TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM  795 (835)
Q Consensus       765 ~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl  795 (835)
                      ..++|+.+.+.|-.+.++.+... ..+-.|++
T Consensus       318 ~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l  349 (476)
T KOG0646|consen  318 SKGPVTNLQINPLERGIILFEHKQPSLPNPHL  349 (476)
T ss_pred             hccccceeEeeccccceecccccCccCCchHh
Confidence            78899999997765544443222 24444443

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=4.2e-21  Score=219.41  Aligned_cols=274  Identities=14%  Similarity=0.228  Sum_probs=216.4

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~  630 (835)
                      .+|+...+.|+|.++|++|++++.||.|++|+...- +.-.++..+...|.+++..  +.+|++|+.+++|.+|.+.++.
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~~   87 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSGE   87 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeec--ccceEEeeccceEEEeeCCCCC
Confidence            478999999999999999999999999999987665 4444454478888888875  4599999999999999998876


Q ss_pred             ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAIENYISIL  707 (835)
Q Consensus       631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~~ll~~s~dg~I~Iw  707 (835)
                      . -..+....-++.+++|+-+|+ .++.|+.|-.|++.++.+......+   ++++.++.|+|.+++|++.+.||.|+||
T Consensus        88 ~-~~iL~Rftlp~r~~~v~g~g~-~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw  165 (933)
T KOG1274|consen   88 E-DTILARFTLPIRDLAVSGSGK-MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIW  165 (933)
T ss_pred             c-cceeeeeeccceEEEEecCCc-EEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEE
Confidence            4 334555667899999999977 6668888999999999877655554   5679999999999999999999999999


Q ss_pred             ECCCCeEEEEEcCC--------CCCeEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271          708 DVETQVCRLKLQGH--------KNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  778 (835)
Q Consensus       708 Dl~t~~~i~~l~~h--------~~~I~sl~fspdg-~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg  778 (835)
                      |+.++.+...+.+-        ...+..++|+|+| .+++.+.|+.|++|+..+......+ ....+...+..+.|+|.|
T Consensus       166 ~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~L-r~~~~ss~~~~~~wsPnG  244 (933)
T KOG1274|consen  166 DLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKL-RDKLSSSKFSDLQWSPNG  244 (933)
T ss_pred             EcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheee-cccccccceEEEEEcCCC
Confidence            99998877766531        3456678999995 5555555999999999887432222 223344559999999999


Q ss_pred             CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          779 PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       779 ~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .||++++.+|.|.|||+++...   ......|++++|.|+...|-.-..-|+..+
T Consensus       245 ~YiAAs~~~g~I~vWnv~t~~~---~~~~~~Vc~~aw~p~~n~it~~~~~g~~~~  296 (933)
T KOG1274|consen  245 KYIAASTLDGQILVWNVDTHER---HEFKRAVCCEAWKPNANAITLITALGTLGV  296 (933)
T ss_pred             cEEeeeccCCcEEEEecccchh---ccccceeEEEecCCCCCeeEEEeecccccc
Confidence            9999999999999999998322   333567999999999886655544554433

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=4e-21  Score=196.20  Aligned_cols=255  Identities=20%  Similarity=0.323  Sum_probs=197.0

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC----CCeEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEe
Q 003271          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE----SFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD  625 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~----t~~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWD  625 (835)
                      .+|.+-|.|+.|...|+.+|+|+.|++|+|||.+    +..+....+.|.+.|..|.|.+  -|..+|+++.|++|.||.
T Consensus        10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE   89 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE   89 (361)
T ss_pred             cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence            5799999999999999999999999999999954    4567778889999999999965  389999999999999997


Q ss_pred             cCCCC--------ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEE
Q 003271          626 TENPD--------YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRIL  696 (835)
Q Consensus       626 l~t~~--------~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll  696 (835)
                      -....        ....++....+.|++|.|.|.. ...+++++.||.||||+.-..-.+                    
T Consensus        90 E~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nL--------------------  149 (361)
T KOG2445|consen   90 EQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNL--------------------  149 (361)
T ss_pred             ecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCcccc--------------------
Confidence            52111        1234566677889999999863 235778889999999987543221                    


Q ss_pred             EEEcCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC---CCEEEEEeCC------eEEEEEcCCCC-CcceEEEeec
Q 003271          697 AAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS---GEYLASVSDE------LVRVWSIGSGS-KGECIHELSC  764 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~fspd---g~~LasgsDg------~I~IwDl~t~~-~~~~i~~l~~  764 (835)
                              .-|.+...-  .+.....+..+..|+.|++.   ..+|++|+|.      .++||...... +...+.++..
T Consensus       150 --------s~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d  221 (361)
T KOG2445|consen  150 --------SQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPD  221 (361)
T ss_pred             --------ccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCC
Confidence                    112211100  00011125667789999874   4678888865      89999987664 4567778889


Q ss_pred             CCCceEEEEEeCC----CCEEEEEEcCCeEEEEEcCCCc--------------------EE-EeccCCCCeeEEEEeCCC
Q 003271          765 TGNKFHSCVFHPT----FPSLLVIGCYETLELWNMTENK--------------------TL-TLSAHDKLVSSLAASTVN  819 (835)
Q Consensus       765 ~~~~V~sv~fspd----g~~L~sgs~dg~I~IwDl~~~~--------------------~~-~l~~h~~~V~~la~spdg  819 (835)
                      |..+|+.++|.|+    ...|++++.|| |+||++....                    .+ .+..|.+.|+.+.|+-.|
T Consensus       222 ~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG  300 (361)
T KOG2445|consen  222 HTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG  300 (361)
T ss_pred             CCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee
Confidence            9999999999996    34688999999 9999987311                    11 467899999999999999


Q ss_pred             CEEEEEECCCcEEEeC
Q 003271          820 GMVASASHDKCVKIWK  835 (835)
Q Consensus       820 ~~LaSgs~DG~V~IWd  835 (835)
                      .+|++.|+||.||+|+
T Consensus       301 tiLsStGdDG~VRLWk  316 (361)
T KOG2445|consen  301 TILSSTGDDGCVRLWK  316 (361)
T ss_pred             eEEeecCCCceeeehh
Confidence            9999999999999995

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.89  E-value=2e-21  Score=208.33  Aligned_cols=234  Identities=19%  Similarity=0.353  Sum_probs=200.9

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~  632 (835)
                      .+-|.+|.+.|||+.|++|+.-.+|.|||+.....  ...+....-..++++.+||.+..++++.||.|.|||+.+.. .
T Consensus       465 dnyiRSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~-~  543 (705)
T KOG0639|consen  465 DNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQT-L  543 (705)
T ss_pred             ccceeeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccce-e
Confidence            45699999999999999999999999999975443  34444444567889999999999999999999999999765 5


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--EeecCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKSGATQMRFQPRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~  710 (835)
                      ++.|.+|.+.+.||+++++|. -|.+|+-|.+|+.||+++++.+.  .|...|.++.++|.+.++++|-.++.+.|....
T Consensus       544 VrqfqGhtDGascIdis~dGt-klWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~s  622 (705)
T KOG0639|consen  544 VRQFQGHTDGASCIDISKDGT-KLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTS  622 (705)
T ss_pred             eecccCCCCCceeEEecCCCc-eeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecC
Confidence            899999999999999999987 45699999999999999988764  456779999999999999999999999998876


Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003271          711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET  789 (835)
Q Consensus       711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~  789 (835)
                      ..+ .+.+.-|.+.|.++.|.+.|+++++.+ |+.+..|...-+   ..+.... ....|.+|.++.+.++|++|+.|..
T Consensus       623 kp~-kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyG---asiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkk  697 (705)
T KOG0639|consen  623 KPE-KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKK  697 (705)
T ss_pred             Ccc-ceeecccccEEEEEEecccCceeeecCchhhhhhccCccc---cceeecc-ccCcceeeeeccCceEEEecCCCcc
Confidence            543 345556999999999999999999988 999999998877   4555444 3678999999999999999999988


Q ss_pred             EEEEEc
Q 003271          790 LELWNM  795 (835)
Q Consensus       790 I~IwDl  795 (835)
                      -.||.+
T Consensus       698 ATVYeV  703 (705)
T KOG0639|consen  698 ATVYEV  703 (705)
T ss_pred             eEEEEE
Confidence            888765

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=4.2e-23  Score=229.92  Aligned_cols=251  Identities=22%  Similarity=0.375  Sum_probs=221.5

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl  646 (835)
                      +.+++.+..+-.++|||...      +..|...|.|+..-..++.+++|+.|..+-+|.+..... +..+.+|..+|.+|
T Consensus         4 ~~~~m~~~~~t~Lr~~~~~~------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~-i~S~~~hespIeSl   76 (825)
T KOG0267|consen    4 MEFLMKTKRATKLRVWDTRE------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNA-ITSLTGHESPIESL   76 (825)
T ss_pred             ccccceeeeeeccccccchh------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCch-hheeeccCCcceee
Confidence            33455555666788888654      446888888988877789999999999999999987664 56689999999999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~  723 (835)
                      .|++. +.+|++|+.+|+|++||++..+.++++.++   +..+.|+|.+.+++.++.|..+.+||++...|.+.+.+|..
T Consensus        77 ~f~~~-E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~  155 (825)
T KOG0267|consen   77 TFDTS-ERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTR  155 (825)
T ss_pred             ecCcc-hhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcc
Confidence            99998 458889999999999999999988877654   88899999999999999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-
Q 003271          724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-  801 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-  801 (835)
                      .|.++.|+|+|++++.++ |.+++|||+..+   +.+.+|..|...+.++.|+|..-.++.|+.|++|++||+++-+.+ 
T Consensus       156 vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ag---k~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~  232 (825)
T KOG0267|consen  156 VVDVLRLSPDGRWVASGGEDNTVKIWDLTAG---KLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVIS  232 (825)
T ss_pred             eeEEEeecCCCceeeccCCcceeeeeccccc---ccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEee
Confidence            999999999999999999 799999999888   888999999999999999999999999999999999999988887 


Q ss_pred             EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271          802 TLSAHDKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       802 ~l~~h~~~V~~la~spdg~~LaSgs~D  828 (835)
                      ........|.+++|++++..+++|..+
T Consensus       233 s~~~~~~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  233 SGKPETDGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             ccCCccCCceeeeecCCceeeecCchh
Confidence            455557889999999999998888754

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=99.88  E-value=4.9e-20  Score=208.54  Aligned_cols=278  Identities=19%  Similarity=0.306  Sum_probs=219.6

Q ss_pred             cCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          552 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +...+.|+++. +|..  +.++.|+.+|.+.||++.+++.+.++.++...|+++.=+|--..++.|..+|+|.|+++..+
T Consensus       156 ~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~d  234 (910)
T KOG1539|consen  156 KVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFD  234 (910)
T ss_pred             eccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccC
Confidence            33333477764 4433  34888999999999999999999999999999999999998889999999999999999987


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEE
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      +. +..+....+.|++++|..||+.++++++..|.+.+||++..+......    +.+....|.+....+++++.|+.++
T Consensus       235 ki-l~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk  313 (910)
T KOG1539|consen  235 KI-LMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLK  313 (910)
T ss_pred             cE-EEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCcee
Confidence            74 677775569999999999999999999999999999999887665443    3355555555555555555555444


Q ss_pred             EE--ECCCC-----------------------------------------------------------------------
Q 003271          706 IL--DVETQ-----------------------------------------------------------------------  712 (835)
Q Consensus       706 Iw--Dl~t~-----------------------------------------------------------------------  712 (835)
                      +|  |...+                                                                       
T Consensus       314 ~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~  393 (910)
T KOG1539|consen  314 VWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKL  393 (910)
T ss_pred             EEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhh
Confidence            33  31000                                                                       


Q ss_pred             ---------------------------------------eE-EEEEcCCC------CCeEEEEEcCCCCEEEEEe-CCeE
Q 003271          713 ---------------------------------------VC-RLKLQGHK------NQVHSVCWNTSGEYLASVS-DELV  745 (835)
Q Consensus       713 ---------------------------------------~~-i~~l~~h~------~~I~sl~fspdg~~Lasgs-Dg~I  745 (835)
                                                             .. .+.+ .+.      ..+++++.+++|++.+.|+ .|.|
T Consensus       394 k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L-~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~I  472 (910)
T KOG1539|consen  394 KLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVL-DPKRFKKDDINATAVCVSFCGNFVFIGYSKGTI  472 (910)
T ss_pred             cCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEe-cCccccccCcceEEEEEeccCceEEEeccCCeE
Confidence                                                   00 0000 111      4578899999999999988 9999


Q ss_pred             EEEEcCCCCCcceEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE----------------------
Q 003271          746 RVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT----------------------  800 (835)
Q Consensus       746 ~IwDl~t~~~~~~i~~l---~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~----------------------  800 (835)
                      .+|++.++   .....+   ..|..+|+.++....++.+++++.+|.+++||..+...                      
T Consensus       473 d~fNmQSG---i~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~  549 (910)
T KOG1539|consen  473 DRFNMQSG---IHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLL  549 (910)
T ss_pred             EEEEcccC---eeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhh
Confidence            99999988   444445   57899999999999999999999999999999866431                      


Q ss_pred             -------------------E-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          801 -------------------L-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       801 -------------------~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                                         + .+.+|.+.|++++|||||++|++++.|++|++||
T Consensus       550 a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wD  604 (910)
T KOG1539|consen  550 AIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWD  604 (910)
T ss_pred             hhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEe
Confidence                               0 2356999999999999999999999999999998

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.88  E-value=1.4e-21  Score=215.39  Aligned_cols=274  Identities=23%  Similarity=0.334  Sum_probs=209.5

Q ss_pred             EEEEeC---CCCEEEEEeCCCeEEEEEcCCCeEE------EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271          560 SCHFSP---DGKLLATGGHDKKAVLWCTESFTVK------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       560 sl~fSp---dg~~Lasgs~Dg~I~VWd~~t~~~i------~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~  630 (835)
                      ++.|++   ....|+.+.+||.|.++|.......      .....|...|.++.|.|....|++++.|.++++||+.+.+
T Consensus        54 ~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~  133 (720)
T KOG0321|consen   54 ADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSR  133 (720)
T ss_pred             cccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccce
Confidence            356665   3457999999999999998754332      4456799999999999987899999999999999999876


Q ss_pred             ceeE--EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----------eEee------------------
Q 003271          631 YSLR--TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----------GVFK------------------  680 (835)
Q Consensus       631 ~~~~--~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~----------~~~~------------------  680 (835)
                      . ..  .+.+|...|.+++|.|.+..+||+|+.||.|.|||++....-          ..++                  
T Consensus       134 l-~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  134 L-VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             e-ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence            4 43  489999999999999999999999999999999999743200          0000                  


Q ss_pred             --cCceE---EEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEE--------cCC---CCCeEEEEEcCCCCEEEEEe-C
Q 003271          681 --SGATQ---MRFQPRLGRILAAAI-ENYISILDVETQVCRLKL--------QGH---KNQVHSVCWNTSGEYLASVS-D  742 (835)
Q Consensus       681 --~~i~~---l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l--------~~h---~~~I~sl~fspdg~~Lasgs-D  742 (835)
                        ..+..   +.+..|...|++++. |+.|+|||+++.......        ..|   ...+.+++.+..|.+|++.+ |
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD  292 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTD  292 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecC
Confidence              11222   445667788888776 999999999976554332        223   33577888888888877665 9


Q ss_pred             CeEEEEEcCCCCCcceEEEeecCCCc--eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCC
Q 003271          743 ELVRVWSIGSGSKGECIHELSCTGNK--FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTV  818 (835)
Q Consensus       743 g~I~IwDl~t~~~~~~i~~l~~~~~~--V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spd  818 (835)
                      +.|++|++.+... ..+..+.++...  ...-..+|++.+|++|+.|...++|.+..-..-  .+.+|.-.|++++|.|.
T Consensus       293 ~sIy~ynm~s~s~-sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS  371 (720)
T KOG0321|consen  293 NSIYFYNMRSLSI-SPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPS  371 (720)
T ss_pred             CcEEEEeccccCc-CchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccc
Confidence            9999999987532 333333333222  223356899999999999999999999876643  77899999999999984


Q ss_pred             C-CEEEEEECCCcEEEeC
Q 003271          819 N-GMVASASHDKCVKIWK  835 (835)
Q Consensus       819 g-~~LaSgs~DG~V~IWd  835 (835)
                      . .-+++|++|-+++||+
T Consensus       372 ~~t~v~TcSdD~~~kiW~  389 (720)
T KOG0321|consen  372 ATTPVATCSDDFRVKIWR  389 (720)
T ss_pred             cCCCceeeccCcceEEEe
Confidence            3 3577889999999996

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=7.9e-21  Score=192.65  Aligned_cols=293  Identities=20%  Similarity=0.321  Sum_probs=218.3

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCC--cccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEE
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPR--DRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVL  581 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~--~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~V  581 (835)
                      ..+++.+|+.|+.|.+|+.....+-.  ..+.+.      ........-.+|.-.|.++.|-| |.-.+.+++.|.+++|
T Consensus        55 egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~------~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKV  128 (397)
T KOG4283|consen   55 EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKH------KCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKV  128 (397)
T ss_pred             cceEEeecCCCccEEEEEeccccchhhccceehe------eeeccccCCccceeeeeeeEEeeecCceeecccccceEEE
Confidence            35799999999999999665543221  111110      00011112347888999999999 6668899999999999


Q ss_pred             EEcCCCeEEEEeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          582 WCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       582 Wd~~t~~~i~~l~~h~~~V~sv~fspd---g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      ||+.+......|+ .++.|++-+++|-   ..++|+|..|-.|++.|+.++.+ .+++.+|...|.++.|+|..+.+|++
T Consensus       129 WDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~-sH~LsGHr~~vlaV~Wsp~~e~vLat  206 (397)
T KOG4283|consen  129 WDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSF-SHTLSGHRDGVLAVEWSPSSEWVLAT  206 (397)
T ss_pred             eecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcc-eeeeccccCceEEEEeccCceeEEEe
Confidence            9999998888875 5678999999983   44677888888999999999885 89999999999999999999999999


Q ss_pred             EeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCCCC
Q 003271          659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGE  735 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~fspdg~  735 (835)
                      |+.||.|++||++...                           |.+++.|...++   .+..-..|.+.|..++|..++.
T Consensus       207 gsaDg~irlWDiRras---------------------------gcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~  259 (397)
T KOG4283|consen  207 GSADGAIRLWDIRRAS---------------------------GCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDAR  259 (397)
T ss_pred             cCCCceEEEEEeeccc---------------------------ceeEEeecccCccCccccccccccceeeeeeecccch
Confidence            9999999999998531                           222333333221   1222345899999999999999


Q ss_pred             EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC----ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCC
Q 003271          736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL  809 (835)
Q Consensus       736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~----~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~  809 (835)
                      ++++++ |..+++|+..++.....-..-..|..    .+. +. +-+...++..-.++.+.++++-++..+ .+..|-..
T Consensus       260 ~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k~  337 (397)
T KOG4283|consen  260 YLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLKR  337 (397)
T ss_pred             hhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeecccce
Confidence            999998 99999999988753211111111111    111 22 334444555555689999999888877 67789899


Q ss_pred             eeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          810 VSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       810 V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      |.|.++-|+-....+|..|+.|..|
T Consensus       338 i~c~~~~~~fq~~~tg~~d~ni~~w  362 (397)
T KOG4283|consen  338 INCAAYRPDFEQCFTGDMNGNIYMW  362 (397)
T ss_pred             eeEEeecCchhhhhccccCCccccc
Confidence            9999999998899999999999988

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.88  E-value=3.8e-21  Score=205.86  Aligned_cols=249  Identities=19%  Similarity=0.330  Sum_probs=200.3

Q ss_pred             ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEE
Q 003271          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAV  580 (835)
Q Consensus       502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~  580 (835)
                      +.....+|++++..+.+-+|+...........+         .+.+-..+.+|.+.-++++|++... .|++|+.|++|+
T Consensus       133 mPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~---------~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~  203 (422)
T KOG0264|consen  133 MPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG---------ECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTIC  203 (422)
T ss_pred             CCCCCcEEEecCCCCCEEEEEeccCCCcccccc---------cCCCceEEEeecccccccccccccceeEeeccCCCcEE
Confidence            445567899999999999996655543322221         3445567889999899999999543 789999999999


Q ss_pred             EEEcCCC-------eEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCC-CCceeEEeecCCCCeEEEEEcCC
Q 003271          581 LWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPS  651 (835)
Q Consensus       581 VWd~~t~-------~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t-~~~~~~~~~~h~~~V~sl~fsp~  651 (835)
                      +||+...       .....+.+|...|.+++|++- ..+|++++.|+.+.|||+++ ...+.....+|...|.|++|+|-
T Consensus       204 lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~  283 (422)
T KOG0264|consen  204 LWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPF  283 (422)
T ss_pred             EEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCC
Confidence            9998643       234677899999999999994 66889999999999999996 33346778899999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 003271          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN  731 (835)
Q Consensus       652 g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs  731 (835)
                      +..+|++|+.|++|++||+++.+                                      .+++++.+|...|.+|.|+
T Consensus       284 ~~~ilAT~S~D~tV~LwDlRnL~--------------------------------------~~lh~~e~H~dev~~V~WS  325 (422)
T KOG0264|consen  284 NEFILATGSADKTVALWDLRNLN--------------------------------------KPLHTFEGHEDEVFQVEWS  325 (422)
T ss_pred             CCceEEeccCCCcEEEeechhcc--------------------------------------cCceeccCCCcceEEEEeC
Confidence            99999999999999999998632                                      2567788899999999999


Q ss_pred             CCCC-EEEEEe-CCeEEEEEcCCCC-----------CcceEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEEcCC
Q 003271          732 TSGE-YLASVS-DELVRVWSIGSGS-----------KGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTE  797 (835)
Q Consensus       732 pdg~-~Lasgs-Dg~I~IwDl~t~~-----------~~~~i~~l~~~~~~V~sv~fspdg~~L~-sgs~dg~I~IwDl~~  797 (835)
                      |... .|++++ |+.+.|||+..-.           ..+.+....+|...|..+.|+|..++++ +++.|+.+.||.+..
T Consensus       326 Ph~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  326 PHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             CCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            9765 455555 9999999997532           2345677889999999999999998754 566778999999864

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.88  E-value=4.4e-21  Score=204.84  Aligned_cols=286  Identities=15%  Similarity=0.230  Sum_probs=226.4

Q ss_pred             CcccCCCCCceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec
Q 003271          473 TLQHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP  552 (835)
Q Consensus       473 ~~~~~~s~~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~  552 (835)
                      +..++.....+.+.|.+..               .++.+++.|+++++|-.                 +|..-..+..+.
T Consensus       207 Na~~ps~~~I~sv~FHp~~---------------plllvaG~d~~lrifqv-----------------DGk~N~~lqS~~  254 (514)
T KOG2055|consen  207 NAAHPSHGGITSVQFHPTA---------------PLLLVAGLDGTLRIFQV-----------------DGKVNPKLQSIH  254 (514)
T ss_pred             ccCCcCcCCceEEEecCCC---------------ceEEEecCCCcEEEEEe-----------------cCccChhheeee
Confidence            3334444455566665544               68899999999999922                 122223455566


Q ss_pred             CCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEE--EEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          553 ASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK--STLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i--~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      -...+|.+++|.|+|. .+++++....+++||+.+.+..  ..+.++. ..+.....++++.+|+..+..|.|.|....+
T Consensus       255 l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT  334 (514)
T KOG2055|consen  255 LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT  334 (514)
T ss_pred             eccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence            6677899999999999 8999999999999999987654  3334444 3577888999999999999999999999988


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec----CceEEEEecCCCEEEEEEcCCcE
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----GATQMRFQPRLGRILAAAIENYI  704 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----~i~~l~fsp~~~~ll~~s~dg~I  704 (835)
                      +.. +..++ -.+.|..++|+.+++.++++ +.+|.|++||++...+++.+..    +.+.+|.++++.++++|+..|.|
T Consensus       335 ~el-i~s~K-ieG~v~~~~fsSdsk~l~~~-~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiV  411 (514)
T KOG2055|consen  335 KEL-ITSFK-IEGVVSDFTFSSDSKELLAS-GGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIV  411 (514)
T ss_pred             hhh-hheee-eccEEeeEEEecCCcEEEEE-cCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceE
Confidence            764 44444 45789999999998766655 4588999999999999988863    25678888999999999999999


Q ss_pred             EEEECCC------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEe---ecCCCceEEE
Q 003271          705 SILDVET------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHEL---SCTGNKFHSC  772 (835)
Q Consensus       705 ~IwDl~t------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l---~~~~~~V~sv  772 (835)
                      .|||.++      .+++..+..-...|+++.|++|..+|+.++   ++.+++-.+.+.   .....+   ...-+.|+|+
T Consensus       412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~---TVFsNfP~~n~~vg~vtc~  488 (514)
T KOG2055|consen  412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSC---TVFSNFPTSNTKVGHVTCM  488 (514)
T ss_pred             EEeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccce---eeeccCCCCCCcccceEEE
Confidence            9999763      467777777788999999999999999988   678999988776   233333   3344678999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          773 VFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      +|+|.+.++++|..+|.|.+|.+.
T Consensus       489 aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  489 AFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             EecCCCceEEeecCCCceeeEeec
Confidence            999999999999999999999874

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=5.7e-23  Score=228.86  Aligned_cols=237  Identities=26%  Similarity=0.422  Sum_probs=215.4

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      +.+.+-.|...|.|+..-..++.+++|+.|..+-+|.+.....+..+.+|..+|.+|.|+++..+|++|+.+|+|++||+
T Consensus        20 ~~~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDl   99 (825)
T KOG0267|consen   20 DTREFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDL   99 (825)
T ss_pred             cchhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeeh
Confidence            34455689999999999778899999999999999999888888889999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCc
Q 003271          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~  703 (835)
                      +..+. ++++.+|...+.++.|+|-+. ++++|+.|+.+++||++...|.+.++++   +..++|+|+|.+++.++.|..
T Consensus       100 eeAk~-vrtLtgh~~~~~sv~f~P~~~-~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~t  177 (825)
T KOG0267|consen  100 EEAKI-VRTLTGHLLNITSVDFHPYGE-FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNT  177 (825)
T ss_pred             hhhhh-hhhhhccccCcceeeeccceE-EeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcce
Confidence            98764 889999999999999999987 5589999999999999998899888865   677889999999999999999


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~  782 (835)
                      ++|||+..++....|..|...+.++.|+|..-+++.|+ |++|++||+++.   ..+.........|.+.+|+|++..++
T Consensus       178 vki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletf---e~I~s~~~~~~~v~~~~fn~~~~~~~  254 (825)
T KOG0267|consen  178 VKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETF---EVISSGKPETDGVRSLAFNPDGKIVL  254 (825)
T ss_pred             eeeecccccccccccccccccccccccCchhhhhccCCCCceeeeecccee---EEeeccCCccCCceeeeecCCceeee
Confidence            99999999999999999999999999999999999999 999999999876   67777777788999999999999877


Q ss_pred             EEEcCC
Q 003271          783 VIGCYE  788 (835)
Q Consensus       783 sgs~dg  788 (835)
                      +|....
T Consensus       255 ~G~q~s  260 (825)
T KOG0267|consen  255 SGEQIS  260 (825)
T ss_pred             cCchhh
Confidence            776553

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=99.88  E-value=8.6e-20  Score=196.44  Aligned_cols=291  Identities=13%  Similarity=0.164  Sum_probs=222.4

Q ss_pred             CcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEE---eccC-CCCeEEEEE
Q 003271          530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST---LEEH-TQWITDVRF  605 (835)
Q Consensus       530 ~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~---l~~h-~~~V~sv~f  605 (835)
                      .+.+..+|+|.++....+++   .....|..+.|+|.+.-|++....+.+.+|+.+.+.+.++   ++.+ ...|.|++|
T Consensus       178 ~~h~lSVWdWqk~~~~~~vk---~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F  254 (626)
T KOG2106|consen  178 NPHMLSVWDWQKKAKLGPVK---TSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTF  254 (626)
T ss_pred             CccccchhhchhhhccCcce---eccceEEEEEeccCCCcEEEEeCCceEEEEEccCCceEEEeeccccccceEEEEEEE
Confidence            34455566666665555554   4566799999999766555555578999999998776644   3333 367999999


Q ss_pred             CCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----------
Q 003271          606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----------  675 (835)
Q Consensus       606 spdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----------  675 (835)
                      .++|. ++||..+|.|.||+..+.+.....+ .|.+.|.+++...+|.  |++|+.|..|..||-.-.+.          
T Consensus       255 ~engd-viTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~Gt--llSGgKDRki~~Wd~~y~k~r~~elPe~~G  330 (626)
T KOG2106|consen  255 LENGD-VITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGT--LLSGGKDRKIILWDDNYRKLRETELPEQFG  330 (626)
T ss_pred             cCCCC-EEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCcc--EeecCccceEEeccccccccccccCchhcC
Confidence            99875 7899999999999998766544444 9999999999998875  44699999999999321110          


Q ss_pred             -eeE---------------------ee-----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC
Q 003271          676 -AGV---------------------FK-----------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK  722 (835)
Q Consensus       676 -~~~---------------------~~-----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~  722 (835)
                       ++.                     +.           .....++.+|+.+.+++++.|+.+++|+  ..+.+.... ..
T Consensus       331 ~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~  407 (626)
T KOG2106|consen  331 PIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IE  407 (626)
T ss_pred             CeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ec
Confidence             000                     00           1244577888899999999999999999  344444333 45


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      .++.|+.|+|.| .|+.|. .|...|.|.++.   ..+..... ..+++++.|+|+|.+|++|+.|+.|+||.+..+...
T Consensus       408 d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~---~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~  482 (626)
T KOG2106|consen  408 DPAECADFHPSG-VVAVGTATGRWFVLDTETQ---DLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRK  482 (626)
T ss_pred             CceeEeeccCcc-eEEEeeccceEEEEecccc---eeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcE
Confidence            788999999999 888888 999999999885   44444444 889999999999999999999999999998765432


Q ss_pred             --Ee-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          802 --TL-SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       802 --~l-~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        +. ..|..+|+.+.|++|+++|.+-+.|-.|..|+
T Consensus       483 y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  483 YSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence              22 23448999999999999999999999999984

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2.1e-20  Score=191.46  Aligned_cols=268  Identities=16%  Similarity=0.251  Sum_probs=207.9

Q ss_pred             ccCCCCCceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCC
Q 003271          475 QHNGASSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (835)
Q Consensus       475 ~~~~s~~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH  554 (835)
                      ..++....+.+.|++.+               ..|..++.|+.+++|.....                    +.+..-.|
T Consensus         9 ~npP~d~IS~v~f~~~~---------------~~LLvssWDgslrlYdv~~~--------------------~l~~~~~~   53 (323)
T KOG1036|consen    9 ENPPEDGISSVKFSPSS---------------SDLLVSSWDGSLRLYDVPAN--------------------SLKLKFKH   53 (323)
T ss_pred             CCCChhceeeEEEcCcC---------------CcEEEEeccCcEEEEeccch--------------------hhhhheec
Confidence            33344455666666433               56677889999999933222                    22333468


Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      ..+|.+|+|.++ ..+++|+.||.|+++|+.++... .+..|...|.||.+++....+++|++|++|++||..... ...
T Consensus        54 ~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~~~~-~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~-~~~  130 (323)
T KOG1036|consen   54 GAPLLDCAFADE-STIVTGGLDGQVRRYDLNTGNED-QIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKV-VVG  130 (323)
T ss_pred             CCceeeeeccCC-ceEEEeccCceEEEEEecCCcce-eeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccc-ccc
Confidence            899999999974 57889999999999999987655 455799999999999988899999999999999998633 233


Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-----EeecCceEEEEecCCCEEEEEEcCCcEEEEEC
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-----VFKSGATQMRFQPRLGRILAAAIENYISILDV  709 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~-----~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl  709 (835)
                      .+. ....|.|+....+   .|+.|..|..|.+||+++.....     .++-.+.++++.|++.-+++++.||.|.+=.+
T Consensus       131 ~~d-~~kkVy~~~v~g~---~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~  206 (323)
T KOG1036|consen  131 TFD-QGKKVYCMDVSGN---RLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYF  206 (323)
T ss_pred             ccc-cCceEEEEeccCC---EEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEcc
Confidence            333 3348999887733   56677789999999999865443     34455899999999899999999999998777


Q ss_pred             CCC----eEEEEEcCCC---------CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271          710 ETQ----VCRLKLQGHK---------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  775 (835)
Q Consensus       710 ~t~----~~i~~l~~h~---------~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs  775 (835)
                      +..    .....|+.|.         .+|.+++|+|-...|++|+ ||.|.+||+.+.   +.+..+......|.+++|+
T Consensus       207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~r---Krl~q~~~~~~SI~slsfs  283 (323)
T KOG1036|consen  207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNR---KRLKQLAKYETSISSLSFS  283 (323)
T ss_pred             CCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcch---hhhhhccCCCCceEEEEec
Confidence            655    3444555553         3789999999988899988 999999999887   5666666667789999999


Q ss_pred             CCCCEEEEEEcC
Q 003271          776 PTFPSLLVIGCY  787 (835)
Q Consensus       776 pdg~~L~sgs~d  787 (835)
                      .+|..|+++++.
T Consensus       284 ~dG~~LAia~sy  295 (323)
T KOG1036|consen  284 MDGSLLAIASSY  295 (323)
T ss_pred             cCCCeEEEEech
Confidence            999999998863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.5e-20  Score=214.94  Aligned_cols=236  Identities=17%  Similarity=0.255  Sum_probs=202.1

Q ss_pred             ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 003271          594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (835)
Q Consensus       594 ~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~  673 (835)
                      ..|+...+.|+|.|+|.+|++++.||.|++|+.......-.++..+...|.+++....   .|++|+.+++|.+|.+.++
T Consensus        10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~---~f~~~s~~~tv~~y~fps~   86 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSN---HFLTGSEQNTVLRYKFPSG   86 (933)
T ss_pred             hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeeccc---ceEEeeccceEEEeeCCCC
Confidence            3688889999999999999999999999999987652223334447788888887643   6779999999999999876


Q ss_pred             e---eeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003271          674 S---CAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS  749 (835)
Q Consensus       674 ~---~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwD  749 (835)
                      +   .+..|..++.+++|+.+|.++++|+.|-.|++.++.+......+.+|..+|.+|.|+|.+.+|++.+ ||.|+|||
T Consensus        87 ~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~  166 (933)
T KOG1274|consen   87 EEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWD  166 (933)
T ss_pred             CccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEE
Confidence            5   5677888999999999999999999999999999999999999999999999999999999999999 99999999


Q ss_pred             cCCCCCcceEEEeec-------C-CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE---EeccCCCCeeEEEEeCC
Q 003271          750 IGSGSKGECIHELSC-------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLSAHDKLVSSLAASTV  818 (835)
Q Consensus       750 l~t~~~~~~i~~l~~-------~-~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l~~h~~~V~~la~spd  818 (835)
                      +.++.   +.+++..       . ...+..++|+|++..+++.+.|+.|++|+..++...   ....|...+.++.|+|+
T Consensus       167 ~~~~~---~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPn  243 (933)
T KOG1274|consen  167 LQDGI---LSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPN  243 (933)
T ss_pred             cccch---hhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCC
Confidence            99873   3333221       1 345677899999999999999999999999998865   33345556999999999


Q ss_pred             CCEEEEEECCCcEEEeC
Q 003271          819 NGMVASASHDKCVKIWK  835 (835)
Q Consensus       819 g~~LaSgs~DG~V~IWd  835 (835)
                      |+|||+++.||.|.|||
T Consensus       244 G~YiAAs~~~g~I~vWn  260 (933)
T KOG1274|consen  244 GKYIAASTLDGQILVWN  260 (933)
T ss_pred             CcEEeeeccCCcEEEEe
Confidence            99999999999999997

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=5.7e-21  Score=194.92  Aligned_cols=256  Identities=20%  Similarity=0.311  Sum_probs=212.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEE
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~f  648 (835)
                      .|++.-.+++++      ..+++.+.+|.+.|+.++......++.+++.|.+.+||.++++.+ +..+.+|.+.|++|.|
T Consensus       126 rivssFk~~t~~------~~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~C-L~~Y~GH~GSVNsikf  198 (481)
T KOG0300|consen  126 RIVSSFKDGTVK------FRLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGAC-LATYTGHTGSVNSIKF  198 (481)
T ss_pred             hheeeecCCcee------EeehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccc-eeeecccccceeeEEe
Confidence            345555555532      245677889999999999988778999999999999999999874 8999999999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEE------CCCC--------e--------------------------eeeEeec---CceE
Q 003271          649 HPSKEDLLCSCDNNSEIRYWS------INNG--------S--------------------------CAGVFKS---GATQ  685 (835)
Q Consensus       649 sp~g~~ll~sgs~Dg~I~iwD------l~s~--------~--------------------------~~~~~~~---~i~~  685 (835)
                      ++.+. ++++++.|++..||.      +...        +                          .+..+.+   .+.+
T Consensus       199 h~s~~-L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  199 HNSGL-LLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             ccccc-eEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            99865 788999999999997      2110        0                          0011111   1444


Q ss_pred             EEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271          686 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC  764 (835)
Q Consensus       686 l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~  764 (835)
                      ..|-..+..+++++.|.+..+||+++++.+..+.+|...++.++-+|..+++++.+ |.+.++||++..  ...+..|.+
T Consensus       278 ~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRea--I~sV~VFQG  355 (481)
T KOG0300|consen  278 CDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREA--IQSVAVFQG  355 (481)
T ss_pred             hhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhh--cceeeeecc
Confidence            55777789999999999999999999999999999999999999999999999999 999999999843  467788999


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE-EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       765 ~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~-~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |...|+++.|..+.+ +++|+.|.+|+|||+++... +......++++.++++..+.+|+.--++..|++||
T Consensus       356 HtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqvRlfD  426 (481)
T KOG0300|consen  356 HTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQVRLFD  426 (481)
T ss_pred             cccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceEEEEe
Confidence            999999999998876 89999999999999988664 45556678899999998777888888888899987

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.3e-20  Score=201.86  Aligned_cols=256  Identities=13%  Similarity=0.183  Sum_probs=204.0

Q ss_pred             EeCC-CeEEEEEcCCCeEEEEeccCCC-CeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 003271          573 GGHD-KKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (835)
Q Consensus       573 gs~D-g~I~VWd~~t~~~i~~l~~h~~-~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs  649 (835)
                      ++.| ..+.+||+.+|.....+++... .-.++..- .+.+++++.. ...|.+|.+..... ...+..-.++|.++.-+
T Consensus        13 sS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~-~~q~~v~Pg~v~al~s~   90 (476)
T KOG0646|consen   13 SSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQ-VVQYIVLPGPVHALASS   90 (476)
T ss_pred             cCCCCcceeEEecCCCceeEEecCcccccchhhhhh-chhheeeecccCccccccccCchhh-hhhhcccccceeeeecC
Confidence            3344 4599999999999888876522 11112111 2356666644 45899999986554 23344466889999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECC---------CCeEEEE
Q 003271          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVE---------TQVCRLK  717 (835)
Q Consensus       650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~---------t~~~i~~  717 (835)
                      |.|. +++.|+..|.|++|.+.+|..+..+..+   ++++.|+-++.+|++++.||.|.+|++-         +-++++.
T Consensus        91 n~G~-~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~  169 (476)
T KOG0646|consen   91 NLGY-FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHI  169 (476)
T ss_pred             CCce-EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceee
Confidence            9976 5557778999999999999998887654   9999999999999999999999999764         3467888


Q ss_pred             EcCCCCCeEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          718 LQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       718 l~~h~~~I~sl~fspd--g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      |..|.-+|+.+...+.  ..+|++++ |.++++||+..+   ..+.++. ....+.+|+.+|-++.+++|+.+|.|.+.+
T Consensus       170 f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g---~LLlti~-fp~si~av~lDpae~~~yiGt~~G~I~~~~  245 (476)
T KOG0646|consen  170 FSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLG---VLLLTIT-FPSSIKAVALDPAERVVYIGTEEGKIFQNL  245 (476)
T ss_pred             eccCcceeEEEEecCCCccceEEEecCCceEEEEEeccc---eeeEEEe-cCCcceeEEEcccccEEEecCCcceEEeee
Confidence            9999999999988665  46788888 999999999988   5555554 467899999999999999999999999988


Q ss_pred             cCCCc-----------------EEEeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          795 MTENK-----------------TLTLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       795 l~~~~-----------------~~~l~~h~~--~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +....                 ...+.+|.+  .|+|++++.||.+|++|+.||.|+|||
T Consensus       246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWd  305 (476)
T KOG0646|consen  246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWD  305 (476)
T ss_pred             hhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEe
Confidence            75432                 125678888  999999999999999999999999997

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.87  E-value=1.2e-19  Score=201.80  Aligned_cols=277  Identities=18%  Similarity=0.234  Sum_probs=227.4

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-eEEEEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-TVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-~~i~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      .+.+.-...+|.|++|+.+.+.||.+-.||.|.||++... -+...+.++. ..|.+++|+ ++..|++.+.+|.|.-||
T Consensus        18 crf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwD   96 (691)
T KOG2048|consen   18 CRFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWD   96 (691)
T ss_pred             EEEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEe
Confidence            3444455678999999999999999999999999999764 3445566554 579999999 556788889999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-----ecCceEEEEecCCCEEEEEEc
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KSGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-----~~~i~~l~fsp~~~~ll~~s~  700 (835)
                      +.+.+. +..+....+.|++++.+|.+. .++.|++||.++++++..++.....     ++.+.++.|++++..++.|+.
T Consensus        97 l~~lk~-~~~~d~~gg~IWsiai~p~~~-~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~  174 (691)
T KOG2048|consen   97 LHTLKQ-KYNIDSNGGAIWSIAINPENT-ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI  174 (691)
T ss_pred             cccCce-eEEecCCCcceeEEEeCCccc-eEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence            998764 666777788999999999975 6667778998889998887765433     366899999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEc--------CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271          701 ENYISILDVETQVCRLKLQ--------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS  771 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~--------~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s  771 (835)
                      ||.|++||+.++..++...        ....-|.+|.|-.++. |++|. .|+|.+||...+   ..+..+..|...|.+
T Consensus       175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~t-I~sgDS~G~V~FWd~~~g---TLiqS~~~h~adVl~  250 (691)
T KOG2048|consen  175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDST-IASGDSAGTVTFWDSIFG---TLIQSHSCHDADVLA  250 (691)
T ss_pred             CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecCc-EEEecCCceEEEEcccCc---chhhhhhhhhcceeE
Confidence            9999999999987776221        1233577788876665 45555 999999999888   788889999999999


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEEcCCCcE--E---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          772 CVFHPTFPSLLVIGCYETLELWNMTENKT--L---TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       772 v~fspdg~~L~sgs~dg~I~IwDl~~~~~--~---~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      ++..+++.++++++.|+.|.-|...+++.  +   ....|...|.+++..++  .|++|+.|..+.|
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i  315 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAI  315 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEE
Confidence            99999999999999999999888877643  2   44578899999999876  8999999998865

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.87  E-value=1.3e-20  Score=207.86  Aligned_cols=280  Identities=15%  Similarity=0.218  Sum_probs=207.7

Q ss_pred             cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (835)
Q Consensus       503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW  582 (835)
                      ...+.+++.+..|+.|.+|....-..      +       ..-..++....|.+.|..+.|.|....|++++.|.++++|
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~f------r-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~W  127 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVF------R-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW  127 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhc------c-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeee
Confidence            55678999999999999993322210      0       1111245566899999999999966789999999999999


Q ss_pred             EcCCCeEEEE--eccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCc--------------------------ee
Q 003271          583 CTESFTVKST--LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--------------------------SL  633 (835)
Q Consensus       583 d~~t~~~i~~--l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~--------------------------~~  633 (835)
                      |+++.+++..  +.+|.+.|.+++|.+. ...|++|+.||.|.|||+.....                          .+
T Consensus       128 dvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~  207 (720)
T KOG0321|consen  128 DVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRI  207 (720)
T ss_pred             eeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccc
Confidence            9999988866  8899999999999995 56899999999999999863320                          01


Q ss_pred             EEeecCCCCeEE---EEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEe--------------ecCceEEEEecCCCEE
Q 003271          634 RTFTGHSTTVMS---LDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVF--------------KSGATQMRFQPRLGRI  695 (835)
Q Consensus       634 ~~~~~h~~~V~s---l~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~~--------------~~~i~~l~fsp~~~~l  695 (835)
                      +....+...|.+   +.+..|.. .|++++. |+.|+|||+++..+....              ..++.++..+..|.++
T Consensus       208 ~k~kA~s~ti~ssvTvv~fkDe~-tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L  286 (720)
T KOG0321|consen  208 RKWKAASNTIFSSVTVVLFKDES-TLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYL  286 (720)
T ss_pred             cccccccCceeeeeEEEEEeccc-eeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeE
Confidence            122234444444   44445544 4556655 999999999876544321              1346778888889999


Q ss_pred             EEEEcCCcEEEEECCCC--eEEEEEcCCCCCe--EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271          696 LAAAIENYISILDVETQ--VCRLKLQGHKNQV--HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  770 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I--~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~  770 (835)
                      ++.+.|+.|++|++.+.  .++..+.++...-  ..-+.+|++.+|++|+ |...++|.+.+..  .....+.+|.-.|+
T Consensus       287 ~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e--~~~~~l~Ght~eVt  364 (720)
T KOG0321|consen  287 FASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPE--APPALLLGHTREVT  364 (720)
T ss_pred             EEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCcc--CChhhhhCcceEEE
Confidence            99999999999999864  3444454433221  1234689999999999 9999999998864  45556778999999


Q ss_pred             EEEEeCCC-CEEEEEEcCCeEEEEEcCCC
Q 003271          771 SCVFHPTF-PSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       771 sv~fspdg-~~L~sgs~dg~I~IwDl~~~  798 (835)
                      +++|.|.. .-+++++.|..++||++..+
T Consensus       365 ~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  365 TVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             EEeeccccCCCceeeccCcceEEEeccCc
Confidence            99998754 23777788999999999654

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=99.85  E-value=1.4e-19  Score=201.43  Aligned_cols=312  Identities=18%  Similarity=0.270  Sum_probs=237.2

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC---EEEEEeCCCeEEEE
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK---LLATGGHDKKAVLW  582 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~---~Lasgs~Dg~I~VW  582 (835)
                      .-++++|+.+..+.++-..                 ...|..+..+.||.+-|.+++|..-+.   +||+++.|..|+||
T Consensus       159 ~~lla~Ggs~~~v~~~s~~-----------------~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW  221 (764)
T KOG1063|consen  159 TFLLACGGSKFVVDLYSSS-----------------ADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIW  221 (764)
T ss_pred             cEEEEecCcceEEEEeccC-----------------CcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEE
Confidence            3477888888888887221                 125778889999999999999987544   79999999999999


Q ss_pred             EcCCCe---------------------EE----------EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271          583 CTESFT---------------------VK----------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (835)
Q Consensus       583 d~~t~~---------------------~i----------~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~  631 (835)
                      .+.-+.                     ..          ..+.+|.+.|+++.|+|.+..|++++.|.++.||..++...
T Consensus       222 ~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tG  301 (764)
T KOG1063|consen  222 RIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTG  301 (764)
T ss_pred             EEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccc
Confidence            753211                     11          11248999999999999999999999999999998876532


Q ss_pred             e------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-ee--eEee---cCceEEEEecCCCEEEEEE
Q 003271          632 S------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA--GVFK---SGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       632 ~------~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~--~~~~---~~i~~l~fsp~~~~ll~~s  699 (835)
                      .      +-...+........-|+|+++ ++++-+..|..++|...... ..  ..+.   .++..+.|+|.|.++++++
T Consensus       302 iWv~~vRlGe~gg~a~GF~g~lw~~n~~-~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs  380 (764)
T KOG1063|consen  302 IWVDVVRLGEVGGSAGGFWGGLWSPNSN-VIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVS  380 (764)
T ss_pred             eEEEEEEeecccccccceeeEEEcCCCC-EEEEecccCcEEEEeccCccceeeccccccccccceeeeecCCCCEEEEec
Confidence            1      122233445678889999976 56677789999999943321 11  1222   4589999999999999999


Q ss_pred             cCCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC----------------------
Q 003271          700 IENYISILDVET----QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS----------------------  752 (835)
Q Consensus       700 ~dg~I~IwDl~t----~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t----------------------  752 (835)
                      .|-+-++|-.-.    ...+..-.-|...++|++|-+....+++|. +..+|+|+...                      
T Consensus       381 ~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~  460 (764)
T KOG1063|consen  381 LDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPD  460 (764)
T ss_pred             cccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhccc
Confidence            999999986541    223333345889999999988655666666 67889997531                      


Q ss_pred             ---------------------CCC------------------------------cceEEEeecCCCceEEEEEeCCCCEE
Q 003271          753 ---------------------GSK------------------------------GECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       753 ---------------------~~~------------------------------~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                                           +..                              ...++.+.+|+..|++++.+|+++.+
T Consensus       461 gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnli  540 (764)
T KOG1063|consen  461 GANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLI  540 (764)
T ss_pred             ccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEE
Confidence                                 000                              00011345788999999999999999


Q ss_pred             EEEEcCC-----eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          782 LVIGCYE-----TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       782 ~sgs~dg-----~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++++...     .|++|+..+.... .+.+|.-.|+.|+||||+++|+++|.|.++.+|+
T Consensus       541 ASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~  600 (764)
T KOG1063|consen  541 ASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYE  600 (764)
T ss_pred             eehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeee
Confidence            9988754     7999999888776 6999999999999999999999999999999995

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=5.4e-20  Score=189.42  Aligned_cols=283  Identities=19%  Similarity=0.341  Sum_probs=218.3

Q ss_pred             EEecCCCCCEEEEEEeC----C-CCEEEEEeCCCeEEEEEcCCCe---EEEEe--ccCCCCeEEEEECCC----CCEEEE
Q 003271          549 QLIPASTSKVESCHFSP----D-GKLLATGGHDKKAVLWCTESFT---VKSTL--EEHTQWITDVRFSPS----LSRLAT  614 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSp----d-g~~Lasgs~Dg~I~VWd~~t~~---~i~~l--~~h~~~V~sv~fspd----g~~Lat  614 (835)
                      +....|+.+|..++|++    + -..+|+++ ...|.+|.....-   .+..+  ..|......++|+-+    ..+||+
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~  110 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAA  110 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEe
Confidence            34567899999999985    2 23466655 4678899875432   23333  247778888999764    347899


Q ss_pred             EECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee------cCceEEEE
Q 003271          615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------SGATQMRF  688 (835)
Q Consensus       615 gs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~------~~i~~l~f  688 (835)
                      |+.-|.|+|.|+.++.. ...+.+|...|..|.|+|+...++++++.|..|++|++.+..|+..+.      ..+.++.|
T Consensus       111 ~G~~GvIrVid~~~~~~-~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~  189 (385)
T KOG1034|consen  111 GGYLGVIRVIDVVSGQC-SKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDF  189 (385)
T ss_pred             ecceeEEEEEecchhhh-ccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEE
Confidence            99999999999998764 788999999999999999999999999999999999999999998885      34899999


Q ss_pred             ecCCCEEEEEEcCCcEEEEECCCCeEEE----------------------------EEcCCCCCeEEEEEcCCCCEEEEE
Q 003271          689 QPRLGRILAAAIENYISILDVETQVCRL----------------------------KLQGHKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       689 sp~~~~ll~~s~dg~I~IwDl~t~~~i~----------------------------~l~~h~~~I~sl~fspdg~~Lasg  740 (835)
                      ++++.+|++++.|..|.+|++...+...                            +-.-|...|.|+.|.  |+++++-
T Consensus       190 ~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSk  267 (385)
T KOG1034|consen  190 SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSK  267 (385)
T ss_pred             cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeec
Confidence            9999999999999999999998321100                            111255666666665  5788887


Q ss_pred             e-CCeEEEEEcCC-C----------CCcceEEEeecCCCceEEE--EEeCCCCEEEEEEcCCeEEEEEcCCCcEE---Ee
Q 003271          741 S-DELVRVWSIGS-G----------SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYETLELWNMTENKTL---TL  803 (835)
Q Consensus       741 s-Dg~I~IwDl~t-~----------~~~~~i~~l~~~~~~V~sv--~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l  803 (835)
                      + ++.|..|.... .          .....+.++......|+.+  +|.|-.+.|+.|...|.|++||++..+..   ++
T Consensus       268 scenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl  347 (385)
T KOG1034|consen  268 SCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTL  347 (385)
T ss_pred             ccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceE
Confidence            7 99999998721 1          1122344455555556555  55677899999999999999999887653   22


Q ss_pred             --ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          804 --SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       804 --~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        ......|...+|+.|+.+|+..++|++|.-||
T Consensus       348 ~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd  381 (385)
T KOG1034|consen  348 THSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD  381 (385)
T ss_pred             EeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence              23356799999999999999999999999997

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=1.6e-18  Score=192.91  Aligned_cols=276  Identities=14%  Similarity=0.183  Sum_probs=221.3

Q ss_pred             CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecC-CCCCEEEEEEeCCCCEEEEEeCCC
Q 003271          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPA-STSKVESCHFSPDGKLLATGGHDK  577 (835)
Q Consensus       499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~g-H~~~V~sl~fSpdg~~Lasgs~Dg  577 (835)
                      +.++...++.+|.+..|++|++|.....                  +-...++.+ ....|.+++|++ +..|++.+.+|
T Consensus        30 slA~s~kS~~lAvsRt~g~IEiwN~~~~------------------w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg   90 (691)
T KOG2048|consen   30 SLAYSHKSNQLAVSRTDGNIEIWNLSNN------------------WFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSG   90 (691)
T ss_pred             EEEEeccCCceeeeccCCcEEEEccCCC------------------ceeeEEEecCCCCceeeEEEcc-CCeEEeecCCc
Confidence            3344455577999999999999944332                  122333444 457899999995 45778888899


Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEE
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLL  656 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll  656 (835)
                      .|.-||+.+++.+..+....+.|++++.+|.+..++.|++||.+..+++..+.... +.+...++.|.+++|+|++. -+
T Consensus        91 ~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~-~i  169 (691)
T KOG2048|consen   91 SITEWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGT-KI  169 (691)
T ss_pred             eEEEEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCcc-EE
Confidence            99999999999999999999999999999999999999999988888887765433 34455668999999999976 45


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEee-------cC----ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCe
Q 003271          657 CSCDNNSEIRYWSINNGSCAGVFK-------SG----ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQV  725 (835)
Q Consensus       657 ~sgs~Dg~I~iwDl~s~~~~~~~~-------~~----i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I  725 (835)
                      ++|+.||.|++||..++..+..+.       ..    +.++.|- ..+.|++|...|.|.+||...+..+..+..|...|
T Consensus       170 ~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adV  248 (691)
T KOG2048|consen  170 AGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADV  248 (691)
T ss_pred             EecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEecCCceEEEEcccCcchhhhhhhhhcce
Confidence            699999999999999988776332       11    4445555 45789999999999999999999999999999999


Q ss_pred             EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          726 HSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       726 ~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      .|++..+++.++++++ |+.|.-|...+... .........|...|.+++..++  .|++|+.|..+.+-....
T Consensus       249 l~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~  320 (691)
T KOG2048|consen  249 LALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSRE  320 (691)
T ss_pred             eEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--eEEecceeeEEEEccccc
Confidence            9999999999888888 99988888877643 2233345678889999999888  799999999888876554

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.84  E-value=2.1e-19  Score=192.10  Aligned_cols=292  Identities=18%  Similarity=0.264  Sum_probs=213.3

Q ss_pred             CceeEEEEEecCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEEcCC----CeEEEEeccCCCCeEEEEECCC-CCEEEE
Q 003271          542 GFTFTEFQLIPASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLAT  614 (835)
Q Consensus       542 g~~~~~i~~l~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t----~~~i~~l~~h~~~V~sv~fspd-g~~Lat  614 (835)
                      ...+.+...++-|.+.|+|++|+|..  +++|+|..-|.|-+||+.+    ...+..+..|..+|.++.|+|. ...+++
T Consensus       173 l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~s  252 (498)
T KOG4328|consen  173 LDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYS  252 (498)
T ss_pred             cccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheee
Confidence            44556677788899999999999954  4789999999999999952    2345667789999999999994 568999


Q ss_pred             EECCCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEeecCceEEEEe
Q 003271          615 SSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFKSGATQMRFQ  689 (835)
Q Consensus       615 gs~Dg~I~IWDl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----~~~~~~~i~~l~fs  689 (835)
                      .|+||+|++-|++..... +.........+.++.|+.+...++ .++.=|...+||++++..    +...+-.|..++++
T Consensus       253 sSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl-~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N  331 (498)
T KOG4328|consen  253 SSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVL-FGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALN  331 (498)
T ss_pred             eccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEE-EeecccceEEEEeecCCccchhhhhhhcccceeecC
Confidence            999999999999875421 122222445567788887766555 565566999999987654    23334569999999


Q ss_pred             cCCC-EEEEEEcCCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-CCcceEEEe
Q 003271          690 PRLG-RILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-SKGECIHEL  762 (835)
Q Consensus       690 p~~~-~ll~~s~dg~I~IwDl~t~~----~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~-~~~~~i~~l  762 (835)
                      |-.. ++++++.|++++|||++.-.    ++.....|...|.+++|||.+-.|++.+ |+.|+|||..-- .......++
T Consensus       332 P~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I  411 (498)
T KOG4328|consen  332 PVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTI  411 (498)
T ss_pred             CCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCcccee
Confidence            9875 46678889999999998532    2344556999999999999876677776 999999998411 011122222


Q ss_pred             e---cCCC--ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC-CCeeE-EEEeCCCC-EEEEEECCCcEEE
Q 003271          763 S---CTGN--KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KLVSS-LAASTVNG-MVASASHDKCVKI  833 (835)
Q Consensus       763 ~---~~~~--~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~~V~~-la~spdg~-~LaSgs~DG~V~I  833 (835)
                      .   .+..  ......|.|+..+|+++-.-..|-|||-+.++.+ .+.... ..|.+ ..|+|-+. +++.++..|.|+|
T Consensus       412 ~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~v  491 (498)
T KOG4328|consen  412 PHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYV  491 (498)
T ss_pred             eccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEE
Confidence            1   1111  2345689999999999999999999999888855 433332 24544 47999887 4455556788988


Q ss_pred             e
Q 003271          834 W  834 (835)
Q Consensus       834 W  834 (835)
                      |
T Consensus       492 f  492 (498)
T KOG4328|consen  492 F  492 (498)
T ss_pred             E
Confidence            8

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=1.2e-20  Score=212.02  Aligned_cols=232  Identities=18%  Similarity=0.366  Sum_probs=190.8

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEE
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWC  583 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd  583 (835)
                      .+++|++.+..+.|.+|.....                ..-..+..+..|+..|.+++|++.. .+|++|+.||+|++||
T Consensus        99 ~~NlIAT~s~nG~i~vWdlnk~----------------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~D  162 (839)
T KOG0269|consen   99 YSNLIATCSTNGVISVWDLNKS----------------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWD  162 (839)
T ss_pred             hhhhheeecCCCcEEEEecCcc----------------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEe
Confidence            3578999999999999943221                1112355678999999999999854 5799999999999999


Q ss_pred             cCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271          584 TESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       584 ~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      +...+-..++.+..+.|.+|+|+|. +.+|+++.+.|.+.+||++....+...+..|.++|.|+.|+|+ ..+|++|+.|
T Consensus       163 lR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPn-r~~lATGGRD  241 (839)
T KOG0269|consen  163 LRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPN-REWLATGGRD  241 (839)
T ss_pred             eecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCC-CceeeecCCC
Confidence            9999888888889999999999994 7889999999999999999988888999999999999999996 5589999999


Q ss_pred             CcEEEEECCCCeee--eEee--cCceEEEEecCCCEEEEEE---cCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcC-C
Q 003271          663 SEIRYWSINNGSCA--GVFK--SGATQMRFQPRLGRILAAA---IENYISILDVETQ-VCRLKLQGHKNQVHSVCWNT-S  733 (835)
Q Consensus       663 g~I~iwDl~s~~~~--~~~~--~~i~~l~fsp~~~~ll~~s---~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fsp-d  733 (835)
                      +.|+|||+.+.+..  .++.  .++.++.|-|...+.++.+   .|-.|+|||++.. -+...+..|...++.++|.. |
T Consensus       242 K~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d  321 (839)
T KOG0269|consen  242 KMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGD  321 (839)
T ss_pred             ccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCC
Confidence            99999999865432  3333  5689999999987765544   3678999999876 55667888999999999965 4


Q ss_pred             CCEEEEEe-CCeEEEEEcCCC
Q 003271          734 GEYLASVS-DELVRVWSIGSG  753 (835)
Q Consensus       734 g~~Lasgs-Dg~I~IwDl~t~  753 (835)
                      -..+.+++ |++|..-.+++.
T Consensus       322 ~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  322 RINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceeeEeecCccHHHHhhhhcc
Confidence            55677777 888776666554

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.84  E-value=3.5e-19  Score=188.05  Aligned_cols=295  Identities=19%  Similarity=0.276  Sum_probs=211.0

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--  585 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--  585 (835)
                      ++++|+.|..|++|....+..+.          .+....-...+..|...|++|.|+|+|.+||+|+.+|.|.+|-..  
T Consensus        28 ~laT~G~D~~iriW~v~r~~~~~----------~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~   97 (434)
T KOG1009|consen   28 KLATAGGDKDIRIWKVNRSEPGG----------GDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDV   97 (434)
T ss_pred             ceecccCccceeeeeeeecCCCC----------CceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCc
Confidence            89999999999999444443221          124566677889999999999999999999999999999999654  


Q ss_pred             ------C--------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC
Q 003271          586 ------S--------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (835)
Q Consensus       586 ------t--------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~  651 (835)
                            +        +...+.+.+|...|..++|+|++.++++++-|..+++||+..+.. ...+.+|...|..++|.|-
T Consensus        98 ~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l-~~~~~dh~~yvqgvawDpl  176 (434)
T KOG1009|consen   98 RIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQL-LAILDDHEHYVQGVAWDPL  176 (434)
T ss_pred             CCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEecccee-Eeeccccccccceeecchh
Confidence                  2        445677889999999999999999999999999999999998874 7888999999999999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003271          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW  730 (835)
Q Consensus       652 g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f  730 (835)
                      +. ++++-+.|...+.+++.....+..+... ....++....        ....++|.-++.         ..-...++|
T Consensus       177 ~q-yv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e--------~~s~rLfhDeTl---------ksFFrRlsf  238 (434)
T KOG1009|consen  177 NQ-YVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE--------GKSTRLFHDETL---------KSFFRRLSF  238 (434)
T ss_pred             hh-hhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC--------cceeeeeecCch---------hhhhhhccc
Confidence            66 5557777887777777655444333210 0001111110        112222222221         123456788


Q ss_pred             cCCCCEEEEEe-----CC-----eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC-----------------CCEEEE
Q 003271          731 NTSGEYLASVS-----DE-----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----------------FPSLLV  783 (835)
Q Consensus       731 spdg~~Lasgs-----Dg-----~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd-----------------g~~L~s  783 (835)
                      +|+|.+|++.+     ++     ..++|+-...  ...+..+.+....+..+.|+|-                 .+.+++
T Consensus       239 TPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l--~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa  316 (434)
T KOG1009|consen  239 TPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL--KRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA  316 (434)
T ss_pred             CCCCcEEEcccceeeeCCceeeceeEeeccccc--cCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEE
Confidence            89998888653     23     3355554322  2344455555555555555441                 234566


Q ss_pred             EEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          784 IGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       784 gs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      ....+.|+|||..+-+.+  .-.-|-..|++++|++||..|+..+.||.+-+
T Consensus       317 iAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~  368 (434)
T KOG1009|consen  317 IATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSL  368 (434)
T ss_pred             EeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEE
Confidence            666779999999998776  34468899999999999999999999997543

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=2.7e-17  Score=181.31  Aligned_cols=312  Identities=27%  Similarity=0.437  Sum_probs=237.2

Q ss_pred             cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-CCEEEEEE-eCCCC-EEEEEeC-C
Q 003271          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHF-SPDGK-LLATGGH-D  576 (835)
Q Consensus       501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sl~f-Spdg~-~Lasgs~-D  576 (835)
                      .+......+..++.|+.+.+|......                  ..+..+.++. ..+..+.+ ++++. +++..+. |
T Consensus        72 ~~~~~~~~~~~~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  133 (466)
T COG2319          72 AFSPDGELLLSGSSDGTIKLWDLDNGE------------------KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLD  133 (466)
T ss_pred             EECCCCcEEEEecCCCcEEEEEcCCCc------------------eeEEEEeccCCCceeeEEEECCCcceEEeccCCCC
Confidence            344555777888889999999443331                  2334444433 36777777 78887 5555444 9


Q ss_pred             CeEEEEEcCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271          577 KKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       577 g~I~VWd~~t-~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~  654 (835)
                      +.+.+|+... ......+..|...|.+++|+|++.++++++. |+.+++|++.... .+..+.+|...|.+++|+|++..
T Consensus       134 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~  212 (466)
T COG2319         134 GTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK-PLSTLAGHTDPVSSLAFSPDGGL  212 (466)
T ss_pred             ccEEEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc-eEEeeccCCCceEEEEEcCCcce
Confidence            9999999998 8888899999999999999999998888885 9999999999744 47778889999999999998875


Q ss_pred             EEEEEeCCCcEEEEECCCCeeee-EeecCceE-E-EEecCCCEEEEEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEE
Q 003271          655 LLCSCDNNSEIRYWSINNGSCAG-VFKSGATQ-M-RFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW  730 (835)
Q Consensus       655 ll~sgs~Dg~I~iwDl~s~~~~~-~~~~~i~~-l-~fsp~~~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~f  730 (835)
                      ++++++.|+.|++||...+.... .+..+... + .|++++..+++++.|+.+++||+..... +..+.+|...|.++.|
T Consensus       213 ~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  292 (466)
T COG2319         213 LIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF  292 (466)
T ss_pred             EEEEecCCCcEEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEE
Confidence            66666899999999998777776 45544332 2 7999988888899999999999997654 4444678899999999


Q ss_pred             cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--cCCCceEEEEEeCCCCEEEEE-EcCCeEEEEEcCCCcEEEeccC
Q 003271          731 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVI-GCYETLELWNMTENKTLTLSAH  806 (835)
Q Consensus       731 spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--~~~~~V~sv~fspdg~~L~sg-s~dg~I~IwDl~~~~~~~l~~h  806 (835)
                      .|++..+++++ |+.+.+||+.+.   .......  .|...+..+.|.+++..++.+ ..|+.+.+|++...........
T Consensus       293 ~~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~  369 (466)
T COG2319         293 SPDGKLLASGSSDGTVRLWDLETG---KLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG  369 (466)
T ss_pred             CCCCCEEEEeeCCCcEEEEEcCCC---ceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecC
Confidence            99888888877 888999988876   3333333  666678899884332556666 5778899999988873333233


Q ss_pred             CCCeeEEEEeCCCCEEEE-EECCCcEEEeC
Q 003271          807 DKLVSSLAASTVNGMVAS-ASHDKCVKIWK  835 (835)
Q Consensus       807 ~~~V~~la~spdg~~LaS-gs~DG~V~IWd  835 (835)
                      ...+..+.+.+ ...++. +..++.+.+|+
T Consensus       370 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  398 (466)
T COG2319         370 HSNVLSVSFSP-DGRVVSSGSTDGTVRLWD  398 (466)
T ss_pred             CceEEEEEECC-CCCEEEEecCCCceEEEe
Confidence            33388899988 544444 68899999996

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.84  E-value=2e-19  Score=198.08  Aligned_cols=269  Identities=18%  Similarity=0.276  Sum_probs=212.4

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      .|..++|-|||..|+.+. +..+.|||...|..+.++++|.+.|+||+|+.||+.+++|+.|..|.||+-.-..  +. .
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG--~L-k   89 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEG--IL-K   89 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccc--ee-e
Confidence            699999999999887775 4689999999999999999999999999999999999999999999999876433  22 2


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEE
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCR  715 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i  715 (835)
                      ..|.+.|.|+.|+|-.. .+++|+ =...-+|........ ......+.+.+|..+|.+++.|-.+|+|.|-+....+.+
T Consensus        90 YSH~D~IQCMsFNP~~h-~LasCs-LsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~  167 (1081)
T KOG1538|consen   90 YSHNDAIQCMSFNPITH-QLASCS-LSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV  167 (1081)
T ss_pred             eccCCeeeEeecCchHH-Hhhhcc-hhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence            35899999999999855 666776 345678887654332 223355788899999999999999999999865433332


Q ss_pred             EE--EcCCCCCeEEEEEcCCC-----CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          716 LK--LQGHKNQVHSVCWNTSG-----EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       716 ~~--l~~h~~~I~sl~fspdg-----~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      ..  -.+..++|.+++|+|..     ..+++.. ..++.+|.+..    ..+..-..-+-...++.+.++|.++++|+.|
T Consensus       168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG----~~Igk~r~L~FdP~CisYf~NGEy~LiGGsd  243 (1081)
T KOG1538|consen  168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG----KQIGKDRALNFDPCCISYFTNGEYILLGGSD  243 (1081)
T ss_pred             EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc----eeecccccCCCCchhheeccCCcEEEEccCC
Confidence            22  22477899999999863     4566666 66777777654    2333333344566789999999999999999


Q ss_pred             CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          788 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       788 g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.+.+|.-+.-.+-++......|+.++..|++.+++.|+.||+|-.|+
T Consensus       244 k~L~~fTR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyN  291 (1081)
T KOG1538|consen  244 KQLSLFTRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQDGTIACYN  291 (1081)
T ss_pred             CceEEEeecCeEEeeccccceeEEEEEEccCCceEEEEEccCeeehhh
Confidence            999999755444446667788999999999999999999999997664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.84  E-value=2.8e-19  Score=183.08  Aligned_cols=268  Identities=16%  Similarity=0.256  Sum_probs=203.2

Q ss_pred             CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (835)
Q Consensus       504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd  583 (835)
                      .-..+++.|+.|+.|.+|+                   -.++..-+.+.+|..+|+|++||+||+.|+|++.|..|.+||
T Consensus        33 ~~G~~lAvGc~nG~vvI~D-------------------~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwD   93 (405)
T KOG1273|consen   33 RWGDYLAVGCANGRVVIYD-------------------FDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWD   93 (405)
T ss_pred             cCcceeeeeccCCcEEEEE-------------------ccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEe
Confidence            3447999999999999992                   233445567889999999999999999999999999999999


Q ss_pred             cCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCCceeEEeec---CCCCeEEEEEcCCCCcEEEEE
Q 003271          584 TESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSC  659 (835)
Q Consensus       584 ~~t~~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~~~~~~~~~---h~~~V~sl~fsp~g~~ll~sg  659 (835)
                      +..+.+++.+. ...+|+.+.|+|... .+++.-.+..-.+-++..+...+.....   .+....+..|++.|+ ++++|
T Consensus        94 l~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~-yIitG  171 (405)
T KOG1273|consen   94 LLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGK-YIITG  171 (405)
T ss_pred             ccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCC-EEEEe
Confidence            99999998885 678999999999533 3333334444555666543321111110   111223345788877 56689


Q ss_pred             eCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCC-------eE--EEEEcC--CCCC
Q 003271          660 DNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQ-------VC--RLKLQG--HKNQ  724 (835)
Q Consensus       660 s~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-------~~--i~~l~~--h~~~  724 (835)
                      ...|.+.++|..+.+++..++    ..+..+.++..+..|++-+.|..|+.|+++.-       ++  .+++..  ....
T Consensus       172 tsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~  251 (405)
T KOG1273|consen  172 TSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQ  251 (405)
T ss_pred             cCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhh
Confidence            999999999999999998776    34788899999999999999999999998731       11  111111  1234


Q ss_pred             eEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          725 VHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       725 I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~-~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      -.+++|+.+|.|+++++  -..++||.-..|   ..++.+.+.. .....+.|+|-.+.|++. ..|.|+||...
T Consensus       252 Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~G---sLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~  322 (405)
T KOG1273|consen  252 WKKCCFSGDGEYVCAGSARAHALYIWEKSIG---SLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV  322 (405)
T ss_pred             hhheeecCCccEEEeccccceeEEEEecCCc---ceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence            56899999999999998  569999999888   6777777766 667889999999877777 77899999864

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=2.6e-19  Score=192.07  Aligned_cols=254  Identities=19%  Similarity=0.244  Sum_probs=199.8

Q ss_pred             EEEEEEeCCCCE-EEEEeCCCeEEEEEcCCC--eE--EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271          558 VESCHFSPDGKL-LATGGHDKKAVLWCTESF--TV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (835)
Q Consensus       558 V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~--~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~  632 (835)
                      |.+++|+....+ +++.+.|..|++|.-...  +.  +....+  +.-.||+......++++|+..++|+|||+.. +.+
T Consensus        37 ~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~g--d~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~-kl~  113 (673)
T KOG4378|consen   37 DFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTG--DNAFCVACASQSLYEISGGQSGCVKIWDLRA-KLI  113 (673)
T ss_pred             ceeeeccccceEEEeecCCceeEEEecccCCCCccceeecccc--chHHHHhhhhcceeeeccCcCceeeehhhHH-HHH
Confidence            899999986642 344567889999964322  22  222222  2445555555568999999999999999994 556


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC----ceEEEEecCCCEEE-EEEcCCcEEEE
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRIL-AAAIENYISIL  707 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ll-~~s~dg~I~Iw  707 (835)
                      .+.+.+|.+.|+++.|+.... +|++++..|.|.|..+.++.....|..+    +.-+.|++..+.++ +++.+|.|.+|
T Consensus       114 hr~lkdh~stvt~v~YN~~De-yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vtlw  192 (673)
T KOG4378|consen  114 HRFLKDHQSTVTYVDYNNTDE-YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLW  192 (673)
T ss_pred             hhhccCCcceeEEEEecCCcc-eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEE
Confidence            889999999999999998754 7789999999999999998877777644    55788999877655 56677999999


Q ss_pred             ECCCCeEEEEE-cCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271          708 DVETQVCRLKL-QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       708 Dl~t~~~i~~l-~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg  784 (835)
                      |+....++..+ ..|..+...|||+|... +|++.+ |..|.+||++......++.    ...+...++|.++|.+|++|
T Consensus       193 Dv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~----y~~Plstvaf~~~G~~L~aG  268 (673)
T KOG4378|consen  193 DVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT----YSHPLSTVAFSECGTYLCAG  268 (673)
T ss_pred             eccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee----ecCCcceeeecCCceEEEee
Confidence            99988777655 45999999999999765 555556 9999999999763333332    35688999999999999999


Q ss_pred             EcCCeEEEEEcCCCcE-E-EeccCCCCeeEEEEeCCC
Q 003271          785 GCYETLELWNMTENKT-L-TLSAHDKLVSSLAASTVN  819 (835)
Q Consensus       785 s~dg~I~IwDl~~~~~-~-~l~~h~~~V~~la~spdg  819 (835)
                      ...|.|..||++..+. + .+.+|...|++++|-+.-
T Consensus       269 ~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  269 NSKGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cCCceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence            9999999999987663 3 777999999999998764

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2e-20  Score=218.84  Aligned_cols=241  Identities=19%  Similarity=0.347  Sum_probs=200.6

Q ss_pred             CCEEEEEEeCCCCE----EEEEeCCCeEEEEEcCCC------eEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEE
Q 003271          556 SKVESCHFSPDGKL----LATGGHDKKAVLWCTESF------TVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVW  624 (835)
Q Consensus       556 ~~V~sl~fSpdg~~----Lasgs~Dg~I~VWd~~t~------~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IW  624 (835)
                      .+.+.++|.+.|..    ||.|..||.|.+||....      ..+.++..|++.|..+.|++... +||+|+.||.|.||
T Consensus        65 ~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iW  144 (1049)
T KOG0307|consen   65 NRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIW  144 (1049)
T ss_pred             ccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEe
Confidence            45778999887665    888999999999998652      34466778999999999999754 99999999999999


Q ss_pred             ecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-----CceEEEEecCCC-EEEE
Q 003271          625 DTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-----GATQMRFQPRLG-RILA  697 (835)
Q Consensus       625 Dl~t~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-----~i~~l~fsp~~~-~ll~  697 (835)
                      |+.+.+..... .....+.|.+++|+..-.++|++++.+|.+.|||++..+.+..+..     .+..+.|+|+.. .+++
T Consensus       145 Dlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~  224 (1049)
T KOG0307|consen  145 DLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLV  224 (1049)
T ss_pred             ccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeee
Confidence            99986643332 2224578999999998889999999999999999998877766543     366899999974 4566


Q ss_pred             EEcC---CcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271          698 AAIE---NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS  771 (835)
Q Consensus       698 ~s~d---g~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s  771 (835)
                      ++.|   -.|.+||++.- .++..+.+|...|.++.|++.+ ++|++++ |+.|.+|+.+++   +.+.++....+.+..
T Consensus       225 As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tg---Evl~~~p~~~nW~fd  301 (1049)
T KOG0307|consen  225 ASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTG---EVLGELPAQGNWCFD  301 (1049)
T ss_pred             ecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCc---eEeeecCCCCcceee
Confidence            6655   36999999854 6677788999999999999976 7888887 999999999998   889999888999999


Q ss_pred             EEEeCCCC-EEEEEEcCCeEEEEEcCCCc
Q 003271          772 CVFHPTFP-SLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       772 v~fspdg~-~L~sgs~dg~I~IwDl~~~~  799 (835)
                      +.|+|..+ .+++++.||.|.||.+.+..
T Consensus       302 v~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  302 VQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             eeecCCCcchhhhheeccceeeeeeecCC
Confidence            99999987 67788889999999987655

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.83  E-value=4.6e-19  Score=182.08  Aligned_cols=266  Identities=18%  Similarity=0.297  Sum_probs=206.6

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCC------------eEEEEec-cCCCCeEEEEEC-------CCCCEEEEEEC
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESF------------TVKSTLE-EHTQWITDVRFS-------PSLSRLATSSA  617 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~------------~~i~~l~-~h~~~V~sv~fs-------pdg~~Latgs~  617 (835)
                      ...+.|+|||..|++-+.|..+.+|++..-            +...+++ .....|.+.+|.       |+..++++.+.
T Consensus        52 ~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr  131 (406)
T KOG2919|consen   52 LKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSR  131 (406)
T ss_pred             hccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccc
Confidence            557899999999999999999999987421            1111111 234568888886       56789999999


Q ss_pred             CCeEEEEecCCCCceeEEee--cCCC---CeEEEEEcCCCCcEEEEEeCCCcEEEEEC-CCCeeeeEe----------ec
Q 003271          618 DRTVRVWDTENPDYSLRTFT--GHST---TVMSLDFHPSKEDLLCSCDNNSEIRYWSI-NNGSCAGVF----------KS  681 (835)
Q Consensus       618 Dg~I~IWDl~t~~~~~~~~~--~h~~---~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl-~s~~~~~~~----------~~  681 (835)
                      |.-|++||.-+++. ...+.  .|-.   ...+++|+|||..++  ++...+|++||+ +.|......          .+
T Consensus       132 ~~PIh~wdaftG~l-raSy~~ydh~de~taAhsL~Fs~DGeqlf--aGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~g  208 (406)
T KOG2919|consen  132 DQPIHLWDAFTGKL-RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKG  208 (406)
T ss_pred             cCceeeeecccccc-ccchhhhhhHHhhhhheeEEecCCCCeEe--ecccceEEEeeccCCCCCCcchhhhhcccccccc
Confidence            99999999998875 22222  2333   356899999998766  455889999999 555422111          23


Q ss_pred             CceEEEEecCCC-EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcce
Q 003271          682 GATQMRFQPRLG-RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC  758 (835)
Q Consensus       682 ~i~~l~fsp~~~-~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~  758 (835)
                      -+.+++|+|... .+++++....+-||.-....++..+.+|.+.|+.++|.++|+.|++|+  |..|.+||++...  ..
T Consensus       209 iisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~--~p  286 (406)
T KOG2919|consen  209 IISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSR--DP  286 (406)
T ss_pred             eeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhcc--ch
Confidence            378899999765 788888999999999999999999999999999999999999999999  8899999999753  44


Q ss_pred             EEEeecCCC---ceEEEEEeCCCCEEEEEEcCCeEEEEEcCC-Cc-EEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271          759 IHELSCTGN---KFHSCVFHPTFPSLLVIGCYETLELWNMTE-NK-TLTLSAHDKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       759 i~~l~~~~~---~V~sv~fspdg~~L~sgs~dg~I~IwDl~~-~~-~~~l~~h~~~V~~la~spdg~~LaSgs~D  828 (835)
                      +..+..|..   .-.-+...|++.+|++|+.+|.|++||+++ +. +..+..|...|+.++++|--.++++++..
T Consensus       287 v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  287 VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc
Confidence            455554443   233445578999999999999999999988 55 44777899999999999998888887643

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=2.6e-19  Score=190.85  Aligned_cols=233  Identities=19%  Similarity=0.357  Sum_probs=184.2

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCe---EEEE------------------eccCCCCeEEEEECCC-CCEEEEEECCCeEEEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFT---VKST------------------LEEHTQWITDVRFSPS-LSRLATSSADRTVRVW  624 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~---~i~~------------------l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IW  624 (835)
                      |+|+|.|+.|..|.|||+.-..   +...                  -.+|++.|.++.|+.. ...||+||.|.+|++|
T Consensus       192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW  271 (463)
T KOG0270|consen  192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW  271 (463)
T ss_pred             cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence            6799999999999999975211   1111                  2369999999999876 5689999999999999


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEeecCceEEEEecCCC-EEEEEEc
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFKSGATQMRFQPRLG-RILAAAI  700 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~---~~~~~~~~~i~~l~fsp~~~-~ll~~s~  700 (835)
                      |+.+++. ..++..|...|.++.|+|....++++|+.|++|.+.|.+..   .....+.+.+..++|.+... .+++++.
T Consensus       272 D~~~g~p-~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td  350 (463)
T KOG0270|consen  272 DVDTGKP-KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD  350 (463)
T ss_pred             EcCCCCc-ceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence            9999874 78888899999999999999999999999999999999943   33455678899999999875 4666677


Q ss_pred             CCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          701 ENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       701 dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                      ||.|+-+|++.. +++.++..|..+|.+|+++..- .++++++ |+.|++|++..... ..+......-+...|.++.|+
T Consensus       351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~-~~v~~~~~~~~rl~c~~~~~~  429 (463)
T KOG0270|consen  351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSP-KSVKEHSFKLGRLHCFALDPD  429 (463)
T ss_pred             CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCC-cccccccccccceeecccCCC
Confidence            899999999975 9999999999999999998865 4556666 99999999976432 223322222344677788888


Q ss_pred             CCEE-EEEEcCCeEEEEEcCCCcEE
Q 003271          778 FPSL-LVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       778 g~~L-~sgs~dg~I~IwDl~~~~~~  801 (835)
                      -.++ ++|+..+.++|||+.+...+
T Consensus       430 ~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  430 VAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             cceEEEecCccceEEEeecccChhH
Confidence            7654 45555667999999876644

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=6.2e-17  Score=178.45  Aligned_cols=283  Identities=29%  Similarity=0.464  Sum_probs=226.7

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEE
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR  622 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~  622 (835)
                      ......+..|...|.+++|++++.++++++. |+.+++|++.+++.+..+.+|...|.+++|+|++. .+++++.|+.|+
T Consensus       145 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~  224 (466)
T COG2319         145 GKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIR  224 (466)
T ss_pred             CeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEE
Confidence            3556778899999999999999999888885 99999999999899999999999999999999988 555559999999


Q ss_pred             EEecCCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEe---ecCceEEEEecCCCEEEE
Q 003271          623 VWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF---KSGATQMRFQPRLGRILA  697 (835)
Q Consensus       623 IWDl~t~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~---~~~i~~l~fsp~~~~ll~  697 (835)
                      +||...+.. +. .+..|...+ ...|++++ .++++++.|+.+++|++..... +..+   ...+.++.|.|++..+++
T Consensus       225 ~wd~~~~~~-~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~  301 (466)
T COG2319         225 LWDLSTGKL-LRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLAS  301 (466)
T ss_pred             EEECCCCcE-EeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEE
Confidence            998885553 44 678888775 44899998 4666899999999999987654 4333   345888899998888888


Q ss_pred             EEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          698 AAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~Lasg-s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      ++.|+.+.+||..+........  .|...+..+.|.+++..++.+ . |+.+.+|++....   ....... ...+..+.
T Consensus       302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~-~~~~~~~~  377 (466)
T COG2319         302 GSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK---PLKTLEG-HSNVLSVS  377 (466)
T ss_pred             eeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc---eeEEecC-CceEEEEE
Confidence            8889889999999887766665  788889999994333556655 4 8899999998873   2222222 22288888


Q ss_pred             EeCCCCEEEE-EEcCCeEEEEEcCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          774 FHPTFPSLLV-IGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       774 fspdg~~L~s-gs~dg~I~IwDl~~~~~~~l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.+ ...++. +..++.+.+|+............. ..+..+.+++++..+++++.++.+++|+
T Consensus       378 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  440 (466)
T COG2319         378 FSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD  440 (466)
T ss_pred             ECC-CCCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEe
Confidence            888 533443 577889999999998887555444 8899999999999999999999999995

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.83  E-value=4.8e-19  Score=179.77  Aligned_cols=206  Identities=19%  Similarity=0.325  Sum_probs=168.1

Q ss_pred             ccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCC------ce--------eEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          594 EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YS--------LRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       594 ~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~------~~--------~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      ..|.+.|.++...+ .|+++++|+.||.|.|||+.+..      ..        .....+|.-.|.++.|.|-..-++.+
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts  119 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS  119 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence            35889999999987 58999999999999999997543      00        11224577889999999988889999


Q ss_pred             EeCCCcEEEEECCCCeeeeEee--cCceEEEEecCC---CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271          659 CDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS  733 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd  733 (835)
                      ++.|.++++||.++......|+  +.+..-+++|-.   -.+++|..+-.|++.|+.++.+.+.+.+|...|.++.|+|.
T Consensus       120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~  199 (397)
T KOG4283|consen  120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS  199 (397)
T ss_pred             ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence            9999999999999988877665  447777777753   34666777889999999999999999999999999999998


Q ss_pred             CCEEE-EEe-CCeEEEEEcCCCC------------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          734 GEYLA-SVS-DELVRVWSIGSGS------------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       734 g~~La-sgs-Dg~I~IwDl~t~~------------~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      .++++ +|+ ||.|++||++...            ....+..-..|.+.|..++|..++.++++++.|..+++|+...|+
T Consensus       200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~  279 (397)
T KOG4283|consen  200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR  279 (397)
T ss_pred             ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence            87765 455 9999999998642            111222234567889999999999999999999999999998775

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.82  E-value=7.6e-19  Score=192.65  Aligned_cols=114  Identities=24%  Similarity=0.405  Sum_probs=98.1

Q ss_pred             CCCeEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEE
Q 003271          722 KNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWN  794 (835)
Q Consensus       722 ~~~I~sl~fsp-dg~~Lasgs-Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwD  794 (835)
                      ...|+.+.|+| |...|++++ ||.|++|.+..+..    ...-..+..|...|+++.|+|-. ..|++++.|.+|++||
T Consensus       627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD  706 (1012)
T KOG1445|consen  627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD  706 (1012)
T ss_pred             CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence            45789999998 456677666 99999999987542    23455678899999999999954 6788899999999999


Q ss_pred             cCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          795 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       795 l~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.+.+.. .+.+|.+.|.+++|+|||+.+++.|.||+|+||+
T Consensus       707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~  748 (1012)
T KOG1445|consen  707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYE  748 (1012)
T ss_pred             hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeC
Confidence            9998876 8999999999999999999999999999999985

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.82  E-value=4e-20  Score=216.39  Aligned_cols=272  Identities=21%  Similarity=0.309  Sum_probs=214.4

Q ss_pred             EEEEeCCCC-EEEEEe----------CCCeEEEEEcCC--C----eEEEEeccCCCCeEEEEECCCCCE----EEEEECC
Q 003271          560 SCHFSPDGK-LLATGG----------HDKKAVLWCTES--F----TVKSTLEEHTQWITDVRFSPSLSR----LATSSAD  618 (835)
Q Consensus       560 sl~fSpdg~-~Lasgs----------~Dg~I~VWd~~t--~----~~i~~l~~h~~~V~sv~fspdg~~----Latgs~D  618 (835)
                      .++|+|++. ++|+|.          .+.++.||.+..  .    +.+..+. -....++++|.+.+..    |+.|.+|
T Consensus        11 ~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~-s~~rF~kL~W~~~g~~~~GlIaGG~ed   89 (1049)
T KOG0307|consen   11 TFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQ-SSNRFNKLAWGSYGSHSHGLIAGGLED   89 (1049)
T ss_pred             eEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccccccccccc-ccccceeeeecccCCCccceeeccccC
Confidence            478999886 566543          245566665432  2    2233332 2346789999987665    8899999


Q ss_pred             CeEEEEecCCC-----CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-----ecCceEEEE
Q 003271          619 RTVRVWDTENP-----DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KSGATQMRF  688 (835)
Q Consensus       619 g~I~IWDl~t~-----~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-----~~~i~~l~f  688 (835)
                      |.|.+||...-     ...+..+..|.+.|..++|++...+++++|+.||.|.|||+++.+.-...     ...|.+++|
T Consensus        90 G~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsW  169 (1049)
T KOG0307|consen   90 GNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSW  169 (1049)
T ss_pred             CceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEecc
Confidence            99999997652     12456778899999999999999999999999999999999885544333     356999999


Q ss_pred             ecCCCEEEE-EEcCCcEEEEECCCCeEEEEEcCCCC--CeEEEEEcCCCC-EEEEEe--CC--eEEEEEcCCCCCcceEE
Q 003271          689 QPRLGRILA-AAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGE-YLASVS--DE--LVRVWSIGSGSKGECIH  760 (835)
Q Consensus       689 sp~~~~ll~-~s~dg~I~IwDl~t~~~i~~l~~h~~--~I~sl~fspdg~-~Lasgs--Dg--~I~IwDl~t~~~~~~i~  760 (835)
                      +..-.++++ ++.+|.+.|||++..+.+..+..+..  .+..+.|+|++. .|++++  |+  .|.+||+|...  ..+.
T Consensus       170 NrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~as--sP~k  247 (1049)
T KOG0307|consen  170 NRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFAS--SPLK  247 (1049)
T ss_pred             chhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccC--Cchh
Confidence            987766555 55668999999999988888876655  467899999873 444444  33  89999998764  5667


Q ss_pred             EeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003271          761 ELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW  834 (835)
Q Consensus       761 ~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~-~LaSgs~DG~V~IW  834 (835)
                      ++.+|...|.++.|++.+ .+|++++.|+.|.+|+.++++++ .+....+.+..+.|+|... .|++++.||.|-||
T Consensus       248 ~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~  324 (1049)
T KOG0307|consen  248 ILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIY  324 (1049)
T ss_pred             hhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeee
Confidence            778999999999999977 88999999999999999999998 6767788999999999776 88889999999987

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.82  E-value=1.3e-18  Score=178.37  Aligned_cols=241  Identities=17%  Similarity=0.262  Sum_probs=183.1

Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc----eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       591 ~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~----~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      ..+++|.+.|++++|+.||++|+|++.|++|+||+++.-..    +++.-. .-+..+.+.|.||-+.+++++-...+++
T Consensus        80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~  158 (420)
T KOG2096|consen   80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC  158 (420)
T ss_pred             hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence            45789999999999999999999999999999999986331    112111 1235678999999999999998888999


Q ss_pred             EEECCCCe---eee------------EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 003271          667 YWSINNGS---CAG------------VFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN  731 (835)
Q Consensus       667 iwDl~s~~---~~~------------~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs  731 (835)
                      +|.+...+   ...            .....+..+-....+.+|++++.|..|.+||++ ++.+..+......-+..+.+
T Consensus       159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavS  237 (420)
T KOG2096|consen  159 VYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVS  237 (420)
T ss_pred             EEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeC
Confidence            99875432   111            111224445566667889999999999999999 88888777666677788999


Q ss_pred             CCCCEEEEEe-CCeEEEEEcCCCC-----CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC-------
Q 003271          732 TSGEYLASVS-DELVRVWSIGSGS-----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-------  798 (835)
Q Consensus       732 pdg~~Lasgs-Dg~I~IwDl~t~~-----~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~-------  798 (835)
                      |+|++|++++ .-.|+||.+--.+     ....+..+.+|...|..++|+++...+++.+.||+++|||++-.       
T Consensus       238 P~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDp  317 (420)
T KOG2096|consen  238 PDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDP  317 (420)
T ss_pred             CCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCc
Confidence            9999999999 8889999975332     23466788999999999999999999999999999999997521       


Q ss_pred             cEE-----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          799 KTL-----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       799 ~~~-----~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      +.+     .+.+..+....++++|.|..|+.+. ...+++|
T Consensus       318 k~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs~l~~~  357 (420)
T KOG2096|consen  318 KILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GSDLKVF  357 (420)
T ss_pred             hHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CCceEEE
Confidence            122     1222334455899999999887654 3345554

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.82  E-value=7.6e-19  Score=183.76  Aligned_cols=241  Identities=18%  Similarity=0.375  Sum_probs=183.9

Q ss_pred             cCCCCCEEEEEEeCCC--CEEEEEeCCCeEEEEEcC----------------CCeEEEEeccCCCCeEEEEECCC-CCEE
Q 003271          552 PASTSKVESCHFSPDG--KLLATGGHDKKAVLWCTE----------------SFTVKSTLEEHTQWITDVRFSPS-LSRL  612 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~----------------t~~~i~~l~~h~~~V~sv~fspd-g~~L  612 (835)
                      .+|.+.|.-+.-++-+  .+.|+-+..|.|.||++.                ..+++.++.+|...=+.++|+|- ...|
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            4677778777777644  466667788999999863                24567888999999999999993 3358


Q ss_pred             EEEECCCeEEEEecCCCCcee--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eee--eEeecCceE
Q 003271          613 ATSSADRTVRVWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCA--GVFKSGATQ  685 (835)
Q Consensus       613 atgs~Dg~I~IWDl~t~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~---~~~--~~~~~~i~~  685 (835)
                      ++|..-+.|++|...++...+  ..+.+|+..|..|+|+|..+.+|++|+.||+|+|||++.+   .++  +.+.+.+..
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNV  307 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNV  307 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceee
Confidence            888888899999998876543  5577899999999999999999999999999999999987   232  334466999


Q ss_pred             EEEecCCCEEEEEEcCCcEEEEECCC---CeEEEEEcCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcce--
Q 003271          686 MRFQPRLGRILAAAIENYISILDVET---QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGEC--  758 (835)
Q Consensus       686 l~fsp~~~~ll~~s~dg~I~IwDl~t---~~~i~~l~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~--  758 (835)
                      +.|+.....|++|+.||.++|||++.   +.++..|+-|..+|++|.|+|... .|++++ |..|.|||+......+.  
T Consensus       308 ISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~  387 (440)
T KOG0302|consen  308 ISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEID  387 (440)
T ss_pred             EEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhc
Confidence            99999999899999999999999985   578889999999999999998543 344444 99999999975432110  


Q ss_pred             -------------EEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEE
Q 003271          759 -------------IHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELW  793 (835)
Q Consensus       759 -------------i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~Iw  793 (835)
                                   +..+.-....+..+.|++.-+ +|++.+.|| +.||
T Consensus       388 ~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf  435 (440)
T KOG0302|consen  388 QEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF  435 (440)
T ss_pred             cccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence                         111111234567788888765 445555555 4444

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.81  E-value=8.3e-19  Score=187.53  Aligned_cols=254  Identities=17%  Similarity=0.250  Sum_probs=199.6

Q ss_pred             EEcCCCeEEEEeccCCCCeEEEEECCCC--CEEEEEECCCeEEEEecCC---CCceeEEeecCCCCeEEEEEcCCCCcEE
Q 003271          582 WCTESFTVKSTLEEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (835)
Q Consensus       582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg--~~Latgs~Dg~I~IWDl~t---~~~~~~~~~~h~~~V~sl~fsp~g~~ll  656 (835)
                      +|+.+......++-+.+.|++++|+|..  +++++|+.-|.|-+||+.+   ...-+..+..|..+|.+|.|+|.+...+
T Consensus       171 l~l~~~~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i  250 (498)
T KOG4328|consen  171 LDLDDYRILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQI  250 (498)
T ss_pred             cccccceecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhhe
Confidence            4444555556677789999999999964  5888999999999999952   2223567888999999999999988888


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEE
Q 003271          657 CSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCW  730 (835)
Q Consensus       657 ~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~f  730 (835)
                      ++.+.||+|++-|++.......+.     .....+.|+.+...++++..-|.+.+||++++.. ...+.-|...|.+|++
T Consensus       251 ~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~  330 (498)
T KOG4328|consen  251 YSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVAL  330 (498)
T ss_pred             eeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeec
Confidence            999999999999998764332222     3366677888888888888888999999998654 5566678899999999


Q ss_pred             cCCC-CEEEEEe-CCeEEEEEcCCCCCcc-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC----CCcEEEe
Q 003271          731 NTSG-EYLASVS-DELVRVWSIGSGSKGE-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT----ENKTLTL  803 (835)
Q Consensus       731 spdg-~~Lasgs-Dg~I~IwDl~t~~~~~-~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~----~~~~~~l  803 (835)
                      +|-. .+|++++ |++++|||++.-.... .+.....|...|.++.|+|.+-.|++.+.|..|+|||..    .......
T Consensus       331 NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~  410 (498)
T KOG4328|consen  331 NPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGT  410 (498)
T ss_pred             CCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccce
Confidence            9966 5677777 9999999999754433 345556689999999999999889999999999999984    2233333


Q ss_pred             ccCCC------CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          804 SAHDK------LVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       804 ~~h~~------~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..|..      ......|.|+..+|++|-.-..|-|+|
T Consensus       411 I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~  448 (498)
T KOG4328|consen  411 IPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFD  448 (498)
T ss_pred             eeccCcccccccchhheeCCCccEEEEeccCcceeEEc
Confidence            34432      244568999999999999888888775

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=1.4e-18  Score=181.70  Aligned_cols=283  Identities=16%  Similarity=0.231  Sum_probs=211.6

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC------CeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCe
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES------FTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT  620 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t------~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~  620 (835)
                      .+.+.+|.+.|.++.|+.++++||+|+.|..++||+++.      .+++.... .|...|.|++|....++|++|..+++
T Consensus        49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~  128 (609)
T KOG4227|consen   49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGT  128 (609)
T ss_pred             hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcce
Confidence            345679999999999999999999999999999999853      34554443 35589999999999999999999999


Q ss_pred             EEEEecCCCCceeEEee--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe------eeeEeecCceEEEEecCC
Q 003271          621 VRVWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGVFKSGATQMRFQPRL  692 (835)
Q Consensus       621 I~IWDl~t~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~------~~~~~~~~i~~l~fsp~~  692 (835)
                      |.+.|+++... +..+.  ...+.|+.+..+|. .+++++.+.++.|.+||++...      |..........+.|+|..
T Consensus       129 VI~HDiEt~qs-i~V~~~~~~~~~VY~m~~~P~-DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~  206 (609)
T KOG4227|consen  129 VIKHDIETKQS-IYVANENNNRGDVYHMDQHPT-DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPET  206 (609)
T ss_pred             eEeeeccccee-eeeecccCcccceeecccCCC-CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCC
Confidence            99999998653 33332  12348999999999 4577888999999999998654      122223446778899987


Q ss_pred             CE-EEEEEcCCcEEEEECCCCe-EEEEEc---C---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee
Q 003271          693 GR-ILAAAIENYISILDVETQV-CRLKLQ---G---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS  763 (835)
Q Consensus       693 ~~-ll~~s~dg~I~IwDl~t~~-~i~~l~---~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~  763 (835)
                      .. |++.+..+.+.+||++... .+....   +   ....-.++.|+|+|..|.+.- ...-.+||+.+..  ..+..+.
T Consensus       207 P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R--~~V~k~D  284 (609)
T KOG4227|consen  207 PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQR--CFVLKSD  284 (609)
T ss_pred             ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeeccc--ceeEecc
Confidence            55 4556667899999998653 222211   1   122346788999999888777 4456678887642  2222332


Q ss_pred             cC------CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC------------------------CcEEEeccCCCCeeEE
Q 003271          764 CT------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE------------------------NKTLTLSAHDKLVSSL  813 (835)
Q Consensus       764 ~~------~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~------------------------~~~~~l~~h~~~V~~l  813 (835)
                      ..      ...+.+|+|..+.. +++|+.+=.|++|.+..                        +....+.+|.+.++.+
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             CCCCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence            11      23466778877765 88888888999998732                        1233678999999999


Q ss_pred             EEeCCCCEEEEEECCCcEEEeC
Q 003271          814 AASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       814 a~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|++...+|++.+..+.++||.
T Consensus       364 RF~~H~~~l~SSGVE~~~KlWS  385 (609)
T KOG4227|consen  364 RFSQHNNLLVSSGVENSFKLWS  385 (609)
T ss_pred             eecCCcceEeccchhhheeccc
Confidence            9999999999999999999994

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.81  E-value=9.5e-19  Score=187.84  Aligned_cols=218  Identities=17%  Similarity=0.264  Sum_probs=184.1

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      .-+|++......|+++|+..++|+|||+....+.+.+++|...|++|.++....|||+++..|.|.|..+.++.. ...|
T Consensus        81 ~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~-tt~f  159 (673)
T KOG4378|consen   81 NAFCVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQK-TTTF  159 (673)
T ss_pred             hHHHHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCcc-ccce
Confidence            345555555568999999999999999998778888999999999999999999999999999999999998764 3334


Q ss_pred             ecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecCceEEEEecCCCE-EEEEEcCCcEEEEECC
Q 003271          637 TGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSGATQMRFQPRLGR-ILAAAIENYISILDVE  710 (835)
Q Consensus       637 ~~h-~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~i~~l~fsp~~~~-ll~~s~dg~I~IwDl~  710 (835)
                      ... ...|.-+.|++..+.+|.+++++|.|.+||+.....+..    +..+...|+|+|.... |++.+.|..|++||++
T Consensus       160 ~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~  239 (673)
T KOG4378|consen  160 TIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIR  239 (673)
T ss_pred             ecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecc
Confidence            333 456779999999999999999999999999987766544    3466888999998754 5567899999999999


Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271          711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  778 (835)
Q Consensus       711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg  778 (835)
                      .......+. -..+...++|.++|.+|++|. .|.|+.||++..+  .++..+..|...|++++|-+.-
T Consensus       240 s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k--~Pv~v~sah~~sVt~vafq~s~  305 (673)
T KOG4378|consen  240 SQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTK--APVAVRSAHDASVTRVAFQPSP  305 (673)
T ss_pred             cccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCC--CCceEeeecccceeEEEeeecc
Confidence            877666665 467899999999999999999 9999999999864  5777888899999999998764

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.80  E-value=1.7e-18  Score=184.81  Aligned_cols=250  Identities=18%  Similarity=0.263  Sum_probs=185.5

Q ss_pred             cCCCcEEEeccCCCCEEEeec--CCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeE
Q 003271          503 TDMDRFVDDGSLDDNVESFLS--PDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKA  579 (835)
Q Consensus       503 ~~~~~~l~tGs~D~~i~~~ls--~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I  579 (835)
                      .+..+++|.|..|..|++|..  .+...+...+++.....+...-..-..-.+|++.|.+++|+..- ..||+|+.|.+|
T Consensus       189 ~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV  268 (463)
T KOG0270|consen  189 GGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV  268 (463)
T ss_pred             CCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence            445679999999999999932  22233333333222211111111222345899999999998754 479999999999


Q ss_pred             EEEEcCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          580 VLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      ++||+.++++..++..|.+.|.++.|+|. ..+|++|+.|++|.+.|.+.....-..+ ...+.|..++|.|.....+++
T Consensus       269 ~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~w-k~~g~VEkv~w~~~se~~f~~  347 (463)
T KOG0270|consen  269 KLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEW-KFDGEVEKVAWDPHSENSFFV  347 (463)
T ss_pred             EEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceE-EeccceEEEEecCCCceeEEE
Confidence            99999999999999999999999999995 7799999999999999999644322222 245789999999999989999


Q ss_pred             EeCCCcEEEEECCCC-eeeeEee---cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeE--EEEEcCCCCCeEEEEEc
Q 003271          659 CDNNSEIRYWSINNG-SCAGVFK---SGATQMRFQPRL-GRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWN  731 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~-~~~~~~~---~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~fs  731 (835)
                      +..||+|+-+|++.. +++..++   .+|.+++++... +.+++++.|+.|++|++.....  +..-.-.-+...|.++.
T Consensus       348 ~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~  427 (463)
T KOG0270|consen  348 STDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALD  427 (463)
T ss_pred             ecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccC
Confidence            999999999999875 7776665   569999988865 5677788899999999875433  22111112346677778


Q ss_pred             CCCCEE-EEEe-CCeEEEEEcCCC
Q 003271          732 TSGEYL-ASVS-DELVRVWSIGSG  753 (835)
Q Consensus       732 pdg~~L-asgs-Dg~I~IwDl~t~  753 (835)
                      |+-.++ +.|+ .+.++|||+.+.
T Consensus       428 ~~~a~~la~GG~k~~~~vwd~~~~  451 (463)
T KOG0270|consen  428 PDVAFTLAFGGEKAVLRVWDIFTN  451 (463)
T ss_pred             CCcceEEEecCccceEEEeecccC
Confidence            876544 4444 668999999876

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2.5e-17  Score=168.60  Aligned_cols=268  Identities=20%  Similarity=0.274  Sum_probs=187.2

Q ss_pred             CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCC
Q 003271          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD  576 (835)
Q Consensus       499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~D  576 (835)
                      .+.++...+.+++++.|..+++|.+.++               ..++......+.|.+.|..|.|.+  -|..+|+++.|
T Consensus        18 dVs~D~~GRRmAtCSsDq~vkI~d~~~~---------------s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~D   82 (361)
T KOG2445|consen   18 DVSFDFYGRRMATCSSDQTVKIWDSTSD---------------SGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYD   82 (361)
T ss_pred             eeeecccCceeeeccCCCcEEEEeccCC---------------CCceEEeeeEEecCCcEEEEEecCccccceEEEEecC
Confidence            3445677799999999999999965333               345666777889999999999976  58899999999


Q ss_pred             CeEEEEEcC---------CCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCceeE-----------
Q 003271          577 KKAVLWCTE---------SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLR-----------  634 (835)
Q Consensus       577 g~I~VWd~~---------t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~~~~-----------  634 (835)
                      ++|.||.-.         ......++......|++|.|.|.  |-.|++++.||+||||+..+......           
T Consensus        83 rtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~  162 (361)
T KOG2445|consen   83 RTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVI  162 (361)
T ss_pred             CceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhcc
Confidence            999999641         23345677778889999999995  77899999999999999765432111           


Q ss_pred             -EeecCCCCeEEEEEcCCC--CcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271          635 -TFTGHSTTVMSLDFHPSK--EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVET  711 (835)
Q Consensus       635 -~~~~h~~~V~sl~fsp~g--~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t  711 (835)
                       ....+..+..|+.|+|..  ..+|+.|+.+.                                  +..-+.++||....
T Consensus       163 ~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~----------------------------------a~~~~~~~Iye~~e  208 (361)
T KOG2445|consen  163 DPPGKNKQPCFCVSWNPSRMHEPLIAVGSDED----------------------------------APHLNKVKIYEYNE  208 (361)
T ss_pred             CCcccccCcceEEeeccccccCceEEEEcccC----------------------------------CccccceEEEEecC
Confidence             111234445555555431  12333333210                                  00003455554332


Q ss_pred             ----CeEEEEEcCCCCCeEEEEEcCC----CCEEEEEe-CCeEEEEEcCCCC-----------------CcceEEEeecC
Q 003271          712 ----QVCRLKLQGHKNQVHSVCWNTS----GEYLASVS-DELVRVWSIGSGS-----------------KGECIHELSCT  765 (835)
Q Consensus       712 ----~~~i~~l~~h~~~I~sl~fspd----g~~Lasgs-Dg~I~IwDl~t~~-----------------~~~~i~~l~~~  765 (835)
                          ...+.++.+|..+|+.|+|.|+    -..|++++ || |+||.++...                 ..+.+..+..|
T Consensus       209 ~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H  287 (361)
T KOG2445|consen  209 NGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDH  287 (361)
T ss_pred             CcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCC
Confidence                2344566789999999999995    35677777 88 9999987411                 23456678899


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC---CcEEEeccCCCCeeEEEEe
Q 003271          766 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE---NKTLTLSAHDKLVSSLAAS  816 (835)
Q Consensus       766 ~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~---~~~~~l~~h~~~V~~la~s  816 (835)
                      .+.|+.+.|+-.|..|.+.+.||.|++|...-   .++......++.|....|+
T Consensus       288 ~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e~~~~~~~~~  341 (361)
T KOG2445|consen  288 NGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAEGSVTKPDFS  341 (361)
T ss_pred             CCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEeccCCCCCcccc
Confidence            99999999999999999999999999997643   3344333344444444444

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=2.9e-18  Score=187.96  Aligned_cols=241  Identities=19%  Similarity=0.268  Sum_probs=196.6

Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003271          589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (835)
Q Consensus       589 ~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iw  668 (835)
                      +-..+.+|++.|.||...|.|.+|++|+.||+|+||.+.++.+ ++++. ..+.|.||+|+|.+...+++...+..+.|.
T Consensus       392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRc-vr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~iv  469 (733)
T KOG0650|consen  392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRC-VRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIV  469 (733)
T ss_pred             eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceE-EEEEe-ecceeEEEEecCCCCceeEEEEecCceEEe
Confidence            4456789999999999999999999999999999999999885 55444 346899999999876655555444445554


Q ss_pred             ECCCCe---------------------------------------e-eeEeecCceEEEEecCCCEEEEEEcC---CcEE
Q 003271          669 SINNGS---------------------------------------C-AGVFKSGATQMRFQPRLGRILAAAIE---NYIS  705 (835)
Q Consensus       669 Dl~s~~---------------------------------------~-~~~~~~~i~~l~fsp~~~~ll~~s~d---g~I~  705 (835)
                      +..-|.                                       + +......+..+.|+..|++|++...+   ..|.
T Consensus       470 np~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vl  549 (733)
T KOG0650|consen  470 NPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVL  549 (733)
T ss_pred             CccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEE
Confidence            432220                                       0 01112347889999999999998865   4689


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      |+++.......-|....+.|.++.|+|...+|++++-..|+|||+...   ..+..+......|.+++++|.|..|++++
T Consensus       550 iHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kq---elvKkL~tg~kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  550 IHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQ---ELVKKLLTGSKWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             EEecccccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHH---HHHHHHhcCCeeeeeeeecCCCCeEEEec
Confidence            999987766666666678899999999999999999999999999876   66666666778899999999999999999


Q ss_pred             cCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          786 CYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       786 ~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .|+.+..||+.-....  ++..|...|++++|++.-.++++|+.||++.||
T Consensus       627 ~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~Vf  677 (733)
T KOG0650|consen  627 YDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVIVF  677 (733)
T ss_pred             CCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEEEE
Confidence            9999999999766433  788999999999999999999999999999886

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.79  E-value=1e-18  Score=175.43  Aligned_cols=283  Identities=19%  Similarity=0.212  Sum_probs=200.7

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ++..+++|.+.|+|+.|-.+++ |.+|..-|.|++|++.+......++ .|...|+.+.-.|+ ..|.+-+.|+.+.+|+
T Consensus         6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~   83 (323)
T KOG0322|consen    6 PFFVLRPHSSSVTSVLFQANER-LMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWT   83 (323)
T ss_pred             CeeEeccccchheehhhccchh-hhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEE
Confidence            4677889999999999998875 8899999999999999988888887 67788999998887 5788889999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCC-----CC---cEEEEEeCCC-cEEEEECCCCeeeeEee-------cCceEEEEe
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPS-----KE---DLLCSCDNNS-EIRYWSINNGSCAGVFK-------SGATQMRFQ  689 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~-----g~---~ll~sgs~Dg-~I~iwDl~s~~~~~~~~-------~~i~~l~fs  689 (835)
                      +.....    ...|.-.++++.|++.     .+   .+++.-+... .+.+-|......+...+       +.+.+..+.
T Consensus        84 ia~s~~----i~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~  159 (323)
T KOG0322|consen   84 IAYSAF----ISIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKD  159 (323)
T ss_pred             ccCcce----EEEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeecc
Confidence            986443    2234444555555542     11   1111111000 11112221111111111       223343322


Q ss_pred             cC-CC--EEEEEEcCCcEEEEECCCCeEEE----------EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003271          690 PR-LG--RILAAAIENYISILDVETQVCRL----------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK  755 (835)
Q Consensus       690 p~-~~--~ll~~s~dg~I~IwDl~t~~~i~----------~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~  755 (835)
                      .. +.  .+++|..+|.|.+||+.++..+.          ....|..+|.++.|.+.-..=++++ +..+..|++.....
T Consensus       160 ~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g  239 (323)
T KOG0322|consen  160 HACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG  239 (323)
T ss_pred             ccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccC
Confidence            22 22  35566678999999999874433          3345889999999986544444555 77888998865421


Q ss_pred             -cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          756 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       756 -~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                       ...-.++......|..+.+-||++.+++++.|+.|+||+.++...+ .+..|.+.|.+++|+|+..++|+++.|++|-+
T Consensus       240 slq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISL  319 (323)
T KOG0322|consen  240 SLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISL  319 (323)
T ss_pred             cccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEe
Confidence             1222233344567888999999999999999999999999999988 78899999999999999999999999999999


Q ss_pred             eC
Q 003271          834 WK  835 (835)
Q Consensus       834 Wd  835 (835)
                      |+
T Consensus       320 Wk  321 (323)
T KOG0322|consen  320 WK  321 (323)
T ss_pred             ee
Confidence            96

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.79  E-value=1e-17  Score=175.38  Aligned_cols=236  Identities=23%  Similarity=0.335  Sum_probs=185.4

Q ss_pred             ccCCCCeEEEEECCCC--CEEEEEECCCeEEEEecCC---------------CCceeEEeecCCCCeEEEEEcCCCCcEE
Q 003271          594 EEHTQWITDVRFSPSL--SRLATSSADRTVRVWDTEN---------------PDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (835)
Q Consensus       594 ~~h~~~V~sv~fspdg--~~Latgs~Dg~I~IWDl~t---------------~~~~~~~~~~h~~~V~sl~fsp~g~~ll  656 (835)
                      ..|.+.|.-+...+-+  .+.++=+..|.|.|||+..               ...++.++.+|...=+.|+|+|-..-.+
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L  227 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL  227 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence            3577778877776643  4556667789999999852               1235678889999999999999655557


Q ss_pred             EEEeCCCcEEEEECCCCeee------eEeecCceEEEEecCC-CEEEEEEcCCcEEEEECCCC---eEEEEEcCCCCCeE
Q 003271          657 CSCDNNSEIRYWSINNGSCA------GVFKSGATQMRFQPRL-GRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH  726 (835)
Q Consensus       657 ~sgs~Dg~I~iwDl~s~~~~------~~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~I~  726 (835)
                      ++|+--+.|++|...++...      ......+..++|+|.. +.|++|+.|+.|+|||++.+   .++. .+.|.+.|.
T Consensus       228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~-~kAh~sDVN  306 (440)
T KOG0302|consen  228 LSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVS-TKAHNSDVN  306 (440)
T ss_pred             ccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeE-eeccCCcee
Confidence            78888889999999886533      1233458889999976 56777889999999999987   3443 377999999


Q ss_pred             EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCcE----
Q 003271          727 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT----  800 (835)
Q Consensus       727 sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~----  800 (835)
                      .|.|+....+|++|+ ||+++|||++..+....+..++.|..+|+++.|+|.. ..|++++.|..|.|||+....-    
T Consensus       307 VISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~  386 (440)
T KOG0302|consen  307 VISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEI  386 (440)
T ss_pred             eEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhh
Confidence            999999988999999 9999999999988778999999999999999999965 5677888899999999853221    


Q ss_pred             -------------EEeccC--CCCeeEEEEeCCC-CEEEEEECCCc
Q 003271          801 -------------LTLSAH--DKLVSSLAASTVN-GMVASASHDKC  830 (835)
Q Consensus       801 -------------~~l~~h--~~~V~~la~spdg-~~LaSgs~DG~  830 (835)
                                   ..+.-|  ...|..+.|++.- .+|++.+.||.
T Consensus       387 ~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  387 DQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             ccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce
Confidence                         022334  4568889999854 48888888884

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=7.1e-16  Score=170.50  Aligned_cols=287  Identities=11%  Similarity=0.123  Sum_probs=192.4

Q ss_pred             EEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEcC-C
Q 003271          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTE-S  586 (835)
Q Consensus       509 l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~-t  586 (835)
                      .++...|+.|.+|.....                -.+..+..+. +.+....++++|++++|++++ .++.|.+|+++ +
T Consensus         5 y~~~~~~~~I~~~~~~~~----------------g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~   67 (330)
T PRK11028          5 YIASPESQQIHVWNLNHE----------------GALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD   67 (330)
T ss_pred             EEEcCCCCCEEEEEECCC----------------CceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC
Confidence            344467888999844211                1223344443 235577899999999987765 57899999986 3


Q ss_pred             CeE--EEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCce---eEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271          587 FTV--KSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       587 ~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~---~~~~~~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                      ++.  +.... ..+....++|+|++++|++++. ++.|.+|++++....   +..+ .+.....+++++|+++.+++++.
T Consensus        68 g~l~~~~~~~-~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~~~~~~~~~~~~p~g~~l~v~~~  145 (330)
T PRK11028         68 GALTFAAESP-LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQII-EGLEGCHSANIDPDNRTLWVPCL  145 (330)
T ss_pred             CceEEeeeec-CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeec-cCCCcccEeEeCCCCCEEEEeeC
Confidence            432  23322 3345678999999999988875 789999999753321   2222 23345678899999998888888


Q ss_pred             CCCcEEEEECCCCeeee-------Ee--ecCceEEEEecCCCEEEEEEc-CCcEEEEECCC--C--eEEEEEcCC-----
Q 003271          661 NNSEIRYWSINNGSCAG-------VF--KSGATQMRFQPRLGRILAAAI-ENYISILDVET--Q--VCRLKLQGH-----  721 (835)
Q Consensus       661 ~Dg~I~iwDl~s~~~~~-------~~--~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t--~--~~i~~l~~h-----  721 (835)
                      .++.|.+||+.+...+.       ..  ..+...+.|+|++++++++.. ++.|.+||+..  +  +.+..+..+     
T Consensus       146 ~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~  225 (330)
T PRK11028        146 KEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFS  225 (330)
T ss_pred             CCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCC
Confidence            88999999997633221       11  133578999999999988887 89999999973  2  333333221     


Q ss_pred             -CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcC
Q 003271          722 -KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT  796 (835)
Q Consensus       722 -~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~  796 (835)
                       ......+.++|++++|+++.  ++.|.+|++..... .+.+..... ......+.++|+|++|+++.. +++|.+|+++
T Consensus       226 ~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~-~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        226 DTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPT-ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec-cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence             12234688999999999886  78999999965421 123333332 235567899999999998886 7799999874


Q ss_pred             --CCcEEE--eccCCCCeeEEEE
Q 003271          797 --ENKTLT--LSAHDKLVSSLAA  815 (835)
Q Consensus       797 --~~~~~~--l~~h~~~V~~la~  815 (835)
                        ++....  .........+++|
T Consensus       305 ~~~g~l~~~~~~~~g~~P~~~~~  327 (330)
T PRK11028        305 GETGLLTELGRYAVGQGPMWVSV  327 (330)
T ss_pred             CCCCcEEEccccccCCCceEEEE
Confidence              444332  1122344555554

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=2e-18  Score=188.91  Aligned_cols=257  Identities=19%  Similarity=0.293  Sum_probs=198.2

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--------CCeEEEEeccCCCCeEEEEECCCCCEEEEEE
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--------SFTVKSTLEEHTQWITDVRFSPSLSRLATSS  616 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--------t~~~i~~l~~h~~~V~sv~fspdg~~Latgs  616 (835)
                      |..-.++..|.+.|..++|.+....|++++.||+|++|++.        ..+.+.+|.+|.++|.|+++.+++.++++|+
T Consensus       284 w~ik~tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg  363 (577)
T KOG0642|consen  284 WNIKFTLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGG  363 (577)
T ss_pred             cceeeeeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeec
Confidence            33444788999999999999999999999999999999982        2467789999999999999999999999999


Q ss_pred             CCCeEEEEecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cC--
Q 003271          617 ADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SG--  682 (835)
Q Consensus       617 ~Dg~I~IWDl~t---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~--  682 (835)
                      .||+|++|++..         .......+.||.+.|+.++++.... .|++|+.||+++.|+...... .+|.   ..  
T Consensus       364 ~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~-~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~  441 (577)
T KOG0642|consen  364 IDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD-RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGY  441 (577)
T ss_pred             cCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc-ceeeecCCceEEeeccCCcCc-cccCCccccCC
Confidence            999999996542         1233467899999999999999855 567999999999999976655 2332   11  


Q ss_pred             ceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC-------CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271          683 ATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  753 (835)
Q Consensus       683 i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~-------h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~  753 (835)
                      ...+.+.... ...++...-+.-.+++.+....+..+..       ....+.-+.++|.+.+.+++. |+.|+++|..++
T Consensus       442 Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~  521 (577)
T KOG0642|consen  442 PLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTG  521 (577)
T ss_pred             cceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccc
Confidence            2333333322 1222222233444445554444443332       123467788999998888888 999999999998


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH  806 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h  806 (835)
                         ..++....|...++++++.|+|.+|++++.|+.|++|.+....++ ....|
T Consensus       522 ---~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  522 ---KILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ---ccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence               888999999999999999999999999999999999999877765 33344

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.78  E-value=3e-16  Score=173.43  Aligned_cols=264  Identities=9%  Similarity=0.180  Sum_probs=183.1

Q ss_pred             EEEEeCCCeEEEEEcCC-Ce--EEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCC-CCceeEEeecCCCCeE
Q 003271          570 LATGGHDKKAVLWCTES-FT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTEN-PDYSLRTFTGHSTTVM  644 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t-~~--~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t-~~~~~~~~~~h~~~V~  644 (835)
                      +++...|+.|.+|++.+ ++  .+..+. +.+....++++|++++|++++ .++.|.+|++.. +...............
T Consensus         5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~   83 (330)
T PRK11028          5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT   83 (330)
T ss_pred             EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce
Confidence            34446789999999964 33  445554 345677899999999987765 478899999973 3321111122334577


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCC-e---eeeEee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEE-
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNG-S---CAGVFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRL-  716 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~---~~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~-  716 (835)
                      .++|+|+++.+++++..++.|.+|++.+. .   .+..+.  .+...++++|+++++++++. ++.|.+||+.+...+. 
T Consensus        84 ~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~  163 (330)
T PRK11028         84 HISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVA  163 (330)
T ss_pred             EEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccc
Confidence            89999999988877777999999999742 2   222222  23567889999999987775 5899999998632221 


Q ss_pred             ------EEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCcceEEEeecC------CCceEEEEEeCCCCEE
Q 003271          717 ------KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCT------GNKFHSCVFHPTFPSL  781 (835)
Q Consensus       717 ------~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~-~~~~~i~~l~~~------~~~V~sv~fspdg~~L  781 (835)
                            .+. .......+.|+|+|++++++.  ++.|.+||+... ...+.+..+...      ......+.++|+++++
T Consensus       164 ~~~~~~~~~-~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~l  242 (330)
T PRK11028        164 QEPAEVTTV-EGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHL  242 (330)
T ss_pred             cCCCceecC-CCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEE
Confidence                  111 234567899999999998877  789999999742 122334443321      1123468899999999


Q ss_pred             EEEEc-CCeEEEEEcCCCc-EEEeccC---CCCeeEEEEeCCCCEEEEEEC-CCcEEEeC
Q 003271          782 LVIGC-YETLELWNMTENK-TLTLSAH---DKLVSSLAASTVNGMVASASH-DKCVKIWK  835 (835)
Q Consensus       782 ~sgs~-dg~I~IwDl~~~~-~~~l~~h---~~~V~~la~spdg~~LaSgs~-DG~V~IWd  835 (835)
                      +++.. ++.|.+|++.... ...+..+   ......++|+|+|++|++++. +++|.||+
T Consensus       243 yv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~  302 (330)
T PRK11028        243 YACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYE  302 (330)
T ss_pred             EEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEE
Confidence            99865 6799999986432 2222222   235678999999999887775 88999984

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.77  E-value=1.2e-17  Score=173.27  Aligned_cols=264  Identities=16%  Similarity=0.298  Sum_probs=191.8

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEecCCCCc-eeEEeecCC-CCe
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDY-SLRTFTGHS-TTV  643 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h~-~~V  643 (835)
                      ..+|++...|.|++||..++..+..+++|...+..++|..  ....+.+|+.||+|++||++.... ....+..+. .+.
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            5688899999999999999999999999999999999977  467899999999999999997654 234455555 456


Q ss_pred             EEEEEcCCCCcEEEEEe----CCCcEEEEECCCCee-eeEe----ecCceEEEEecCC-CEEEEEEcCCcEEEEECCCCe
Q 003271          644 MSLDFHPSKEDLLCSCD----NNSEIRYWSINNGSC-AGVF----KSGATQMRFQPRL-GRILAAAIENYISILDVETQV  713 (835)
Q Consensus       644 ~sl~fsp~g~~ll~sgs----~Dg~I~iwDl~s~~~-~~~~----~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      .|++..-. +.++++|.    .+..|.+||++.... ++.+    ...|++++|+|.. +.|++|+.||.|.+||++...
T Consensus       121 ~~ld~nck-~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~  199 (376)
T KOG1188|consen  121 ICLDLNCK-KNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN  199 (376)
T ss_pred             eEeeccCc-CCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCc
Confidence            66666544 45777764    467899999998765 4433    4569999999986 678889999999999998542


Q ss_pred             ---EEEEEcCCCCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCcceEEEeecC------------CCceEEEEEeC
Q 003271          714 ---CRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHP  776 (835)
Q Consensus       714 ---~i~~l~~h~~~I~sl~fspdg--~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~------------~~~V~sv~fsp  776 (835)
                         .+.....|...|.++.|..++  ++.+.....+..+|+++.+..   ...+...            -..+..+....
T Consensus       200 EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~---~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~  276 (376)
T KOG1188|consen  200 EEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE---ETWLENPDVSADDLRKEDNCDYVINEHSPG  276 (376)
T ss_pred             chhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh---hhcccCccchhhhHHhhhhhhheeecccCC
Confidence               233344578889999999887  544444499999999988742   1111111            11222222233


Q ss_pred             CCCEEEEEEc-CCeEEEEEcC---CCcEE----Eec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          777 TFPSLLVIGC-YETLELWNMT---ENKTL----TLS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       777 dg~~L~sgs~-dg~I~IwDl~---~~~~~----~l~-~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +...+++++. .++..++-+.   ++...    .+. +|...|+++.|...+.+++||+.||.|.+|+
T Consensus       277 ~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk  344 (376)
T KOG1188|consen  277 DKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWK  344 (376)
T ss_pred             CcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEe
Confidence            4445555554 5555555433   33322    344 4778899999998899999999999999995

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=8.7e-18  Score=183.98  Aligned_cols=255  Identities=18%  Similarity=0.193  Sum_probs=194.8

Q ss_pred             ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC
Q 003271          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (835)
Q Consensus       497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D  576 (835)
                      +....+...+..+++++.|+.+++|.....           .......+..+.++++|.++|.|+++.+++..+++|+.|
T Consensus       297 ir~l~~~~sep~lit~sed~~lk~WnLqk~-----------~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~D  365 (577)
T KOG0642|consen  297 IRALAFHPSEPVLITASEDGTLKLWNLQKA-----------KKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGID  365 (577)
T ss_pred             hhhhhcCCCCCeEEEeccccchhhhhhccc-----------CCccccceeeeEEEecccCceEEEEecCCceEEEeeccC
Confidence            345567788899999999999999955331           223456778899999999999999999999999999999


Q ss_pred             CeEEEEEcCC----------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271          577 KKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (835)
Q Consensus       577 g~I~VWd~~t----------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl  646 (835)
                      |+|+.|++..          ......+.+|++.|+.++++.....|++++.||+|++|+......+........+...++
T Consensus       366 g~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsv  445 (577)
T KOG0642|consen  366 GTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSV  445 (577)
T ss_pred             ceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceE
Confidence            9999995531          123467789999999999999988999999999999999886554222222222344566


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  716 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~  716 (835)
                      ++......+.++...-+.--+++++....+..+.          ..+..+.++|.....+++..|+.|+++|..++..++
T Consensus       446 d~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~  525 (577)
T KOG0642|consen  446 DRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH  525 (577)
T ss_pred             eeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence            6654432233333333333344444444444443          226678889999999999999999999999999999


Q ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC
Q 003271          717 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT  765 (835)
Q Consensus       717 ~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~  765 (835)
                      ....|...++++++.|+|-+|.+++ |+.|++|.+...   .|+.....|
T Consensus       526 s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k---~~~~es~~~  572 (577)
T KOG0642|consen  526 SMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK---TCVLESTAH  572 (577)
T ss_pred             heeeccceecceeecCCCceEEeecCCceeehhhccch---heeeccccc
Confidence            9999999999999999999999999 999999998765   555555444

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.76  E-value=2e-18  Score=194.90  Aligned_cols=272  Identities=19%  Similarity=0.315  Sum_probs=215.0

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      .++.+.+|.+.|+|+.|...|.++++|+.|..|+||..++..+...+.+|.+.|++++.+.+..++++++.|..|++|.+
T Consensus       182 ~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl  261 (1113)
T KOG0644|consen  182 NIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRL  261 (1113)
T ss_pred             HHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEEec
Confidence            45667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-----e--ecCceEEEEecCCCEEEEEE
Q 003271          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----F--KSGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-----~--~~~i~~l~fsp~~~~ll~~s  699 (835)
                      .++. ++..+.+|++.|++|+|+|-.     +.+.||++++||.+-...+..     +  +.-+..+.|...+..+++++
T Consensus       262 ~~~~-pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs  335 (1113)
T KOG0644|consen  262 PDGA-PVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGS  335 (1113)
T ss_pred             CCCc-hHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccccccccc
Confidence            9866 588899999999999999863     677899999999982111111     1  12255666777788888999


Q ss_pred             cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          700 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       700 ~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                      .|+.-..|.......      +...+.-+.++.+- .+.++.- +..+++|++.++   ...+.+.+|...+..+.++|-
T Consensus       336 ~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g---~l~H~l~ghsd~~yvLd~Hpf  406 (1113)
T KOG0644|consen  336 RDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTG---QLLHNLMGHSDEVYVLDVHPF  406 (1113)
T ss_pred             CCcccccchhhHhhh------hccceEEEeccccccccceeeeeeeEeeeeecccc---hhhhhhcccccceeeeeecCC
Confidence            988877776643211      22222222222222 3334443 789999999998   778888899999999999998


Q ss_pred             CCEE-EEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          778 FPSL-LVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       778 g~~L-~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ...+ ..++.||.+.|||+-.+..+  ...+| +.+.+.+|++||..++....-|.+.|.
T Consensus       407 n~ri~msag~dgst~iwdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~  465 (1113)
T KOG0644|consen  407 NPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYIL  465 (1113)
T ss_pred             CcHhhhhccCCCceEeeecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEe
Confidence            7655 46788999999999988876  33454 556678999999988887777777764

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.75  E-value=2.1e-16  Score=162.68  Aligned_cols=272  Identities=18%  Similarity=0.253  Sum_probs=198.8

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEe-------CCCCEEEEEeCCCeE
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFS-------PDGKLLATGGHDKKA  579 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fS-------pdg~~Lasgs~Dg~I  579 (835)
                      ..+.+-+.|..+.+|..+.+....+.-+.. ....   ...++..  ....|+..+|-       |+..++|+.+.|.-|
T Consensus        62 SciL~~sedn~l~~~nlP~dlys~~~~~~~-~~~~---~~~~r~~--eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PI  135 (406)
T KOG2919|consen   62 SCILSLSEDNCLNCWNLPFDLYSKKADGPL-NFSK---HLSYRYQ--EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPI  135 (406)
T ss_pred             ceEEeecccCeeeEEecChhhcccCCCCcc-cccc---ceeEEec--cCCEEEEEEeeeccccCCCccceeeeccccCce
Confidence            466777889999999444432222211100 0000   1112222  23458888876       577899999999999


Q ss_pred             EEEEcCCCeEEEEecc--CCC---CeEEEEECCCCCEEEEEECCCeEEEEecC-CCCc-eeEEee-----cCCCCeEEEE
Q 003271          580 VLWCTESFTVKSTLEE--HTQ---WITDVRFSPSLSRLATSSADRTVRVWDTE-NPDY-SLRTFT-----GHSTTVMSLD  647 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~--h~~---~V~sv~fspdg~~Latgs~Dg~I~IWDl~-t~~~-~~~~~~-----~h~~~V~sl~  647 (835)
                      ++||.-+|+....+..  |-+   ...+++|+|||..|++| ....|+|+|+. .+.. .+....     +..+.|.|++
T Consensus       136 h~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a  214 (406)
T KOG2919|consen  136 HLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFA  214 (406)
T ss_pred             eeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeee
Confidence            9999999998877754  333   34689999999999877 66789999994 3332 122222     2367899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEecCCCEEEEEEc-CCcEEEEECCC-CeEEEEEcCCC
Q 003271          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAI-ENYISILDVET-QVCRLKLQGHK  722 (835)
Q Consensus       648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t-~~~i~~l~~h~  722 (835)
                      |+|.....++.++....+-||.-.....+..+   .++|+.++|.++|+.|++|+. +..|..||++. ..++..+..|.
T Consensus       215 ~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv  294 (406)
T KOG2919|consen  215 FSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHV  294 (406)
T ss_pred             ccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhc
Confidence            99998888999999999999988877776655   466999999999999999986 68999999996 45666777665


Q ss_pred             C-CeEE--EEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          723 N-QVHS--VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       723 ~-~I~s--l~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      . .-..  ....|++++|++|+ ||.|++||+....  ..+..+..+...++.++++|--+.+++++..
T Consensus       295 ~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~g--n~~sv~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  295 GDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLG--NEVSVTGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             cCccceEEEecCCCCceeeccCCCccEEEEecCCCC--CcccccccccccccceecCcccceeeeccCc
Confidence            5 2223  44578999999998 9999999998742  4566677788899999999998766666554

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.75  E-value=1.6e-16  Score=167.36  Aligned_cols=226  Identities=14%  Similarity=0.268  Sum_probs=181.3

Q ss_pred             EeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          592 TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       592 ~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      .+.+|+++|.+++|+| +...||+||+|.+|.||.+..+.      .++..+.+|...|-.+.|+|.-.++|++++.|..
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~  155 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT  155 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence            3468999999999999 46789999999999999987543      3467889999999999999999999999999999


Q ss_pred             EEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEe
Q 003271          665 IRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~-~I~sl~fspdg~~Lasgs  741 (835)
                      |.+||+.+++.+..+..+  +.++.|+.+|..+++++.|..|+|||.++++.+..-.+|.+ .-..+.|-.+|.++.+|-
T Consensus       156 v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGf  235 (472)
T KOG0303|consen  156 VSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGF  235 (472)
T ss_pred             EEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeecc
Confidence            999999999988777643  88999999999999999999999999999999988877765 344567888898666664


Q ss_pred             ----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEE----EeccCCCCeeE
Q 003271          742 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTL----TLSAHDKLVSS  812 (835)
Q Consensus       742 ----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~----~l~~h~~~V~~  812 (835)
                          +..+-+||-.+........++.. .+.|.---|.++...|+.++ .|+.|+.|.+......    .......+=..
T Consensus       236 sr~seRq~aLwdp~nl~eP~~~~elDt-SnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG  314 (472)
T KOG0303|consen  236 SRMSERQIALWDPNNLEEPIALQELDT-SNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRG  314 (472)
T ss_pred             ccccccceeccCcccccCcceeEEecc-CCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCcccc
Confidence                66999999887765555555554 55677777889988877666 4789999999877633    22223334455


Q ss_pred             EEEeCC
Q 003271          813 LAASTV  818 (835)
Q Consensus       813 la~spd  818 (835)
                      |.|-|.
T Consensus       315 ~g~mPK  320 (472)
T KOG0303|consen  315 MGFMPK  320 (472)
T ss_pred             cccccc
Confidence            555554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.74  E-value=2.2e-16  Score=160.38  Aligned_cols=261  Identities=20%  Similarity=0.286  Sum_probs=193.2

Q ss_pred             EEEEEe----CCCeEEEEEcCCCe--E-EEEeccCCCCeEEEEECCC-CCEEEEEECC-------CeEEEEecCCCCce-
Q 003271          569 LLATGG----HDKKAVLWCTESFT--V-KSTLEEHTQWITDVRFSPS-LSRLATSSAD-------RTVRVWDTENPDYS-  632 (835)
Q Consensus       569 ~Lasgs----~Dg~I~VWd~~t~~--~-i~~l~~h~~~V~sv~fspd-g~~Latgs~D-------g~I~IWDl~t~~~~-  632 (835)
                      .|++|.    .|+.|.+.+++...  + .+.|..|.+.|+.++-+|. .++|+|+..|       -.+.||.+...... 
T Consensus        28 cFlvgTnslK~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S  107 (370)
T KOG1007|consen   28 CFLVGTNSLKEDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS  107 (370)
T ss_pred             EEEEeccccCCcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence            344554    46778777766432  2 2556778899999999995 5556665442       25789998754321 


Q ss_pred             -------eEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEee--------cCceEEEEec-CCCE
Q 003271          633 -------LRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK--------SGATQMRFQP-RLGR  694 (835)
Q Consensus       633 -------~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~~--------~~i~~l~fsp-~~~~  694 (835)
                             +..+. .+-+.|.|+.|.|++..+++.  .|..|.+|++..+.. +..+.        ...++-+|+| ..+.
T Consensus       108 ~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm--~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn  185 (370)
T KOG1007|consen  108 NSSTLECVASLDTEAVGKINCVEWEPNSDKLASM--DDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN  185 (370)
T ss_pred             ccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEe--ccCceEEEEcccCcchheeecccccccccceecccccCCCCccc
Confidence                   12222 345689999999998766533  389999999987765 33332        2255667888 4456


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271          695 ILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS  771 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s  771 (835)
                      -++...|+++..||+++..+...+. .|...|..+.|+|+.. +|++|+ ||.|+|||.+..+  ..+.++.+|...|++
T Consensus       186 qv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk--~pv~el~~HsHWvW~  263 (370)
T KOG1007|consen  186 QVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK--FPVQELPGHSHWVWA  263 (370)
T ss_pred             eEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC--ccccccCCCceEEEE
Confidence            6677788999999999987777665 4888999999999875 456666 8999999999764  688899999999999


Q ss_pred             EEEeCCC-CEEEEEEcCCeEEEEEcCC------------------------------CcEEEeccCCCCeeEEEEeCCCC
Q 003271          772 CVFHPTF-PSLLVIGCYETLELWNMTE------------------------------NKTLTLSAHDKLVSSLAASTVNG  820 (835)
Q Consensus       772 v~fspdg-~~L~sgs~dg~I~IwDl~~------------------------------~~~~~l~~h~~~V~~la~spdg~  820 (835)
                      +.|+|.. ..|++++.|..|.+|....                              +.+.++..|++.|++++|+.-..
T Consensus       264 VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadP  343 (370)
T KOG1007|consen  264 VRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADP  343 (370)
T ss_pred             EEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCC
Confidence            9999975 5677888898999987521                              11225668999999999998666


Q ss_pred             -EEEEEECCCcEEE
Q 003271          821 -MVASASHDKCVKI  833 (835)
Q Consensus       821 -~LaSgs~DG~V~I  833 (835)
                       +||+-++||+|.|
T Consensus       344 WiFASLSYDGRviI  357 (370)
T KOG1007|consen  344 WIFASLSYDGRVII  357 (370)
T ss_pred             eeEEEeccCceEEe
Confidence             6788899999876

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=1.1e-17  Score=180.03  Aligned_cols=289  Identities=20%  Similarity=0.294  Sum_probs=226.1

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-ccCCCCeEEEEECCC--CCEEEEEECCCeEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS--LSRLATSSADRTVR  622 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~h~~~V~sv~fspd--g~~Latgs~Dg~I~  622 (835)
                      .....|..|.+.|..|.|+..|..|++|+.|..|.+||...++.+..+ .+|...|.-..|.|.  ...+++++.||.|+
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr  212 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVR  212 (559)
T ss_pred             hhhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCcee
Confidence            445678899999999999999999999999999999999988877666 579889988889884  56799999999999


Q ss_pred             EEecCCCCcee--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------cCceEEEEecC
Q 003271          623 VWDTENPDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------SGATQMRFQPR  691 (835)
Q Consensus       623 IWDl~t~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------~~i~~l~fsp~  691 (835)
                      +=.+....++.  ..+..|.++|..++..|+..+-|.+|+.|+.+.-+|++.+.....+.         .....++..|.
T Consensus       213 ~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~  292 (559)
T KOG1334|consen  213 VSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPR  292 (559)
T ss_pred             eeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCC
Confidence            98877655433  45667999999999999999999999999999999998775443332         23567888887


Q ss_pred             CC-EEEEEEcCCcEEEEECCCCe------EEEEEcC------CCCCeEEEEEcCCC-CEEEEEeCCeEEEEEcCCCCC--
Q 003271          692 LG-RILAAAIENYISILDVETQV------CRLKLQG------HKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSK--  755 (835)
Q Consensus       692 ~~-~ll~~s~dg~I~IwDl~t~~------~i~~l~~------h~~~I~sl~fspdg-~~LasgsDg~I~IwDl~t~~~--  755 (835)
                      .. .+++++.|-.+++||.+.-.      .+..+..      ..-.|+|++|+.++ .+|++-.|-.|++|.-..+..  
T Consensus       293 nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~  372 (559)
T KOG1334|consen  293 NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSE  372 (559)
T ss_pred             CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCC
Confidence            75 67888899999999987532      1233322      34579999999655 566666688999995433211  


Q ss_pred             c-------ceEEE-eecCCC--ceEEEE-EeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003271          756 G-------ECIHE-LSCTGN--KFHSCV-FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA  823 (835)
Q Consensus       756 ~-------~~i~~-l~~~~~--~V~sv~-fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~La  823 (835)
                      .       ..+.. +++|.+  .|..+- |-|...|+++|+.-|.|.||+-.+++++ .+.+-...|+||.=+|--.+||
T Consensus       373 p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLA  452 (559)
T KOG1334|consen  373 PDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLA  452 (559)
T ss_pred             CCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhh
Confidence            0       11222 556654  355554 5688899999999999999999999988 3444445899999999999999


Q ss_pred             EEECCCcEEEe
Q 003271          824 SASHDKCVKIW  834 (835)
Q Consensus       824 Sgs~DG~V~IW  834 (835)
                      +++-|..||||
T Consensus       453 sSGid~DVKIW  463 (559)
T KOG1334|consen  453 SSGIDHDVKIW  463 (559)
T ss_pred             ccCCccceeee
Confidence            99999999999

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.73  E-value=2.1e-16  Score=163.20  Aligned_cols=240  Identities=20%  Similarity=0.304  Sum_probs=182.9

Q ss_pred             CCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecC
Q 003271          553 ASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       553 gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~  627 (835)
                      .|....+.|+|+-|    ..+||+|+.-|.|+|.|+.++++...+.+|...|..|.|+|+ ..+|+++|.|..|++||+.
T Consensus        87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~  166 (385)
T KOG1034|consen   87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQ  166 (385)
T ss_pred             CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEecc
Confidence            46677888888764    347999999999999999999999999999999999999997 5689999999999999999


Q ss_pred             CCCceeEEe---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---------------eec--------
Q 003271          628 NPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---------------FKS--------  681 (835)
Q Consensus       628 t~~~~~~~~---~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~---------------~~~--------  681 (835)
                      +..+ +..+   .+|.+.|.+++|++++. .|++|+.|..|++|++...+....               |..        
T Consensus       167 ~~~C-v~VfGG~egHrdeVLSvD~~~~gd-~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~f  244 (385)
T KOG1034|consen  167 TDVC-VAVFGGVEGHRDEVLSVDFSLDGD-RIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDF  244 (385)
T ss_pred             CCeE-EEEecccccccCcEEEEEEcCCCC-eeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccc
Confidence            8764 5444   57999999999999988 777999999999999984322111               100        


Q ss_pred             --------CceEEEEecCCCEEEEEEcCCcEEEEECC-CC-------------eEEEEEcCCCCCeEEE--EEcCCCCEE
Q 003271          682 --------GATQMRFQPRLGRILAAAIENYISILDVE-TQ-------------VCRLKLQGHKNQVHSV--CWNTSGEYL  737 (835)
Q Consensus       682 --------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~-------------~~i~~l~~h~~~I~sl--~fspdg~~L  737 (835)
                              .+.|+.|-  |+++++-+.++.|..|... -.             ..+..+.-....|.-+  +|++-.+.|
T Consensus       245 st~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l  322 (385)
T KOG1034|consen  245 STTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML  322 (385)
T ss_pred             cccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence                    01122222  4678888889999999772 11             1222333334445544  556778999


Q ss_pred             EEEe-CCeEEEEEcCCCCCcce-EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          738 ASVS-DELVRVWSIGSGSKGEC-IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       738 asgs-Dg~I~IwDl~t~~~~~~-i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      +.|. .|.|++||++......+ ..........|...+|+.|+..|+..+.|+.|.-||..
T Consensus       323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            9999 99999999998755322 22223345678999999999999999999999999853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.72  E-value=5.8e-16  Score=178.98  Aligned_cols=278  Identities=17%  Similarity=0.245  Sum_probs=205.6

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccC---CCCeEEEEECC--CCCEEEEEECCCeEEEEecCCC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h---~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      ...-..+.|+|=...++++...-.|+|||.+.++....|..+   ...|+.+.+-.  |..++++|+.||.|+||+--..
T Consensus      1064 ~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~ 1143 (1387)
T KOG1517|consen 1064 NQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYAD 1143 (1387)
T ss_pred             CCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccc
Confidence            334567888888888999987789999999999998777544   34688888865  5678999999999999974322


Q ss_pred             C----ceeEEee-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC----ceEEEE-ecCCC
Q 003271          630 D----YSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG----ATQMRF-QPRLG  693 (835)
Q Consensus       630 ~----~~~~~~~-------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~----i~~l~f-sp~~~  693 (835)
                      .    ..+..+.       +..+.-.-++|.....+++++|+ -..|+|||.....++..+..+    ++.+.- ...|+
T Consensus      1144 ~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd-~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn 1222 (1387)
T KOG1517|consen 1144 KWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGD-VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGN 1222 (1387)
T ss_pred             ccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCC-eeEEEEEecccceeEeecccCCCccceeecccccCCc
Confidence            1    1121111       11122245677777676776665 789999999988888776643    344432 23368


Q ss_pred             EEEEEEcCCcEEEEECCCC---eEEEEEcCCCCC--eEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCcceEEEeecC-
Q 003271          694 RILAAAIENYISILDVETQ---VCRLKLQGHKNQ--VHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECIHELSCT-  765 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~--I~sl~fspdg~~-Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-  765 (835)
                      .+++|..||.|++||.+..   ..+.....|...  |..+.+.+.|.- |++++ ||.|++||++.... ....++..| 
T Consensus      1223 ~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-e~~~~iv~~~ 1301 (1387)
T KOG1517|consen 1223 IIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-ETFLTIVAHW 1301 (1387)
T ss_pred             eEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-cccceeeecc
Confidence            8999999999999999864   345667778877  999999887654 88888 99999999998522 222233332 


Q ss_pred             --CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-------CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          766 --GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       766 --~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-------h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        ++..+++..|+..+.|++|+. +.|+||++.......+..       ..+.+.|++|+|-.-++|+|+.|.+|.||.
T Consensus      1302 ~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs 1379 (1387)
T KOG1517|consen 1302 EYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYS 1379 (1387)
T ss_pred             ccCccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEee
Confidence              335899999999998888888 999999998766543322       235689999999998999999999999983

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.72  E-value=5.9e-16  Score=157.46  Aligned_cols=239  Identities=19%  Similarity=0.330  Sum_probs=178.8

Q ss_pred             cCCCCCEEEEEEeCCCC-----EEEEEeCCCeEEEEEcCC--CeEE--EEe-----ccCCCCeEEEEECC-CCCEEEEEE
Q 003271          552 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTES--FTVK--STL-----EEHTQWITDVRFSP-SLSRLATSS  616 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~-----~Lasgs~Dg~I~VWd~~t--~~~i--~~l-----~~h~~~V~sv~fsp-dg~~Latgs  616 (835)
                      ..|.-+++.+-|.|+..     +||+++  ..+++|.+..  .+..  ..+     ..+..++++..|+. +.++|.++|
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSS  170 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSS  170 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeec
Confidence            36888999999999763     466654  4899998873  2211  111     34677999999987 678999999


Q ss_pred             CCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee------cCceEEEE
Q 003271          617 ADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------SGATQMRF  688 (835)
Q Consensus       617 ~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~------~~i~~l~f  688 (835)
                      -|-++.|||++++.  .....+..|..+|..|+|...+..+|++++.||.||+||++..+....+-      .+...++|
T Consensus       171 iDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLsw  250 (364)
T KOG0290|consen  171 IDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSW  250 (364)
T ss_pred             ccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeecc
Confidence            99999999999862  34677889999999999999889999999999999999999876544432      23556778


Q ss_pred             ecCCC-EEEEEEcC-CcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCC---cceEE
Q 003271          689 QPRLG-RILAAAIE-NYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSK---GECIH  760 (835)
Q Consensus       689 sp~~~-~ll~~s~d-g~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~---~~~i~  760 (835)
                      ++.+- ++++...| ..|.|.|++.. .++..+.+|...|..++|.|.. ..|++++ |..+.|||+.....   ...+.
T Consensus       251 nkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPil  330 (364)
T KOG0290|consen  251 NKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPIL  330 (364)
T ss_pred             CcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchh
Confidence            77664 44444444 68999999964 7788999999999999999964 6777777 78999999976422   12233


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          761 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       761 ~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      .+. .+..|+.+.|++..+--++...++++.|.
T Consensus       331 ay~-a~~EVNqi~Ws~~~~Dwiai~~~kkleiL  362 (364)
T KOG0290|consen  331 AYT-AGGEVNQIQWSSSQPDWIAICFGKKLEIL  362 (364)
T ss_pred             hhh-ccceeeeeeecccCCCEEEEEecCeeeEE
Confidence            333 57789999999765434444444455543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.72  E-value=1.7e-15  Score=173.82  Aligned_cols=256  Identities=18%  Similarity=0.235  Sum_probs=188.3

Q ss_pred             CeEEEEEcCCC-eEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCce-----eEEeecCCCCeEEEEEc
Q 003271          577 KKAVLWCTESF-TVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYS-----LRTFTGHSTTVMSLDFH  649 (835)
Q Consensus       577 g~I~VWd~~t~-~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~-----~~~~~~h~~~V~sl~fs  649 (835)
                      +.+.||+++.. .+...+ .....|.|++|+|. ..+|+.|+.+|.|.+||+......     -.....|..+|..+.|.
T Consensus       222 ~~~~vW~~~~p~~Pe~~~-~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~  300 (555)
T KOG1587|consen  222 GVLLVWSLKNPNTPELVL-ESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWL  300 (555)
T ss_pred             ceEEEEecCCCCCceEEE-ecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEe
Confidence            47999999875 344444 35678999999994 678888999999999999876542     12345688999999997


Q ss_pred             CCCCc-EEEEEeCCCcEEEEECCCCeeee--------E-------eecCceEEEEecCC-CEEEEEEcCCcEEEEECCCC
Q 003271          650 PSKED-LLCSCDNNSEIRYWSINNGSCAG--------V-------FKSGATQMRFQPRL-GRILAAAIENYISILDVETQ  712 (835)
Q Consensus       650 p~g~~-ll~sgs~Dg~I~iwDl~s~~~~~--------~-------~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~  712 (835)
                      .+... -|++++.||.|..|+++.-....        .       -...++++.|.+.. ..+++|+.+|.|+.-.-...
T Consensus       301 ~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~  380 (555)
T KOG1587|consen  301 QNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGY  380 (555)
T ss_pred             ccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCC
Confidence            65332 35577789999999987543311        0       01347788888865 56888888899887433321


Q ss_pred             ---e-----EEEEEcCCCCCeEEEEEcCCCCEE-EEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE-
Q 003271          713 ---V-----CRLKLQGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-  782 (835)
Q Consensus       713 ---~-----~i~~l~~h~~~I~sl~fspdg~~L-asgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~-  782 (835)
                         .     ....+..|.++|+++.++|-+..+ .+++|-+|+||.....  ...+..+..+...+++++|+|..+.++ 
T Consensus       381 ~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~--~~Pl~~~~~~~~~v~~vaWSptrpavF~  458 (555)
T KOG1587|consen  381 TPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVI--ASPLLSLDSSPDYVTDVAWSPTRPAVFA  458 (555)
T ss_pred             cccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCC--CCcchhhhhccceeeeeEEcCcCceEEE
Confidence               1     122455688999999999977544 4445999999997732  156667777778899999999987655 


Q ss_pred             EEEcCCeEEEEEcCCCcE---EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          783 VIGCYETLELWNMTENKT---LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       783 sgs~dg~I~IwDl~~~~~---~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++..+|.|.|||+.....   ....-+....+.+.|++.|++|++|...|+|++|+
T Consensus       459 ~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~  514 (555)
T KOG1587|consen  459 TVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILK  514 (555)
T ss_pred             EEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEE
Confidence            455589999999865442   24444566778888999999999999999999985

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.71  E-value=4.1e-16  Score=164.19  Aligned_cols=202  Identities=20%  Similarity=0.326  Sum_probs=162.7

Q ss_pred             EEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCC-------eEEEEeccCCCCeEEEEECCC-CCEEEEEECC
Q 003271          548 FQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESF-------TVKSTLEEHTQWITDVRFSPS-LSRLATSSAD  618 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~-------~~i~~l~~h~~~V~sv~fspd-g~~Latgs~D  618 (835)
                      .-.+.||+++|..++|+| +...||+|+.|.+|.||.+...       +.+..+.+|...|--|+|+|. .+.|++++.|
T Consensus        74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~D  153 (472)
T KOG0303|consen   74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSD  153 (472)
T ss_pred             CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCC
Confidence            335679999999999999 5568999999999999998643       456788999999999999996 5689999999


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC----ceEEEEecCCCE
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG----ATQMRFQPRLGR  694 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~  694 (835)
                      .+|.|||+.++.. +..+. |.+-|++++|+.+|. ++++.+.|+.|+|||.++++.+..-.++    ...+.|-.++. 
T Consensus       154 n~v~iWnv~tgea-li~l~-hpd~i~S~sfn~dGs-~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-  229 (472)
T KOG0303|consen  154 NTVSIWNVGTGEA-LITLD-HPDMVYSMSFNRDGS-LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-  229 (472)
T ss_pred             ceEEEEeccCCce-eeecC-CCCeEEEEEeccCCc-eeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-
Confidence            9999999999885 34444 999999999999987 7779999999999999999988765432    45566777777 


Q ss_pred             EEEEEc----CCcEEEEECCCCeE---EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC
Q 003271          695 ILAAAI----ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS  754 (835)
Q Consensus       695 ll~~s~----dg~I~IwDl~t~~~---i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~  754 (835)
                      +++.+.    +..+-+||...-+.   ...+. ..+.|.---|++|..+|+.++  |+.|+.|.+....
T Consensus       230 i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~  297 (472)
T KOG0303|consen  230 IFTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP  297 (472)
T ss_pred             eeeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence            554443    57899998875432   23333 455676667889999888887  9999999998763

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.70  E-value=2.5e-15  Score=176.47  Aligned_cols=289  Identities=18%  Similarity=0.213  Sum_probs=207.8

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCC-------CeEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATS  615 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-------~~~i~~l~~h~~~V~sv~fspdg~~Latg  615 (835)
                      ....+..+..|...|..++.+++. .++++|+.||+|+||+...       .+...++......+.++.+.+.+..+|++
T Consensus      1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~ 1116 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVS 1116 (1431)
T ss_pred             cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEE
Confidence            445678888999999999988755 8999999999999999753       22334444456789999999999999999


Q ss_pred             ECCCeEEEEecCCCCc------eeEEeecCC-C-CeEEEEEcCCCC-cEEEEEeCCCcEEEEECCCCeeeeEee-----c
Q 003271          616 SADRTVRVWDTENPDY------SLRTFTGHS-T-TVMSLDFHPSKE-DLLCSCDNNSEIRYWSINNGSCAGVFK-----S  681 (835)
Q Consensus       616 s~Dg~I~IWDl~t~~~------~~~~~~~h~-~-~V~sl~fsp~g~-~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~  681 (835)
                      +.||.|++.+++....      ..+....+. + .|..-+|..... .+++.+...+.|..||+++......++     +
T Consensus      1117 t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG 1196 (1431)
T KOG1240|consen 1117 TKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG 1196 (1431)
T ss_pred             cCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcccc
Confidence            9999999999886221      111122222 2 233334443333 377788888999999999876655443     3


Q ss_pred             CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCC---CCEEEEEe---CCeEEEEEcCCCC
Q 003271          682 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTS---GEYLASVS---DELVRVWSIGSGS  754 (835)
Q Consensus       682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspd---g~~Lasgs---Dg~I~IwDl~t~~  754 (835)
                      -+++++.+|.+.+++.|+..|.+.+||++-+.++.... ++..+|..++.+|-   ....++++   .+.|.+|++.++.
T Consensus      1197 ~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~ 1276 (1431)
T KOG1240|consen 1197 LVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGL 1276 (1431)
T ss_pred             ceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCc
Confidence            49999999999999999999999999999988887665 34567777776653   34555544   5699999999873


Q ss_pred             CcceEEEeec-------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--------------
Q 003271          755 KGECIHELSC-------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------------  801 (835)
Q Consensus       755 ~~~~i~~l~~-------------------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--------------  801 (835)
                      .   -..+..                   +......+++...+.++++|+.|..|+.||....+..              
T Consensus      1277 ~---~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~ 1353 (1431)
T KOG1240|consen 1277 R---QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTN 1353 (1431)
T ss_pred             c---eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccccccccCcccccccc
Confidence            2   222211                   1122344566666778999999999999997432100              


Q ss_pred             -------------------------------------------EeccCCCCeeEEEEeCCC-CEEEEEECCCcEEEeC
Q 003271          802 -------------------------------------------TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIWK  835 (835)
Q Consensus       802 -------------------------------------------~l~~h~~~V~~la~spdg-~~LaSgs~DG~V~IWd  835 (835)
                                                                 ....|.+.|++|++.... .+|++++.||.|+||+
T Consensus      1354 ~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1354 SESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             chhccccccCCCccchhhhhhhhhcCchhhcccccccccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence                                                       012366778888876543 4899999999999996

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.70  E-value=5.7e-15  Score=146.90  Aligned_cols=266  Identities=15%  Similarity=0.173  Sum_probs=190.7

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCC----------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t----------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      .|.+-+|+|.+++|++|..+|.|.++.+++          ...+....+|.++|+.++|..  .+|++|+ ||.|+-|..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W   88 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEW   88 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeee
Confidence            477788999999999999999999998753          234455588999999999983  4677665 599999987


Q ss_pred             CCCCcee-------EEeecC-----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecC
Q 003271          627 ENPDYSL-------RTFTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPR  691 (835)
Q Consensus       627 ~t~~~~~-------~~~~~h-----~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~  691 (835)
                      .......       ....-|     -..|+++-..|..+.++.+| .|+.++.||+++|+..+.++++   +.++.--..
T Consensus        89 ~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   89 NEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             hhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            6432210       011112     24688999999877777666 5999999999999999999877   566666566


Q ss_pred             CCEEEEEEcCCcEEEEECCCCeEEEEEcCC----------CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEE
Q 003271          692 LGRILAAAIENYISILDVETQVCRLKLQGH----------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       692 ~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h----------~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~  761 (835)
                      ...+++|+.||++++||.++.+++..+...          ...|.+++  -+..++++|....+.+|.+++.   ++...
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGgGp~lslwhLrss---e~t~v  242 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGGGPKLSLWHLRSS---ESTCV  242 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecCCCceeEEeccCC---CceEE
Confidence            788999999999999999999998876531          22455555  4677898888889999999987   34433


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCC-CCEEEEEECCCcEEEe
Q 003271          762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV-NGMVASASHDKCVKIW  834 (835)
Q Consensus       762 l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spd-g~~LaSgs~DG~V~IW  834 (835)
                      +. -...+..|.|..+  .+++++....|.-|.+..--...........+...|+.. -++|-.++....+.|+
T Consensus       243 fp-ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  243 FP-IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNGVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             Ee-cccceeEeeeecc--eEEEeccccceeeeeeccEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence            33 2456777888655  577777777899888765333333333333444444432 2455566666677665

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=7e-16  Score=160.24  Aligned_cols=272  Identities=15%  Similarity=0.191  Sum_probs=195.1

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEE
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLW  582 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg~I~VW  582 (835)
                      .+..++++...+.|++|..                ..+   ..+..+++|...+..+.|..  ....+.+|+.||+|++|
T Consensus        39 ~e~~vav~lSngsv~lyd~----------------~tg---~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~w   99 (376)
T KOG1188|consen   39 FETAVAVSLSNGSVRLYDK----------------GTG---QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLW   99 (376)
T ss_pred             cceeEEEEecCCeEEEEec----------------cch---hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEE
Confidence            4578899999999999922                122   23445567777788888876  45679999999999999


Q ss_pred             EcCCCeEEEE--eccCC-CCeEEEEECCCCCEEEEEEC----CCeEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCc
Q 003271          583 CTESFTVKST--LEEHT-QWITDVRFSPSLSRLATSSA----DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       583 d~~t~~~i~~--l~~h~-~~V~sv~fspdg~~Latgs~----Dg~I~IWDl~t~~~~~~-~~~~h~~~V~sl~fsp~g~~  654 (835)
                      |+++......  +..|. .+..|++.+.++..+++|..    |-.|.+||++.....++ ....|.+.|+++.|+|...+
T Consensus       100 D~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pn  179 (376)
T KOG1188|consen  100 DIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPN  179 (376)
T ss_pred             EeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCC
Confidence            9988665533  34555 46677777777888888754    67899999998776443 45679999999999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCee----eeEee--cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcCCC-----
Q 003271          655 LLCSCDNNSEIRYWSINNGSC----AGVFK--SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQGHK-----  722 (835)
Q Consensus       655 ll~sgs~Dg~I~iwDl~s~~~----~~~~~--~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----  722 (835)
                      +|++|+.||.|.+||++....    +.++.  ..|..+.|..++ +.|.+.+......+|+++.+.+...+....     
T Consensus       180 lLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d  259 (376)
T KOG1188|consen  180 LLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADD  259 (376)
T ss_pred             eEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhh
Confidence            999999999999999976532    23333  447888888775 578999999999999999887665543211     


Q ss_pred             --------CCeEEEEEcCCCCE-EEEEe-CCeEEEEEcC---CCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCC
Q 003271          723 --------NQVHSVCWNTSGEY-LASVS-DELVRVWSIG---SGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYE  788 (835)
Q Consensus       723 --------~~I~sl~fspdg~~-Lasgs-Dg~I~IwDl~---t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg  788 (835)
                              .-|.+.+ ..++.+ ++.++ -+...++-+.   ++.....+..+.+ |...|.++.|.-.+.++++|+.||
T Consensus       260 ~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG  338 (376)
T KOG1188|consen  260 LRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDG  338 (376)
T ss_pred             HHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCc
Confidence                    1122221 122333 33344 4455555433   3333344444554 667788999998999999999999


Q ss_pred             eEEEEEcC
Q 003271          789 TLELWNMT  796 (835)
Q Consensus       789 ~I~IwDl~  796 (835)
                      .|.+|...
T Consensus       339 ~l~~Wk~~  346 (376)
T KOG1188|consen  339 LLQAWKVE  346 (376)
T ss_pred             eEEEEecC
Confidence            99999863

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=5.1e-15  Score=147.25  Aligned_cols=227  Identities=19%  Similarity=0.215  Sum_probs=167.3

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271          599 WITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD  669 (835)
                      .|..-+|+|.+++|++|..+|.|.++.+.+         ++..+..+.+|.++|+.++|+.+   ++++|+ ||.|+-|.
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d~---~Lls~g-dG~V~gw~   87 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHDD---FLLSGG-DGLVYGWE   87 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeehh---heeecc-CceEEEee
Confidence            466678999999999999999999998753         23345566899999999999933   565776 69999998


Q ss_pred             CCCCeeee------Ee---------e-cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271          670 INNGSCAG------VF---------K-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS  733 (835)
Q Consensus       670 l~s~~~~~------~~---------~-~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd  733 (835)
                      .+......      ..         . ..+..+-..|..+-++.++.|+.++.||+++++....+.+|...|+++.--..
T Consensus        88 W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~  167 (325)
T KOG0649|consen   88 WNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNA  167 (325)
T ss_pred             ehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeeccc
Confidence            76432210      00         1 34788899999999999999999999999999999999999999999998444


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCcceEEEeec------C-CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc
Q 003271          734 GEYLASVS-DELVRVWSIGSGSKGECIHELSC------T-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA  805 (835)
Q Consensus       734 g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~------~-~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~  805 (835)
                      ..-|++|+ ||+++|||.++.+....+...+.      + +..|-+++.  +..++++|+ ...+.+|+++..++..+..
T Consensus       168 ~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfp  244 (325)
T KOG0649|consen  168 NGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFP  244 (325)
T ss_pred             CcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEe
Confidence            44455666 99999999999843333322211      1 223444444  444565554 4589999999999987777


Q ss_pred             CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          806 HDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       806 h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      -...|..+.|..  +.+++++..+.|.-|
T Consensus       245 ipa~v~~v~F~~--d~vl~~G~g~~v~~~  271 (325)
T KOG0649|consen  245 IPARVHLVDFVD--DCVLIGGEGNHVQSY  271 (325)
T ss_pred             cccceeEeeeec--ceEEEeccccceeee
Confidence            778888888864  346666655555444

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.69  E-value=9.8e-15  Score=167.72  Aligned_cols=280  Identities=17%  Similarity=0.286  Sum_probs=209.7

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC----CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t----~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      ..|.-.++|.++||+++++|+|..||.|.||.--.    ......+.=|.+.|.+++|+++|.+|++|+..|.+.+|.+.
T Consensus       202 ~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~  281 (792)
T KOG1963|consen  202 VHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLE  281 (792)
T ss_pred             hhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeec
Confidence            35666799999999999999999999999996322    12335667799999999999999999999999999999999


Q ss_pred             CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--------------cCceEEEEecCCC
Q 003271          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------------SGATQMRFQPRLG  693 (835)
Q Consensus       628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--------------~~i~~l~fsp~~~  693 (835)
                      +++  ...+..-.++|..+.++|+++.+. .+..|..|.+....+.+....+.              +-.+.++++|.-+
T Consensus       282 T~~--kqfLPRLgs~I~~i~vS~ds~~~s-l~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~  358 (792)
T KOG1963|consen  282 TGK--KQFLPRLGSPILHIVVSPDSDLYS-LVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTN  358 (792)
T ss_pred             CCC--cccccccCCeeEEEEEcCCCCeEE-EEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCC
Confidence            987  466777788999999999987544 55569999998875544332221              2256788999888


Q ss_pred             EEEEEEcCCcEEEEECCCCeEEEEEcC-----C------CCCeEEEEEcCCCCEEEEEe---------CC--eEEEEEcC
Q 003271          694 RILAAAIENYISILDVETQVCRLKLQG-----H------KNQVHSVCWNTSGEYLASVS---------DE--LVRVWSIG  751 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h------~~~I~sl~fspdg~~Lasgs---------Dg--~I~IwDl~  751 (835)
                      .++..+..+.|.+||+-+.+.+..+..     +      .-.++.++.+..|.++++..         ||  .+++|-..
T Consensus       359 ~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n  438 (792)
T KOG1963|consen  359 SLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYN  438 (792)
T ss_pred             ceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEc
Confidence            888899999999999998776655431     2      22467777788899998874         22  68899877


Q ss_pred             CCCCcceEEE--eecCCCceEEEEEeC-CCC-EEEEEEcCCeEEEEEcCCCc----------EE-EeccCCCCeeEEEEe
Q 003271          752 SGSKGECIHE--LSCTGNKFHSCVFHP-TFP-SLLVIGCYETLELWNMTENK----------TL-TLSAHDKLVSSLAAS  816 (835)
Q Consensus       752 t~~~~~~i~~--l~~~~~~V~sv~fsp-dg~-~L~sgs~dg~I~IwDl~~~~----------~~-~l~~h~~~V~~la~s  816 (835)
                      .....-.+.+  ...|+..+...++.+ ... .+++++.||.++||-+.+.+          +. .-.-|..++++++|+
T Consensus       439 ~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs  518 (792)
T KOG1963|consen  439 PNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS  518 (792)
T ss_pred             CCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence            6543222222  335666655555543 333 78999999999999883322          22 122478999999999


Q ss_pred             CCCCEEEEEECCCcEEEeC
Q 003271          817 TVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       817 pdg~~LaSgs~DG~V~IWd  835 (835)
                      .||.+ ++++.|++|.|||
T Consensus       519 ~dGsl-la~s~~~~Itiwd  536 (792)
T KOG1963|consen  519 QDGSL-LAVSFDDTITIWD  536 (792)
T ss_pred             CCCcE-EEEecCCEEEEec
Confidence            99964 5566788999997

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.67  E-value=7.7e-15  Score=168.10  Aligned_cols=231  Identities=16%  Similarity=0.113  Sum_probs=162.5

Q ss_pred             CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC
Q 003271          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g  652 (835)
                      +..|.|||.+... ...+..|...+.+++|+|||+.|+.++.+   ..|++||+.++..  ..+........+++|+|+|
T Consensus       183 ~~~i~i~d~dg~~-~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~~~~~~wSPDG  259 (429)
T PRK01742        183 PYEVRVADYDGFN-QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGHNGAPAFSPDG  259 (429)
T ss_pred             eEEEEEECCCCCC-ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCccCceeECCCC
Confidence            4689999987655 45666788899999999999999988754   3699999987653  1222222334578999999


Q ss_pred             CcEEEEEeCCCcEE--EEECCCCeeeeEee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCC--CeEEEEEcCCCCCe
Q 003271          653 EDLLCSCDNNSEIR--YWSINNGSCAGVFK--SGATQMRFQPRLGRILAAA-IENYISILDVET--QVCRLKLQGHKNQV  725 (835)
Q Consensus       653 ~~ll~sgs~Dg~I~--iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t--~~~i~~l~~h~~~I  725 (835)
                      +.++++.+.+|.+.  +||+.+++......  ..+....|+|++..+++++ .++.+.||++..  +.. ..+ .+..  
T Consensus       260 ~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~-~~l-~~~~--  335 (429)
T PRK01742        260 SRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA-SLV-GGRG--  335 (429)
T ss_pred             CEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEe-cCCC--
Confidence            98887777788655  45666665443322  3367899999999887766 467777776643  322 222 3433  


Q ss_pred             EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc---CCCcEEE
Q 003271          726 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM---TENKTLT  802 (835)
Q Consensus       726 ~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl---~~~~~~~  802 (835)
                      .++.|+|||++|+..+...+.+||+.++.   ... +... .....+.|+|++++|++++.++.+.+|++   .......
T Consensus       336 ~~~~~SpDG~~ia~~~~~~i~~~Dl~~g~---~~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~  410 (429)
T PRK01742        336 YSAQISADGKTLVMINGDNVVKQDLTSGS---TEV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKAR  410 (429)
T ss_pred             CCccCCCCCCEEEEEcCCCEEEEECCCCC---eEE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEE
Confidence            46789999999988884556779998873   221 1111 12356789999999999999987777664   3334446


Q ss_pred             eccCCCCeeEEEEeCC
Q 003271          803 LSAHDKLVSSLAASTV  818 (835)
Q Consensus       803 l~~h~~~V~~la~spd  818 (835)
                      +..|.+.+..++|+|-
T Consensus       411 l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        411 LPGSDGQVKFPAWSPY  426 (429)
T ss_pred             ccCCCCCCCCcccCCC
Confidence            7788888999999984

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.67  E-value=3.8e-15  Score=164.67  Aligned_cols=238  Identities=16%  Similarity=0.219  Sum_probs=182.6

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      ...++++|.+.|+|++|+.||+.+|+|+.|+.|.||+..-...+ .+ .|.+.|.|+.|+|-...|++++-.. .-+|..
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~h~LasCsLsd-FglWS~  121 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGIL-KY-SHNDAIQCMSFNPITHQLASCSLSD-FGLWSP  121 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEeccccccee-ee-ccCCeeeEeecCchHHHhhhcchhh-ccccCh
Confidence            46778999999999999999999999999999999986432222 23 5999999999999999999987653 678887


Q ss_pred             CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCC-----CEEE
Q 003271          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRL-----GRIL  696 (835)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~-----~~ll  696 (835)
                      +....  ... .....|.+.+|..||. +++.|-.+|+|.+-+-...+.+..-.     .++.+++|+|..     ..+.
T Consensus       122 ~qK~V--~K~-kss~R~~~CsWtnDGq-ylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~a  197 (1081)
T KOG1538|consen  122 EQKSV--SKH-KSSSRIICCSWTNDGQ-YLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILA  197 (1081)
T ss_pred             hhhhH--Hhh-hhheeEEEeeecCCCc-EEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEE
Confidence            75432  111 1235688999999986 66788889999998765433333322     458999999975     4566


Q ss_pred             EEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271          697 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  775 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs  775 (835)
                      +.....++.+|.+.. +.+..-..-.-...|+.+.++|.|+..|+ |+.+.+|.-. +   ..+.++......|+.+...
T Consensus       198 V~DW~qTLSFy~LsG-~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR~-G---vrLGTvg~~D~WIWtV~~~  272 (1081)
T KOG1538|consen  198 VADWGQTLSFYQLSG-KQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTRD-G---VRLGTVGEQDSWIWTVQAK  272 (1081)
T ss_pred             EEeccceeEEEEecc-eeecccccCCCCchhheeccCCcEEEEccCCCceEEEeec-C---eEEeeccccceeEEEEEEc
Confidence            677777777777653 33332222344567899999999999888 9999999643 2   5666777778899999999


Q ss_pred             CCCCEEEEEEcCCeEEEEEcC
Q 003271          776 PTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       776 pdg~~L~sgs~dg~I~IwDl~  796 (835)
                      |++.++++|+.||+|..|++.
T Consensus       273 PNsQ~v~~GCqDGTiACyNl~  293 (1081)
T KOG1538|consen  273 PNSQYVVVGCQDGTIACYNLI  293 (1081)
T ss_pred             cCCceEEEEEccCeeehhhhH
Confidence            999999999999999999974

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.66  E-value=1.7e-13  Score=143.99  Aligned_cols=231  Identities=16%  Similarity=0.231  Sum_probs=172.2

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--eEEEEecCCCCce
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYS  632 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~  632 (835)
                      ...|..+.|+.|...|..|+.|| .++|+.+..............|..+-|+.  .++|..+.+.  .++++++..... 
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~~~-   80 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKKTT-   80 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccCce-
Confidence            44577888999999999999887 67888776554333333334566666654  4666665543  589999886553 


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC------ceEEEEecCCCEEEEEE--cCCcE
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG------ATQMRFQPRLGRILAAA--IENYI  704 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~------i~~l~fsp~~~~ll~~s--~dg~I  704 (835)
                      +..+ ....+|.++.++.+   .++++-. ..|+|||+++.+.++++...      +..+.++..+.+++.-+  ..|.|
T Consensus        81 ICe~-~fpt~IL~VrmNr~---RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV  155 (391)
T KOG2110|consen   81 ICEI-FFPTSILAVRMNRK---RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDV  155 (391)
T ss_pred             EEEE-ecCCceEEEEEccc---eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceE
Confidence            2222 24568999999854   3445543 34999999999998877532      34444444445666533  35899


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCcceEEEeecC--CCceEEEEEeCCCCE
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPS  780 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fspdg~~  780 (835)
                      .+||+.+-+.+..+..|++.+-+++|+++|.+||+++ .| .||||.+.++   ..+.+++..  ...|.+++|+|++.+
T Consensus       156 ~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G---~kl~eFRRG~~~~~IySL~Fs~ds~~  232 (391)
T KOG2110|consen  156 VLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG---QKLYEFRRGTYPVSIYSLSFSPDSQF  232 (391)
T ss_pred             EEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc---cEeeeeeCCceeeEEEEEEECCCCCe
Confidence            9999999999999999999999999999999999999 45 7999999988   666666543  345789999999999


Q ss_pred             EEEEEcCCeEEEEEcCC
Q 003271          781 LLVIGCYETLELWNMTE  797 (835)
Q Consensus       781 L~sgs~dg~I~IwDl~~  797 (835)
                      |.+.+..++|+||.++.
T Consensus       233 L~~sS~TeTVHiFKL~~  249 (391)
T KOG2110|consen  233 LAASSNTETVHIFKLEK  249 (391)
T ss_pred             EEEecCCCeEEEEEecc
Confidence            99999999999998854

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.66  E-value=3.6e-15  Score=161.85  Aligned_cols=260  Identities=17%  Similarity=0.243  Sum_probs=190.5

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEE-CC-------CCCEEEEEECCCeEEEE
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SP-------SLSRLATSSADRTVRVW  624 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~f-sp-------dg~~Latgs~Dg~I~IW  624 (835)
                      -|...|.||.|+.+...+.+++ |..+.+|...+......+....+.|....+ -+       ....|+.++.||.+.|.
T Consensus        12 r~~e~vc~v~w~~~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf~il   90 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRFVIL   90 (737)
T ss_pred             ccceeEEeecccccceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceEEEe
Confidence            4666778999998877666665 555655544333333333222232222222 11       23578889999999988


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC--eeeeEeecCceEEEEecCCCEEEEEEcCC
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKSGATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~--~~~~~~~~~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      +-.. + ..+....|.+.|.|-.|+|+|.-++ +.++||.|++|.-...  ..+......+.|++|.|+.+.++.+. .+
T Consensus        91 ~k~~-r-VE~sv~AH~~A~~~gRW~~dGtgLl-t~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~-g~  166 (737)
T KOG1524|consen   91 NKSA-R-VERSISAHAAAISSGRWSPDGAGLL-TAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ-GG  166 (737)
T ss_pred             cccc-h-hhhhhhhhhhhhhhcccCCCCceee-eecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-CC
Confidence            7553 2 3567788999999999999988554 8889999999986532  12233456799999999988776654 47


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271          703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                      .++|-.+.-...+...+.|.+-|.++.|++..++|++|+ |-..+|||-..    ..+..-..|..+|++++|.|+ ..+
T Consensus       167 h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G----~~Lf~S~~~ey~ITSva~npd-~~~  241 (737)
T KOG1524|consen  167 HISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQG----ANLFTSAAEEYAITSVAFNPE-KDY  241 (737)
T ss_pred             eEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccC----cccccCChhccceeeeeeccc-cce
Confidence            788888887777888899999999999999999999999 88999999654    466677788999999999999 433


Q ss_pred             EEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          782 LVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      +++ +.+++++          .....+.|..++||+||..+++|+..|.|.+
T Consensus       242 ~v~-S~nt~R~----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~  282 (737)
T KOG1524|consen  242 LLW-SYNTARF----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV  282 (737)
T ss_pred             eee-eeeeeee----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence            333 3334442          1244578999999999999999999987754

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.65  E-value=1.6e-13  Score=153.29  Aligned_cols=284  Identities=17%  Similarity=0.175  Sum_probs=184.2

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW  624 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IW  624 (835)
                      ..+..+......-..+.|++||+++++++.||.|.++|+.+.+.+.++.... ...++++++||+++++++ .++.|.|+
T Consensus        27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~i~~s~DG~~~~v~n~~~~~v~v~  105 (369)
T PF02239_consen   27 KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRGIAVSPDGKYVYVANYEPGTVSVI  105 (369)
T ss_dssp             SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEEEEE--TTTEEEEEEEETTEEEEE
T ss_pred             eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-CcceEEEcCCCCEEEEEecCCCceeEe
Confidence            4455555544434457899999999999999999999999999999997654 467899999999998776 58999999


Q ss_pred             ecCCCCceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEee--cCceEEEEecCCC
Q 003271          625 DTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--SGATQMRFQPRLG  693 (835)
Q Consensus       625 Dl~t~~~~~~~~~~-------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~~--~~i~~l~fsp~~~  693 (835)
                      |..+.+. +..+..       ....+..|..++.+..++++--+.+.|.+.|....+.+  ..+.  .......|+|++.
T Consensus       106 D~~tle~-v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr  184 (369)
T PF02239_consen  106 DAETLEP-VKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR  184 (369)
T ss_dssp             ETTT--E-EEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred             ccccccc-eeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence            9998764 444332       23467888888887767766666789999998765433  3333  2367789999999


Q ss_pred             EEEEEEc-CCcEEEEECCCCeEEEEEcC----CCCCeEEEE-------Ec--CCCCEE-EEEeCCeEEEEEcCCCCCcce
Q 003271          694 RILAAAI-ENYISILDVETQVCRLKLQG----HKNQVHSVC-------WN--TSGEYL-ASVSDELVRVWSIGSGSKGEC  758 (835)
Q Consensus       694 ~ll~~s~-dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~-------fs--pdg~~L-asgsDg~I~IwDl~t~~~~~~  758 (835)
                      +++++.. ++.|.++|.++++.+..+..    |..++..+-       |.  ..+.+. ...+.+.+.+||..+.   +.
T Consensus       185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~w---kv  261 (369)
T PF02239_consen  185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAW---KV  261 (369)
T ss_dssp             EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBT---SE
T ss_pred             eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcC---eE
Confidence            9888664 68999999999988776542    444444332       21  122222 2222445556776665   78


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEE---E-cCCeEEEEEcCCCcEEEeccC--CCCeeEEEEeCCCCEEEEEECCC--c
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVI---G-CYETLELWNMTENKTLTLSAH--DKLVSSLAASTVNGMVASASHDK--C  830 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sg---s-~dg~I~IwDl~~~~~~~l~~h--~~~V~~la~spdg~~LaSgs~DG--~  830 (835)
                      +.++...+.. ..+..+|+++++++.   + ..+.|.++|..+.+.+.....  ...+..+.|+++|+.+..+..|+  .
T Consensus       262 v~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~  340 (369)
T PF02239_consen  262 VKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGA  340 (369)
T ss_dssp             EEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTE
T ss_pred             EEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCE
Confidence            8888877666 888899999999998   3 346999999999987644332  23499999999999666555443  6


Q ss_pred             EEEeC
Q 003271          831 VKIWK  835 (835)
Q Consensus       831 V~IWd  835 (835)
                      |.|||
T Consensus       341 i~v~D  345 (369)
T PF02239_consen  341 IVVYD  345 (369)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            98886

...

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=2.1e-14  Score=150.57  Aligned_cols=282  Identities=14%  Similarity=0.155  Sum_probs=211.4

Q ss_pred             CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCC
Q 003271          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDK  577 (835)
Q Consensus       499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg  577 (835)
                      ...+...++++++|+.|..+++|.....          +...   +.+++.... .|...|.|++|....++|++|+.++
T Consensus        61 AlqFS~N~~~L~SGGDD~~~~~W~~de~----------~~~k---~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~  127 (609)
T KOG4227|consen   61 ALQFSHNDRFLASGGDDMHGRVWNVDEL----------MVRK---TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWG  127 (609)
T ss_pred             eeeeccCCeEEeecCCcceeeeechHHH----------Hhhc---CCCCceeccCccccceEEEEEccCCeeEecCCCcc
Confidence            4445556799999999999999932211          1111   112233333 4568999999999999999999999


Q ss_pred             eEEEEEcCCCeEEEEecc--CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce--eEEeecCCCCeEEEEEcCCCC
Q 003271          578 KAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~--h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~--~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      +|.+.|+++.+.+..+..  ..+.|+.+..+|..+.|++.+.++.|.+||+......  ............++.|+|...
T Consensus       128 ~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  128 TVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             eeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            999999999988877742  2348999999999999999999999999999865432  233344556788999999999


Q ss_pred             cEEEEEeCCCcEEEEECCCCeee-e------Eeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEE-EEEcCCC
Q 003271          654 DLLCSCDNNSEIRYWSINNGSCA-G------VFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCR-LKLQGHK  722 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s~~~~-~------~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i-~~l~~h~  722 (835)
                      .+|++.+..+-+.+||++..... .      .+..   .-..+.|+|.|+.+++.-....-.+||+-+.++. ..+. |.
T Consensus       208 ~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N  286 (609)
T KOG4227|consen  208 ALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HN  286 (609)
T ss_pred             eeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc-CC
Confidence            99999999999999999865321 1      1111   1356789999999998888777888998875543 3333 32


Q ss_pred             -------CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------------------cceEEEeecCCCceEEEEE
Q 003271          723 -------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------------------GECIHELSCTGNKFHSCVF  774 (835)
Q Consensus       723 -------~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~--------------------~~~i~~l~~~~~~V~sv~f  774 (835)
                             ..+.+++|..|-. +++|+ +=.|++|.+.....                    ...+..+.+|...++.+.|
T Consensus       287 ~~GY~N~~T~KS~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF  365 (609)
T KOG4227|consen  287 PNGYCNIKTIKSMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRF  365 (609)
T ss_pred             CCcceeeeeeeeeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceee
Confidence                   2466788865544 88888 45899999853210                    1234467899999999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEEc
Q 003271          775 HPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       775 spdg~~L~sgs~dg~I~IwDl  795 (835)
                      +|....|++.+....++||.-
T Consensus       366 ~~H~~~l~SSGVE~~~KlWS~  386 (609)
T KOG4227|consen  366 SQHNNLLVSSGVENSFKLWSD  386 (609)
T ss_pred             cCCcceEeccchhhheecccc
Confidence            999999999999999999964

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.65  E-value=2.1e-14  Score=148.29  Aligned_cols=280  Identities=16%  Similarity=0.227  Sum_probs=200.8

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC---CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES---FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t---~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      --..+|+|.+|++|+..+|++.....|.||....   .+..+++..|...|++|+|+|..+.|++++.|..-+||....+
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~   87 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSG   87 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCC
Confidence            3456899999999999999999999999998764   4577899999999999999999999999999999999998433


Q ss_pred             -Cc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------eeeEeecCceEEEEecCCCEEEEEEc
Q 003271          630 -DY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------CAGVFKSGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       630 -~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-------~~~~~~~~i~~l~fsp~~~~ll~~s~  700 (835)
                       +. +...+..++..++++.|+|.++ .|++|+....|.||-.+...       ..+.++..+.++.|+|++-.+++|+.
T Consensus        88 ~~WkptlvLlRiNrAAt~V~WsP~en-kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   88 GTWKPTLVLLRINRAATCVKWSPKEN-KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CeeccceeEEEeccceeeEeecCcCc-eEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence             32 3455667889999999999965 67788888888888776543       22345567999999999999999999


Q ss_pred             CCcEEEEECC-----C-------------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271          701 ENYISILDVE-----T-------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       701 dg~I~IwDl~-----t-------------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~  761 (835)
                      |+..+||..-     .             +..+..+....+.|..+.|+|+|..|+-.+ |..|.+-|......  .+..
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~--~v~~  244 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSE--RVQS  244 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCch--hccc
Confidence            9999988542     1             122233334567899999999999999888 99999999876531  2333


Q ss_pred             eecCCCceEEEEEeCC----------CCEEEEEEcCCeEEE-EEcC--CCc-----------------------EE--Ee
Q 003271          762 LSCTGNKFHSCVFHPT----------FPSLLVIGCYETLEL-WNMT--ENK-----------------------TL--TL  803 (835)
Q Consensus       762 l~~~~~~V~sv~fspd----------g~~L~sgs~dg~I~I-wDl~--~~~-----------------------~~--~l  803 (835)
                      +....-+..++.|-.+          ++.+++.+.++.+.. =++.  .+.                       ..  ..
T Consensus       245 ~~~~~lP~ls~~~ise~~vv~ag~~c~P~lf~~~~~~~l~~~~~ld~p~~s~s~~lt~a~~kF~~~d~k~~~~~~~~~~~  324 (361)
T KOG1523|consen  245 VATAQLPLLSVSWISENSVVAAGYDCGPVLFVTDEEGGLSFARRLDAPKASSSSPLTSAWRKFLGMDRKGRTENDRSARW  324 (361)
T ss_pred             hhhccCCceeeEeecCCceeecCCCCCceEEEeccccceeeehhcCCccccCCchhHHHHHHHhcccccccccccccccc
Confidence            3333355555555433          344455554541111 1111  100                       00  11


Q ss_pred             ccCCCCeeEEEEeCCCC----EEEEEECCCcEEEeC
Q 003271          804 SAHDKLVSSLAASTVNG----MVASASHDKCVKIWK  835 (835)
Q Consensus       804 ~~h~~~V~~la~spdg~----~LaSgs~DG~V~IWd  835 (835)
                      ..|...|+.|+....+.    .+-+++.||.|.|||
T Consensus       325 ~~h~N~i~~l~~~~~~~~~i~~f~t~g~Dg~~viw~  360 (361)
T KOG1523|consen  325 GAHQNCITSLRPFAGGKGKITKFSTSGLDGKLVIWD  360 (361)
T ss_pred             hHhHhhhhhhhecccCCcceEEEEecCccceEEEec
Confidence            34666676666443222    567888999999997

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=8.2e-15  Score=168.31  Aligned_cols=244  Identities=18%  Similarity=0.225  Sum_probs=186.4

Q ss_pred             CCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeE--E----EEeccCCCCeEEEEECCCC--CEEEEEECCCeEEEE
Q 003271          554 STSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTV--K----STLEEHTQWITDVRFSPSL--SRLATSSADRTVRVW  624 (835)
Q Consensus       554 H~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~--i----~~l~~h~~~V~sv~fspdg--~~Latgs~Dg~I~IW  624 (835)
                      ....|+|++|+| +..+||.|+.+|.|.+||+..+..  .    .....|..+|+.+.|..+.  .-|++++.||.|+.|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            456799999999 566788899999999999987654  2    2224689999999997754  449999999999999


Q ss_pred             ecCCCCceeEE-----ee------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-----------eEeecC
Q 003271          625 DTENPDYSLRT-----FT------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-----------GVFKSG  682 (835)
Q Consensus       625 Dl~t~~~~~~~-----~~------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-----------~~~~~~  682 (835)
                      +++.-..+...     ..      .-...++++.|.+...+.++.|+++|.|..-+....+.-           ..+.+.
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            88743321111     11      123468899999988889999999999987443322111           122355


Q ss_pred             ceEEEEecCCCEEEEEEcCCcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCCCE-EEEEe-CCeEEEEEcCCCCCcceE
Q 003271          683 ATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEY-LASVS-DELVRVWSIGSGSKGECI  759 (835)
Q Consensus       683 i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~fspdg~~-Lasgs-Dg~I~IwDl~t~~~~~~i  759 (835)
                      +..+.++|-+..++..+.|-+|+||... ...++..+..+...|++++|||.... ++++. ||.|.|||+..... ..+
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~-~Pv  479 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDE-EPV  479 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcccc-CCc
Confidence            8889999998888887779999999998 67788888888888999999998754 44455 99999999987543 344


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271          760 HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       760 ~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~  798 (835)
                      .+........+.+.|++.|+.|++|...|.|.+|++...
T Consensus       480 ~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  480 LSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccccccccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            444444667778888999999999999999999999643

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.65  E-value=1.4e-15  Score=165.40  Aligned_cols=236  Identities=17%  Similarity=0.257  Sum_probs=171.3

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-ccCCCCeEEEEECC--CCCEEEEEECCCeEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP--SLSRLATSSADRTVR  622 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~  622 (835)
                      .....+.||++.|.|++|+.||.+|++|+.|-.+.|||.-..+++..+ .+|...|.++.|-|  +.+++++|+.|..|+
T Consensus        41 ~lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~  120 (758)
T KOG1310|consen   41 DLEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIK  120 (758)
T ss_pred             chhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEE
Confidence            345678899999999999999999999999999999999988888776 58999999999998  467899999999999


Q ss_pred             EEecCC---------CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEe------------e
Q 003271          623 VWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVF------------K  680 (835)
Q Consensus       623 IWDl~t---------~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~------------~  680 (835)
                      ++|+..         .....+.+..|...|..|+..|++.+.+.++++||+|+-+|++..... ...            .
T Consensus       121 lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~l  200 (758)
T KOG1310|consen  121 LFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQL  200 (758)
T ss_pred             EEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhh
Confidence            999985         223456778899999999999999899999999999999999864221 111            1


Q ss_pred             cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC-----CCCCeEEEE-EcCCCCEEEEEeCCeEEEEEcCCC
Q 003271          681 SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG-----HKNQVHSVC-WNTSGEYLASVSDELVRVWSIGSG  753 (835)
Q Consensus       681 ~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h~~~I~sl~-fspdg~~LasgsDg~I~IwDl~t~  753 (835)
                      ....++.++|.. .+|++|+.|-..++||.+.......-.+     ......|+. |+|.+-   ...+|.+..      
T Consensus       201 ielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl---kn~~gn~~~------  271 (758)
T KOG1310|consen  201 IELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL---KNSQGNLDR------  271 (758)
T ss_pred             heeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc---cCccccccc------
Confidence            236788899976 4577788899999999643211100000     011112221 222211   000111100      


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                                 ....++-+.|+|+|..|++.-....|+++|+..++..
T Consensus       272 -----------~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~  308 (758)
T KOG1310|consen  272 -----------YITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSP  308 (758)
T ss_pred             -----------ceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCc
Confidence                       0123566789999988888888889999999877643

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.64  E-value=7.6e-14  Score=146.66  Aligned_cols=228  Identities=14%  Similarity=0.186  Sum_probs=174.0

Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCe
Q 003271          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGS  674 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D--g~I~iwDl~s~~  674 (835)
                      ...+..+.|+.+...|..|+.|| .++|+.+....+.. .......|..+-|+..   +++..+.+  ..+++++++.+.
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~-~~~~~~~IvEmLFSSS---LvaiV~~~qpr~Lkv~~~Kk~~   79 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFS-KDTEGVSIVEMLFSSS---LVAIVSIKQPRKLKVVHFKKKT   79 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhc-ccCCCeEEEEeecccc---eeEEEecCCCceEEEEEcccCc
Confidence            34677788999999999999998 68888876443111 1122334556667643   44444433  459999999887


Q ss_pred             eeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC---CCCCeEEEEEcCCCCEEEEEe---CCeEE
Q 003271          675 CAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS---DELVR  746 (835)
Q Consensus       675 ~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~fspdg~~Lasgs---Dg~I~  746 (835)
                      .+..+  ...+.++.++.  +.++++-.+ .|+|||+++-+.++++..   +...+.++.+++.+.||+.-+   .|.|.
T Consensus        80 ~ICe~~fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~  156 (391)
T KOG2110|consen   80 TICEIFFPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVV  156 (391)
T ss_pred             eEEEEecCCceEEEEEcc--ceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEE
Confidence            66554  45566666664  456665554 499999999998887764   445566777777778998754   68999


Q ss_pred             EEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEE-EeccC--CCCeeEEEEeCCCCEE
Q 003271          747 VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAH--DKLVSSLAASTVNGMV  822 (835)
Q Consensus       747 IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~~h--~~~V~~la~spdg~~L  822 (835)
                      |||+.+-   ..+..+..|.+.+.+++|+++|.+|++++..| .|+||.+.++..+ .+...  ...|.+++|++++.+|
T Consensus       157 l~d~~nl---~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L  233 (391)
T KOG2110|consen  157 LFDTINL---QPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFL  233 (391)
T ss_pred             EEEcccc---eeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeE
Confidence            9999887   78888899999999999999999999999999 6899999999877 34322  3568999999999999


Q ss_pred             EEEECCCcEEEeC
Q 003271          823 ASASHDKCVKIWK  835 (835)
Q Consensus       823 aSgs~DG~V~IWd  835 (835)
                      ++.+..++|+||+
T Consensus       234 ~~sS~TeTVHiFK  246 (391)
T KOG2110|consen  234 AASSNTETVHIFK  246 (391)
T ss_pred             EEecCCCeEEEEE
Confidence            9999999999985

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.64  E-value=1.6e-14  Score=165.50  Aligned_cols=220  Identities=16%  Similarity=0.182  Sum_probs=158.6

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEE
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVR  622 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~--i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~  622 (835)
                      +.+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++.  +..+.+|   ..+++|+|||+.|+.++ .+|.+.
T Consensus       197 ~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g~~~  273 (429)
T PRK01742        197 FIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH---NGAPAFSPDGSRLAFASSKDGVLN  273 (429)
T ss_pred             eEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc---cCceeECCCCCEEEEEEecCCcEE
Confidence            3456788889999999999999887654   3699999988754  3334333   44789999999888765 678766


Q ss_pred             EE--ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEeecCceEEEEecCCCEEEEEE
Q 003271          623 VW--DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKSGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       623 IW--Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~~~i~~l~fsp~~~~ll~~s  699 (835)
                      ||  |+.++.  ...+..+...+.+..|+|+|+.+++++..++.+.||++... .....+........|+|+++.+++++
T Consensus       274 Iy~~d~~~~~--~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~~~~~~SpDG~~ia~~~  351 (429)
T PRK01742        274 IYVMGANGGT--PSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRGYSAQISADGKTLVMIN  351 (429)
T ss_pred             EEEEECCCCC--eEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCCCCccCCCCCCEEEEEc
Confidence            65  555443  45566677778899999999988878777888888876432 21222222124577999999998887


Q ss_pred             cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          700 IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       700 ~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                      .+ .+.+||+.++........+  ...++.|+|+|++|++++ ++.+.+|++... ....+..+..+.+.+..++|+|-
T Consensus       352 ~~-~i~~~Dl~~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~-~G~~~~~l~~~~g~~~~p~wsp~  426 (429)
T PRK01742        352 GD-NVVKQDLTSGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSA-DGRFKARLPGSDGQVKFPAWSPY  426 (429)
T ss_pred             CC-CEEEEECCCCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEEC-CCCceEEccCCCCCCCCcccCCC
Confidence            75 4666999988655333222  345788999999999988 887787776431 11567777777888889999985

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.64  E-value=4.8e-14  Score=143.69  Aligned_cols=281  Identities=15%  Similarity=0.217  Sum_probs=200.4

Q ss_pred             EEEEecCCCCCEEEEEEeC--C-CCEEEEEeC----CCeEEEEEc--CCCeEEEEe-ccCCCCeEEEEECCCCC-----E
Q 003271          547 EFQLIPASTSKVESCHFSP--D-GKLLATGGH----DKKAVLWCT--ESFTVKSTL-EEHTQWITDVRFSPSLS-----R  611 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSp--d-g~~Lasgs~----Dg~I~VWd~--~t~~~i~~l-~~h~~~V~sv~fspdg~-----~  611 (835)
                      ++..+..+ -.++++.|+.  + ..+||.|+.    .++|.|..+  ++++.+..- ..|.-+++.+.|.|+..     +
T Consensus        37 eiy~Y~ap-~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdl  115 (364)
T KOG0290|consen   37 EIYTYNAP-WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDL  115 (364)
T ss_pred             eEEEecCC-CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcch
Confidence            34444443 3588899984  3 336888873    456666644  345544222 36889999999999753     4


Q ss_pred             EEEEECCCeEEEEecCCCCcee--------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee------ee
Q 003271          612 LATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------AG  677 (835)
Q Consensus       612 Latgs~Dg~I~IWDl~t~~~~~--------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~------~~  677 (835)
                      |||++  ..+|+|.+...+..+        ..-..+..++++++|+.-..+++.+++-|-++.|||++++..      +.
T Consensus       116 LATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLI  193 (364)
T KOG0290|consen  116 LATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLI  193 (364)
T ss_pred             hhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEE
Confidence            55543  479999988432111        123456789999999988888999999999999999998622      22


Q ss_pred             EeecCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC---CCCCeEEEEEcCCC-CEEEEEe--CCeEEEEEc
Q 003271          678 VFKSGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG---HKNQVHSVCWNTSG-EYLASVS--DELVRVWSI  750 (835)
Q Consensus       678 ~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h~~~I~sl~fspdg-~~Lasgs--Dg~I~IwDl  750 (835)
                      .+..++..++|...+ +.|++++.||.|++||++..+....+..   ...+...++|++.. +|+++..  ...|.|.|+
T Consensus       194 AHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDi  273 (364)
T KOG0290|consen  194 AHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDI  273 (364)
T ss_pred             ecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEe
Confidence            234569999999865 5577788999999999997654433322   24678889998854 6777766  458999999


Q ss_pred             CCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCcE------EEeccCCCCeeEEEEeCC-CCEE
Q 003271          751 GSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKT------LTLSAHDKLVSSLAASTV-NGMV  822 (835)
Q Consensus       751 ~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~------~~l~~h~~~V~~la~spd-g~~L  822 (835)
                      +...  ..+.++..|...|+.++|.|.. ..|++++.|..+.|||+...-.      +.....++.|+.|.|++. ...|
T Consensus       274 R~P~--tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dwi  351 (364)
T KOG0290|consen  274 RVPC--TPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDWI  351 (364)
T ss_pred             cCCC--cceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCEE
Confidence            9764  6788999999999999999975 5678888888999999965322      222346788999999964 4566


Q ss_pred             EEEECCCcEEE
Q 003271          823 ASASHDKCVKI  833 (835)
Q Consensus       823 aSgs~DG~V~I  833 (835)
                      +.+. ++++.|
T Consensus       352 ai~~-~kklei  361 (364)
T KOG0290|consen  352 AICF-GKKLEI  361 (364)
T ss_pred             EEEe-cCeeeE
Confidence            6654 444433

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=5e-14  Score=154.55  Aligned_cols=275  Identities=14%  Similarity=0.167  Sum_probs=202.1

Q ss_pred             CCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271          553 ASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~  631 (835)
                      +|....+.|..+|||+| +|+|..--.|+|||+....+...-.-....|.-.-++.|-..++.-..|.+|-+..--...+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy  128 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY  128 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence            57777899999999998 56677788999999988766544433345566666666766666667788887664432111


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILD  708 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwD  708 (835)
                      .++    -...-..++++.-.-.+++.| ....|+-++++.|..+..+.   +++.++.+++..+.|++|+.+|.|..||
T Consensus       129 ~~R----IP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwD  203 (703)
T KOG2321|consen  129 RTR----IPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWD  203 (703)
T ss_pred             eee----cCcCCccccccCCCccEEEee-cCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEec
Confidence            111    122334566664444455444 46789999999999887775   5588999999999999999999999999


Q ss_pred             CCCCeEEEEEc------CCCC-----CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271          709 VETQVCRLKLQ------GHKN-----QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  776 (835)
Q Consensus       709 l~t~~~i~~l~------~h~~-----~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp  776 (835)
                      .++...+..+.      .|.+     .|+++.|+.+|-.+++|+ +|.|.|||+++..+  .+..-....-+|..+.|.+
T Consensus       204 pR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~p--l~~kdh~~e~pi~~l~~~~  281 (703)
T KOG2321|consen  204 PRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKP--LLVKDHGYELPIKKLDWQD  281 (703)
T ss_pred             chhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCc--eeecccCCccceeeecccc
Confidence            99876655543      2333     499999999999999998 99999999998742  2333334456788899977


Q ss_pred             CCCE-EEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          777 TFPS-LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       777 dg~~-L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .+.. .++......++|||-.+|+..........|+.+|+-|++.+++++-.++.+..|
T Consensus       282 ~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~Ane~~~m~~y  340 (703)
T KOG2321|consen  282 TDQQNKVVSMDKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTANESSKMHTY  340 (703)
T ss_pred             cCCCceEEecchHHhhhcccccCCceeeccccCCcCceeeecCCceEEEecCCCcceeE
Confidence            6433 333344458999999999999777777889999999999999999888766543

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.63  E-value=1.6e-13  Score=157.08  Aligned_cols=232  Identities=13%  Similarity=0.119  Sum_probs=168.7

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      ..|.+||.+..... .+..+...+.+.+|+|||+.|+..+.   +..|++||+.+++.  ..+......+..+.|+|+|+
T Consensus       179 ~~l~~~d~dg~~~~-~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~--~~l~~~~~~~~~~~~SPDG~  255 (429)
T PRK03629        179 YELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGS  255 (429)
T ss_pred             eeEEEEcCCCCCCE-EeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCe--EEccCCCCCcCCeEECCCCC
Confidence            37899998765443 34456678999999999999887653   35799999987652  33333344456789999999


Q ss_pred             cEEEEEeCCC--cEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCeE
Q 003271          654 DLLCSCDNNS--EIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH  726 (835)
Q Consensus       654 ~ll~sgs~Dg--~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~  726 (835)
                      .++++.+.+|  .|++||+.+++......  ..+....|+|+++.|+.++.+ +  .|+++|+.++... .+..+...+.
T Consensus       256 ~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~-~lt~~~~~~~  334 (429)
T PRK03629        256 KLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQ  334 (429)
T ss_pred             EEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE-EeecCCCCcc
Confidence            8887766565  59999999887655443  346788999999999887764 3  4666677766543 3333444566


Q ss_pred             EEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCc
Q 003271          727 SVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK  799 (835)
Q Consensus       727 sl~fspdg~~Lasgs--D--g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~  799 (835)
                      +.+|+|||++|+..+  +  ..|++||+.++.    ...+.. ........|+|||++|+.++.++   .+++++++...
T Consensus       335 ~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~----~~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~  409 (429)
T PRK03629        335 DADVSSDGKFMVMVSSNGGQQHIAKQDLATGG----VQVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRF  409 (429)
T ss_pred             CEEECCCCCEEEEEEccCCCceEEEEECCCCC----eEEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCC
Confidence            789999999998766  3  368899998763    222222 12334678999999999999876   47888987777


Q ss_pred             EEEeccCCCCeeEEEEeC
Q 003271          800 TLTLSAHDKLVSSLAAST  817 (835)
Q Consensus       800 ~~~l~~h~~~V~~la~sp  817 (835)
                      ...+..|.+.+...+|+|
T Consensus       410 ~~~l~~~~~~~~~p~Wsp  427 (429)
T PRK03629        410 KARLPATDGQVKFPAWSP  427 (429)
T ss_pred             eEECccCCCCcCCcccCC
Confidence            777888889999999987

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.63  E-value=9.7e-16  Score=164.30  Aligned_cols=260  Identities=16%  Similarity=0.258  Sum_probs=209.0

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      -+.+.|+.+|++|+.|+..|.|-.+|..++++...+. -...|.++.|..+..+||++ ....++|||-..-  .++++.
T Consensus       132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~Gt--ElHClk  207 (545)
T KOG1272|consen  132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNNGT--ELHCLK  207 (545)
T ss_pred             CeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCCCc--EEeehh
Confidence            4568999999999999999999999999999988885 34679999999888888877 4568999997642  367776


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVC  714 (835)
Q Consensus       638 ~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~  714 (835)
                      .| ..|..+.|.|. .++|++++..|.++.-|+.+|+.+..+.   +.+..++-+|-+..+-+|...|+|.+|.....++
T Consensus       208 ~~-~~v~rLeFLPy-HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skeP  285 (545)
T KOG1272|consen  208 RH-IRVARLEFLPY-HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEP  285 (545)
T ss_pred             hc-Cchhhhcccch-hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcch
Confidence            55 56899999998 6789999999999999999999987765   4477788899988888999999999999999999


Q ss_pred             EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          715 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       715 i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      +..+..|.++|.+|++.++|+|+++.+ |..|+|||++..   ..++++.. ......+++|..|  +++.+....|.||
T Consensus       286 LvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~---~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~iw  359 (545)
T KOG1272|consen  286 LVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNF---YQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQIW  359 (545)
T ss_pred             HHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccc---cccceeec-CCCcccccccccc--ceeeecCCeeeee
Confidence            999889999999999999999999999 999999999987   44455444 4566778888776  5666666789999


Q ss_pred             E-cCCCc--E-EEecc--CCCCeeEEEEeCCCCEEEEEECCC
Q 003271          794 N-MTENK--T-LTLSA--HDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       794 D-l~~~~--~-~~l~~--h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      . .-.+.  . .....  ..+.|.++.|.|-...|-.|-..|
T Consensus       360 ~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  360 KDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             hhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence            4 33211  1 11222  245889999988766665554443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.62  E-value=1.6e-13  Score=157.89  Aligned_cols=273  Identities=21%  Similarity=0.227  Sum_probs=195.9

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCC---CEEEEEECCCeEEEEecCCCCceeE
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL---SRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg---~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      -..-.||+|+++++... +..|.||.+.++.++..+.+|..+++.+.+.|..   .++++++.||.|++||...+.. ++
T Consensus        19 ~~~avfSnD~k~l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~L-lk   96 (792)
T KOG1963|consen   19 KSPAVFSNDAKFLFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGEL-LK   96 (792)
T ss_pred             ecccccccCCcEEEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEE-EE
Confidence            33456999999888776 5789999999999999999999999999998864   4788999999999999998764 55


Q ss_pred             EeecCCCCeEEEEEcCC---CCcEEEEEeCCC------------cEEEEECCCCeee-eEe-ecC--ceEEEEecCCCEE
Q 003271          635 TFTGHSTTVMSLDFHPS---KEDLLCSCDNNS------------EIRYWSINNGSCA-GVF-KSG--ATQMRFQPRLGRI  695 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~---g~~ll~sgs~Dg------------~I~iwDl~s~~~~-~~~-~~~--i~~l~fsp~~~~l  695 (835)
                      ++..+ .+|..+.+.|.   ....+..+..|.            .++-+.+.+.... ..+ +..  ..++.+++.+. +
T Consensus        97 t~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~~~ge-~  174 (792)
T KOG1963|consen   97 TFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDNNSGE-F  174 (792)
T ss_pred             EEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEcCCce-E
Confidence            55433 34444444221   011111121121            1111211111000 000 011  35566666644 4


Q ss_pred             EEEEcCCcEEEEECCCCeEEEE----EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC-CCCcceEEEeecCCCce
Q 003271          696 LAAAIENYISILDVETQVCRLK----LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS-GSKGECIHELSCTGNKF  769 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t~~~i~~----l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t-~~~~~~i~~l~~~~~~V  769 (835)
                      .....+..+.+|+..+......    -..|...++|++++|++++++++. ||.|.+|.--. .........+.-|...|
T Consensus       175 ~~i~~~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V  254 (792)
T KOG1963|consen  175 KGIVHMCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEV  254 (792)
T ss_pred             EEEEEeeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEeccccc
Confidence            4555567788888877541111    123667789999999999999999 99999996443 22334556677789999


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .+++|+++|.+|++|+.++.+.+|.+.+++..-+..-.++|..+.++||+.+.+....|..|.+-
T Consensus       255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li  319 (792)
T KOG1963|consen  255 NSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLI  319 (792)
T ss_pred             ceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEE
Confidence            99999999999999999999999999999977778888999999999999999999999988763

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.62  E-value=7.2e-16  Score=174.46  Aligned_cols=271  Identities=19%  Similarity=0.225  Sum_probs=204.7

Q ss_pred             CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003271          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (835)
Q Consensus       499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~  578 (835)
                      ...++...+++.+|+.|..+++|-..                   +..+....+||.+.|+.++.+.+..++++++.|..
T Consensus       195 ca~fDrtg~~Iitgsdd~lvKiwS~e-------------------t~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~v  255 (1113)
T KOG0644|consen  195 CAIFDRTGRYIITGSDDRLVKIWSME-------------------TARCLASCRGHSGDITDLAVSSNNTMIAAASNDKV  255 (1113)
T ss_pred             eeeeccccceEeecCccceeeeeecc-------------------chhhhccCCCCccccchhccchhhhhhhhcccCce
Confidence            45577788999999999999999322                   22345677899999999999999999999999999


Q ss_pred             EEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC-CCC-ceeEEee-cCCCCeEEEEEcCCCCcE
Q 003271          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPD-YSLRTFT-GHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~-t~~-~~~~~~~-~h~~~V~sl~fsp~g~~l  655 (835)
                      |+||.+.++.++..+.+|++.|++|+|+|-.    +.+.||++++||.+ ... ++-+... ....-+.++-|...+. -
T Consensus       256 IrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~-~  330 (1113)
T KOG0644|consen  256 IRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENNGD-R  330 (1113)
T ss_pred             EEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccccccccCCCCCCcccccceeeeecccccc-c
Confidence            9999999999999999999999999999974    67889999999987 111 0001111 1224466666766655 4


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecC-CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC
Q 003271          656 LCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG  734 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg  734 (835)
                      +.+++.|+.-..|.+....+....   ..-+.++.+ ..+.+++-.+-.+.+|++.++...+.+.+|...+..+.++|-+
T Consensus       331 f~Tgs~d~ea~n~e~~~l~~~~~~---lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn  407 (1113)
T KOG0644|consen  331 FLTGSRDGEARNHEFEQLAWRSNL---LIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFN  407 (1113)
T ss_pred             cccccCCcccccchhhHhhhhccc---eEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCC
Confidence            569999999888877543221110   000111111 1345556667889999999999999999999999999999977


Q ss_pred             CEEEE-Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          735 EYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       735 ~~Las-gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      ..++- .+ ||...|||+-.+.   .+..+......+...+|+++|..++....-|.++|.....++
T Consensus       408 ~ri~msag~dgst~iwdi~eg~---pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  408 PRIAMSAGYDGSTIIWDIWEGI---PIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             cHhhhhccCCCceEeeecccCC---cceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            66654 33 9999999998884   333333446788899999999999999999999999876554

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.62  E-value=4.3e-14  Score=143.82  Aligned_cols=246  Identities=17%  Similarity=0.288  Sum_probs=181.2

Q ss_pred             EEEecCCCCCEEEEEEeC-CCCEEEEEeCC-------CeEEEEEcCC---------CeEEEEec-cCCCCeEEEEECCCC
Q 003271          548 FQLIPASTSKVESCHFSP-DGKLLATGGHD-------KKAVLWCTES---------FTVKSTLE-EHTQWITDVRFSPSL  609 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSp-dg~~Lasgs~D-------g~I~VWd~~t---------~~~i~~l~-~h~~~V~sv~fspdg  609 (835)
                      -+++..|.+.|+.++-+| |.++|+++..+       ..+.||.+..         .+++..+. .+-+.|.||.|.|++
T Consensus        56 skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns  135 (370)
T KOG1007|consen   56 SKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNS  135 (370)
T ss_pred             hhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCC
Confidence            345678999999999999 45566666542       3578998753         33444443 456689999999999


Q ss_pred             CEEEEEECCCeEEEEecCCCCceeEEe-----ecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEeec-
Q 003271          610 SRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-  681 (835)
Q Consensus       610 ~~Latgs~Dg~I~IWDl~t~~~~~~~~-----~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-  681 (835)
                      ..|++-. |..|.+|++.........+     .++....++-+|+|  +++ .+++ ..|+++..||+++.++...+.. 
T Consensus       136 ~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn-qv~t-t~d~tl~~~D~RT~~~~~sI~dA  212 (370)
T KOG1007|consen  136 DKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN-QVAT-TSDSTLQFWDLRTMKKNNSIEDA  212 (370)
T ss_pred             CeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc-eEEE-eCCCcEEEEEccchhhhcchhhh
Confidence            9888775 8889999998776533222     23456678889998  444 3333 3489999999999887776652 


Q ss_pred             C---ceEEEEecCCCEE-EEEEcCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCC
Q 003271          682 G---ATQMRFQPRLGRI-LAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       682 ~---i~~l~fsp~~~~l-l~~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~  754 (835)
                      +   +..+.|+|+..++ ++++.||.|+|||.+. ..++..+.+|...|.+|.|+|.. .+|++++ |..|.+|...+-.
T Consensus       213 Hgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svS  292 (370)
T KOG1007|consen  213 HGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVS  292 (370)
T ss_pred             hcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccc
Confidence            2   7888999997665 4566789999999985 57788999999999999999965 4555665 9999999754321


Q ss_pred             ---------------------C-----cceEEEeecCCCceEEEEEeCCCCEEEE-EEcCCeEEEEEcC
Q 003271          755 ---------------------K-----GECIHELSCTGNKFHSCVFHPTFPSLLV-IGCYETLELWNMT  796 (835)
Q Consensus       755 ---------------------~-----~~~i~~l~~~~~~V~sv~fspdg~~L~s-gs~dg~I~IwDl~  796 (835)
                                           +     ...+.++..|...|++++|+.-.+++++ -+.||.|.|=.+.
T Consensus       293 SE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  293 SEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             cccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence                                 0     1134467789999999999998887654 5778888776554

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.61  E-value=1.8e-13  Score=143.18  Aligned_cols=275  Identities=15%  Similarity=0.246  Sum_probs=190.7

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCc--
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDY--  631 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~--  631 (835)
                      -.+..++|++.-..+|++..|-.|++||-.. ++...++. ....|+|++|.|. ++.|++|+..| |+||..+....  
T Consensus        99 ~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~g-IciW~~s~tln~~  176 (445)
T KOG2139|consen   99 IDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICIWSDSRTLNAN  176 (445)
T ss_pred             cceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecce-eEEEEcCcccccc
Confidence            4578899999766789999999999999776 44445543 3457999999996 45677777655 99998753221  


Q ss_pred             -----------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEE
Q 003271          632 -----------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILA  697 (835)
Q Consensus       632 -----------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~  697 (835)
                                 .+....+| .+|+++.|.+||..++-+.-.|..|.|||..++.++....   ++++-+.|+|++.++++
T Consensus       177 r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  177 RNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             cccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence                       12233445 6899999999988666555568899999999988765542   55888999999999999


Q ss_pred             EEcCCcEEEEE-CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc------------ceEEEee-
Q 003271          698 AAIENYISILD-VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG------------ECIHELS-  763 (835)
Q Consensus       698 ~s~dg~I~IwD-l~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~------------~~i~~l~-  763 (835)
                      ++.|+..++|. .++.....-..+ .+.|...+|+|+|++|.....+.-++|.+....+.            ..+..+. 
T Consensus       256 At~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e  334 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE  334 (445)
T ss_pred             ecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEEEcCCceEEEEeecCCCccccCcccceeeeeeccchh
Confidence            99999999994 444544444443 45899999999999988887666666665432110            0111111 


Q ss_pred             ----c----CCCceEEEEEeCCCCEEEEEEcCC--------eEEEEEcCCCcEEEec--c--CCCCeeEEEEeC---CCC
Q 003271          764 ----C----TGNKFHSCVFHPTFPSLLVIGCYE--------TLELWNMTENKTLTLS--A--HDKLVSSLAAST---VNG  820 (835)
Q Consensus       764 ----~----~~~~V~sv~fspdg~~L~sgs~dg--------~I~IwDl~~~~~~~l~--~--h~~~V~~la~sp---dg~  820 (835)
                          .    -.+.+.+++|.|.|.+|++.-..+        .|.+||....-.+.+.  +  .......|+|+|   ++.
T Consensus       335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~  414 (445)
T KOG2139|consen  335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR  414 (445)
T ss_pred             hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence                1    146788999999999999986654        4777887766555332  1  111244556665   344


Q ss_pred             EEEEEECCCcEEEe
Q 003271          821 MVASASHDKCVKIW  834 (835)
Q Consensus       821 ~LaSgs~DG~V~IW  834 (835)
                      +|..+=..|.|.-|
T Consensus       415 lLsiaWsTGriq~y  428 (445)
T KOG2139|consen  415 LLSIAWSTGRIQRY  428 (445)
T ss_pred             EEEEEeccCceEee
Confidence            55555556665543

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.60  E-value=8.3e-14  Score=161.45  Aligned_cols=283  Identities=14%  Similarity=0.209  Sum_probs=195.2

Q ss_pred             ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCC
Q 003271          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDK  577 (835)
Q Consensus       500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg  577 (835)
                      ..+...+..+++......|.+|.....                ..+..+..-......|+.+.+-.  |..+|++|+.||
T Consensus      1070 ~~~hpf~p~i~~ad~r~~i~vwd~e~~----------------~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dG 1133 (1387)
T KOG1517|consen 1070 LKFHPFEPQIAAADDRERIRVWDWEKG----------------RLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDG 1133 (1387)
T ss_pred             eeecCCCceeEEcCCcceEEEEecccC----------------ceeccccCCCCCCCccceeeeecccchhheeeeccCc
Confidence            344555667777666677777744333                22222222223445689998866  556899999999


Q ss_pred             eEEEEEc-----CCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271          578 KAVLWCT-----ESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (835)
Q Consensus       578 ~I~VWd~-----~t~~~i~~l~~-------h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s  645 (835)
                      .|+||+-     ++.+.+..+.+       ..+.=.-+.|.....+|++++.-..|+|||......+.....+....|++
T Consensus      1134 vIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTa 1213 (1387)
T KOG1517|consen 1134 VIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTA 1213 (1387)
T ss_pred             eEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCcccee
Confidence            9999963     22344433321       11111345677766677777778899999999876655555666677888


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEee---c--CceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEE-
Q 003271          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK---S--GATQMRFQPRL-GRILAAAIENYISILDVETQVCR-  715 (835)
Q Consensus       646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~~---~--~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i-  715 (835)
                      +.-+-....++++|-.||.|++||.+....   +...+   .  +|..+.+.+.| +.+++|+.+|.|++||++..... 
T Consensus      1214 LS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~ 1293 (1387)
T KOG1517|consen 1214 LSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKET 1293 (1387)
T ss_pred             ecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccc
Confidence            877766667999999999999999986432   22222   2  27788888865 45999999999999999974221 


Q ss_pred             -EEEcCC---CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEE----eecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          716 -LKLQGH---KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE----LSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       716 -~~l~~h---~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~----l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                       ..+..|   .+.++++..++...++++|+.+.|+||++..... ..+..    +....+.+.+++|||....+++|..|
T Consensus      1294 ~~~iv~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~D 1372 (1387)
T KOG1517|consen 1294 FLTIVAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSAD 1372 (1387)
T ss_pred             cceeeeccccCccceeeeeccCCCeeeecCcceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCC
Confidence             222222   2358999999999999999999999999875421 11111    11123567999999999999999999


Q ss_pred             CeEEEEEcCCCc
Q 003271          788 ETLELWNMTENK  799 (835)
Q Consensus       788 g~I~IwDl~~~~  799 (835)
                      ..|.||......
T Consensus      1373 s~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1373 STVSIYSCEKPR 1384 (1387)
T ss_pred             ceEEEeecCCcC
Confidence            999999876543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=2.9e-13  Score=155.42  Aligned_cols=232  Identities=16%  Similarity=0.094  Sum_probs=167.1

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      ..|.+||..... ...+..+...+.+.+|+||++.|+.++.+   ..|++||+.++..  ..+..+.....++.|+|+|+
T Consensus       184 ~~l~i~D~~g~~-~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~--~~l~~~~g~~~~~~~SpDG~  260 (433)
T PRK04922        184 YALQVADSDGYN-PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQR--ELVASFRGINGAPSFSPDGR  260 (433)
T ss_pred             EEEEEECCCCCC-ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCE--EEeccCCCCccCceECCCCC
Confidence            468999986543 44555677789999999999999988753   4699999987653  33444455566889999999


Q ss_pred             cEEEEEeCCC--cEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEc-CC--cEEEEECCCCeEEEEEcCCCCCeE
Q 003271          654 DLLCSCDNNS--EIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVH  726 (835)
Q Consensus       654 ~ll~sgs~Dg--~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~I~  726 (835)
                      .++++.+.++  .|++||+.+++.......  .....+|+|++..+++++. ++  .|+++|+.++...... .+.....
T Consensus       261 ~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt-~~g~~~~  339 (433)
T PRK04922        261 RLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLT-FQGNYNA  339 (433)
T ss_pred             EEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEee-cCCCCcc
Confidence            8887776666  599999998875443322  2457899999999888774 34  4777788776543322 2334455


Q ss_pred             EEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEcCCCc
Q 003271          727 SVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENK  799 (835)
Q Consensus       727 sl~fspdg~~Lasgs-D-g--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl~~~~  799 (835)
                      .++|+|+|++|+..+ + +  .|.+||+.++.   .. .+. +......+.|+|+|++|+..+.+   ..|+++++..+.
T Consensus       340 ~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~---~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~  414 (433)
T PRK04922        340 RASVSPDGKKIAMVHGSGGQYRIAVMDLSTGS---VR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV  414 (433)
T ss_pred             CEEECCCCCEEEEEECCCCceeEEEEECCCCC---eE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence            789999999998775 3 2  69999997763   22 222 22234567999999998887764   378899997766


Q ss_pred             EEEeccCCCCeeEEEEeC
Q 003271          800 TLTLSAHDKLVSSLAAST  817 (835)
Q Consensus       800 ~~~l~~h~~~V~~la~sp  817 (835)
                      ...+..+.+.+...+|+|
T Consensus       415 ~~~l~~~~g~~~~p~wsp  432 (433)
T PRK04922        415 RQRLVSADGEVREPAWSP  432 (433)
T ss_pred             eEEcccCCCCCCCCccCC
Confidence            666666777788888886

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.58  E-value=9.3e-14  Score=151.55  Aligned_cols=243  Identities=15%  Similarity=0.181  Sum_probs=164.9

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE----EEEeccCCCCeEEEEE-----CCCCCEEEEEECCCeEEEEecC
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRF-----SPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~----i~~l~~h~~~V~sv~f-----spdg~~Latgs~Dg~I~IWDl~  627 (835)
                      .+....++-.|++|+..-. ..+++|+...+..    +....-.....+|-+|     .+++--|+.|-..|.|.+.|..
T Consensus       125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g~dllIGf~tGqvq~idp~  203 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKGLDLLIGFTTGQVQLIDPI  203 (636)
T ss_pred             ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCCcceEEeeccCceEEecch
Confidence            4555666667777765432 4688888764321    1111111122334444     2456678888888999998876


Q ss_pred             CCCcee---EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce--EEEEecCCCEEEEEEcCC
Q 003271          628 NPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT--QMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       628 t~~~~~---~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~--~l~fsp~~~~ll~~s~dg  702 (835)
                      ..+...   ....-....|+|+.|.|.++.+++..-.+|.+++||..-       ..+.+  +....+++..+.+...-+
T Consensus       204 ~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~-------~~~~t~p~~~~~k~~~~f~i~t~ks  276 (636)
T KOG2394|consen  204 NFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEI-------VCGATAPSYQALKDGDQFAILTSKS  276 (636)
T ss_pred             hhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccc-------cccCCCCcccccCCCCeeEEeeeec
Confidence            532211   111123478999999999888999999999999999831       11211  222233444443332211


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271          703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                      .      .+..++..+.--...|..++|+|||++|++.+ ||.++|||+.+.   +.+...+.--+...||+|+|||++|
T Consensus       277 k------~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---eLlg~mkSYFGGLLCvcWSPDGKyI  347 (636)
T KOG2394|consen  277 K------KTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---ELLGVMKSYFGGLLCVCWSPDGKYI  347 (636)
T ss_pred             c------ccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHH---HHHHHHHhhccceEEEEEcCCccEE
Confidence            1      11133333333455899999999999999999 999999999886   4454555556789999999999999


Q ss_pred             EEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEe
Q 003271          782 LVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS  816 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~s  816 (835)
                      ++|+.|.-|.||.+.+.+++ .-.+|.++|..++|.
T Consensus       348 vtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFD  383 (636)
T KOG2394|consen  348 VTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFD  383 (636)
T ss_pred             EecCCcceEEEEEeccceEEEeccccccceeeEeec
Confidence            99999999999999999998 667999999999998

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=3e-14  Score=152.25  Aligned_cols=192  Identities=22%  Similarity=0.242  Sum_probs=152.0

Q ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe--
Q 003271          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF--  636 (835)
Q Consensus       559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~--  636 (835)
                      .+++|+.+|..|++|+.||++|||+......+.....|...|.++.|+|||++|++.+.| ..+||++.++.. +...  
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~-~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAA-LARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCch-hhhcCC
Confidence            789999999999999999999999988888888888899999999999999999999999 899999998843 3222  


Q ss_pred             ecCCCCeEEEEEcCCC---Cc-EEEEEeCCCcEEEEECCCCee---ee---Ee--ecCceEEEEecCCCEEEEEEcCCcE
Q 003271          637 TGHSTTVMSLDFHPSK---ED-LLCSCDNNSEIRYWSINNGSC---AG---VF--KSGATQMRFQPRLGRILAAAIENYI  704 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g---~~-ll~sgs~Dg~I~iwDl~s~~~---~~---~~--~~~i~~l~fsp~~~~ll~~s~dg~I  704 (835)
                      ...+..+..+.|..++   .. +++.-...+.|+.||+...+.   .+   ..  ...+++++++.+|++++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence            2233445667777664   22 233334456677776643221   11   11  2358999999999999999999999


Q ss_pred             EEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 003271          705 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS  752 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t  752 (835)
                      .|++..+-+.+..++ .|...|+.+.|+|+.+++++.+ |..+.|..+.-
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999988777665 4999999999999999999987 88888887654

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.58  E-value=8.3e-13  Score=151.73  Aligned_cols=231  Identities=13%  Similarity=0.145  Sum_probs=167.6

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      ..|.+||.+.. ....+..|...+.+.+|+|||+.|+..+.   +..|++||+.++..  ..+..+...+.+.+|+|+|+
T Consensus       182 ~~l~~~d~dg~-~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  258 (435)
T PRK05137        182 KRLAIMDQDGA-NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQR--ELVGNFPGMTFAPRFSPDGR  258 (435)
T ss_pred             eEEEEECCCCC-CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcE--EEeecCCCcccCcEECCCCC
Confidence            47888998554 44556678889999999999999888764   46899999987653  44555667788999999999


Q ss_pred             cEEEEEeCCCc--EEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEEEEEcCCCCCeE
Q 003271          654 DLLCSCDNNSE--IRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVH  726 (835)
Q Consensus       654 ~ll~sgs~Dg~--I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~I~  726 (835)
                      .++++.+.++.  |++||+.++.......  .......|+|++..++..+..   ..|+++|+..+.... +..+...+.
T Consensus       259 ~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~-lt~~~~~~~  337 (435)
T PRK05137        259 KVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRR-ISFGGGRYS  337 (435)
T ss_pred             EEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEE-eecCCCccc
Confidence            88888776665  8888998876654333  225668999999998887743   368888987765543 333455667


Q ss_pred             EEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC------CeEEEEEcC
Q 003271          727 SVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMT  796 (835)
Q Consensus       727 sl~fspdg~~Lasgs-D---g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d------g~I~IwDl~  796 (835)
                      ...|+|+|++|+... +   ..|.+||+..+.    ...+.. ...+..+.|+|+|+.|+..+.+      ..|+++|+.
T Consensus       338 ~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~----~~~lt~-~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~  412 (435)
T PRK05137        338 TPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG----ERILTS-GFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLT  412 (435)
T ss_pred             CeEECCCCCEEEEEEcCCCceEEEEEECCCCc----eEeccC-CCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECC
Confidence            789999999998876 2   268888875542    222222 2346778999999998876653      268888988


Q ss_pred             CCcEEEeccCCCCeeEEEEeC
Q 003271          797 ENKTLTLSAHDKLVSSLAAST  817 (835)
Q Consensus       797 ~~~~~~l~~h~~~V~~la~sp  817 (835)
                      ++....+. ..+.+...+|+|
T Consensus       413 g~~~~~l~-~~~~~~~p~Wsp  432 (435)
T PRK05137        413 GRNEREVP-TPGDASDPAWSP  432 (435)
T ss_pred             CCceEEcc-CCCCccCcccCC
Confidence            77665544 355677788876

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.57  E-value=3.3e-12  Score=132.19  Aligned_cols=266  Identities=15%  Similarity=0.209  Sum_probs=177.8

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EECC------CeEEEEecCCC
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSAD------RTVRVWDTENP  629 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Lat-gs~D------g~I~IWDl~t~  629 (835)
                      ...+++|+.|...+++|..+| .+||+++..+.......+.+.+.-+..--..++|+. |+.+      ..|.|||-.. 
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD~k-   84 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDDLK-   84 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEeccc-
Confidence            355699999998998887654 899999876554333333333222222223345544 3332      4799999443 


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEeec-----CceEEEEecCCCEEEE-EEcCC
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFKS-----GATQMRFQPRLGRILA-AAIEN  702 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-s~~~~~~~~~-----~i~~l~fsp~~~~ll~-~s~dg  702 (835)
                      +.++..+. ...+|.+|.+.++  .+++.-  .+.|++|... +.+.++.+..     +..+++-......|+. |..-|
T Consensus        85 ~~~i~el~-f~~~I~~V~l~r~--riVvvl--~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~G  159 (346)
T KOG2111|consen   85 ERCIIELS-FNSEIKAVKLRRD--RIVVVL--ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTG  159 (346)
T ss_pred             CcEEEEEE-eccceeeEEEcCC--eEEEEe--cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccc
Confidence            33344444 5678999999976  344333  7899999987 4555555542     2223332222233333 23459


Q ss_pred             cEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCcceEEEeecC--CCceEEEEEeC
Q 003271          703 YISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHP  776 (835)
Q Consensus       703 ~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fsp  776 (835)
                      .|.|.|+...+.  ...+..|.+.|.|++.+-+|..||+++ .| .|||||..++   ..+.++...  ...|.+++|+|
T Consensus       160 qvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g---~~l~E~RRG~d~A~iy~iaFSp  236 (346)
T KOG2111|consen  160 QVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDG---TLLQELRRGVDRADIYCIAFSP  236 (346)
T ss_pred             eEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCC---cEeeeeecCCchheEEEEEeCC
Confidence            999999987655  467788999999999999999999999 66 7999999998   666666543  45799999999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCc---E-----------E-E----------eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          777 TFPSLLVIGCYETLELWNMTENK---T-----------L-T----------LSAHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~---~-----------~-~----------l~~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                      +..+|++++..|+|.||.++...   .           + +          +.-..+...-++|..+...++..+.||..
T Consensus       237 ~~s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy  316 (346)
T KOG2111|consen  237 NSSWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSY  316 (346)
T ss_pred             CccEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcE
Confidence            99999999999999999886522   1           0 0          11113344556676665566666777764


Q ss_pred             E
Q 003271          832 K  832 (835)
Q Consensus       832 ~  832 (835)
                      +
T Consensus       317 ~  317 (346)
T KOG2111|consen  317 Y  317 (346)
T ss_pred             E
Confidence            3

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.57  E-value=6.8e-13  Score=137.20  Aligned_cols=269  Identities=14%  Similarity=0.192  Sum_probs=199.8

Q ss_pred             CCEEEEEEeCCCCEEEE-EeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCE-EEEEECCCeEEEEecCCCCcee
Q 003271          556 SKVESCHFSPDGKLLAT-GGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Las-gs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~-Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      +.|.-+.|..|..++++ ...|+.|.+|++.-.+-...+......+.+++|+|||+. |.+...|-.|.||.+.+.+...
T Consensus        49 dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~  128 (447)
T KOG4497|consen   49 DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYL  128 (447)
T ss_pred             HHhhheeeeccceeeeeeeeccceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEE
Confidence            45778899988877655 467889999999988888889888899999999999965 5566779999999999866433


Q ss_pred             EEeecCCCCeEEEEEcCCCCcEEEEEeC-----------------------------------CCcEEEEECCCCeee--
Q 003271          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDN-----------------------------------NSEIRYWSINNGSCA--  676 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~-----------------------------------Dg~I~iwDl~s~~~~--  676 (835)
                      ....  +..+..++|+|+|....+..-.                                   +..+.+||.--.-.+  
T Consensus       129 ~~~p--K~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~a  206 (447)
T KOG4497|consen  129 LPHP--KTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYA  206 (447)
T ss_pred             eccc--ccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeee
Confidence            2222  3456888899998744332211                                   223445554322221  


Q ss_pred             eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE--------------------------------------
Q 003271          677 GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--------------------------------------  718 (835)
Q Consensus       677 ~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l--------------------------------------  718 (835)
                      .....++..+.|+|.+..+++|+.|+.++|.+--+.+....+                                      
T Consensus       207 Ye~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a  286 (447)
T KOG4497|consen  207 YERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEA  286 (447)
T ss_pred             eeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCcccc
Confidence            222356888999999999999999998887654322211100                                      


Q ss_pred             ----------------------c------CCCCCeEEEEEcCCCCEEEEEeCC---eEEEEEcCCCCCcceEEEeecCCC
Q 003271          719 ----------------------Q------GHKNQVHSVCWNTSGEYLASVSDE---LVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       719 ----------------------~------~h~~~I~sl~fspdg~~LasgsDg---~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                                            +      ...-.+.-++|++|..|+++-.|.   .+-+||+...    .++.+-....
T Consensus       287 ~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l----~l~avLiQk~  362 (447)
T KOG4497|consen  287 HIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNL----KLHAVLIQKH  362 (447)
T ss_pred             CccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhh----hhhhhhhhcc
Confidence                                  0      011235568999999999998754   8999999875    3334444577


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271          768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC  830 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~  830 (835)
                      +|....|+|..+.|+++.....+++|......++......-.|..+.|.-+|..++.++.|..
T Consensus       363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~vP~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGVPKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEecCCCCceeeeEEecCCCcEEEEEcCCce
Confidence            899999999999999999999999999988888877777789999999999999999998864

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.57  E-value=1.7e-13  Score=141.68  Aligned_cols=271  Identities=15%  Similarity=0.224  Sum_probs=193.5

Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCCeEEEEecCCCCceeEEeec
Q 003271          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      -++|||+|+++|+++.- .+.|-|.++.+....+.. -+.|.-|.|..|..+++ ....|+.|.+|++...+. ...+..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf~c-ldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-~ckIde   89 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLFLC-LDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-YCKIDE   89 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHHHH-HHHhhheeeeccceeeeeeeeccceEEEEEeeccee-EEEecc
Confidence            37899999999999854 888888888766544432 35677888988876655 456688999999998776 455566


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--EeecCceEEEEecCCCEEEEEEcCC--------------
Q 003271          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFKSGATQMRFQPRLGRILAAAIEN--------------  702 (835)
Q Consensus       639 h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~~~i~~l~fsp~~~~ll~~s~dg--------------  702 (835)
                      ....+.+++|+|+|++++.+...+-.|.+|.+.+.+...  --+..+..++|+++|.+.+.++.-.              
T Consensus        90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~  169 (447)
T KOG4497|consen   90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWI  169 (447)
T ss_pred             CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHH
Confidence            678899999999999999999999999999998876643  2345577788888887766654321              


Q ss_pred             ----------------------cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----
Q 003271          703 ----------------------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----  755 (835)
Q Consensus       703 ----------------------~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~----  755 (835)
                                            .+.+||.--.-.+..+. -.-.+..+.|+|.+++|+.|+ |+.++|.+--+-+.    
T Consensus       170 ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe-~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~ef  248 (447)
T KOG4497|consen  170 LLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE-RGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEF  248 (447)
T ss_pred             HHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee-eccceeEEEeccccceEEeeccchhhhhhceeeeeehhhh
Confidence                                  13333322111111121 235688899999999999999 98888865321100    


Q ss_pred             -------------------------------------------c----------ceEEEee------cCCCceEEEEEeC
Q 003271          756 -------------------------------------------G----------ECIHELS------CTGNKFHSCVFHP  776 (835)
Q Consensus       756 -------------------------------------------~----------~~i~~l~------~~~~~V~sv~fsp  776 (835)
                                                                 .          ..++.++      ...-.+..++|++
T Consensus       249 lhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~  328 (447)
T KOG4497|consen  249 LHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSC  328 (447)
T ss_pred             ccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecC
Confidence                                                       0          0000111      1123456789999


Q ss_pred             CCCEEEEEEcC--CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          777 TFPSLLVIGCY--ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       777 dg~~L~sgs~d--g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      |..++++-.+.  +.+.+||+...++..+.....+|....|+|....|+.+....++++|
T Consensus       329 Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~piraf~WdP~~prL~vctg~srLY~W  388 (447)
T KOG4497|consen  329 DSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFW  388 (447)
T ss_pred             CceEEeeecCCCCceEEEEechhhhhhhhhhhccceeEEEeCCCCceEEEEcCCceEEEE
Confidence            99877776554  48999999998887666667789999999988888888777788888

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.57  E-value=4.5e-11  Score=133.14  Aligned_cols=260  Identities=12%  Similarity=0.138  Sum_probs=180.9

Q ss_pred             CCEEEEEEeCCCCEEEEEeC----CCeEEEEEcCCC--e--EEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEec
Q 003271          556 SKVESCHFSPDGKLLATGGH----DKKAVLWCTESF--T--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDT  626 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~----Dg~I~VWd~~t~--~--~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl  626 (835)
                      .....++++|++++|+++..    ++.|..|++...  +  .+............++++|++++|+++.. +|.|.++++
T Consensus        37 ~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l  116 (345)
T PF10282_consen   37 ENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL  116 (345)
T ss_dssp             SSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred             CCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence            34667899999999999876    578999987653  3  33444434455678999999999999986 899999999


Q ss_pred             CCCCceeEE--ee-----------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eee--Eee----cCceE
Q 003271          627 ENPDYSLRT--FT-----------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAG--VFK----SGATQ  685 (835)
Q Consensus       627 ~t~~~~~~~--~~-----------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~--~~~--~~~----~~i~~  685 (835)
                      .........  ..           .......++.|+|+++.++++.-....|++|++....  ...  .+.    .+...
T Consensus       117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh  196 (345)
T PF10282_consen  117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH  196 (345)
T ss_dssp             CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred             cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence            875322221  11           1235578999999999888777667789999997654  322  222    34788


Q ss_pred             EEEecCCCEEEEEEc-CCcEEEEECC--CCe--EEEEEcC------CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003271          686 MRFQPRLGRILAAAI-ENYISILDVE--TQV--CRLKLQG------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS  752 (835)
Q Consensus       686 l~fsp~~~~ll~~s~-dg~I~IwDl~--t~~--~i~~l~~------h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t  752 (835)
                      ++|+|+++++++... ++.|.+|++.  ++.  .+..+..      .......|+++|||++|+++.  ++.|.+|++..
T Consensus       197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~  276 (345)
T PF10282_consen  197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP  276 (345)
T ss_dssp             EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred             EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence            999999999888776 5789999888  442  2222221      122578899999999999887  77999999943


Q ss_pred             -CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEc--CCCcEEEec--cCCCCeeEEEE
Q 003271          753 -GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNM--TENKTLTLS--AHDKLVSSLAA  815 (835)
Q Consensus       753 -~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl--~~~~~~~l~--~h~~~V~~la~  815 (835)
                       ......+..+...+.....++++|+|++|+++..+ +.|.+|++  .++.+....  ..-....||.|
T Consensus       277 ~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  277 ATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             TTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             CCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence             23345666666666778999999999999998865 58888876  566655322  23345566665

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.56  E-value=2e-13  Score=150.60  Aligned_cols=235  Identities=15%  Similarity=0.237  Sum_probs=168.5

Q ss_pred             eCCCCEEEE--EeCCCeEEEEEcCC-CeEE----EEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCCc----
Q 003271          564 SPDGKLLAT--GGHDKKAVLWCTES-FTVK----STLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDY----  631 (835)
Q Consensus       564 Spdg~~Las--gs~Dg~I~VWd~~t-~~~i----~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~----  631 (835)
                      +.+.+++|+  .+..|.|-||++.. |++-    -.+ .....|+++.|.| |...|++++.||.|++|.+..+..    
T Consensus       588 can~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l-~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~  666 (1012)
T KOG1445|consen  588 CANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGL-FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENE  666 (1012)
T ss_pred             eeccceEEEEecCCCceEEEEEcCCCCCCCccccccc-ccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCccc
Confidence            334555554  45578999999864 2221    122 1345799999999 678999999999999999976542    


Q ss_pred             --eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEE
Q 003271          632 --SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       632 --~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                        +...+..|...|+++.|+|-...++++++.|-+|++||+.+.+....+.+   .|..++|+|+|..+++.+.||.|++
T Consensus       667 ~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rV  746 (1012)
T KOG1445|consen  667 MTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRV  746 (1012)
T ss_pred             CCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEE
Confidence              34678899999999999998888999999999999999999887766654   4999999999999999999999999


Q ss_pred             EECCCCe-EEEEEcCC-CCCeEEEEEcCCCCEEEEEe-CC----eEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCC
Q 003271          707 LDVETQV-CRLKLQGH-KNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTF  778 (835)
Q Consensus       707 wDl~t~~-~i~~l~~h-~~~I~sl~fspdg~~Lasgs-Dg----~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg  778 (835)
                      |..++.+ .++.-.+. ...--.|.|.-+|+++++.+ |.    .|.+||..+-.. ..+.+... ....+.--.+.+|.
T Consensus       747 y~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~-~pl~t~~lDvaps~LvP~YD~Ds  825 (1012)
T KOG1445|consen  747 YEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDL-RPLYTQVLDVAPSPLVPHYDYDS  825 (1012)
T ss_pred             eCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccC-CcceeeeecccCccccccccCCC
Confidence            9998764 34333321 12334678888999988876 54    788998766431 12222111 11112222455565


Q ss_pred             CEE-EEEEcCCeEEEEEcCCCcE
Q 003271          779 PSL-LVIGCYETLELWNMTENKT  800 (835)
Q Consensus       779 ~~L-~sgs~dg~I~IwDl~~~~~  800 (835)
                      ..| ++|-.|..|++|.+-....
T Consensus       826 ~~lfltGKGD~~v~~yEv~~esP  848 (1012)
T KOG1445|consen  826 NVLFLTGKGDRFVNMYEVIYESP  848 (1012)
T ss_pred             ceEEEecCCCceEEEEEecCCCc
Confidence            544 4555677999999865543

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.56  E-value=5.5e-13  Score=141.58  Aligned_cols=290  Identities=13%  Similarity=0.119  Sum_probs=188.9

Q ss_pred             EecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC
Q 003271          487 FGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD  566 (835)
Q Consensus       487 ~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd  566 (835)
                      .+.-+.+..++....+.+...++++|+.++.+-+|...+....   ..+.........+...+.+.+|...|+.++|++|
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~---~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d  134 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIF---DADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPD  134 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCc---cccchhhhCccceEEEEEecccccchhhhhccCC
Confidence            3333445566666777777789999999999999955542111   0011111123446778889999999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCC-eEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT-VMS  645 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~-V~s  645 (835)
                      +.++++++.|..+++||+..|.....+.+|...|..++|.|-+.++++-+.|...+++.+.....    ...|... ...
T Consensus       135 ~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~----~~~~~~~~m~~  210 (434)
T KOG1009|consen  135 SNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQV----IKRHGLDIMPA  210 (434)
T ss_pred             CceeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeee----eeeeeeeEeee
Confidence            99999999999999999999999999999999999999999999999999998777777654331    1111100 001


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc----C-----CcEEEEECCC-CeEE
Q 003271          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI----E-----NYISILDVET-QVCR  715 (835)
Q Consensus       646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~----d-----g~I~IwDl~t-~~~i  715 (835)
                      ..+.+.         .....++|.=++.      +.-...++|+|+|..+++.+.    +     +..++|+-.. .++.
T Consensus       211 ~~~~~~---------e~~s~rLfhDeTl------ksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~  275 (434)
T KOG1009|consen  211 KAFNER---------EGKSTRLFHDETL------KSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPA  275 (434)
T ss_pred             cccCCC---------CcceeeeeecCch------hhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCce
Confidence            111110         1112222222211      122445667777766665432    1     2234444332 2333


Q ss_pred             EEEcCCCCCeEEEEEcC------------------CCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          716 LKLQGHKNQVHSVCWNT------------------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fsp------------------dg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                      ..+.....++..+.|+|                  .+..++.++.+.|+|||..+.....+  .-..|...++.++|+++
T Consensus       276 ~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~--v~nihy~~iTDiaws~d  353 (434)
T KOG1009|consen  276 ARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAV--VDNIHYSAITDIAWSDD  353 (434)
T ss_pred             eecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEeecceEEEeccccccceEE--EeeeeeeeecceeecCC
Confidence            44444444444444433                  34456666788999999988643223  33457889999999999


Q ss_pred             CCEEEEEEcCCeEEEEEcCCCcE
Q 003271          778 FPSLLVIGCYETLELWNMTENKT  800 (835)
Q Consensus       778 g~~L~sgs~dg~I~IwDl~~~~~  800 (835)
                      |.+|++.+.||...+..++..++
T Consensus       354 g~~l~vSS~DGyCS~vtfe~~el  376 (434)
T KOG1009|consen  354 GSVLLVSSTDGFCSLVTFEPWEL  376 (434)
T ss_pred             CcEEEEeccCCceEEEEEcchhc
Confidence            99999999999777666655543

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.56  E-value=3e-13  Score=143.10  Aligned_cols=259  Identities=15%  Similarity=0.210  Sum_probs=199.1

Q ss_pred             CCCCEEEEEEeCCCC--EEEEEeCCCeEEEEEcCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          554 STSKVESCHFSPDGK--LLATGGHDKKAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       554 H~~~V~sl~fSpdg~--~Lasgs~Dg~I~VWd~~t~~~i~~l------~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ....|++++|.-|++  .|...+.|..+..+++....+...+      ......|..++..  ...|++|-.+|.+.+|.
T Consensus        54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--dg~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--DGTLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--CCEEEEEecCCcEEEEe
Confidence            345688888877665  3444446777777777766554332      3455667766664  33788889999999999


Q ss_pred             cCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeEee------------cCceEEEE
Q 003271          626 TENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGVFK------------SGATQMRF  688 (835)
Q Consensus       626 l~t~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D--g~I~iwDl~s~~~~~~~~------------~~i~~l~f  688 (835)
                      +..+..   .+..+..+ ..+..+.-++...+++++|+..  ..+.+||++..+.+..-+            .-++.+.|
T Consensus       132 ~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F  210 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF  210 (412)
T ss_pred             ccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence            985441   12333323 5677788888888899999998  899999999886554332            22667888


Q ss_pred             ecC--CCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE-ee
Q 003271          689 QPR--LGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE-LS  763 (835)
Q Consensus       689 sp~--~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~-l~  763 (835)
                      -+.  ...|++++.-+.|++||.+.+ +++..|.-...+|+++...|++++|+++. -+.+..||++.+   +.+.. +.
T Consensus       211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~---kl~g~~~k  287 (412)
T KOG3881|consen  211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGG---KLLGCGLK  287 (412)
T ss_pred             cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCc---eeeccccC
Confidence            887  788999999999999999976 67778877889999999999999999999 899999999998   44433 77


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCC
Q 003271          764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV  818 (835)
Q Consensus       764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spd  818 (835)
                      +..+.|.++..+|.+++|++++-|..|+|+|+.+.+++........+++|-+.++
T Consensus       288 g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  288 GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             CccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            7889999999999999999999999999999999777644444556777776543

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.55  E-value=6.8e-14  Score=152.12  Aligned_cols=205  Identities=14%  Similarity=0.143  Sum_probs=162.7

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEE
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~  647 (835)
                      ..|+.++.||.+.|.+ +.++....+..|.+.|.|-.|+|||.-|+|+++||.|++|.-..  ....++.....+|.|++
T Consensus        76 d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsG--MLRStl~Q~~~~v~c~~  152 (737)
T KOG1524|consen   76 DTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSG--MLRSTVVQNEESIRCAR  152 (737)
T ss_pred             ceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccc--hHHHHHhhcCceeEEEE
Confidence            4678888899999987 46778888999999999999999999999999999999998653  22344555667899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC
Q 003271          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ  724 (835)
Q Consensus       648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~  724 (835)
                      |.|+.+.++++.+  +.+.|=.+.....+...+   +-+.++.|++..+.+++|+.|-..+|||.. |..+..-..|..+
T Consensus       153 W~p~S~~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey~  229 (737)
T KOG1524|consen  153 WAPNSNSIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEYA  229 (737)
T ss_pred             ECCCCCceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc-CcccccCChhccc
Confidence            9999988887664  456555555444443333   348899999999999999999999999986 5666666779999


Q ss_pred             eEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          725 VHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       725 I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      |++++|.|+ +.++.++-+++++=.              ...+.|..++|++||..+++|+..|.|.+=
T Consensus       230 ITSva~npd-~~~~v~S~nt~R~~~--------------p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  230 ITSVAFNPE-KDYLLWSYNTARFSS--------------PRVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             eeeeeeccc-cceeeeeeeeeeecC--------------CCccceEEEEEcCCCceeeccccCceEEEe
Confidence            999999999 666667666666222              134678899999999999999999865543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.3e-12  Score=149.57  Aligned_cols=233  Identities=14%  Similarity=0.057  Sum_probs=158.4

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      ..|.+||.+ +.....+..+...+.+.+|+|||+.|+..+.+   ..|++||+.++..  ..+......+.+..|+|+|+
T Consensus       176 ~~L~~~D~d-G~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~--~~l~~~~g~~~~~~~SPDG~  252 (427)
T PRK02889        176 YQLQISDAD-GQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRR--RVVANFKGSNSAPAWSPDGR  252 (427)
T ss_pred             cEEEEECCC-CCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            467777774 34444555677889999999999999887753   3599999987753  33343445667899999999


Q ss_pred             cEEEEEeCCCcEEEE--ECCCCeeeeEee--cCceEEEEecCCCEEEEEEc-CCcEEEE--ECCCCeEEEEEcCCCCCeE
Q 003271          654 DLLCSCDNNSEIRYW--SINNGSCAGVFK--SGATQMRFQPRLGRILAAAI-ENYISIL--DVETQVCRLKLQGHKNQVH  726 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iw--Dl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~Iw--Dl~t~~~i~~l~~h~~~I~  726 (835)
                      .++++.+.++...+|  |+..+.......  .......|+|++..++..+. ++...||  ++.++...... .+.....
T Consensus       253 ~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt-~~g~~~~  331 (427)
T PRK02889        253 TLAVALSRDGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVT-FTGSYNT  331 (427)
T ss_pred             EEEEEEccCCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEe-cCCCCcC
Confidence            888888878875555  455444322221  23566789999999887664 3444444  55555433222 2233345


Q ss_pred             EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCc
Q 003271          727 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK  799 (835)
Q Consensus       727 sl~fspdg~~Lasgs-Dg---~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~  799 (835)
                      ...|+|||++|+..+ ++   .|++||+.++..    ..+.. ......+.|+|+++.|+.++.++   .+++.++....
T Consensus       332 ~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~----~~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~g~~  406 (427)
T PRK02889        332 SPRISPDGKLLAYISRVGGAFKLYVQDLATGQV----TALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSDGRI  406 (427)
T ss_pred             ceEECCCCCEEEEEEccCCcEEEEEEECCCCCe----EEccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECCCCc
Confidence            678999999998776 33   699999987632    22222 22346789999999998888665   57777875544


Q ss_pred             EEEeccCCCCeeEEEEeCC
Q 003271          800 TLTLSAHDKLVSSLAASTV  818 (835)
Q Consensus       800 ~~~l~~h~~~V~~la~spd  818 (835)
                      ...+..+.+.+...+|+|-
T Consensus       407 ~~~l~~~~g~~~~p~wsp~  425 (427)
T PRK02889        407 KQRLSVQGGDVREPSWGPF  425 (427)
T ss_pred             eEEeecCCCCCCCCccCCC
Confidence            4456667788888899873

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=5.8e-12  Score=144.30  Aligned_cols=203  Identities=14%  Similarity=0.163  Sum_probs=147.5

Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeee--eEeecCceEEEEecCCCEE
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCA--GVFKSGATQMRFQPRLGRI  695 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs--~Dg~I~iwDl~s~~~~--~~~~~~i~~l~fsp~~~~l  695 (835)
                      .|.+||.+...  .+.+..+...+.+.+|+|+|+.++++..  .+..|++||+.+++..  ..+......+.|+|++..|
T Consensus       180 ~l~~~d~dg~~--~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG~~L  257 (429)
T PRK03629        180 ELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKL  257 (429)
T ss_pred             eEEEEcCCCCC--CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCCCEE
Confidence            68899988544  3445556778999999999987776543  2457999999887543  3445556788999999988


Q ss_pred             EEEEc-CC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCc
Q 003271          696 LAAAI-EN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNK  768 (835)
Q Consensus       696 l~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~  768 (835)
                      +.... ++  .|++||+.+++.... ..+...+....|+|||+.|+..+  ++  .|+++|+.++.    ...+......
T Consensus       258 a~~~~~~g~~~I~~~d~~tg~~~~l-t~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~----~~~lt~~~~~  332 (429)
T PRK03629        258 AFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA----PQRITWEGSQ  332 (429)
T ss_pred             EEEEcCCCCcEEEEEECCCCCEEEc-cCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC----eEEeecCCCC
Confidence            87643 44  599999998866544 33455678899999999988777  33  45555666542    2233334445


Q ss_pred             eEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271          769 FHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC  830 (835)
Q Consensus       769 V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~  830 (835)
                      .....|+|+|++|+..+.++   .|++||+.++....+... .......|+|||++|+.++.|+.
T Consensus       333 ~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~-~~~~~p~~SpDG~~i~~~s~~~~  396 (429)
T PRK03629        333 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDT-FLDETPSIAPNGTMVIYSSSQGM  396 (429)
T ss_pred             ccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCC-CCCCCceECCCCCEEEEEEcCCC
Confidence            66789999999998876543   689999998887655432 23457889999999999988765

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.53  E-value=9.4e-13  Score=136.16  Aligned_cols=223  Identities=18%  Similarity=0.266  Sum_probs=174.6

Q ss_pred             cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-
Q 003271          595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-  671 (835)
Q Consensus       595 ~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-  671 (835)
                      ....+|+|.+|++|...+|++.....|.||......  ...+++..|...|++|+|.|..+. |++|+.|..-++|... 
T Consensus         8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snr-Ivtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNR-IVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCc-eeEccCCCCccccccCC
Confidence            345789999999999999999999999999988765  356889999999999999999764 5699999999999994 


Q ss_pred             CCee-----eeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEE----EEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          672 NGSC-----AGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LKLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       672 s~~~-----~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i----~~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                      .++-     +..+....+++.|+|.++.|++++....|.||-.+....-    +.-+.+.+.|.++.|+|++-+|++|+ 
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~  166 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGST  166 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccccc
Confidence            3332     3445677999999999999999999999999887754321    22334678899999999999999999 


Q ss_pred             CCeEEEEEcCC-----CC----------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--EEEec
Q 003271          742 DELVRVWSIGS-----GS----------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLTLS  804 (835)
Q Consensus       742 Dg~I~IwDl~t-----~~----------~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--~~~l~  804 (835)
                      |+..+||..--     ..          .+..+.++....+.+..+.|+|+|..|+-.+.|+.|.+-|.....  +....
T Consensus       167 D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~  246 (361)
T KOG1523|consen  167 DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVA  246 (361)
T ss_pred             CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchh
Confidence            99999987421     10          112334454667889999999999999999999999999987764  22333


Q ss_pred             cCCCCeeEEEEeCC
Q 003271          805 AHDKLVSSLAASTV  818 (835)
Q Consensus       805 ~h~~~V~~la~spd  818 (835)
                      ...-+..++.|-.+
T Consensus       247 ~~~lP~ls~~~ise  260 (361)
T KOG1523|consen  247 TAQLPLLSVSWISE  260 (361)
T ss_pred             hccCCceeeEeecC
Confidence            22355666666543

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.53  E-value=6.3e-11  Score=131.93  Aligned_cols=265  Identities=14%  Similarity=0.181  Sum_probs=182.1

Q ss_pred             EEEEeCC----CeEEEEEc--CCCeEE--EEeccCCCCeEEEEECCCCCEEEEEEC----CCeEEEEecCCC--Cc-eeE
Q 003271          570 LATGGHD----KKAVLWCT--ESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA----DRTVRVWDTENP--DY-SLR  634 (835)
Q Consensus       570 Lasgs~D----g~I~VWd~--~t~~~i--~~l~~h~~~V~sv~fspdg~~Latgs~----Dg~I~IWDl~t~--~~-~~~  634 (835)
                      +++|+.+    +.|++|++  +++++.  ..+ ........++++|++++|+++..    ++.|..|++...  .. .+.
T Consensus         2 ~~vgsy~~~~~~gI~~~~~d~~~g~l~~~~~~-~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~   80 (345)
T PF10282_consen    2 LYVGSYTNGKGGGIYVFRFDEETGTLTLVQTV-AEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLN   80 (345)
T ss_dssp             EEEEECCSSSSTEEEEEEEETTTTEEEEEEEE-EESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCCCCcEEEEEEcCCCCCceEeeee-cCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEee
Confidence            4556655    68998887  455543  222 23345677899999999999987    479999998875  22 122


Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE---e-------------ecCceEEEEecCCCEEEE
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---F-------------KSGATQMRFQPRLGRILA  697 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~---~-------------~~~i~~l~fsp~~~~ll~  697 (835)
                      ...........++++|+++.++++...+|.|.++++.. +.....   +             ..+..++.++|+++++++
T Consensus        81 ~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v  160 (345)
T PF10282_consen   81 SVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYV  160 (345)
T ss_dssp             EEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEE
T ss_pred             eeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEE
Confidence            23324456678999999998888888899999999987 443322   1             133678999999999998


Q ss_pred             EEcC-CcEEEEECCCCe--E--EEEEc-CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CcceEEEeecC---
Q 003271          698 AAIE-NYISILDVETQV--C--RLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCT---  765 (835)
Q Consensus       698 ~s~d-g~I~IwDl~t~~--~--i~~l~-~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~-~~~~i~~l~~~---  765 (835)
                      .... ..|.+|++....  .  ...+. ......+.++|+|+++++++..  ++.|.+|++.... ....+..+...   
T Consensus       161 ~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~  240 (345)
T PF10282_consen  161 PDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEG  240 (345)
T ss_dssp             EETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETT
T ss_pred             EecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecccc
Confidence            8764 689999997654  2  12222 3556788999999999998887  8899999998321 22233333221   


Q ss_pred             ---CCceEEEEEeCCCCEEEEEEcC-CeEEEEEcC--CCcEE---EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271          766 ---GNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  835 (835)
Q Consensus       766 ---~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~--~~~~~---~l~~h~~~V~~la~spdg~~LaSgs-~DG~V~IWd  835 (835)
                         ......++++|++++|+++... +.|.+|+++  ++++.   .+.......+.++++|+|++|++++ .++.|.+|+
T Consensus       241 ~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~  320 (345)
T PF10282_consen  241 FTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFD  320 (345)
T ss_dssp             SCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEE
T ss_pred             ccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEE
Confidence               1257889999999999988764 589999993  34443   2333345589999999999988887 566788874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=7.9e-13  Score=141.46  Aligned_cols=189  Identities=14%  Similarity=0.102  Sum_probs=147.0

Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC
Q 003271          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG  720 (835)
Q Consensus       644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~---~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~  720 (835)
                      .+++|+.+|. .+++++.||++|+|+..+...+..   ....|.++.|+|++..|++.+.| ..+||+++++.++.....
T Consensus       148 k~vaf~~~gs-~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGS-KLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCC-EeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            6788998866 788999999999999766554433   33669999999999999999999 999999999977665552


Q ss_pred             --CCCCeEEEEEcCCC---CEEEEEe---CCeEEEEEcCCCCCcc--eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003271          721 --HKNQVHSVCWNTSG---EYLASVS---DELVRVWSIGSGSKGE--CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL  790 (835)
Q Consensus       721 --h~~~I~sl~fspdg---~~Lasgs---Dg~I~IwDl~t~~~~~--~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I  790 (835)
                        ....+..+.|+.|+   .++++..   .+.|+.||+.......  ...........|.+++.+++|++++.|+.||.|
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV  305 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV  305 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence              33456677888776   4444333   4577787776543211  222223345679999999999999999999999


Q ss_pred             EEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          791 ELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       791 ~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .|++..+.+++  ....|...|+.+.|+||.+++++.+.|..+.|.
T Consensus       306 ai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~  351 (398)
T KOG0771|consen  306 AIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT  351 (398)
T ss_pred             EEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence            99999998887  445899999999999999999998888876653

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=4.1e-12  Score=140.01  Aligned_cols=268  Identities=18%  Similarity=0.294  Sum_probs=182.6

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-----ECC-----CeEEEEe
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-----SAD-----RTVRVWD  625 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-----s~D-----g~I~IWD  625 (835)
                      .++..++++++|+++|.+. +..|+|++..+.+.+.+...-  .++++.|+|.+.+|.|=     ..+     -.+.+|+
T Consensus        35 ~~~~v~~~S~~G~lfA~~~-~~~v~i~~~~~~~~~lt~~~~--~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~pn~~v~~  111 (566)
T KOG2315|consen   35 RPCNVFAYSNNGRLFAYSD-NQVVKVFEIATLKVVLCVELK--KTYDLLFSPKGNYLLTWEPWAIYGPKNASNPNVLVYN  111 (566)
T ss_pred             CcceeEEEcCCCcEEEEEc-CCeEEEEEccCCcEEEEeccc--eeeeeeecccccccccccccccccCCCCCCCceeeee
Confidence            3477889999999888775 578999999888655444333  78999999999998762     112     3477999


Q ss_pred             cCCCCceeEEe----------------------------------------ecCCCCeEEEEEcCCCC-cEEEE-----E
Q 003271          626 TENPDYSLRTF----------------------------------------TGHSTTVMSLDFHPSKE-DLLCS-----C  659 (835)
Q Consensus       626 l~t~~~~~~~~----------------------------------------~~h~~~V~sl~fsp~g~-~ll~s-----g  659 (835)
                      ++++. ....+                                        .-|...|..+.++|... ..+++     .
T Consensus       112 vet~~-~~s~~q~k~Q~~W~~qfs~dEsl~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k  190 (566)
T KOG2315|consen  112 VETGV-QRSQIQKKMQNGWVPQFSIDESLAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK  190 (566)
T ss_pred             eccce-ehhheehhhhcCcccccccchhhhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence            88732 11111                                        11344566666666522 22222     2


Q ss_pred             eCCCcEEEEECCCCee------eeEeecCceEEEEecCCCEEEE-EEc--C---------CcEEEEECCCCeEEEEEcCC
Q 003271          660 DNNSEIRYWSINNGSC------AGVFKSGATQMRFQPRLGRILA-AAI--E---------NYISILDVETQVCRLKLQGH  721 (835)
Q Consensus       660 s~Dg~I~iwDl~s~~~------~~~~~~~i~~l~fsp~~~~ll~-~s~--d---------g~I~IwDl~t~~~i~~l~~h  721 (835)
                      +.-+.|+||.......      ..-|+..-..+.|++.+.-|++ ++.  |         ..++++++....++..+. .
T Consensus       191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k  269 (566)
T KOG2315|consen  191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-K  269 (566)
T ss_pred             CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-C
Confidence            3344677776652211      1123344556677777655443 222  2         358888888556666555 5


Q ss_pred             CCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEc
Q 003271          722 KNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNM  795 (835)
Q Consensus       722 ~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl  795 (835)
                      .++|++++|+++++-++++.   -..+.|||++..    .+..  ...++-+++-|+|.|++|+.+|.+   |.|.|||+
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~----~v~d--f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv  343 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK----PVFD--FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDV  343 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCCCC----EeEe--CCCCCccceEECCCCCEEEEeecCCCCCceEEEec
Confidence            78999999999998777765   669999998653    4444  346778899999999999999886   59999999


Q ss_pred             CCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC------CCcEEEeC
Q 003271          796 TENKTLTLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK  835 (835)
Q Consensus       796 ~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~------DG~V~IWd  835 (835)
                      .+.+++......+ -+-+.|+|||.+|+|++.      |+.++||+
T Consensus       344 ~n~K~i~~~~a~~-tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwh  388 (566)
T KOG2315|consen  344 PNRKLIAKFKAAN-TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWH  388 (566)
T ss_pred             cchhhccccccCC-ceEEEEcCCCcEEEEEeccccEEecCCeEEEE
Confidence            9988774433332 345789999999998874      78899995

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.51  E-value=4.3e-12  Score=145.37  Aligned_cols=220  Identities=17%  Similarity=0.184  Sum_probs=150.8

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCCeEEEEec
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDT  626 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg~I~IWDl  626 (835)
                      +..+...|.+.+|+|||+.|+..+.+   ..|++||+.+++... +....+.+.+.+|+|||+.|+ +.+.++...||.+
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEEE
Confidence            34667789999999999999887643   359999999887643 333445667899999998876 5677887777765


Q ss_pred             CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEe-ec-CceEEEEecCCCEEEEEEcCC
Q 003271          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVF-KS-GATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl--~s~~~~~~~-~~-~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      +........+..+...+....|+|+|+.+++++..++...+|.+  .+++..... .+ ......|+|+|++++..+.++
T Consensus       270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence            43222245555566666778999999988877665666666654  444433222 22 244678999999998877654


Q ss_pred             ---cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271          703 ---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  775 (835)
Q Consensus       703 ---~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs  775 (835)
                         .|++||+.+++......  ......+.|+|||++|+..+  .+  .+++.++. +   .....+..+.+.+...+|+
T Consensus       350 g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g---~~~~~l~~~~g~~~~p~ws  423 (427)
T PRK02889        350 GAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-G---RIKQRLSVQGGDVREPSWG  423 (427)
T ss_pred             CcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-C---CceEEeecCCCCCCCCccC
Confidence               59999998876543332  23446789999999988877  33  46666663 3   3344444455667777887


Q ss_pred             CC
Q 003271          776 PT  777 (835)
Q Consensus       776 pd  777 (835)
                      |-
T Consensus       424 p~  425 (427)
T PRK02889        424 PF  425 (427)
T ss_pred             CC
Confidence            64

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.50  E-value=6.5e-12  Score=130.02  Aligned_cols=229  Identities=13%  Similarity=0.178  Sum_probs=166.1

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECC
Q 003271          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSIN  671 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~  671 (835)
                      ...+++|+.|...+++|..+| .+||+++.-+... +.+....-.+..+-|-  .+.+.+.|+.+      ..|.|||=.
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEecc
Confidence            345699999999999998777 8999988533211 1111111222233232  23455555543      479999977


Q ss_pred             CCeeeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECC-CCeEEEEEcC--CCCCeEEEEEcCCCCEEEEEe--CCe
Q 003271          672 NGSCAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS--DEL  744 (835)
Q Consensus       672 s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~--h~~~I~sl~fspdg~~Lasgs--Dg~  744 (835)
                      ..+++.++  ..+|..+.+.++   .++.-.++.|+||... +.+.++.+..  ....+.+++-..+..+|+.-+  -|.
T Consensus        84 k~~~i~el~f~~~I~~V~l~r~---riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~Gq  160 (346)
T KOG2111|consen   84 KERCIIELSFNSEIKAVKLRRD---RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQ  160 (346)
T ss_pred             cCcEEEEEEeccceeeEEEcCC---eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccce
Confidence            77777655  477889988876   4455567899999987 4455555443  234455565555666777766  789


Q ss_pred             EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEE-Eec--cCCCCeeEEEEeCCCC
Q 003271          745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLS--AHDKLVSSLAASTVNG  820 (835)
Q Consensus       745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~--~h~~~V~~la~spdg~  820 (835)
                      |.|-|+...... .-..+..|...|.+++++-+|..|++++..| -|+|||..+++.+ .+.  .....|.+|+|||+..
T Consensus       161 vQi~dL~~~~~~-~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s  239 (346)
T KOG2111|consen  161 VQIVDLASTKPN-APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSS  239 (346)
T ss_pred             EEEEEhhhcCcC-CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCcc
Confidence            999999876321 3466788999999999999999999999999 6899999999987 333  2346799999999999


Q ss_pred             EEEEEECCCcEEEe
Q 003271          821 MVASASHDKCVKIW  834 (835)
Q Consensus       821 ~LaSgs~DG~V~IW  834 (835)
                      +||++|+-|+|+||
T Consensus       240 ~LavsSdKgTlHiF  253 (346)
T KOG2111|consen  240 WLAVSSDKGTLHIF  253 (346)
T ss_pred             EEEEEcCCCeEEEE
Confidence            99999999999997

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.4e-12  Score=146.58  Aligned_cols=218  Identities=19%  Similarity=0.191  Sum_probs=153.7

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCC--eEEE
Q 003271          550 LIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADR--TVRV  623 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg--~I~I  623 (835)
                      .+..|...|.+.+|+|||+.|+.++.+   ..|++||+.+++... +..+.+...+++|+|||+.|+ +.+.+|  .|++
T Consensus       198 ~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~  276 (433)
T PRK04922        198 TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYV  276 (433)
T ss_pred             EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCCCccCceECCCCCEEEEEEeCCCCceEEE
Confidence            344677789999999999999887643   469999998876543 333445566889999998775 445555  5999


Q ss_pred             EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEee-c-CceEEEEecCCCEEEEEE
Q 003271          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFK-S-GATQMRFQPRLGRILAAA  699 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~--I~iwDl~s~~~~~~~~-~-~i~~l~fsp~~~~ll~~s  699 (835)
                      ||+.++.  ...+..+......++|+|+++.++++...+|.  |+++|+.+++...... + .....+|+|++++++..+
T Consensus       277 ~d~~~g~--~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~  354 (433)
T PRK04922        277 MDLGSRQ--LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVH  354 (433)
T ss_pred             EECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEE
Confidence            9998765  44555565566788999999988877766655  7777877765443322 2 244689999999998876


Q ss_pred             cCC---cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C-C--eEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          700 IEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-E--LVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       700 ~dg---~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D-g--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      .++   .|.+||+.++... .+. +......+.|+|||++|+..+ + +  .|+++++...    ....+..+.+.+...
T Consensus       355 ~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~----~~~~l~~~~g~~~~p  428 (433)
T PRK04922        355 GSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR----VRQRLVSADGEVREP  428 (433)
T ss_pred             CCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEEcccCCCCCCCC
Confidence            543   6999999887655 333 333455679999999888776 2 2  6777877543    334444445566677


Q ss_pred             EEeC
Q 003271          773 VFHP  776 (835)
Q Consensus       773 ~fsp  776 (835)
                      +|+|
T Consensus       429 ~wsp  432 (433)
T PRK04922        429 AWSP  432 (433)
T ss_pred             ccCC
Confidence            7776

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.49  E-value=2e-12  Score=141.29  Aligned_cols=167  Identities=17%  Similarity=0.264  Sum_probs=129.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCeEEEEec----cCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCC---------
Q 003271          565 PDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD---------  630 (835)
Q Consensus       565 pdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~----~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~---------  630 (835)
                      +++--|+.|-..|.|.+.|....+..+.+.    -....|+||.|-|. ...++++-.+|.+++||.....         
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            455567888888999998876532222121    13468999999995 4566677789999999763110         


Q ss_pred             ------------------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEe
Q 003271          631 ------------------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQ  689 (835)
Q Consensus       631 ------------------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fs  689 (835)
                                        .++..+..-.+.|..++|+|||. .|++.+.||.++|||..+.+.+..+   -++..|++|+
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~-~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWS  341 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGK-YLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWS  341 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCc-eEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEc
Confidence                              11122222345789999999987 6678889999999999988776544   4789999999


Q ss_pred             cCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC
Q 003271          690 PRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT  732 (835)
Q Consensus       690 p~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp  732 (835)
                      |||++|++|++|.-|.||.+...+.+..-.+|+++|..|+|+|
T Consensus       342 PDGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  342 PDGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             CCccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecc
Confidence            9999999999999999999999999999999999999999997

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.48  E-value=3.3e-11  Score=134.67  Aligned_cols=259  Identities=10%  Similarity=0.049  Sum_probs=170.6

Q ss_pred             EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 003271          570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs  649 (835)
                      +++-..++.|.|.|..+.+.+.++......-..+.|+||++++++++.||.|.++|+.+.+. +..+.. .....+++++
T Consensus         9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~-v~~i~~-G~~~~~i~~s   86 (369)
T PF02239_consen    9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKV-VATIKV-GGNPRGIAVS   86 (369)
T ss_dssp             EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSE-EEEEE--SSEEEEEEE-
T ss_pred             EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccE-EEEEec-CCCcceEEEc
Confidence            34556789999999999999999976555445578999999999999999999999999874 555543 3457889999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCeeeeEeec----------CceEEEEecCCCEEEEEEcC-CcEEEEECCCCeEE-EE
Q 003271          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----------GATQMRFQPRLGRILAAAIE-NYISILDVETQVCR-LK  717 (835)
Q Consensus       650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----------~i~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i-~~  717 (835)
                      ++|+++++++..++.+.++|.++.+.++.+..          .+..+..++....+++.-.| +.|.+.|......+ ..
T Consensus        87 ~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~  166 (369)
T PF02239_consen   87 PDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVT  166 (369)
T ss_dssp             -TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEE
T ss_pred             CCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccccee
Confidence            99999999999999999999999998887753          24566778888877777665 88999998765332 23


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec----CCCceEEEEEeCC----------CCEE
Q 003271          718 LQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPT----------FPSL  781 (835)
Q Consensus       718 l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~----~~~~V~sv~fspd----------g~~L  781 (835)
                      ............|+|+++|++++.  ++.|.++|..+.   +.+..+..    |...+..+ .+|.          +...
T Consensus       167 ~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~---k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~  242 (369)
T PF02239_consen  167 TIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTG---KLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFA  242 (369)
T ss_dssp             EEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTT---EEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSE
T ss_pred             eecccccccccccCcccceeeecccccceeEEEeeccc---eEEEEeeccccccccccccc-cCCCcceEEeecccccee
Confidence            333556788899999999988876  779999999886   33333321    22222222 2222          2233


Q ss_pred             EEEEcCCeEEEEEcCCCcEEE-eccCCCCeeEEEEeCCCCEEEEE----ECCCcEEEeC
Q 003271          782 LVIGCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASA----SHDKCVKIWK  835 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~~~~~-l~~h~~~V~~la~spdg~~LaSg----s~DG~V~IWd  835 (835)
                      ++.-..+.+.+||....+.+. +...... .-+..+|++++|...    ...+.|.|+|
T Consensus       243 ~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD  300 (369)
T PF02239_consen  243 IPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVID  300 (369)
T ss_dssp             EEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEE
T ss_pred             cccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEE
Confidence            333333456678888888884 4444444 778889999999987    3446788775

...

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.48  E-value=1.3e-11  Score=140.92  Aligned_cols=230  Identities=17%  Similarity=0.130  Sum_probs=160.1

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      ..|.++|..... ...+..+...+.+.+|+||+++|+.++.+   ..|++||+.++..  ..+..+...+.+++|+|+++
T Consensus       170 ~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~--~~~~~~~~~~~~~~~spDg~  246 (417)
T TIGR02800       170 YELQVADYDGAN-PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQR--EKVASFPGMNGAPAFSPDGS  246 (417)
T ss_pred             ceEEEEcCCCCC-CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCE--EEeecCCCCccceEECCCCC
Confidence            468888876444 34455567789999999999999887754   4799999987653  33444556677899999998


Q ss_pred             cEEEEEeCCC--cEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCeE
Q 003271          654 DLLCSCDNNS--EIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVH  726 (835)
Q Consensus       654 ~ll~sgs~Dg--~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~  726 (835)
                      .++++.+.++  .|++||+.++.......  .......|+|++..|++++.. +  .|+++|+.+++.. .+..+...+.
T Consensus       247 ~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~  325 (417)
T TIGR02800       247 KLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNA  325 (417)
T ss_pred             EEEEEECCCCCccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCcc
Confidence            8887776554  59999998775443322  224467899999988877653 3  6888898877644 3333556677


Q ss_pred             EEEEcCCCCEEEEEe-CC---eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCc
Q 003271          727 SVCWNTSGEYLASVS-DE---LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENK  799 (835)
Q Consensus       727 sl~fspdg~~Lasgs-Dg---~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~  799 (835)
                      .+.|+|+|++|+.++ ++   .|.+||+.++.   . ..+.. ........|+|++++|+.++.++   .+++++.....
T Consensus       326 ~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~---~-~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~  400 (417)
T TIGR02800       326 SPSWSPDGDLIAFVHREGGGFNIAVMDLDGGG---E-RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRF  400 (417)
T ss_pred             CeEECCCCCEEEEEEccCCceEEEEEeCCCCC---e-EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCce
Confidence            889999999998887 44   78899987752   1 22222 12334568999999998887765   56777765554


Q ss_pred             EEEeccCCCCeeEEEE
Q 003271          800 TLTLSAHDKLVSSLAA  815 (835)
Q Consensus       800 ~~~l~~h~~~V~~la~  815 (835)
                      ...+..+.+.+..++|
T Consensus       401 ~~~~~~~~g~~~~~~w  416 (417)
T TIGR02800       401 RARLPLGNGDVREPAW  416 (417)
T ss_pred             eeECCCCCCCcCCCCC
Confidence            4445444555555555

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.47  E-value=4.7e-12  Score=149.40  Aligned_cols=249  Identities=17%  Similarity=0.232  Sum_probs=172.9

Q ss_pred             EEcCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCc
Q 003271          582 WCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~------~~~~~~~h~~~V~sl~fsp~g~~  654 (835)
                      |+. .|..+..+..|...|..++.++.. .+|+|||.||+|+|||...-..      +..++......+.++...+.++.
T Consensus      1034 W~p-~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred             CCc-cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence            554 578888999999999999988764 9999999999999999864221      12344446788999999998775


Q ss_pred             EEEEEeCCCcEEEEECCCCee-------eeEee----cCc-eEEEEecC-CC-EEEEEEcCCcEEEEECCCCeEEEEEc-
Q 003271          655 LLCSCDNNSEIRYWSINNGSC-------AGVFK----SGA-TQMRFQPR-LG-RILAAAIENYISILDVETQVCRLKLQ-  719 (835)
Q Consensus       655 ll~sgs~Dg~I~iwDl~s~~~-------~~~~~----~~i-~~l~fsp~-~~-~ll~~s~dg~I~IwDl~t~~~i~~l~-  719 (835)
                      ++ .++.||.|++.+++-.+.       .+..+    +.+ ...+|... .. .++.++..+.|..||++.......++ 
T Consensus      1113 ~A-v~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~ 1191 (1431)
T KOG1240|consen 1113 FA-VSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKN 1191 (1431)
T ss_pred             EE-EEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhc
Confidence            54 568899999999976211       11111    112 22223222 23 56777778999999999876655444 


Q ss_pred             -CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-cCCCceEEEEEeCCCC---EEEEEEc--CCeEE
Q 003271          720 -GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFP---SLLVIGC--YETLE  791 (835)
Q Consensus       720 -~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-~~~~~V~sv~fspdg~---~L~sgs~--dg~I~  791 (835)
                       ...+.|++++.+|.+.+++.|+ .|.+.+||++-+   ..+..+. .+..++..+..+|..+   ..++++.  .+.|.
T Consensus      1192 ~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~---~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs 1268 (1431)
T KOG1240|consen 1192 QLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR---VPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVS 1268 (1431)
T ss_pred             CccccceeEEEecCCceEEEEecCCceEEEEEeecC---ceeecccCcccCCcceEEeeccCCCCceEEEecccCCCcee
Confidence             2457899999999999999999 899999999987   4444433 3346677776666443   4554444  56899


Q ss_pred             EEEcCCCcEEE-eccC-------------------CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          792 LWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       792 IwDl~~~~~~~-l~~h-------------------~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|++.++.+.. +...                   .-.....++...+.++.+|+.|..|+.||
T Consensus      1269 ~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD 1332 (1431)
T KOG1240|consen 1269 TWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWD 1332 (1431)
T ss_pred             eeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeecc
Confidence            99999886542 1111                   11122233334456899999999999998

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.7e-11  Score=140.83  Aligned_cols=201  Identities=13%  Similarity=0.189  Sum_probs=145.9

Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCeeee--EeecCceEEEEecCCCE
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAG--VFKSGATQMRFQPRLGR  694 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~--Dg~I~iwDl~s~~~~~--~~~~~i~~l~fsp~~~~  694 (835)
                      ..|.+||.+...  .+.+..|...+.+..|+|+|+.++++...  +..|++||+.+++...  .+.+.+...+|+|+|+.
T Consensus       182 ~~l~~~d~dg~~--~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~  259 (435)
T PRK05137        182 KRLAIMDQDGAN--VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDGRK  259 (435)
T ss_pred             eEEEEECCCCCC--cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCCCE
Confidence            378888886543  46677788899999999999877766543  4689999998886543  23455678899999998


Q ss_pred             EEEE-EcCC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCC
Q 003271          695 ILAA-AIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       695 ll~~-s~dg--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                      ++.. +.++  .|++||+.++... .+..+.....+..|+|||+.|+..+  ++  .|++||+.++.    ...+.....
T Consensus       260 la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~----~~~lt~~~~  334 (435)
T PRK05137        260 VVMSLSQGGNTDIYTMDLRSGTTT-RLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSN----PRRISFGGG  334 (435)
T ss_pred             EEEEEecCCCceEEEEECCCCceE-EccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCC----eEEeecCCC
Confidence            7654 4444  4888899887654 4555666677899999999988877  33  68888876652    233333345


Q ss_pred             ceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          768 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                      .+....|+|+|+.|+....++   .|.+||+.++....+. ....+..+.|+|||++|+..+.
T Consensus       335 ~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt-~~~~~~~p~~spDG~~i~~~~~  396 (435)
T PRK05137        335 RYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILT-SGFLVEGPTWAPNGRVIMFFRQ  396 (435)
T ss_pred             cccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEecc-CCCCCCCCeECCCCCEEEEEEc
Confidence            567789999999998877543   6889998766544332 3345778999999998876654

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.46  E-value=2.8e-11  Score=138.91  Aligned_cols=231  Identities=16%  Similarity=0.055  Sum_probs=161.3

Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~  654 (835)
                      .|.++|.+.+.. ..+..+...+...+|+|||+.|+..+.+   ..|.+||+.++..  ..+....+.+....|+|+|+.
T Consensus       180 ~l~~~d~~g~~~-~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~--~~l~~~~g~~~~~~~SpDG~~  256 (430)
T PRK00178        180 TLQRSDYDGARA-VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRR--EQITNFEGLNGAPAWSPDGSK  256 (430)
T ss_pred             EEEEECCCCCCc-eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCE--EEccCCCCCcCCeEECCCCCE
Confidence            477888875544 4455677789999999999998877654   3699999987653  333334445667899999998


Q ss_pred             EEEEEeCCC--cEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEEEEEcCCCCCeEE
Q 003271          655 LLCSCDNNS--EIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS  727 (835)
Q Consensus       655 ll~sgs~Dg--~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~I~s  727 (835)
                      ++++.+.++  .|++||+.+++......  .......|+|+++.++..+..   ..|+++|+.+++...... .......
T Consensus       257 la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~-~~~~~~~  335 (430)
T PRK00178        257 LAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTF-VGNYNAR  335 (430)
T ss_pred             EEEEEccCCCceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeec-CCCCccc
Confidence            887776665  68889998876544332  235567899999988877653   358888888776543222 2233446


Q ss_pred             EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcE
Q 003271          728 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT  800 (835)
Q Consensus       728 l~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~  800 (835)
                      ..|+|+|++|+..+  ++  .|.+||+.++..    ..+.. ........|+|+|+.|+..+.++   .|+++++.....
T Consensus       336 ~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~----~~lt~-~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~  410 (430)
T PRK00178        336 PRLSADGKTLVMVHRQDGNFHVAAQDLQRGSV----RILTD-TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR  410 (430)
T ss_pred             eEECCCCCEEEEEEccCCceEEEEEECCCCCE----EEccC-CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            78999999998876  33  688899887632    22221 11223568999999998877653   688888876665


Q ss_pred             EEeccCCCCeeEEEEeC
Q 003271          801 LTLSAHDKLVSSLAAST  817 (835)
Q Consensus       801 ~~l~~h~~~V~~la~sp  817 (835)
                      ..+..+.+.+...+|+|
T Consensus       411 ~~l~~~~g~~~~p~ws~  427 (430)
T PRK00178        411 LPLPTAQGEVREPSWSP  427 (430)
T ss_pred             EECcCCCCCcCCCccCC
Confidence            56656667788888876

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.46  E-value=7e-12  Score=130.60  Aligned_cols=276  Identities=17%  Similarity=0.310  Sum_probs=187.6

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-----EEEEeccCC------------CCeEEEEECCCC--CEEEE
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHT------------QWITDVRFSPSL--SRLAT  614 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----~i~~l~~h~------------~~V~sv~fspdg--~~Lat  614 (835)
                      ..+-|.+|.|..+|.+||+|..+|.|.+|.-+...     ....+..|.            ..|..|+|.+++  ..++.
T Consensus        24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl  103 (433)
T KOG1354|consen   24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL  103 (433)
T ss_pred             hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence            34568999999999999999999999999643221     233333332            458899998864  46777


Q ss_pred             EECCCeEEEEecCCCCce----------------------------------eEE-eecCCCCeEEEEEcCCCCcEEEEE
Q 003271          615 SSADRTVRVWDTENPDYS----------------------------------LRT-FTGHSTTVMSLDFHPSKEDLLCSC  659 (835)
Q Consensus       615 gs~Dg~I~IWDl~t~~~~----------------------------------~~~-~~~h~~~V~sl~fsp~g~~ll~sg  659 (835)
                      ...|.+|++|.+......                                  .+. -..|.-.|.+|.++.|...++ ++
T Consensus       104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~l-SA  182 (433)
T KOG1354|consen  104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFL-SA  182 (433)
T ss_pred             ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEe-ec
Confidence            889999999987643210                                  111 134777899999999977555 54


Q ss_pred             eCCCcEEEEECCCCe-eeeEe--e--------cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeE----EEEE-----
Q 003271          660 DNNSEIRYWSINNGS-CAGVF--K--------SGATQMRFQPRL-GRILAAAIENYISILDVETQVC----RLKL-----  718 (835)
Q Consensus       660 s~Dg~I~iwDl~s~~-~~~~~--~--------~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~----i~~l-----  718 (835)
                       +|-.|.+|+++-.. +....  +        .-+++..|+|.. +.++..+..|.|++.|++....    ...+     
T Consensus       183 -DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEeped  261 (433)
T KOG1354|consen  183 -DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPED  261 (433)
T ss_pred             -cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccC
Confidence             48899999986432 22211  1        227788899975 5566677789999999984311    1111     


Q ss_pred             -------cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCC------------Cc---eEEEEEeC
Q 003271          719 -------QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NK---FHSCVFHP  776 (835)
Q Consensus       719 -------~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~------------~~---V~sv~fsp  776 (835)
                             .+--..|..+.|+++|+|+++-.--+|++||+....  +.+.++..|.            ..   -..|+|+.
T Consensus       262 p~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~--~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg  339 (433)
T KOG1354|consen  262 PSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEA--KPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG  339 (433)
T ss_pred             CcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccC--CcceEEeehHhHHHHHHHHhhccchhheeEEEEcC
Confidence                   112246788999999999998887899999996543  3333433332            11   25688999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEE--Ee--------------------ccC-------------CCCeeEEEEeCCCCE
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTL--TL--------------------SAH-------------DKLVSSLAASTVNGM  821 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~--~l--------------------~~h-------------~~~V~~la~spdg~~  821 (835)
                      ++.++++|+..+.+++|++..|...  ++                    .+.             ...|...+|+|..+.
T Consensus       340 ~~~~v~TGsy~n~frvf~~~~gsk~d~tl~asr~~~~~~~~~k~~~V~~~g~r~~~~~~vd~ldf~kkilh~aWhp~en~  419 (433)
T KOG1354|consen  340 NDSYVMTGSYNNVFRVFNLARGSKEDFTLEASRKNMKPRKVLKLRLVSSSGKRKRDEISVDALDFRKKILHTAWHPKENS  419 (433)
T ss_pred             CcceEecccccceEEEecCCCCcceeecccccccCCcccccccceeeecCCCccccccccchhhhhhHHHhhccCCccce
Confidence            9999999999999999996544321  00                    000             112456689999888


Q ss_pred             EEEEECCCcEEEe
Q 003271          822 VASASHDKCVKIW  834 (835)
Q Consensus       822 LaSgs~DG~V~IW  834 (835)
                      ||.+... .++||
T Consensus       420 ia~aatn-nlyif  431 (433)
T KOG1354|consen  420 IAVAATN-NLYIF  431 (433)
T ss_pred             eeeeecC-ceEEe
Confidence            8887655 45554

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.46  E-value=1.3e-13  Score=148.30  Aligned_cols=227  Identities=15%  Similarity=0.188  Sum_probs=185.1

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~  677 (835)
                      -.-+.+.|+.+|++|+.|+..|.|..+|..+...  ..-..-...|.++.|..+.. +|+++ ....++|||-. |..++
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L--~~Ei~v~Etv~Dv~~LHneq-~~AVA-QK~y~yvYD~~-GtElH  204 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKL--HFEINVMETVRDVTFLHNEQ-FFAVA-QKKYVYVYDNN-GTELH  204 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeeccccee--eeeeehhhhhhhhhhhcchH-HHHhh-hhceEEEecCC-CcEEe
Confidence            3456789999999999999999999999998764  33333456788999987644 45444 47789999976 66666


Q ss_pred             Eee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271          678 VFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       678 ~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~  754 (835)
                      +++  ..+..+.|-|..-.|++++..|.+...|+.+|+.+..+....+.+..++-+|-+-.+-+|. .|+|.+|..... 
T Consensus       205 Clk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk-  283 (545)
T KOG1272|consen  205 CLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK-  283 (545)
T ss_pred             ehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc-
Confidence            666  4588899999877788888889999999999999999888888999999999999898888 999999998877 


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                        +.+..+-+|.++|.++++.++|.|+++++.|..|+|||++.-..+ ++.. ......++||..|  +++++....|.|
T Consensus       284 --ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~t-p~~a~~ls~Sqkg--lLA~~~G~~v~i  358 (545)
T KOG1272|consen  284 --EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRT-PHPASNLSLSQKG--LLALSYGDHVQI  358 (545)
T ss_pred             --chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeec-CCCcccccccccc--ceeeecCCeeee
Confidence              677778899999999999999999999999999999999887654 3332 4567788888666  444555567999


Q ss_pred             eC
Q 003271          834 WK  835 (835)
Q Consensus       834 Wd  835 (835)
                      |.
T Consensus       359 w~  360 (545)
T KOG1272|consen  359 WK  360 (545)
T ss_pred             eh
Confidence            84

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.45  E-value=5e-12  Score=133.98  Aligned_cols=234  Identities=16%  Similarity=0.180  Sum_probs=177.7

Q ss_pred             CCCeEEEEECCCC--CEEEEEECCCeEEEEecCCCCcee-----EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271          597 TQWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYSL-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (835)
Q Consensus       597 ~~~V~sv~fspdg--~~Latgs~Dg~I~IWDl~t~~~~~-----~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD  669 (835)
                      ...|..++|.-++  ..|+..+.|..+..+.+......-     ........+|..+.....   .|++|..+|.+.+|.
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~dg---~Litc~~sG~l~~~~  131 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLADG---TLITCVSSGNLQVRH  131 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcCC---EEEEEecCCcEEEEe
Confidence            3467777776553  345555466667777766544311     133445566777766532   566888899999999


Q ss_pred             CCCCe-----eeeEe-ecCceEEEEecCCCEEEE-EEcC--CcEEEEECCCCeEEEEEcCC---------CCCeEEEEEc
Q 003271          670 INNGS-----CAGVF-KSGATQMRFQPRLGRILA-AAIE--NYISILDVETQVCRLKLQGH---------KNQVHSVCWN  731 (835)
Q Consensus       670 l~s~~-----~~~~~-~~~i~~l~fsp~~~~ll~-~s~d--g~I~IwDl~t~~~i~~l~~h---------~~~I~sl~fs  731 (835)
                      .+.+.     .+..- ..+...+.-++...+|++ |+..  +.+.|||++..+.+..-+.-         .-+++++.|-
T Consensus       132 ~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl  211 (412)
T KOG3881|consen  132 DKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFL  211 (412)
T ss_pred             ccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeeccceec
Confidence            98433     22221 234666777776666665 7777  88999999988766654432         2356788888


Q ss_pred             CC--CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccC
Q 003271          732 TS--GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAH  806 (835)
Q Consensus       732 pd--g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h  806 (835)
                      +.  ...|++++ -+.|++||.+...  +++..+.....++.++...|++++|+++...+.|..||++.++..  .+.+.
T Consensus       212 ~g~~~~~fat~T~~hqvR~YDt~~qR--RPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~  289 (412)
T KOG3881|consen  212 EGSPNYKFATITRYHQVRLYDTRHQR--RPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGI  289 (412)
T ss_pred             CCCCCceEEEEecceeEEEecCcccC--cceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCc
Confidence            87  78888888 9999999999764  677778878899999999999999999999999999999999988  47889


Q ss_pred             CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          807 DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       807 ~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+.|++|..+|...+|++||-|..|||+|
T Consensus       290 tGsirsih~hp~~~~las~GLDRyvRIhD  318 (412)
T KOG3881|consen  290 TGSIRSIHCHPTHPVLASCGLDRYVRIHD  318 (412)
T ss_pred             cCCcceEEEcCCCceEEeeccceeEEEee
Confidence            99999999999999999999999999997

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.44  E-value=2.8e-12  Score=129.44  Aligned_cols=262  Identities=16%  Similarity=0.213  Sum_probs=177.6

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      .++..|..-+.|.+|......                   ....++ .|...|+.+...|+ ..|.+-+.|+.+.+|++.
T Consensus        26 ~rL~sg~~~G~V~~w~lqt~r-------------------~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia   85 (323)
T KOG0322|consen   26 ERLMSGLSVGIVKMWVLQTER-------------------DLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIA   85 (323)
T ss_pred             hhhhcccccceEEEEEeecCc-------------------cchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEcc
Confidence            347789999999999544432                   223344 56777899988887 467888899999999998


Q ss_pred             CCeEEEEeccCCCCeEEEEECCC-----CC----EEEEEECCC-eEEEEecCCCCceeEE----eecCCCCeEEEEEcC-
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPS-----LS----RLATSSADR-TVRVWDTENPDYSLRT----FTGHSTTVMSLDFHP-  650 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspd-----g~----~Latgs~Dg-~I~IWDl~t~~~~~~~----~~~h~~~V~sl~fsp-  650 (835)
                      ....+..   |.-.+.++-|++.     ++    .++.-+... .+.+-|..... .+..    -....+.++|..+.- 
T Consensus        86 ~s~~i~i---~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~t-qv~i~dd~~~~Klgsvmc~~~~~~  161 (323)
T KOG0322|consen   86 YSAFISI---HSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTT-QVQIADDSERSKLGSVMCQDKDHA  161 (323)
T ss_pred             CcceEEE---eeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccc-eeEccCchhccccCceeeeecccc
Confidence            7554422   3344455555432     11    111111100 01111211110 0111    112345677777543 


Q ss_pred             -CCCcEEEEEeCCCcEEEEECCCCeeeeE-------------eecCceEEEEecCCCEEEEEEcCCcEEEEECCCC--eE
Q 003271          651 -SKEDLLCSCDNNSEIRYWSINNGSCAGV-------------FKSGATQMRFQPRLGRILAAAIENYISILDVETQ--VC  714 (835)
Q Consensus       651 -~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-------------~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~--~~  714 (835)
                       ....++++|.++|.|.+||+.++..+..             ++.++.++.|.+.-+.=+.++.+..+..|.+...  .+
T Consensus       162 c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gsl  241 (323)
T KOG0322|consen  162 CGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSL  241 (323)
T ss_pred             ccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcc
Confidence             2344677888999999999998743332             2345788888877666777888888888888643  21


Q ss_pred             --EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271          715 --RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE  791 (835)
Q Consensus       715 --i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~  791 (835)
                        ...+.-..-.|..+.+-||++++++++ |+.||||..++.   ..+..+..|...|.+++|+|+...+++++.|..|.
T Consensus       242 q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl---~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rIS  318 (323)
T KOG0322|consen  242 QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTL---NPLAVLKYHSAGVNAVAFSPDCELMAAASKDARIS  318 (323)
T ss_pred             cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccC---CchhhhhhhhcceeEEEeCCCCchhhhccCCceEE
Confidence              122222345688889999999999999 999999999998   77788888999999999999999999999999999


Q ss_pred             EEEc
Q 003271          792 LWNM  795 (835)
Q Consensus       792 IwDl  795 (835)
                      +|++
T Consensus       319 LWkL  322 (323)
T KOG0322|consen  319 LWKL  322 (323)
T ss_pred             eeec
Confidence            9986

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.42  E-value=1.1e-10  Score=127.42  Aligned_cols=271  Identities=17%  Similarity=0.246  Sum_probs=195.2

Q ss_pred             CCEEEEEEeCCCCEEEEEeCC---------------CeEEEEEcCCCeEEEEeccCCCC--eE-EEEECCCCCEEEEEEC
Q 003271          556 SKVESCHFSPDGKLLATGGHD---------------KKAVLWCTESFTVKSTLEEHTQW--IT-DVRFSPSLSRLATSSA  617 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~D---------------g~I~VWd~~t~~~i~~l~~h~~~--V~-sv~fspdg~~Latgs~  617 (835)
                      ..|..+.|+|.++||.+-...               ..+.|||+.++.++..+..-..+  .+ -+.|+.+.+++|-. .
T Consensus        72 ~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v  150 (561)
T COG5354          72 PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-V  150 (561)
T ss_pred             CCceecccCcccceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-c
Confidence            349999999999999986543               35999999999999999876665  55 68898888776655 3


Q ss_pred             CCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCc-EEEE-----EeCCCcEEEEECCCCeeeeE---eecCceEEE
Q 003271          618 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKED-LLCS-----CDNNSEIRYWSINNGSCAGV---FKSGATQMR  687 (835)
Q Consensus       618 Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fsp~g~~-ll~s-----gs~Dg~I~iwDl~s~~~~~~---~~~~i~~l~  687 (835)
                      ...++|+++ ++......+..- ...|....|+|.+++ .||.     ...++.+++|.+..++.+..   ++..-..+.
T Consensus       151 ~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLk  229 (561)
T COG5354         151 GSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLK  229 (561)
T ss_pred             cCeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEE
Confidence            346999997 433222222221 256888899987432 2332     35678999999987665543   446677889


Q ss_pred             EecCCCEEEEEEc-----------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCC
Q 003271          688 FQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG  753 (835)
Q Consensus       688 fsp~~~~ll~~s~-----------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~  753 (835)
                      |.+.|+++++-..           +..++++++....+.... +..++|..++|.|.++.+++++   +-.+.++|++..
T Consensus       230 W~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N  308 (561)
T COG5354         230 WQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN  308 (561)
T ss_pred             EecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccccceeecccccc
Confidence            9999998776432           356888888855444443 5688999999999988777665   779999999875


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE----
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS----  826 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs----  826 (835)
                          .  .+......-+.+.|+|.++++++++.++   .|.+||......+.-.-......-+.|+||+.++.+..    
T Consensus       309 ----l--~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k  382 (561)
T COG5354         309 ----L--RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEK  382 (561)
T ss_pred             ----e--EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCCceEeeccCCceEEEecCCCcc
Confidence                2  2233455667789999999999988875   89999988776553222223345568999999887764    


Q ss_pred             --CCCcEEEeC
Q 003271          827 --HDKCVKIWK  835 (835)
Q Consensus       827 --~DG~V~IWd  835 (835)
                        .|..|+|||
T Consensus       383 ~~~Dn~i~l~~  393 (561)
T COG5354         383 LRVDNSIKLWD  393 (561)
T ss_pred             cccCcceEEEE
Confidence              478899996

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.42  E-value=7.5e-12  Score=130.55  Aligned_cols=249  Identities=17%  Similarity=0.274  Sum_probs=191.9

Q ss_pred             ceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE-cCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCe
Q 003271          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC-TESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRT  620 (835)
Q Consensus       543 ~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd-~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~  620 (835)
                      +.+..+..++||.+.|++...-|...-+++.+.|.+++||- .+.++.-..+. ....+++++.+.++...|++|-..|+
T Consensus        12 ~kp~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   12 KKPELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             cchhhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecce
Confidence            33445667889999999999999888899999999999994 44555544442 24567899999999999999999999


Q ss_pred             EEEEecCCC---CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEE
Q 003271          621 VRVWDTENP---DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRI  695 (835)
Q Consensus       621 I~IWDl~t~---~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~l  695 (835)
                      +.-+.+...   -...+.+..|...|..+.|+-..+ .+++++.|..+.---.+.+..+..+  ....+.+.+.-.  +.
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e-~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~  168 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHE-WVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YA  168 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCce-eEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EE
Confidence            998876532   223567788999999999987755 5667887877765555555544332  222333333322  56


Q ss_pred             EEEEcCCcEEEEECC--CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          696 LAAAIENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       696 l~~s~dg~I~IwDl~--t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      ++|...|.|.+..+.  .-..+.++.+|...+.+++|.+....|.+|. |..|.+||+....  ....++.+|...|..+
T Consensus       169 fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~--g~~~el~gh~~kV~~l  246 (404)
T KOG1409|consen  169 FVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRK--GTAYELQGHNDKVQAL  246 (404)
T ss_pred             EecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCc--ceeeeeccchhhhhhh
Confidence            667777777776554  4567889999999999999999999999998 9999999997653  4667788899999999


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          773 VFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      ...+.-+.+++++.||.|.+||++
T Consensus       247 ~~~~~t~~l~S~~edg~i~~w~mn  270 (404)
T KOG1409|consen  247 SYAQHTRQLISCGEDGGIVVWNMN  270 (404)
T ss_pred             hhhhhheeeeeccCCCeEEEEecc
Confidence            998888899999999999999984

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.42  E-value=5.5e-11  Score=136.91  Aligned_cols=231  Identities=15%  Similarity=0.097  Sum_probs=157.0

Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC-C--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-g--~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~  654 (835)
                      .|.++|.+.... ..+..+...+.+..|+|||+.|+..+.+ +  .|++||+.+++.  ..+...........|+|+|+.
T Consensus       199 ~l~i~d~dG~~~-~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~--~~lt~~~g~~~~~~wSPDG~~  275 (448)
T PRK04792        199 QLMIADYDGYNE-QMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVR--EKVTSFPGINGAPRFSPDGKK  275 (448)
T ss_pred             EEEEEeCCCCCc-eEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCe--EEecCCCCCcCCeeECCCCCE
Confidence            577778765443 3455567789999999999988876543 2  588899987653  223323334457899999998


Q ss_pred             EEEEEeCCCc--EEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEEEEEcCCCCCeEE
Q 003271          655 LLCSCDNNSE--IRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHS  727 (835)
Q Consensus       655 ll~sgs~Dg~--I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~I~s  727 (835)
                      ++++.+.++.  |++||+.+++......  .......|+|++..++..+..   ..|+++|+.+++..... .+......
T Consensus       276 La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt-~~g~~~~~  354 (448)
T PRK04792        276 LALVLSKDGQPEIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLT-FEGEQNLG  354 (448)
T ss_pred             EEEEEeCCCCeEEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEe-cCCCCCcC
Confidence            8888777775  8888988776544332  235678899999988877642   35777888877654322 12233445


Q ss_pred             EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcE
Q 003271          728 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT  800 (835)
Q Consensus       728 l~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~  800 (835)
                      .+|+|||++|+..+  ++  .|.++|+.++..    ..+... .......|+|+|+.|+..+.++   .|++++.+....
T Consensus       355 ~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~----~~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~  429 (448)
T PRK04792        355 GSITPDGRSMIMVNRTNGKFNIARQDLETGAM----QVLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFK  429 (448)
T ss_pred             eeECCCCCEEEEEEecCCceEEEEEECCCCCe----EEccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCCCce
Confidence            78999999998876  34  566678776631    122211 1223458999999988877654   588888865555


Q ss_pred             EEeccCCCCeeEEEEeC
Q 003271          801 LTLSAHDKLVSSLAAST  817 (835)
Q Consensus       801 ~~l~~h~~~V~~la~sp  817 (835)
                      ..+..+.+.+...+|+|
T Consensus       430 ~~l~~~~g~~~~p~Wsp  446 (448)
T PRK04792        430 ARLPAGQGEVKSPAWSP  446 (448)
T ss_pred             EECcCCCCCcCCCccCC
Confidence            56666667788888887

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.6e-12  Score=140.62  Aligned_cols=279  Identities=15%  Similarity=0.181  Sum_probs=211.7

Q ss_pred             CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCC
Q 003271          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHD  576 (835)
Q Consensus       499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~D  576 (835)
                      .+.+......+++||.|..|.+|.+....                  .......+|...|.--.|-|  +..-|++++.|
T Consensus       147 tV~FN~~Gd~l~SgSDD~~vv~WdW~~~~------------------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~d  208 (559)
T KOG1334|consen  147 TVHFNQRGDVLASGSDDLQVVVWDWVSGS------------------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRD  208 (559)
T ss_pred             eeeecccCceeeccCccceEEeehhhccC------------------cccccccccccchhhhhccCCCCCcCceecccc
Confidence            44455566799999999999999443331                  12333468998898888888  34569999999


Q ss_pred             CeEEEEEcCC-CeE--EEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCce--eEEeecCCC---CeEEEE
Q 003271          577 KKAVLWCTES-FTV--KSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYS--LRTFTGHST---TVMSLD  647 (835)
Q Consensus       577 g~I~VWd~~t-~~~--i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~--~~~~~~h~~---~V~sl~  647 (835)
                      |.|++=.+.. +.+  ...+..|.+.|..++.-|+. ..|.+++.|+.|.-+|+......  +.....+..   ...+|+
T Consensus       209 gqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia  288 (559)
T KOG1334|consen  209 GQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIA  288 (559)
T ss_pred             CceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEe
Confidence            9999987643 322  35567799999999999974 46899999999999998865421  122223333   567899


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCeee------e---------EeecCceEEEEecCCCEEEEEEcCCcEEEEECCC-
Q 003271          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCA------G---------VFKSGATQMRFQPRLGRILAAAIENYISILDVET-  711 (835)
Q Consensus       648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~------~---------~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t-  711 (835)
                      .+|...+.+++++.|-.+++||.+.-...      .         .....|++++|+.++..+++...|-.|++|.-.- 
T Consensus       289 ~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~  368 (559)
T KOG1334|consen  289 VDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMG  368 (559)
T ss_pred             cCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccc
Confidence            99998889999999999999998753211      1         1224599999999999999999999999995432 


Q ss_pred             -C----------eEEEE-EcCCCC--CeEEEEE-cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271          712 -Q----------VCRLK-LQGHKN--QVHSVCW-NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  775 (835)
Q Consensus       712 -~----------~~i~~-l~~h~~--~I~sl~f-spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs  775 (835)
                       +          ..+.. +++|..  .|.++-| -|...|+++|+ -|.|.||+-.++   +.+..+.+....|+|+.-+
T Consensus       369 ~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~---eii~~MegDr~VVNCLEpH  445 (559)
T KOG1334|consen  369 DGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG---EIIRFMEGDRHVVNCLEPH  445 (559)
T ss_pred             cCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh---HHHHHhhcccceEeccCCC
Confidence             2          12223 677765  4667754 68889999999 569999999887   6777777777789999999


Q ss_pred             CCCCEEEEEEcCCeEEEEEcCCC
Q 003271          776 PTFPSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       776 pdg~~L~sgs~dg~I~IwDl~~~  798 (835)
                      |.-+.|++++-|..|+||.-.+.
T Consensus       446 P~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  446 PHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             CCCchhhccCCccceeeecCCcc
Confidence            99999999999999999987443

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.42  E-value=1.2e-11  Score=136.10  Aligned_cols=237  Identities=15%  Similarity=0.197  Sum_probs=170.0

Q ss_pred             cCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeecCCCCeEEEE-EcCCCCcEEEEEeCCCcEEEEECCC
Q 003271          595 EHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINN  672 (835)
Q Consensus       595 ~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~-fsp~g~~ll~sgs~Dg~I~iwDl~s  672 (835)
                      +|....+.|..+|||.|+ +||.+.-.|+|||+.+-.  +..-......|..+. .+.|-... |.--.|.+|-+...-.
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLS--LKFERhlDae~V~feiLsDD~SK~-v~L~~DR~IefHak~G  125 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLS--LKFERHLDAEVVDFEILSDDYSKS-VFLQNDRTIEFHAKYG  125 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccce--eeeeecccccceeEEEeccchhhh-eEeecCceeeehhhcC
Confidence            477888999999999985 566678899999998644  333333333444333 33332222 2333466776554332


Q ss_pred             CeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003271          673 GSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG  751 (835)
Q Consensus       673 ~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~  751 (835)
                      ......++.....++++.-.--|++++....|+-++++.|..+..+......+++|..++...+|++|+ +|.|.+||.+
T Consensus       126 ~hy~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR  205 (703)
T KOG2321|consen  126 RHYRTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPR  205 (703)
T ss_pred             eeeeeecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecch
Confidence            222233344455666666556688888888999999999999988887889999999999999999999 9999999999


Q ss_pred             CCCCcceEE---EeecCCC-----ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCC--CeeEEEEeCC--C
Q 003271          752 SGSKGECIH---ELSCTGN-----KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK--LVSSLAASTV--N  819 (835)
Q Consensus       752 t~~~~~~i~---~l~~~~~-----~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~--~V~~la~spd--g  819 (835)
                      +......+.   .+..+.+     .|+++.|+.+|-.+++|+.+|.|.|||++..+.+....|..  +|..+.|.+.  .
T Consensus       206 ~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q  285 (703)
T KOG2321|consen  206 DKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ  285 (703)
T ss_pred             hhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCC
Confidence            874322221   1122223     49999999999999999999999999999999997777754  6888888765  3


Q ss_pred             CEEEEEECCCcEEEeC
Q 003271          820 GMVASASHDKCVKIWK  835 (835)
Q Consensus       820 ~~LaSgs~DG~V~IWd  835 (835)
                      ..|+|. +...++|||
T Consensus       286 ~~v~S~-Dk~~~kiWd  300 (703)
T KOG2321|consen  286 NKVVSM-DKRILKIWD  300 (703)
T ss_pred             ceEEec-chHHhhhcc
Confidence            456654 456799997

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.41  E-value=6.5e-11  Score=124.27  Aligned_cols=229  Identities=17%  Similarity=0.224  Sum_probs=143.7

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      .+...++| ..|+++.|.+||..|++++. |..|.|||.+++..+......-+.++-+.|+||+.+|+.+..|+..++|+
T Consensus       188 qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~  266 (445)
T KOG2139|consen  188 QVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQ  266 (445)
T ss_pred             hheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeeh
Confidence            34455677 78999999999999999874 67899999999887765545567899999999999999999999999997


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEE-EEEcCCcE
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRIL-AAAIENYI  704 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll-~~s~dg~I  704 (835)
                      ........+... ..+.|...+|+|+|..++++++..-.|  |.+.-                ......+. .++.....
T Consensus       267 e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp~l--ysl~f----------------~~~~~~~~~~~~~k~~l  327 (445)
T KOG2139|consen  267 ENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSPRL--YSLTF----------------DGEDSVFLRPQSIKRVL  327 (445)
T ss_pred             hcccceecceec-cCCceeeeeecCCCCEEEEEEcCCceE--EEEee----------------cCCCccccCcccceeee
Confidence            664443333333 345899999999999999998754443  33321                11100000 11111222


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCC---------eEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  775 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg---------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs  775 (835)
                      .+-|+..-....--.-..+++.+++|+|.|.||++.-.+         .|.+||.+.....+....-...+.....++|+
T Consensus       328 liaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~  407 (445)
T KOG2139|consen  328 LIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFG  407 (445)
T ss_pred             eeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEee
Confidence            233332111000001135678999999999999987622         46667766542111111001112224445555


Q ss_pred             C---CCCEEEEEEcCCeEEEEEc
Q 003271          776 P---TFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       776 p---dg~~L~sgs~dg~I~IwDl  795 (835)
                      |   ++++|.++=+.|.|.-|++
T Consensus       408 pl~n~g~lLsiaWsTGriq~ypl  430 (445)
T KOG2139|consen  408 PLKNEGRLLSIAWSTGRIQRYPL  430 (445)
T ss_pred             ecccCCcEEEEEeccCceEeeee
Confidence            4   4556666666666666654

>KOG4594 consensus Sequence-specific single-stranded-DNA-binding protein [Replication, recombination and repair; Transcription; General function prediction only]

Probab=99.39  E-value=2.2e-13  Score=137.53  Aligned_cols=77  Identities=32%  Similarity=0.750  Sum_probs=64.1

Q ss_pred             CcccHHHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCCcccCCCCCcchhhHHHHHHHhhhhccc----ccchhhhhhh
Q 003271            4 NNWEADKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDPVAIDAPGGFLFEWWSVFWDIFIARTNE----KHSESAASYI   79 (835)
Q Consensus         4 ~~~~~~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~~~~~~~~~fL~eww~~Fwdif~a~~~~----~~s~~~~~yi   79 (835)
                      ++-.|+++|..||||||++-|..++|+.|+.|..+..+ +.+-.+-+||.+|||||||+|+|...+    .||..+..|.
T Consensus        12 Sd~qArekLa~YvYEYLlhvgaqksaqtflseirwekn-itlge~p~FLhsWWcvFwDLYcAAPeRRd~c~HSsEAKaFh   90 (354)
T KOG4594|consen   12 SDSQAREKLALYVYEYLLHVGAQKSAQTFLSEIRWEKN-ITLGEPPGFLHSWWCVFWDLYCAAPERRDTCEHSSEAKAFH   90 (354)
T ss_pred             cchhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhh-hhccCCcchhhhhHHHHHHHhhcCccccCcccccHhhhhhh
Confidence            56679999999999999999999999999999887766 556677799999999999999995544    4666666655


Q ss_pred             HH
Q 003271           80 ES   81 (835)
Q Consensus        80 q~   81 (835)
                      ++
T Consensus        91 dy   92 (354)
T KOG4594|consen   91 DY   92 (354)
T ss_pred             hh
Confidence            43

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.38  E-value=1.1e-09  Score=120.19  Aligned_cols=256  Identities=12%  Similarity=0.069  Sum_probs=170.4

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC----------CCeEEEEecCCCCceeEEeecC-------
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH-------  639 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~----------Dg~I~IWDl~t~~~~~~~~~~h-------  639 (835)
                      +.|.|.|..+++.+..+.....+- .+ ++||++.|+++..          +..|.|||+.+.+. +..+..-       
T Consensus        27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~-~~~i~~p~~p~~~~  103 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP-IADIELPEGPRFLV  103 (352)
T ss_pred             ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE-EeEEccCCCchhhc
Confidence            899999999999998886544433 34 9999998888766          78999999999875 3333321       


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCC-CeEE-E
Q 003271          640 STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVET-QVCR-L  716 (835)
Q Consensus       640 ~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t-~~~i-~  716 (835)
                      ......++++|+|+.++++--. +..|.++|+.+++.+..+..+.....+-.....+.+.|.||......+.+ ++.. .
T Consensus       104 ~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~  183 (352)
T TIGR02658       104 GTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIK  183 (352)
T ss_pred             cCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEe
Confidence            1233478899999988776644 89999999999999988875433333322223333445565555543332 2211 1


Q ss_pred             E---EcCCCCCeE-EEEEcC-CCCEEEEEeCCeEEEEEcCCCCC--cceEEEeec-------CCCceEEEEEeCCCCEEE
Q 003271          717 K---LQGHKNQVH-SVCWNT-SGEYLASVSDELVRVWSIGSGSK--GECIHELSC-------TGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       717 ~---l~~h~~~I~-sl~fsp-dg~~LasgsDg~I~IwDl~t~~~--~~~i~~l~~-------~~~~V~sv~fspdg~~L~  782 (835)
                      .   +.+...++. .-.|.+ +|++++....|.|.+.|+.....  ...+..+..       ....+.-++++++++.++
T Consensus       184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~ly  263 (352)
T TIGR02658       184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIY  263 (352)
T ss_pred             eeeeecCCccccccCCceEcCCCcEEEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEE
Confidence            1   111001110 003345 88888888899999999755321  112222111       123334499999999999


Q ss_pred             EEE----------cCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003271          783 VIG----------CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  835 (835)
Q Consensus       783 sgs----------~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~DG~V~IWd  835 (835)
                      +..          ..+.|.++|..+++.+....-...+..|++++|++ +|++.+ .++.|.|+|
T Consensus       264 V~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD  328 (352)
T TIGR02658       264 LLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFD  328 (352)
T ss_pred             EEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEE
Confidence            854          22489999999999996655567899999999999 777666 577788875

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.38  E-value=3.7e-12  Score=139.15  Aligned_cols=164  Identities=17%  Similarity=0.272  Sum_probs=128.1

Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEE
Q 003271          589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRY  667 (835)
Q Consensus       589 ~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~i  667 (835)
                      ....+.+|.+.|.|+.|+.+|.+|++||.|-.+.|||.-..+.....-.+|...|.++.|.|. ++.++++|..|..|++
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            345788999999999999999999999999999999999777656677899999999999984 5668899999999999


Q ss_pred             EECCCCe----------eeeEee---cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEE-------E---EEcCCCC
Q 003271          668 WSINNGS----------CAGVFK---SGATQMRFQPRL-GRILAAAIENYISILDVETQVCR-------L---KLQGHKN  723 (835)
Q Consensus       668 wDl~s~~----------~~~~~~---~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i-------~---~l~~h~~  723 (835)
                      ||+...+          ....+.   ..+..++..|.+ ..+.+++.||.|+-||++....-       .   .+...--
T Consensus       122 fdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li  201 (758)
T KOG1310|consen  122 FDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI  201 (758)
T ss_pred             EecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence            9998522          222222   337778888888 77889999999999999863211       1   1111123


Q ss_pred             CeEEEEEcCCC-CEEEEEe-CCeEEEEEcCC
Q 003271          724 QVHSVCWNTSG-EYLASVS-DELVRVWSIGS  752 (835)
Q Consensus       724 ~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t  752 (835)
                      ...|+.++|.. .+|++|+ |-..++||.+.
T Consensus       202 elk~ltisp~rp~~laVGgsdpfarLYD~Rr  232 (758)
T KOG1310|consen  202 ELKCLTISPSRPYYLAVGGSDPFARLYDRRR  232 (758)
T ss_pred             eeeeeeecCCCCceEEecCCCchhhhhhhhh
Confidence            56788999865 5666676 88999999653

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.37  E-value=3.9e-11  Score=122.26  Aligned_cols=108  Identities=20%  Similarity=0.417  Sum_probs=88.6

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEE
Q 003271          721 HKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWN  794 (835)
Q Consensus       721 h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwD  794 (835)
                      ..++|.+++|+|+|+.++++.   +..|.+||++.    ..+..+.  ...+..+.|+|+|++|++++.+   |.|.+||
T Consensus        58 ~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd  131 (194)
T PF08662_consen   58 KEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----KKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWD  131 (194)
T ss_pred             CCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----cEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEE
Confidence            345799999999999876653   67999999962    5555554  5678899999999999998854   5799999


Q ss_pred             cCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC------CCcEEEeC
Q 003271          795 MTENKTLTLSAHDKLVSSLAASTVNGMVASASH------DKCVKIWK  835 (835)
Q Consensus       795 l~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~------DG~V~IWd  835 (835)
                      +++.+.+....|.. ++.++|+|||++|+++..      |..++||+
T Consensus       132 ~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~  177 (194)
T PF08662_consen  132 VRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSPRLRVDNGFKIWS  177 (194)
T ss_pred             CCCCEEeeccccCc-EEEEEEcCCCCEEEEEEeccceeccccEEEEE
Confidence            99988887766654 789999999999998874      78889985

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.37  E-value=4.1e-09  Score=111.88  Aligned_cols=264  Identities=13%  Similarity=0.098  Sum_probs=184.6

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCC--CeEE--EEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEE
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTES--FTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVW  624 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t--~~~i--~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IW  624 (835)
                      .+.+.++-++|+++.++|.++-.+   |.|..|.++.  |++.  ........+-+.|++++++++|+++.+ -|.|.++
T Consensus        37 ~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          37 AELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             cccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEE
Confidence            455678899999999999887654   7788777764  4443  222222233478999999999999876 4799999


Q ss_pred             ecCCCCcee--EEeecCCCC----------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe----e--cCceEE
Q 003271          625 DTENPDYSL--RTFTGHSTT----------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----K--SGATQM  686 (835)
Q Consensus       625 Dl~t~~~~~--~~~~~h~~~----------V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~--~~i~~l  686 (835)
                      -+.+.....  .....|.+.          +.+..+.|+++++++..-.--.|.+|++..++....-    +  .+...+
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi  196 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHI  196 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceE
Confidence            986533211  123335444          8899999998866655545568999999977654322    2  458899


Q ss_pred             EEecCCCEEEEEEc-CCcEEEEECCCC-eEEEEEcC---------CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003271          687 RFQPRLGRILAAAI-ENYISILDVETQ-VCRLKLQG---------HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG  753 (835)
Q Consensus       687 ~fsp~~~~ll~~s~-dg~I~IwDl~t~-~~i~~l~~---------h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~  753 (835)
                      .|+|++++.++.++ +++|.+|..... ..+..+..         ...+...|..++||++|+++.  .+.|.+|.+...
T Consensus       197 ~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~  276 (346)
T COG2706         197 VFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPD  276 (346)
T ss_pred             EEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCC
Confidence            99999999887775 799999998863 22222211         234677899999999999998  558999988765


Q ss_pred             CC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEc--CCCcEEEe--ccCCCCeeEEEEe
Q 003271          754 SK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM--TENKTLTL--SAHDKLVSSLAAS  816 (835)
Q Consensus       754 ~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl--~~~~~~~l--~~h~~~V~~la~s  816 (835)
                      .. ...+.....++.....+.|++++++|+++..++ .|.+|..  .+|++..+  ........||.|.
T Consensus       277 ~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~~~~~~~~~p~Pvcv~f~  345 (346)
T COG2706         277 GGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLTLLGRYAVVPEPVCVKFL  345 (346)
T ss_pred             CCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEEecccccCCCCcEEEEEc
Confidence            32 334444455566688999999999999999876 6777755  45655432  2344455666664

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=5.2e-10  Score=127.94  Aligned_cols=236  Identities=14%  Similarity=0.114  Sum_probs=157.6

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCE--E-EEEECCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCC
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR--L-ATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS  651 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~--L-atgs~Dg--~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~  651 (835)
                      +.|.+.|.+.+... .+......+.+-+|+|||+.  + ++...+|  .|.+.++.++..  ..+....+......|+||
T Consensus       165 ~~l~~~d~dG~~~~-~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~--~~lt~~~g~~~~p~wSPD  241 (428)
T PRK01029        165 GELWSVDYDGQNLR-PLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAG--KKILALQGNQLMPTFSPR  241 (428)
T ss_pred             ceEEEEcCCCCCce-EcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCc--eEeecCCCCccceEECCC
Confidence            36777777665443 34445566778899999875  2 3444443  577778887653  334444555667899999


Q ss_pred             CCcEEEEEeCCC----cEEEEECCCC---eeeeEee---cCceEEEEecCCCEEEEEEc-CCc--EEEEECCC-CeEEEE
Q 003271          652 KEDLLCSCDNNS----EIRYWSINNG---SCAGVFK---SGATQMRFQPRLGRILAAAI-ENY--ISILDVET-QVCRLK  717 (835)
Q Consensus       652 g~~ll~sgs~Dg----~I~iwDl~s~---~~~~~~~---~~i~~l~fsp~~~~ll~~s~-dg~--I~IwDl~t-~~~i~~  717 (835)
                      |+.++++.+.+|    .+.+|++..+   +......   ......+|+|+|..|+..+. ++.  |+++++.. +.....
T Consensus       242 G~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~  321 (428)
T PRK01029        242 KKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRL  321 (428)
T ss_pred             CCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEE
Confidence            998887775444    3344676653   3222232   22457899999998887764 554  55555542 233444


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeE
Q 003271          718 LQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETL  790 (835)
Q Consensus       718 l~~h~~~I~sl~fspdg~~Lasgs--D--g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I  790 (835)
                      +..+...+....|+|||+.|+..+  +  ..|.+||+.++.   . ..+......+....|+|+|+.|+..+.+   ..|
T Consensus       322 lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~---~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L  397 (428)
T PRK01029        322 LTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGR---D-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESEL  397 (428)
T ss_pred             eccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCC---e-EEccCCCCCccceEECCCCCEEEEEECCCCCceE
Confidence            544556678899999999998776  2  379999998873   2 2233233456788999999988876543   379


Q ss_pred             EEEEcCCCcEEEeccCCCCeeEEEEeCCC
Q 003271          791 ELWNMTENKTLTLSAHDKLVSSLAASTVN  819 (835)
Q Consensus       791 ~IwDl~~~~~~~l~~h~~~V~~la~spdg  819 (835)
                      ++||+.+++...+....+.+...+|+|-.
T Consensus       398 ~~vdl~~g~~~~Lt~~~g~~~~p~Ws~~~  426 (428)
T PRK01029        398 YLISLITKKTRKIVIGSGEKRFPSWGAFP  426 (428)
T ss_pred             EEEECCCCCEEEeecCCCcccCceecCCC
Confidence            99999998887666666777888898743

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=2.9e-10  Score=130.52  Aligned_cols=220  Identities=16%  Similarity=0.161  Sum_probs=150.0

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EECCC--eEE
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADR--TVR  622 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Lat-gs~Dg--~I~  622 (835)
                      +.+..+...+.+..|+|||+.|+..+.+   ..|.+||+.+++... +....+.+...+|+|||+.|+. .+.+|  .|+
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCCcCCeEECCCCCEEEEEEccCCCceEE
Confidence            3344667789999999999998876643   369999998886543 3333445667899999998874 44455  688


Q ss_pred             EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEee-c-CceEEEEecCCCEEEEE
Q 003271          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK-S-GATQMRFQPRLGRILAA  698 (835)
Q Consensus       623 IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~-~-~i~~l~fsp~~~~ll~~  698 (835)
                      +||+.++.  ...+..+........|+|+++.++++...++  .|+++|+.+++...... . ......|+|+++.++..
T Consensus       271 ~~d~~~~~--~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~  348 (430)
T PRK00178        271 VMDLASRQ--LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMV  348 (430)
T ss_pred             EEECCCCC--eEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEE
Confidence            88998765  3445556666777899999998887765554  57788888776543322 2 23456899999999887


Q ss_pred             EcCC---cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271          699 AIEN---YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS  771 (835)
Q Consensus       699 s~dg---~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~s  771 (835)
                      ..++   .|.++|+.++.......  ........|+|+|+.|+..+  ++  .|+++++...    ....+..+.+.+..
T Consensus       349 ~~~~~~~~l~~~dl~tg~~~~lt~--~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~----~~~~l~~~~g~~~~  422 (430)
T PRK00178        349 HRQDGNFHVAAQDLQRGSVRILTD--TSLDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR----VRLPLPTAQGEVRE  422 (430)
T ss_pred             EccCCceEEEEEECCCCCEEEccC--CCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC----ceEECcCCCCCcCC
Confidence            7542   58889998876543222  22233568999999998776  33  5677777433    22334344455666


Q ss_pred             EEEeCC
Q 003271          772 CVFHPT  777 (835)
Q Consensus       772 v~fspd  777 (835)
                      .+|+|-
T Consensus       423 p~ws~~  428 (430)
T PRK00178        423 PSWSPY  428 (430)
T ss_pred             CccCCC
Confidence            777763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=2.7e-10  Score=131.21  Aligned_cols=218  Identities=18%  Similarity=0.201  Sum_probs=146.1

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEE-EECCCe--EEEE
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT-SSADRT--VRVW  624 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Lat-gs~Dg~--I~IW  624 (835)
                      +..+...+.+..|+|||+.|+..+.+   ..|++||+.+++... +....+.....+|+|||+.|+. .+.++.  |++|
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~  291 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVV  291 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEE
Confidence            33456678899999999998876543   258899998876532 2222334457899999997765 456664  7777


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEe-ecC-ceEEEEecCCCEEEEEEc
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVF-KSG-ATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~-~~~-i~~l~fsp~~~~ll~~s~  700 (835)
                      |+.++.  ...+..+...+...+|+|+++.++++...++  .|+++|+.+++..... ... ....+|+|++++++..+.
T Consensus       292 dl~tg~--~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~  369 (448)
T PRK04792        292 DIATKA--LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNR  369 (448)
T ss_pred             ECCCCC--eEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEe
Confidence            887655  4455556566778899999998887776554  4777788777654432 222 345689999999888765


Q ss_pred             C-C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          701 E-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       701 d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      + +  .|.++|+.++.... +... .......|+|+|+.|+..+  ++  .+++++...    .....+..+.+.+...+
T Consensus       370 ~~g~~~I~~~dl~~g~~~~-lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~G----~~~~~l~~~~g~~~~p~  443 (448)
T PRK04792        370 TNGKFNIARQDLETGAMQV-LTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSIDG----RFKARLPAGQGEVKSPA  443 (448)
T ss_pred             cCCceEEEEEECCCCCeEE-ccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECCC----CceEECcCCCCCcCCCc
Confidence            4 3  46678888876543 2222 1223458999999888766  34  477777643    34444544555667778


Q ss_pred             EeCC
Q 003271          774 FHPT  777 (835)
Q Consensus       774 fspd  777 (835)
                      |+|-
T Consensus       444 Wsp~  447 (448)
T PRK04792        444 WSPF  447 (448)
T ss_pred             cCCC
Confidence            8763

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.32  E-value=3.9e-11  Score=140.56  Aligned_cols=262  Identities=16%  Similarity=0.251  Sum_probs=182.5

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe------ccCC--CCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL------EEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l------~~h~--~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      +++++..+-.  +||++|. .-.|.+||+..+..+..+      ..|.  +.+.     -.+.+++++..-+.+.+=+..
T Consensus         8 ~~l~~~~~~~--~~llag~-gp~i~~yd~~s~~li~~~~~~~~~~~H~~e~~~~-----l~~~~~v~~~~~~~v~~~~~~   79 (967)
T KOG0974|consen    8 GPLNLPQLVS--DYLLAGS-GPEILVYDLSSGCLIRHLIQSKILEVHRGEGKVK-----LLSGKIVTCAKSDEVYVKEAS   79 (967)
T ss_pred             ccccchhhcc--ceeeecC-CCceEEeeCCchhHhhhhhhhcccccccccccce-----eccceEEEEEeecceeecchh
Confidence            4455555544  4666554 457999999887765443      2341  0010     123455555544434333222


Q ss_pred             CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce-------EEEEecCCCEEEEEEc
Q 003271          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT-------QMRFQPRLGRILAAAI  700 (835)
Q Consensus       628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~-------~l~fsp~~~~ll~~s~  700 (835)
                      ...  ...+.   ..|....+..+.. .++....+..+.+||...+.....+.+.-.       -+.++++.=++++|+.
T Consensus        80 ~~~--~~~~s---~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv  153 (967)
T KOG0974|consen   80 NQI--IERFS---DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSV  153 (967)
T ss_pred             hhh--hhhcc---ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccc
Confidence            111  12222   2233334444434 455566688999999988877665554322       2234555567888888


Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271          701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  779 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~  779 (835)
                      -+.|.+|+......-..+.+|.+.|.++.|+.||+++++++ |.++++|++.+.+...  ...-+|...|+.++|+|+  
T Consensus       154 ~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~--~~~fgHsaRvw~~~~~~n--  229 (967)
T KOG0974|consen  154 FGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG--CTGFGHSARVWACCFLPN--  229 (967)
T ss_pred             cccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC--cccccccceeEEEEeccc--
Confidence            89999999884444446889999999999999999999999 8899999999984322  356689999999999999  


Q ss_pred             EEEEEEcCCeEEEEEcCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          780 SLLVIGCYETLELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       780 ~L~sgs~dg~I~IwDl~~~~~~~l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|++++.|-+.++|+.+...+..+..|. ..|..++..++...++|++.||.+++|+
T Consensus       230 ~i~t~gedctcrvW~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~  286 (967)
T KOG0974|consen  230 RIITVGEDCTCRVWGVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWD  286 (967)
T ss_pred             eeEEeccceEEEEEecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhh
Confidence            8999999999999987666665666775 5699999999999999999999999996

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.31  E-value=5.7e-10  Score=127.34  Aligned_cols=203  Identities=15%  Similarity=0.194  Sum_probs=145.5

Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--CcEEEEECCCCeeeeE--eecCceEEEEecCCCE
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--SEIRYWSINNGSCAGV--FKSGATQMRFQPRLGR  694 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D--g~I~iwDl~s~~~~~~--~~~~i~~l~fsp~~~~  694 (835)
                      ..|.++|.....  .+.+..+...+.+.+|+|+++.++++...+  ..|++||+.+++....  +......++|+|+++.
T Consensus       170 ~~l~~~d~~g~~--~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~  247 (417)
T TIGR02800       170 YELQVADYDGAN--PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSK  247 (417)
T ss_pred             ceEEEEcCCCCC--CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCE
Confidence            368888876433  455666777899999999999877665433  4799999998765433  3344667899999998


Q ss_pred             EEEEE-cC--CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCC
Q 003271          695 ILAAA-IE--NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       695 ll~~s-~d--g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                      |++.. .+  ..|++||+.++.... +..+........|+|+|+.|+.++  ++  .|+++|+.++.    ...+..+..
T Consensus       248 l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~----~~~l~~~~~  322 (417)
T TIGR02800       248 LAVSLSKDGNPDIYVMDLDGKQLTR-LTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE----VRRLTFRGG  322 (417)
T ss_pred             EEEEECCCCCccEEEEECCCCCEEE-CCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC----EEEeecCCC
Confidence            87654 33  359999998775433 333445556789999999888766  33  68888887652    233444456


Q ss_pred             ceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271          768 KFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      .+..+.|+|++++|+.++.++   .|++||+.++....+... ......+|+||+++|+.++.++
T Consensus       323 ~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~spdg~~l~~~~~~~  386 (417)
T TIGR02800       323 YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDT-GLDESPSFAPNGRMILYATTRG  386 (417)
T ss_pred             CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCC-CCCCCceECCCCCEEEEEEeCC
Confidence            677889999999999988876   899999988766544433 2345678999999888777654

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.30  E-value=1.6e-10  Score=117.75  Aligned_cols=149  Identities=13%  Similarity=0.295  Sum_probs=111.5

Q ss_pred             EEEEECCCCCEEEEEEC----------CCeEEEEecCCCCceeEEeec-CCCCeEEEEEcCCCCcEEEE-EeCCCcEEEE
Q 003271          601 TDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTG-HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYW  668 (835)
Q Consensus       601 ~sv~fspdg~~Latgs~----------Dg~I~IWDl~t~~~~~~~~~~-h~~~V~sl~fsp~g~~ll~s-gs~Dg~I~iw  668 (835)
                      ..+.|+++|.+|++-..          -+...||.++........+.- ..++|.+++|+|+++.+++. |..++.|.+|
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~ly   88 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLY   88 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEE
Confidence            46788999887765433          234666666544433444432 34579999999999877544 5567899999


Q ss_pred             ECCCCeeeeEee-cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---
Q 003271          669 SINNGSCAGVFK-SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---  741 (835)
Q Consensus       669 Dl~s~~~~~~~~-~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---  741 (835)
                      |++ ++.+..+. .....+.|+|+|+++++++.+   |.|.+||+++.+.+..+. | ..++.++|+|+|++|+++.   
T Consensus        89 d~~-~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-~-~~~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   89 DVK-GKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-H-SDATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             cCc-ccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-c-CcEEEEEEcCCCCEEEEEEecc
Confidence            997 55555554 457889999999999998754   679999999988887775 3 3478999999999999875   


Q ss_pred             ----CCeEEEEEcCC
Q 003271          742 ----DELVRVWSIGS  752 (835)
Q Consensus       742 ----Dg~I~IwDl~t  752 (835)
                          |+.++||++..
T Consensus       166 r~~~dng~~Iw~~~G  180 (194)
T PF08662_consen  166 RLRVDNGFKIWSFQG  180 (194)
T ss_pred             ceeccccEEEEEecC
Confidence                56889999853

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.29  E-value=8.3e-10  Score=126.32  Aligned_cols=213  Identities=12%  Similarity=0.094  Sum_probs=139.8

Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc--EEEEEeCCC--cEEEEECCCCeee--eEeecCceEEEEecCC
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED--LLCSCDNNS--EIRYWSINNGSCA--GVFKSGATQMRFQPRL  692 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~--ll~sgs~Dg--~I~iwDl~s~~~~--~~~~~~i~~l~fsp~~  692 (835)
                      ..|.+.|.+...  .+.+......+.+-.|+|||+.  ++++...++  .|++.++..++..  ..+.+.....+|+|+|
T Consensus       165 ~~l~~~d~dG~~--~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~~~~p~wSPDG  242 (428)
T PRK01029        165 GELWSVDYDGQN--LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGNQLMPTFSPRK  242 (428)
T ss_pred             ceEEEEcCCCCC--ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCCccceEECCCC
Confidence            357777776543  3445555566778899999976  333454443  6888899877543  3345566778999999


Q ss_pred             CEEEEEEc-CC----cEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCe--EEEEEcCCCCCcceEE
Q 003271          693 GRILAAAI-EN----YISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGECIH  760 (835)
Q Consensus       693 ~~ll~~s~-dg----~I~IwDl~t~---~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~--I~IwDl~t~~~~~~i~  760 (835)
                      +.|+..+. +|    .+.+|++..+   ........+.......+|+|||+.|+..+  ++.  |+++++....  ....
T Consensus       243 ~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g--~~~~  320 (428)
T PRK01029        243 KLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG--QSPR  320 (428)
T ss_pred             CEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc--cceE
Confidence            99887764 22    3444676642   33333332333456789999999888776  564  4444543221  2233


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC-C--CcEEEe
Q 003271          761 ELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-D--KCVKIW  834 (835)
Q Consensus       761 ~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~-D--G~V~IW  834 (835)
                      .+......+....|+|||+.|+..+.+   ..|++||+.+++...+......+....|+|||+.|+.... +  ..|++|
T Consensus       321 ~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~v  400 (428)
T PRK01029        321 LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLI  400 (428)
T ss_pred             EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEECCCCCceEEEE
Confidence            344444567788999999999887654   3799999999988766655556788999999997775443 2  345555


Q ss_pred             C
Q 003271          835 K  835 (835)
Q Consensus       835 d  835 (835)
                      |
T Consensus       401 d  401 (428)
T PRK01029        401 S  401 (428)
T ss_pred             E
Confidence            3

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.29  E-value=5.1e-10  Score=124.65  Aligned_cols=202  Identities=17%  Similarity=0.261  Sum_probs=155.7

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCeEEEEecc---CCCCeEEEEEC------C--------------CCCEEEEEECCCeE
Q 003271          565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEE---HTQWITDVRFS------P--------------SLSRLATSSADRTV  621 (835)
Q Consensus       565 pdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~---h~~~V~sv~fs------p--------------dg~~Latgs~Dg~I  621 (835)
                      |-..|+|....||.++||++.+++....+..   -++..++..|.      |              +...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456899999999999999999887766532   23344455542      1              33467888889999


Q ss_pred             EEEecCCCCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEE
Q 003271          622 RVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILA  697 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~  697 (835)
                      .+|++..++...+.. ..|.+.|.++.++.+- .+|.+++.|+.+.+|+......++.+++.   +..++++||++.+++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            999999887533333 4689999999988764 47889999999999999999988888754   888999999998888


Q ss_pred             EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC-----CCEEEEEe--CCeEEEEEcCCC-CCcceEEEeecCCCce
Q 003271          698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS-----GEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKF  769 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd-----g~~Lasgs--Dg~I~IwDl~t~-~~~~~i~~l~~~~~~V  769 (835)
                      ++  +.|.+||+++++.+..|.+|.++|.++.|-.+     |.++.++.  +..+.+|-+... +.......+....-++
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~~kkks~~~sl~~~dipv  239 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKEDKKKSLSCSLTVPDIPV  239 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEcccccchhheeeccCCCCe
Confidence            76  68999999999999999999999999999776     78888776  667888877653 2223333444434333

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.29  E-value=5.5e-09  Score=117.77  Aligned_cols=252  Identities=11%  Similarity=0.036  Sum_probs=160.9

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEE-EEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe-
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-  643 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~s-v~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V-  643 (835)
                      ++..+++++.++.|+.+|..+++.+....... .+.+ ...  .+..++.++.++.|..||..+++. +..+......+ 
T Consensus       104 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~-~~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~-~W~~~~~~~~~~  179 (377)
T TIGR03300       104 DGGLVFVGTEKGEVIALDAEDGKELWRAKLSS-EVLSPPLV--ANGLVVVRTNDGRLTALDAATGER-LWTYSRVTPALT  179 (377)
T ss_pred             cCCEEEEEcCCCEEEEEECCCCcEeeeeccCc-eeecCCEE--ECCEEEEECCCCeEEEEEcCCCce-eeEEccCCCcee
Confidence            46678888899999999999999887664332 2222 112  245677788899999999998875 33222211111 


Q ss_pred             ----EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc----------eEEE--EecCCCEEEEEEcCCcEEEE
Q 003271          644 ----MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA----------TQMR--FQPRLGRILAAAIENYISIL  707 (835)
Q Consensus       644 ----~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i----------~~l~--fsp~~~~ll~~s~dg~I~Iw  707 (835)
                          .+..+. + . .++.+..++.+..+|.++++.+.......          ..+.  ..-.++.+++++.++.++.|
T Consensus       180 ~~~~~sp~~~-~-~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~  256 (377)
T TIGR03300       180 LRGSASPVIA-D-G-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAAL  256 (377)
T ss_pred             ecCCCCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEE
Confidence                111122 2 2 45677778999999999998765432110          0000  01135788889999999999


Q ss_pred             ECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEE
Q 003271          708 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       708 Dl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs  785 (835)
                      |..+++.+..... . .......  ++..|++++ +|.|..+|..++   +.+...... .....+...  .+..|++++
T Consensus       257 d~~tG~~~W~~~~-~-~~~~p~~--~~~~vyv~~~~G~l~~~d~~tG---~~~W~~~~~~~~~~ssp~i--~g~~l~~~~  327 (377)
T TIGR03300       257 DLRSGRVLWKRDA-S-SYQGPAV--DDNRLYVTDADGVVVALDRRSG---SELWKNDELKYRQLTAPAV--VGGYLVVGD  327 (377)
T ss_pred             ECCCCcEEEeecc-C-CccCceE--eCCEEEEECCCCeEEEEECCCC---cEEEccccccCCccccCEE--ECCEEEEEe
Confidence            9999988776652 1 1222222  345566666 999999999887   444333211 112222222  356899999


Q ss_pred             cCCeEEEEEcCCCcEE-EeccCCCCe-eEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          786 CYETLELWNMTENKTL-TLSAHDKLV-SSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       786 ~dg~I~IwDl~~~~~~-~l~~h~~~V-~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+|.|+++|..+++.+ .+..+...+ ....+. + +.|+.++.||.|+.|.
T Consensus       328 ~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~~  377 (377)
T TIGR03300       328 FEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAFR  377 (377)
T ss_pred             CCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEeC
Confidence            9999999999999988 444444333 333333 3 3588889999998763

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.27  E-value=9.9e-10  Score=120.85  Aligned_cols=269  Identities=13%  Similarity=0.185  Sum_probs=183.0

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeC-----------CCeEEEEEcCCCeEEEEeccC--CCCeE-EEEECCCCCEEEEEECCC
Q 003271          554 STSKVESCHFSPDGKLLATGGH-----------DKKAVLWCTESFTVKSTLEEH--TQWIT-DVRFSPSLSRLATSSADR  619 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~-----------Dg~I~VWd~~t~~~i~~l~~h--~~~V~-sv~fspdg~~Latgs~Dg  619 (835)
                      |.+ |.-+.|||..+||+|-+.           ...++|||+.+|...+.+...  ...++ -+.||.|++++|--..| 
T Consensus       249 Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-  326 (698)
T KOG2314|consen  249 HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-  326 (698)
T ss_pred             CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEeccc-
Confidence            444 888999999999999652           257999999999998887652  22333 46899999999877664 


Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEee---cCceEEEEecC
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK---SGATQMRFQPR  691 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~  691 (835)
                      .|.||+..+-. .+....-.-..|....|+|.+. +|+-=.     .-..+.+-.+.++..+++-.   ..-..+.|..+
T Consensus       327 sisIyEtpsf~-lld~Kslki~gIr~FswsP~~~-llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~  404 (698)
T KOG2314|consen  327 SISIYETPSFM-LLDKKSLKISGIRDFSWSPTSN-LLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKS  404 (698)
T ss_pred             eEEEEecCcee-eecccccCCccccCcccCCCcc-eEEEEcccccCCcceEEEEecCccceeeeccceeeeccEEEeccC
Confidence            69999877522 1222222335688899999865 443221     12356666666666555433   33455678888


Q ss_pred             CCEEEEEEc-------C---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcC-CCCCc
Q 003271          692 LGRILAAAI-------E---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIG-SGSKG  756 (835)
Q Consensus       692 ~~~ll~~s~-------d---g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~-t~~~~  756 (835)
                      |++|++-..       .   ..+.|+.++..........-...|...+|.|.|..+++-+    ..++.+|.+. +....
T Consensus       405 gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~  484 (698)
T KOG2314|consen  405 GDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKP  484 (698)
T ss_pred             CcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCch
Confidence            887776432       1   2355666665443333333567889999999998877655    3489999988 44444


Q ss_pred             ceEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEEcCCCc--EEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271          757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK--TLTLSAHDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~---dg~I~IwDl~~~~--~~~l~~h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      ..+..+..  ...+.+.|+|.|+++++++-   .|.+.+||+.-..  .+....|. ..+.+.|.|.|+|++|++.-.
T Consensus       485 ~lVk~~dk--~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~-~at~veWDPtGRYvvT~ss~w  559 (698)
T KOG2314|consen  485 SLVKELDK--KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHF-AATEVEWDPTGRYVVTSSSSW  559 (698)
T ss_pred             hhhhhhcc--cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcccc-ccccceECCCCCEEEEeeehh
Confidence            45555543  56788999999999988754   5699999998533  33444553 457899999999999998643

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.26  E-value=9.7e-09  Score=109.05  Aligned_cols=258  Identities=11%  Similarity=0.139  Sum_probs=181.4

Q ss_pred             CCeEEEEEcCCC--eEE-EEeccCCCCeEEEEECCCCCEEEEEECC---CeEEEEecCCCCceeEEe---ecCCCCeEEE
Q 003271          576 DKKAVLWCTESF--TVK-STLEEHTQWITDVRFSPSLSRLATSSAD---RTVRVWDTENPDYSLRTF---TGHSTTVMSL  646 (835)
Q Consensus       576 Dg~I~VWd~~t~--~~i-~~l~~h~~~V~sv~fspdg~~Latgs~D---g~I~IWDl~t~~~~~~~~---~~h~~~V~sl  646 (835)
                      +.-|++|++++.  +.. ..+-.+.+.++-++|+|+.++|+++-.+   |.|..|.++.....+..+   .....+.+.+
T Consensus        15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yv   94 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYV   94 (346)
T ss_pred             CCceEEEEEeCcccccchhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEE
Confidence            567999998742  211 1223466778999999999999988654   778888887532212222   1122344889


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE---ee------------cCceEEEEecCCCEEEEEEcC-CcEEEEEC
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV---FK------------SGATQMRFQPRLGRILAAAIE-NYISILDV  709 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~---~~------------~~i~~l~fsp~~~~ll~~s~d-g~I~IwDl  709 (835)
                      +++++++.++++....|.|.++-+.. |.....   +.            .++....+.|+++++++.... ..|.+|++
T Consensus        95 svd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~  174 (346)
T COG2706          95 SVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDL  174 (346)
T ss_pred             EECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEc
Confidence            99999998888888889999999965 432211   11            226778899999999988764 78999999


Q ss_pred             CCCeEEE----EEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCcceEEEeec------CCCceEEEEEeC
Q 003271          710 ETQVCRL----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSC------TGNKFHSCVFHP  776 (835)
Q Consensus       710 ~t~~~i~----~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~-~~~~~i~~l~~------~~~~V~sv~fsp  776 (835)
                      ..+....    .+ ......+.|.|+|++++.++..  +++|.+|.+... ...+.+..+..      .......+.+++
T Consensus       175 ~dg~L~~~~~~~v-~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~  253 (346)
T COG2706         175 DDGKLTPADPAEV-KPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISP  253 (346)
T ss_pred             ccCcccccccccc-CCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECC
Confidence            9765432    22 2456678999999999999888  999999999874 22233333322      235577889999


Q ss_pred             CCCEEEEEEcC-CeEEEEEcCC--CcEE---EeccCCCCeeEEEEeCCCCEEEEEECCC-cEEEe
Q 003271          777 TFPSLLVIGCY-ETLELWNMTE--NKTL---TLSAHDKLVSSLAASTVNGMVASASHDK-CVKIW  834 (835)
Q Consensus       777 dg~~L~sgs~d-g~I~IwDl~~--~~~~---~l~~h~~~V~~la~spdg~~LaSgs~DG-~V~IW  834 (835)
                      +|++|+++... ..|.+|.+..  +++.   ....+....+.+.|++.+++|+++..|+ .|.+|
T Consensus       254 dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf  318 (346)
T COG2706         254 DGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVF  318 (346)
T ss_pred             CCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEE
Confidence            99999888764 3788887754  3332   3334555589999999999999888654 56665

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.24  E-value=5.1e-08  Score=107.23  Aligned_cols=232  Identities=12%  Similarity=0.144  Sum_probs=148.0

Q ss_pred             EeCCCCEEEEEeC----------CCeEEEEEcCCCeEEEEeccCC-------CCeEEEEECCCCCEEEEEEC--CCeEEE
Q 003271          563 FSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLSRLATSSA--DRTVRV  623 (835)
Q Consensus       563 fSpdg~~Lasgs~----------Dg~I~VWd~~t~~~i~~l~~h~-------~~V~sv~fspdg~~Latgs~--Dg~I~I  623 (835)
                      +||||+.|+++..          +..|.|||+.+++.+..+....       .....++++|||++|++...  +..|.|
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~V  132 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGV  132 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEE
Confidence            9999998877655          7899999999999998886422       23347899999999998763  689999


Q ss_pred             EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Ceee-e---EeecC---c-eEEEEec-CCC
Q 003271          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA-G---VFKSG---A-TQMRFQP-RLG  693 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~-~---~~~~~---i-~~l~fsp-~~~  693 (835)
                      +|+.+++. +..+.- .+...-...+++ .+++ .| .||......+.+ ++.. .   .+...   + ..-.|.+ ++.
T Consensus       133 vD~~~~kv-v~ei~v-p~~~~vy~t~e~-~~~~-~~-~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~  207 (352)
T TIGR02658       133 VDLEGKAF-VRMMDV-PDCYHIFPTAND-TFFM-HC-RDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGR  207 (352)
T ss_pred             EECCCCcE-EEEEeC-CCCcEEEEecCC-ccEE-Ee-ecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCc
Confidence            99998775 333332 112222222222 1111 12 244444333322 1111 1   11110   0 0114456 555


Q ss_pred             EEEEEEcCCcEEEEECCCC-----eEEEEEcC-------CCCCeEEEEEcCCCCEEEEEe-----------CCeEEEEEc
Q 003271          694 RILAAAIENYISILDVETQ-----VCRLKLQG-------HKNQVHSVCWNTSGEYLASVS-----------DELVRVWSI  750 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~-----~~i~~l~~-------h~~~I~sl~fspdg~~Lasgs-----------Dg~I~IwDl  750 (835)
                      .+++... |.|++.|+...     .....+..       ..+.+.-++++++++.++...           .+.|.++|.
T Consensus       208 ~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~  286 (352)
T TIGR02658       208 LVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDA  286 (352)
T ss_pred             EEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEEC
Confidence            5555444 99999996432     22222211       233444599999998888742           258999999


Q ss_pred             CCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEEcCCCcEEEec
Q 003271          751 GSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS  804 (835)
Q Consensus       751 ~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l~  804 (835)
                      .+.   +.+..+.. +..+..++++||++ .|++.. .++.|.++|..+++.+...
T Consensus       287 ~t~---kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       287 KTG---KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             CCC---eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            887   66666654 56899999999999 787777 4678999999999887443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.23  E-value=1.2e-09  Score=122.60  Aligned_cols=274  Identities=15%  Similarity=0.204  Sum_probs=196.6

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC---------------eEEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF---------------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---------------~~i~~l~~h~~~V~sv~fspdg~~Latgs~D  618 (835)
                      ......|++|+....|+|+|+.||.++|..+.+.               ..-.++.+|.+.|.-+.|+.+...|-|+..+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            4456899999999999999999999999976532               1225678999999999999999999999999


Q ss_pred             CeEEEEecCCCCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEeec-CceEEEEecCCCEE
Q 003271          619 RTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFKS-GATQMRFQPRLGRI  695 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~~~-~i~~l~fsp~~~~l  695 (835)
                      |.|.||-+-.+..+...+ ....+.|.+++|..+|. -++....||.|.+=.++..+.- +.+++ ....+.|++|...+
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~-kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~  171 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGT-KICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA  171 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCc-EEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence            999999988776533222 23456789999999987 4557778999888777654432 22332 25678899999999


Q ss_pred             EEEEcCCcEEEEECCCC-------eEEEE----EcCCCCCeEEEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCC
Q 003271          696 LAAAIENYISILDVETQ-------VCRLK----LQGHKNQVHSVCWN--------TSGEYLASVS-DELVRVWSIGSGSK  755 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t~-------~~i~~----l~~h~~~I~sl~fs--------pdg~~Lasgs-Dg~I~IwDl~t~~~  755 (835)
                      +.+-..|.+.+||....       .+...    +......|..++|.        |+...|+.+. .|.+.|..-.+...
T Consensus       172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~  251 (1189)
T KOG2041|consen  172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPE  251 (1189)
T ss_pred             HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCC
Confidence            99989999999998642       12111    22233456777774        4667788887 78888776554432


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---------eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          756 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       756 ~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---------~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                      ...+    ..+-.+..+.|+++|..|++++.+.         .|.+|..-....-++......|++++|-..|-.++.+ 
T Consensus       252 Pvv~----dtgm~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~~It~lsWEg~gLriA~A-  326 (1189)
T KOG2041|consen  252 PVVV----DTGMKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGSCITGLSWEGTGLRIAIA-  326 (1189)
T ss_pred             CeEE----ecccEeecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCceeeeeEEcCCceEEEEE-
Confidence            2222    2246788999999999999998753         5666654433334667777889999997766555544 


Q ss_pred             CCCcEEE
Q 003271          827 HDKCVKI  833 (835)
Q Consensus       827 ~DG~V~I  833 (835)
                      .|+.|++
T Consensus       327 vdsfiyf  333 (1189)
T KOG2041|consen  327 VDSFIYF  333 (1189)
T ss_pred             ecceEEE
Confidence            3555543

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.22  E-value=4.8e-09  Score=116.20  Aligned_cols=213  Identities=10%  Similarity=0.160  Sum_probs=143.3

Q ss_pred             CCCCeEEEEECCCCC--EEEE-----EECCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEe--CC--
Q 003271          596 HTQWITDVRFSPSLS--RLAT-----SSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NN--  662 (835)
Q Consensus       596 h~~~V~sv~fspdg~--~Lat-----gs~Dg~I~IWDl~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs--~D--  662 (835)
                      |...|+.+.++|.+.  .||+     .+.-..|+||.+.....  .+..-.-....-..+.|++.|.-+|+..+  -|  
T Consensus       164 ~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDkt  243 (566)
T KOG2315|consen  164 SVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKT  243 (566)
T ss_pred             eccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCC
Confidence            566788888887632  3333     23446788887762211  11111111223345678877776665443  22  


Q ss_pred             -------CcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEE--cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 003271          663 -------SEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAA--IENYISILDVETQVCRLKLQGHKNQVHSVCWN  731 (835)
Q Consensus       663 -------g~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s--~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs  731 (835)
                             .++++.++...++.-.+  .++|.++.|++++..++++.  .-..+.|||++ +.++..+  ..++-.++-|+
T Consensus       244 n~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fn  320 (566)
T KOG2315|consen  244 NASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFN  320 (566)
T ss_pred             CccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEEC
Confidence                   37888888855554444  37799999999998776644  45789999997 4455555  45677899999


Q ss_pred             CCCCEEEEEe----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc------CCeEEEEEcCCCcEE
Q 003271          732 TSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC------YETLELWNMTENKTL  801 (835)
Q Consensus       732 pdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~------dg~I~IwDl~~~~~~  801 (835)
                      |.|++|+.++    -|.|.|||+.+.   +++..+...  ..+-+.|+|||.+|++++.      |+.++||++....+.
T Consensus       321 p~g~ii~lAGFGNL~G~mEvwDv~n~---K~i~~~~a~--~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG~~l~  395 (566)
T KOG2315|consen  321 PHGNIILLAGFGNLPGDMEVWDVPNR---KLIAKFKAA--NTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTGSLLH  395 (566)
T ss_pred             CCCCEEEEeecCCCCCceEEEeccch---hhccccccC--CceEEEEcCCCcEEEEEeccccEEecCCeEEEEecCceee
Confidence            9999999887    579999999886   677666643  3466899999999999987      568999998665443


Q ss_pred             EeccCCCCeeEEEEeC
Q 003271          802 TLSAHDKLVSSLAAST  817 (835)
Q Consensus       802 ~l~~h~~~V~~la~sp  817 (835)
                      .. ........++|-|
T Consensus       396 ~~-~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  396 EK-MFKSELLQVEWRP  410 (566)
T ss_pred             hh-hhhHhHhheeeee
Confidence            21 1122566777765

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.21  E-value=7.5e-11  Score=128.64  Aligned_cols=279  Identities=15%  Similarity=0.214  Sum_probs=194.6

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-------CeEEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D  618 (835)
                      -....+.||..+|..++--.+.+-+++++.|++|++|.++.       ..+..++..|+.+|.++.|-.+.++++++  |
T Consensus       726 irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D  803 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--D  803 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--c
Confidence            34567789999999998877888899999999999998753       34667888999999999999998887764  7


Q ss_pred             CeEEEEecCCCCceeEE----eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--------cCceEE
Q 003271          619 RTVRVWDTENPDYSLRT----FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------SGATQM  686 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~----~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--------~~i~~l  686 (835)
                      |.|.+||.--++.....    ..+..+.|.|+.- -+...+++.|+...+|+++|.+..+.+..++        .-+.++
T Consensus       804 ~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~n-v~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i  882 (1034)
T KOG4190|consen  804 GGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLEN-VDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI  882 (1034)
T ss_pred             CcceeecccccchhHhhhcCcccCCCceeEeccc-CcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence            88999997655431111    1122234444431 1334456666889999999999987766554        227789


Q ss_pred             EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEE-EEcCCCCCcceEEEeec
Q 003271          687 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV-WSIGSGSKGECIHELSC  764 (835)
Q Consensus       687 ~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~I-wDl~t~~~~~~i~~l~~  764 (835)
                      ++.+.|++++++-..|.|.+.|.++++.+..+.........++ .|....|+... |.++.| |..-.+   ......+.
T Consensus       883 aVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldg---imh~q~kp  958 (1034)
T KOG4190|consen  883 AVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDG---IMHLQDKP  958 (1034)
T ss_pred             EeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCC---eeeeccCC
Confidence            9999999999999999999999999998887765554444444 35556666655 888888 876554   22222222


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC-CC------cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMT-EN------KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       765 ~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~-~~------~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      ...+...  .-.-|+.|++......+.+|--. ..      ..++.....+..++++.-|-+.-++.|...|.|.+
T Consensus       959 ppepahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen  959 PPEPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             CCcchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeeccccchhhccCCCCceee
Confidence            2222111  12235667777777778887421 11      11223345677888888887777888888888875

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.20  E-value=1.1e-09  Score=114.57  Aligned_cols=237  Identities=16%  Similarity=0.279  Sum_probs=163.9

Q ss_pred             cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCC------------CCCEEEEEEeCCCC
Q 003271          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS------------TSKVESCHFSPDGK  568 (835)
Q Consensus       501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH------------~~~V~sl~fSpdg~  568 (835)
                      .++....++++|..+|.|.+|-......+              .+.....+..|            ..+|..+.|.+++.
T Consensus        32 ef~~~Ge~LatGdkgGRVv~f~r~~~~~~--------------ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n   97 (433)
T KOG1354|consen   32 EFDHYGERLATGDKGGRVVLFEREKLYKG--------------EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGN   97 (433)
T ss_pred             EeecccceEeecCCCCeEEEeeccccccc--------------ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCC
Confidence            34445589999999999999933222111              12222222233            24688999998765


Q ss_pred             --EEEEEeCCCeEEEEEcCCCeEE-----------------------------------EEe-ccCCCCeEEEEECCCCC
Q 003271          569 --LLATGGHDKKAVLWCTESFTVK-----------------------------------STL-EEHTQWITDVRFSPSLS  610 (835)
Q Consensus       569 --~Lasgs~Dg~I~VWd~~t~~~i-----------------------------------~~l-~~h~~~V~sv~fspdg~  610 (835)
                        .++..+.|++|++|.+......                                   +.+ ..|+.-|.+|.++.|..
T Consensus        98 ~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~E  177 (433)
T KOG1354|consen   98 LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKE  177 (433)
T ss_pred             ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccc
Confidence              4667778999999976431110                                   111 25888899999999998


Q ss_pred             EEEEEECCCeEEEEecCCCCceeEE--eecC-----CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee----eEe
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRT--FTGH-----STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA----GVF  679 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~--~~~h-----~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~----~~~  679 (835)
                      .++++ .|-.|.+|+++-...+...  ++.+     ..-|++..|+|..-.+++-.+..|+|++.|++.....    +.+
T Consensus       178 t~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlf  256 (433)
T KOG1354|consen  178 TFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLF  256 (433)
T ss_pred             eEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhh
Confidence            88887 5778999998754433322  2222     2458899999988888888888999999999843211    111


Q ss_pred             ---------------ecCceEEEEecCCCEEEEEEcCCcEEEEECC-CCeEEEEEcCCCC------------C---eEEE
Q 003271          680 ---------------KSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLKLQGHKN------------Q---VHSV  728 (835)
Q Consensus       680 ---------------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~------------~---I~sl  728 (835)
                                     -..+..+.|+..|+++++-.. -+|++||+. ..+++.++.-|..            .   -..+
T Consensus       257 Eepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec  335 (433)
T KOG1354|consen  257 EEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFEC  335 (433)
T ss_pred             ccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEE
Confidence                           134788999999998876443 789999994 4566665554431            2   2457


Q ss_pred             EEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271          729 CWNTSGEYLASVS-DELVRVWSIGSG  753 (835)
Q Consensus       729 ~fspdg~~Lasgs-Dg~I~IwDl~t~  753 (835)
                      +|+.++.++.+|+ .+.+++|++..+
T Consensus       336 ~~sg~~~~v~TGsy~n~frvf~~~~g  361 (433)
T KOG1354|consen  336 SWSGNDSYVMTGSYNNVFRVFNLARG  361 (433)
T ss_pred             EEcCCcceEecccccceEEEecCCCC
Confidence            8999999999999 889999997655

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.19  E-value=1.3e-09  Score=127.95  Aligned_cols=145  Identities=22%  Similarity=0.374  Sum_probs=120.0

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      .+=++++|+.-+.+-+|....+..+                  + .+.||.+.|.++.|+.||+++++.+.|.++++|++
T Consensus       144 ~~~~i~~gsv~~~iivW~~~~dn~p------------------~-~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i  204 (967)
T KOG0974|consen  144 EELYIASGSVFGEIIVWKPHEDNKP------------------I-RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPI  204 (967)
T ss_pred             cEEEEEeccccccEEEEeccccCCc------------------c-eecccCCceEEEEEccCCcEEEEEecCcceeeeec
Confidence            3457888888899999955422111                  1 57899999999999999999999999999999999


Q ss_pred             CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCCcEEEEEeCC
Q 003271          585 ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       585 ~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      ++.+... +.-+|+..|+.++|.|+  .++|++.|.++++|+.+...  +..+.+|. ..|..++..++ ..++++++.|
T Consensus       205 ~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~--l~~y~~h~g~~iw~~~~~~~-~~~~vT~g~D  279 (967)
T KOG0974|consen  205 DSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ--LEVYDEHSGKGIWKIAVPIG-VIIKVTGGND  279 (967)
T ss_pred             ccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecccce--ehhhhhhhhcceeEEEEcCC-ceEEEeeccC
Confidence            9988775 66689999999999998  99999999999999776533  45777775 46888888776 5688899999


Q ss_pred             CcEEEEECCCC
Q 003271          663 SEIRYWSINNG  673 (835)
Q Consensus       663 g~I~iwDl~s~  673 (835)
                      +.+++||+...
T Consensus       280 s~lk~~~l~~r  290 (967)
T KOG0974|consen  280 STLKLWDLNGR  290 (967)
T ss_pred             cchhhhhhhcc
Confidence            99999998653

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.17  E-value=9.7e-10  Score=112.96  Aligned_cols=197  Identities=20%  Similarity=0.261  Sum_probs=149.7

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE--EeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCCce-
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYS-  632 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~--~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~-  632 (835)
                      ...++.|++.+.-++++..+|.+.+-+.....+..  .++.|.-.++...|+. +.+++++|+.|+.+..||++.++.. 
T Consensus       123 ~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i  202 (339)
T KOG0280|consen  123 EALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI  202 (339)
T ss_pred             eeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee
Confidence            35678899999999999999999966655555444  7899999999999976 3578999999999999999954433 


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeE--eecCceEEEEecCCC-EEEEEEcCCcEEEEE
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGV--FKSGATQMRFQPRLG-RILAAAIENYISILD  708 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~--~~~~i~~l~fsp~~~-~ll~~s~dg~I~IwD  708 (835)
                      ......|...|.+|.-+|....++++|+.|-.|++||.++ ++.+..  ..+++..+..+|... .+++++.-+..+|.+
T Consensus       203 ~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~  282 (339)
T KOG0280|consen  203 WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILD  282 (339)
T ss_pred             eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceEEE
Confidence            3446779999999999998888999999999999999984 555543  347789999888643 455566666677777


Q ss_pred             CCCC--e---EEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEE-EEEcCCC
Q 003271          709 VETQ--V---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVR-VWSIGSG  753 (835)
Q Consensus       709 l~t~--~---~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~-IwDl~t~  753 (835)
                      ...+  +   .....+.|.+-+..-.|.....+|++|+  |..++ +|-.-++
T Consensus       283 ~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  283 SSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence            7653  2   3344556777777777765567888887  77755 7765444

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.15  E-value=3.5e-08  Score=111.29  Aligned_cols=250  Identities=13%  Similarity=0.082  Sum_probs=159.7

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl  646 (835)
                      +..|++++.++.|..+|..+++.+..+.........+..  ++..+++++.++.|..+|..+++...+ ... ...+.+.
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-~~~-~~~~~~~  140 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA--DGGLVFVGTEKGEVIALDAEDGKELWR-AKL-SSEVLSP  140 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE--cCCEEEEEcCCCEEEEEECCCCcEeee-ecc-CceeecC
Confidence            558888888999999999999998776544432223333  466888888999999999998875332 221 2222221


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceE--------EEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQ--------MRFQPRLGRILAAAIENYISILDVETQVCRLKL  718 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~--------l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l  718 (835)
                      ... .+. .++.+..++.|+.||.++++.+..+......        ..+  .++.++++..++.+..+|.++++.+...
T Consensus       141 p~v-~~~-~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~  216 (377)
T TIGR03300       141 PLV-ANG-LVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQ  216 (377)
T ss_pred             CEE-ECC-EEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeee
Confidence            111 123 3445667999999999999987766533211        111  2357788888899999999999877654


Q ss_pred             cCCC----CC------e-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271          719 QGHK----NQ------V-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC  786 (835)
Q Consensus       719 ~~h~----~~------I-~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~  786 (835)
                      ....    ..      + .+..+  .+..+++++ ++.++.||..++   +.+.....  .......  ..+..|++++.
T Consensus       217 ~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG---~~~W~~~~--~~~~~p~--~~~~~vyv~~~  287 (377)
T TIGR03300       217 RVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG---RVLWKRDA--SSYQGPA--VDDNRLYVTDA  287 (377)
T ss_pred             ccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC---cEEEeecc--CCccCce--EeCCEEEEECC
Confidence            3110    00      1 01111  234555555 999999999887   44433331  1112222  24567889999


Q ss_pred             CCeEEEEEcCCCcEEE-eccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          787 YETLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       787 dg~I~IwDl~~~~~~~-l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|.|+.+|..+++.+- ..... ..+.....  .+..|++++.||.|++||
T Consensus       288 ~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d  336 (377)
T TIGR03300       288 DGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLS  336 (377)
T ss_pred             CCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEE
Confidence            9999999999998762 21211 12223233  356888899999998875

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.15  E-value=6.8e-09  Score=113.70  Aligned_cols=269  Identities=17%  Similarity=0.193  Sum_probs=186.9

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--------------
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--------------  619 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg--------------  619 (835)
                      -.-++..++|||.|.+|++.... .|.+|....+..+..+. | ..|..+.|+|.+++|.|=+...              
T Consensus        31 ~~~p~~~~~~SP~G~~l~~~~~~-~V~~~~g~~~~~l~~~~-~-~~V~~~~fSP~~kYL~tw~~~pi~~pe~e~sp~~~~  107 (561)
T COG5354          31 ENWPVAYVSESPLGTYLFSEHAA-GVECWGGPSKAKLVRFR-H-PDVKYLDFSPNEKYLVTWSREPIIEPEIEISPFTSK  107 (561)
T ss_pred             cCcchhheeecCcchheehhhcc-ceEEccccchhheeeee-c-CCceecccCcccceeeeeccCCccChhhccCCcccc
Confidence            34568889999999999987654 59999988877665553 4 4599999999999999976533              


Q ss_pred             -eEEEEecCCCCceeEEeecCCCC--eE-EEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEee-cCceEEEEec
Q 003271          620 -TVRVWDTENPDYSLRTFTGHSTT--VM-SLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFK-SGATQMRFQP  690 (835)
Q Consensus       620 -~I~IWDl~t~~~~~~~~~~h~~~--V~-sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----~~~~~-~~i~~l~fsp  690 (835)
                       .+.|||+.++.. +..+..-..+  .+ -+.|+-+..+.+-.  ....++|+++ ++..    .+.++ .++....|+|
T Consensus       108 n~~~vwd~~sg~i-v~sf~~~~q~~~~Wp~~k~s~~D~y~ARv--v~~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP  183 (561)
T COG5354         108 NNVFVWDIASGMI-VFSFNGISQPYLGWPVLKFSIDDKYVARV--VGSSLYIHEI-TDNIEEHPFKNLRPVGILDFSISP  183 (561)
T ss_pred             CceeEEeccCcee-EeeccccCCcccccceeeeeecchhhhhh--ccCeEEEEec-CCccccCchhhccccceeeEEecC
Confidence             499999998764 6666655544  44 56777775543323  2457999997 3322    22333 5688888888


Q ss_pred             CCCE--EEEE-----EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe------------CCeEEEEEcC
Q 003271          691 RLGR--ILAA-----AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS------------DELVRVWSIG  751 (835)
Q Consensus       691 ~~~~--ll~~-----s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs------------Dg~I~IwDl~  751 (835)
                      .++.  |++-     ...+.++||.+..+..+....-....-..+.|.+.|++|++-.            +..++|+++.
T Consensus       184 ~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~  263 (561)
T COG5354         184 EGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRIT  263 (561)
T ss_pred             CCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeec
Confidence            7533  3332     2357899999987766554332222334688999998877532            2468888887


Q ss_pred             CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc--CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-
Q 003271          752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC--YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-  828 (835)
Q Consensus       752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~--dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D-  828 (835)
                      ..    .+.......++|..++|.|.++.+++++.  .-.+.++|++.+  +.....+..=+.+.|+|.+++++.++-| 
T Consensus       264 e~----~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~n  337 (561)
T COG5354         264 ER----SIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDN  337 (561)
T ss_pred             cc----ccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCc
Confidence            43    22222255789999999999988777763  458999999888  4444555566778889999988887765 


Q ss_pred             --CcEEEeC
Q 003271          829 --KCVKIWK  835 (835)
Q Consensus       829 --G~V~IWd  835 (835)
                        |.|-|||
T Consensus       338 l~gni~i~~  346 (561)
T COG5354         338 LQGNIEIFD  346 (561)
T ss_pred             cccceEEec
Confidence              4677775

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.15  E-value=1.2e-08  Score=112.56  Aligned_cols=268  Identities=17%  Similarity=0.225  Sum_probs=184.7

Q ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC-----------CCeEEEEecC
Q 003271          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-----------DRTVRVWDTE  627 (835)
Q Consensus       559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-----------Dg~I~IWDl~  627 (835)
                      +-+.|||.|.||+|--.- -|.+|--++...+..+. |.+ |.-+.|||+.+||+|-+.           ...++|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~-Hp~-Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFY-HPG-VQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceeeecCccHHHHHhcc-CCC-ceeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            458999999999998654 48999888887777773 654 889999999999999754           2579999999


Q ss_pred             CCCceeEEeec--CCCCe-EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee--Eee-cCceEEEEecCCCEEEEEEcC
Q 003271          628 NPDYSLRTFTG--HSTTV-MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK-SGATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       628 t~~~~~~~~~~--h~~~V-~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~-~~i~~l~fsp~~~~ll~~s~d  701 (835)
                      ++.. .+.+..  ....+ .-+.|+.|++++..-.  ...|.||+..+...+.  .++ .+|....|+|.+..|+.-+..
T Consensus       291 tG~l-krsF~~~~~~~~~WP~frWS~DdKy~Arm~--~~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe  367 (698)
T KOG2314|consen  291 TGLL-KRSFPVIKSPYLKWPIFRWSHDDKYFARMT--GNSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPE  367 (698)
T ss_pred             ccch-hcceeccCCCccccceEEeccCCceeEEec--cceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccc
Confidence            9875 455443  22222 3467898877444333  4689999988754432  222 568888999998877765532


Q ss_pred             -----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCC-----------eEEEEEcCCCCCcceEEEeecC
Q 003271          702 -----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-----------LVRVWSIGSGSKGECIHELSCT  765 (835)
Q Consensus       702 -----g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg-----------~I~IwDl~t~~~~~~i~~l~~~  765 (835)
                           ..+.+..+.++..+++..-+.-.=..+.|-.+|.||+.--|.           .+.|+.++....  .+.. -..
T Consensus       368 ~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI--pve~-vel  444 (698)
T KOG2314|consen  368 TNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI--PVEV-VEL  444 (698)
T ss_pred             ccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC--Ccee-eec
Confidence                 357788888777776655444334457888999999865421           456666665422  2222 223


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCC-CcEEEe--ccCCCCeeEEEEeCCCCEEEEEE---CCCcEEEeC
Q 003271          766 GNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTE-NKTLTL--SAHDKLVSSLAASTVNGMVASAS---HDKCVKIWK  835 (835)
Q Consensus       766 ~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~-~~~~~l--~~h~~~V~~la~spdg~~LaSgs---~DG~V~IWd  835 (835)
                      ...|...+|.|.|..+++.+...   ++.+|.+++ .....+  .-.....+.+.|+|.|++++.+.   ..|.+.++|
T Consensus       445 ke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D  523 (698)
T KOG2314|consen  445 KESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYD  523 (698)
T ss_pred             chheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEe
Confidence            56789999999998888776653   899998873 222211  11225568899999999888765   356677665

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.13  E-value=5.2e-09  Score=116.74  Aligned_cols=187  Identities=18%  Similarity=0.294  Sum_probs=147.3

Q ss_pred             CCCCEEEEEECCCeEEEEecCCCCceeEEe--ecCCCCeEEEEE------cC-------------CCCcEEEEEeCCCcE
Q 003271          607 PSLSRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDF------HP-------------SKEDLLCSCDNNSEI  665 (835)
Q Consensus       607 pdg~~Latgs~Dg~I~IWDl~t~~~~~~~~--~~h~~~V~sl~f------sp-------------~g~~ll~sgs~Dg~I  665 (835)
                      |...++|....||.++|||...++......  ..-.+...+..|      +|             .+..+++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            446789999999999999998776422111  112233334443      22             224567788889999


Q ss_pred             EEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271          666 RYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg  740 (835)
                      .+|++..++....+.     +.+.++.++.+-+.|.+++.|+.+..|+......++.+......+.++|.+|||..++++
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a  162 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA  162 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence            999999999887776     447888888888999999999999999999999999999989999999999999988876


Q ss_pred             eCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC-----CCEEEEEEc-CCeEEEEEcCC
Q 003271          741 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT-----FPSLLVIGC-YETLELWNMTE  797 (835)
Q Consensus       741 sDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd-----g~~L~sgs~-dg~I~IwDl~~  797 (835)
                      + +.|++||++++   +.+..+.+|.++|.++.|..+     |.+++++.. +..|.+|-+..
T Consensus       163 s-~~ik~~~~~~k---evv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  163 S-RQIKVLDIETK---EVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             c-ceEEEEEccCc---eEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            4 67999999998   899999999999999999877     666665544 44677776544

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.13  E-value=5.5e-08  Score=122.27  Aligned_cols=235  Identities=13%  Similarity=0.164  Sum_probs=161.0

Q ss_pred             EEEEEeCC-CCEEEEEeCCCeEEEEEcCCCeEEEEecc-C-------------CCCeEEEEECCCCCEEEEEEC-CCeEE
Q 003271          559 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEE-H-------------TQWITDVRFSPSLSRLATSSA-DRTVR  622 (835)
Q Consensus       559 ~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h-------------~~~V~sv~fspdg~~Latgs~-Dg~I~  622 (835)
                      ..++++++ +.++++-...+.|++||... ..+..+.+ .             -.....|++++++..|+++.. .+.|+
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir  649 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR  649 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence            45788874 56677777788999999764 44433322 1             123578999998887666654 57899


Q ss_pred             EEecCCCCceeEEeecC-----------------CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----
Q 003271          623 VWDTENPDYSLRTFTGH-----------------STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----  680 (835)
Q Consensus       623 IWDl~t~~~~~~~~~~h-----------------~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----  680 (835)
                      ++|+.++.  +.++.+.                 -.....++|+|++..++++...++.|++||..++.......     
T Consensus       650 ~id~~~~~--V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        650 EIDFVNET--VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEecCCCE--EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            99987654  3333211                 11346799999767788888889999999998775432110     


Q ss_pred             ------------cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcC-------------C--------CCCeE
Q 003271          681 ------------SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG-------------H--------KNQVH  726 (835)
Q Consensus       681 ------------~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~-------------h--------~~~I~  726 (835)
                                  .....++++|+++.++++.. ++.|++||+.++.......+             +        -....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence                        12446899999986666654 58999999987653221100             0        11245


Q ss_pred             EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec--------------CCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271          727 SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--------------TGNKFHSCVFHPTFPSLLVIGCYETLE  791 (835)
Q Consensus       727 sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~--------------~~~~V~sv~fspdg~~L~sgs~dg~I~  791 (835)
                      +++++++|.++++.. ++.|++||..++   ... .+.+              .-.....++++++|+.+++-+.++.|+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg---~v~-tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Ir  883 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATK---RVT-TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIR  883 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCC---eEE-EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEE
Confidence            889999998777776 889999999876   222 2211              123577899999999777777788999


Q ss_pred             EEEcCCCcE
Q 003271          792 LWNMTENKT  800 (835)
Q Consensus       792 IwDl~~~~~  800 (835)
                      +||+.+++.
T Consensus       884 vid~~~~~~  892 (1057)
T PLN02919        884 YLDLNKGEA  892 (1057)
T ss_pred             EEECCCCcc
Confidence            999988764

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.12  E-value=6.1e-08  Score=110.47  Aligned_cols=226  Identities=12%  Similarity=0.076  Sum_probs=149.3

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCE-EEEEECC---CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR-LATSSAD---RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK  652 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~-Latgs~D---g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g  652 (835)
                      ..|.+-|.+......... .. .+....|+|||+. ++..+.+   ..|+++|+.+++.  +.+....+.+....|+|||
T Consensus       169 ~~l~~~d~dg~~~~~~~~-~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~--~~lt~~~g~~~~~~~SPDG  244 (419)
T PRK04043        169 SNIVLADYTLTYQKVIVK-GG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKK--EKIASSQGMLVVSDVSKDG  244 (419)
T ss_pred             ceEEEECCCCCceeEEcc-CC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcE--EEEecCCCcEEeeEECCCC
Confidence            355555654443332332 33 7788999999984 6654443   4689999987653  3444455667778899999


Q ss_pred             CcEEEEEeCC--CcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCe
Q 003271          653 EDLLCSCDNN--SEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQV  725 (835)
Q Consensus       653 ~~ll~sgs~D--g~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I  725 (835)
                      +.++++.+.+  ..|+++|+.+++........  .....|+|+|+.|+..+.. +  .|+++|+.+++....... ... 
T Consensus       245 ~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~~-  322 (419)
T PRK04043        245 SKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GKN-  322 (419)
T ss_pred             CEEEEEEccCCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CCc-
Confidence            9888777655  46888898877654433322  3456899999988887753 2  688889988776443321 111 


Q ss_pred             EEEEEcCCCCEEEEEe-C-------C--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEE
Q 003271          726 HSVCWNTSGEYLASVS-D-------E--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLEL  792 (835)
Q Consensus       726 ~sl~fspdg~~Lasgs-D-------g--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~I  792 (835)
                       ...|+|||++|+... .       +  .|.+.|+.++.    ...+... .......|+|||+.|+..+.++   .|.+
T Consensus       323 -~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~----~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~  396 (419)
T PRK04043        323 -NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDY----IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGI  396 (419)
T ss_pred             -CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCC----eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEE
Confidence             248999999998776 2       2  67888887763    2233322 2233588999999888877654   5888


Q ss_pred             EEcCCCcEEEeccCCCCeeEEE
Q 003271          793 WNMTENKTLTLSAHDKLVSSLA  814 (835)
Q Consensus       793 wDl~~~~~~~l~~h~~~V~~la  814 (835)
                      +++.......+....+.|...+
T Consensus       397 ~~l~g~~~~~l~~~~g~~~~p~  418 (419)
T PRK04043        397 IRLNYNKSFLFPLKVGKIQSID  418 (419)
T ss_pred             EecCCCeeEEeecCCCccCCCC
Confidence            8888776666655555554433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.10  E-value=4.5e-08  Score=122.99  Aligned_cols=231  Identities=11%  Similarity=0.116  Sum_probs=156.4

Q ss_pred             EEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeec--------------CCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          601 TDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTG--------------HSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       601 ~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~--------------h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      ..++++++ +.++++-+.++.|++||... .. +..+..              .-.....|+++++++.++++-..++.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~-i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NF-IVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCC-CE-EEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceE
Confidence            46788875 55667767788999999864 32 222221              112357899998877666665567889


Q ss_pred             EEEECCCCeeeeEee-------------------cCceEEEEecCCCEEEEE-EcCCcEEEEECCCCeEEEEEcCC----
Q 003271          666 RYWSINNGSCAGVFK-------------------SGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGH----  721 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~-------------------~~i~~l~fsp~~~~ll~~-s~dg~I~IwDl~t~~~i~~l~~h----  721 (835)
                      +++|+.++.......                   .....++++|+++.++++ +.++.|++||..++.... +.+.    
T Consensus       649 r~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYER  727 (1057)
T ss_pred             EEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccc
Confidence            999998765432211                   123568999965555554 557899999998775432 2111    


Q ss_pred             -----------CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEE-----------Eeec--------CCCce
Q 003271          722 -----------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH-----------ELSC--------TGNKF  769 (835)
Q Consensus       722 -----------~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~-----------~l~~--------~~~~V  769 (835)
                                 -.....|+|+|++..|+++.  ++.|++||+.++.. ..+.           .+..        .....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~-~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P  806 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGS-RLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHP  806 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecccccCcccccccCCCCchhhhhccCC
Confidence                       12345799999998666555  78999999987531 1110           0000        01134


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccC--------------CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH--------------DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h--------------~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..++++++|..+++-..++.|++||..++.+..+.+.              -.....|+++++|+++++-+.+++|++||
T Consensus       807 ~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid  886 (1057)
T PLN02919        807 LGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLD  886 (1057)
T ss_pred             ceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEE
Confidence            6889999998777777788999999998887654332              13578899999999999988999999996

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.10  E-value=8.8e-08  Score=103.95  Aligned_cols=282  Identities=14%  Similarity=0.103  Sum_probs=187.5

Q ss_pred             ccccccccCC-CceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC-CCeEEEEeccCCCC--eEEEEECC
Q 003271          532 RVGRSAEVGK-GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQW--ITDVRFSP  607 (835)
Q Consensus       532 ~~~~~~~~~~-g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~i~~l~~h~~~--V~sv~fsp  607 (835)
                      ..+.+|-... +.+|..+..+.+|   |+|-.+-. ++..+....||.=.||+++ .|+-   ++.|+..  -.+=..+.
T Consensus       204 trGklWis~d~g~tFeK~vdl~~~---vS~PmIV~-~RvYFlsD~eG~GnlYSvdldGkD---lrrHTnFtdYY~R~~ns  276 (668)
T COG4946         204 TRGKLWISSDGGKTFEKFVDLDGN---VSSPMIVG-ERVYFLSDHEGVGNLYSVDLDGKD---LRRHTNFTDYYPRNANS  276 (668)
T ss_pred             ccceEEEEecCCcceeeeeecCCC---cCCceEEc-ceEEEEecccCccceEEeccCCch---hhhcCCchhccccccCC
Confidence            3445554443 4488888888888   43333332 3344445566665666543 2222   2234331  12333456


Q ss_pred             CCCEEEEEECCCeEEEEecCCCCceeEEee-----cC--C---CCeEEEE-EcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 003271          608 SLSRLATSSADRTVRVWDTENPDYSLRTFT-----GH--S---TTVMSLD-FHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (835)
Q Consensus       608 dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~-----~h--~---~~V~sl~-fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~  676 (835)
                      ||+.++.. ..|.|.+||.++.......+.     ..  .   .+..-+. |++....+++..+ .|...+.+...+-.+
T Consensus       277 DGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VS-RGkaFi~~~~~~~~i  354 (668)
T COG4946         277 DGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVS-RGKAFIMRPWDGYSI  354 (668)
T ss_pred             CCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEe-cCcEEEECCCCCeeE
Confidence            88877664 567899999887653211111     00  0   1111111 3443344555555 677888877766555


Q ss_pred             eEe-ecCceEEEEecCCCEEEEEEcCC-cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271          677 GVF-KSGATQMRFQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  753 (835)
Q Consensus       677 ~~~-~~~i~~l~fsp~~~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~  753 (835)
                      ..- +.++.-..+..+...++.|..|| .+-|||.++++... +...-+.|.++..+++|++++++. ...|.++|+.++
T Consensus       355 qv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr-~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididng  433 (668)
T COG4946         355 QVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKR-IEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG  433 (668)
T ss_pred             EcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEE-eeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC
Confidence            443 35577777888888899999998 89999999887554 444678899999999999999988 559999999998


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC----eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE----TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg----~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                      .   ....-....+-|+.+.|||++++|+.+--+|    .|++||+.+++........+.=.+-+|.||+++|..-+
T Consensus       434 n---v~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         434 N---VRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             C---eeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence            3   2222233457799999999999999988777    89999999999986666666667789999999776544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.10  E-value=9.1e-10  Score=124.22  Aligned_cols=276  Identities=18%  Similarity=0.312  Sum_probs=193.0

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CeEEEEeccCCC--CeEEEEECCC--CCEEEEEECCCeEEEEecCCC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQ--WITDVRFSPS--LSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~i~~l~~h~~--~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~  629 (835)
                      .+.+.++.++|.|+-+|.++.-| +.+-|++. +....-+. |..  .|-++.|++.  -.+-++......-.||++...
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~-h~tpw~vad~qws~h~a~~~wiVsts~qkaiiwnlA~s  101 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLH-HITPWQVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKS  101 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCCCCceeee-ccCcchhcceecccCCCCceeEEecCcchhhhhhhhcC
Confidence            34588899999999999988766 44556543 33333332 322  4667888875  334444445556778987643


Q ss_pred             --CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeE---eecCceEEEEecCCCEEEEEEcCCc
Q 003271          630 --DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGV---FKSGATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       630 --~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~---~~~~i~~l~fsp~~~~ll~~s~dg~  703 (835)
                        ......+.+|...|+.+-|+|....++++|+.|-.+..||+++... +..   .......+.|+.....+++.+..+.
T Consensus       102 s~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~  181 (1081)
T KOG0309|consen  102 SSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGND  181 (1081)
T ss_pred             CccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCc
Confidence              2334567889999999999999999999999999999999998643 333   2356888999999999999999999


Q ss_pred             EEEEECCCC-eEEEEEcCCCCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271          704 ISILDVETQ-VCRLKLQGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       704 I~IwDl~t~-~~i~~l~~h~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~  780 (835)
                      |.+||++.+ .++..+++|...|..+.|..- ...+.+++ |++|+.||......  .-........+|+.-.+.|-|.-
T Consensus       182 i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~--e~~~~vtt~~piw~~r~~Pfg~g  259 (1081)
T KOG0309|consen  182 IFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTT--ESKRTVTTNFPIWRGRYLPFGEG  259 (1081)
T ss_pred             eEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeeccccccc--ccceeccccCcceeccccccCce
Confidence            999999976 677888999999999988653 23344455 99999999876532  11122233556777777776543


Q ss_pred             EEEEEc--CCeEEEE---------EcCCCc-E-EEeccCCCCeeEEEEeCCCC----------EEEEEECCCcEEEe
Q 003271          781 LLVIGC--YETLELW---------NMTENK-T-LTLSAHDKLVSSLAASTVNG----------MVASASHDKCVKIW  834 (835)
Q Consensus       781 L~sgs~--dg~I~Iw---------Dl~~~~-~-~~l~~h~~~V~~la~spdg~----------~LaSgs~DG~V~IW  834 (835)
                      .++--.  +..+.++         ++.++. . .++.+|.+.|..+-|-..+.          .|+|-+.|..+++|
T Consensus       260 ~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  260 YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             eEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence            332211  1133333         333322 2 37889999988776643221          79999999999999

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.07  E-value=3e-09  Score=109.72  Aligned_cols=238  Identities=17%  Similarity=0.316  Sum_probs=163.4

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-----eEEEEeccCC------------CCeEEEEECCCC--CEEEE
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----TVKSTLEEHT------------QWITDVRFSPSL--SRLAT  614 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-----~~i~~l~~h~------------~~V~sv~fspdg--~~Lat  614 (835)
                      ..+.|+++.|...|.||++|...|.|.+|.-+..     +....+.+|.            ..|..|.|..++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            4567999999999999999999999999975532     2223344443            357888887653  35777


Q ss_pred             EECCCeEEEEecCCCC-----------------------------------------ceeEEe-ecCCCCeEEEEEcCCC
Q 003271          615 SSADRTVRVWDTENPD-----------------------------------------YSLRTF-TGHSTTVMSLDFHPSK  652 (835)
Q Consensus       615 gs~Dg~I~IWDl~t~~-----------------------------------------~~~~~~-~~h~~~V~sl~fsp~g  652 (835)
                      .+.|.+|++|.+....                                         .+.+.+ ..|.-.|.++.|..+.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            7799999999875431                                         001112 3567778899999886


Q ss_pred             CcEEEEEeCCCcEEEEECCCCee-ee--Eee--------cCceEEEEecCCC-EEEEEEcCCcEEEEECCCCeE------
Q 003271          653 EDLLCSCDNNSEIRYWSINNGSC-AG--VFK--------SGATQMRFQPRLG-RILAAAIENYISILDVETQVC------  714 (835)
Q Consensus       653 ~~ll~sgs~Dg~I~iwDl~s~~~-~~--~~~--------~~i~~l~fsp~~~-~ll~~s~dg~I~IwDl~t~~~------  714 (835)
                      ..++ ++ .|-.|.+|++..... ..  .++        .-+++..|+|... .+...+..|.|++.|++....      
T Consensus       185 et~l-Sa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~k  262 (460)
T COG5170         185 ETLL-SA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKK  262 (460)
T ss_pred             heee-ec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchh
Confidence            6444 44 478999999864321 11  111        2277788999754 455667789999999983211      


Q ss_pred             E----------EEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCC------------Cce---
Q 003271          715 R----------LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG------------NKF---  769 (835)
Q Consensus       715 i----------~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~------------~~V---  769 (835)
                      +          .-+.+-...|..+.|+++|+||++-+--+|+|||++..+  .++.++..|.            ..|   
T Consensus       263 lfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyltvkiwDvnm~k--~pikTi~~h~~l~~~l~d~YEnDaifdk  340 (460)
T COG5170         263 LFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYLTVKIWDVNMAK--NPIKTIPMHCDLMDELNDVYENDAIFDK  340 (460)
T ss_pred             hhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccceEEEEeccccc--CCceeechHHHHHHHHHhhhhccceeee
Confidence            1          111223457888999999999998888899999998764  4565553332            122   


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          770 HSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       770 ~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      ..|.|+.+...+++|+.....-||-+
T Consensus       341 FeisfSgd~~~v~sgsy~NNfgiyp~  366 (460)
T COG5170         341 FEISFSGDDKHVLSGSYSNNFGIYPT  366 (460)
T ss_pred             EEEEecCCcccccccccccceeeecc
Confidence            45778888888888888777666653

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.06  E-value=3.4e-07  Score=113.22  Aligned_cols=279  Identities=15%  Similarity=0.209  Sum_probs=183.6

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEE----EcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC-
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLW----CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-  627 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW----d~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~-  627 (835)
                      ...+.|.++.|-++..-|+.+..+|.|.++    +..+... .....-...|.+++||||...|+.++.+++|.+-+-. 
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~f  151 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-EIVGSVDSGILAASWSPDEELLALVTGEGNLLLMTRDF  151 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-EEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccc
Confidence            445789999999999999999999999999    5544322 2222345789999999999999999999888776421 


Q ss_pred             -----------C-C----------Ccee------------------------EEeecCCCCeEEEEEcCCCCcEEEEEe-
Q 003271          628 -----------N-P----------DYSL------------------------RTFTGHSTTVMSLDFHPSKEDLLCSCD-  660 (835)
Q Consensus       628 -----------t-~----------~~~~------------------------~~~~~h~~~V~sl~fsp~g~~ll~sgs-  660 (835)
                                 . +          ++..                        ..+. +.+.-..|+|-.||.++.++.- 
T Consensus       152 d~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~  230 (928)
T PF04762_consen  152 DPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVE  230 (928)
T ss_pred             eEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEE
Confidence                       0 0          0000                        0011 3334567889999986665553 


Q ss_pred             -C---CCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc---CCcEEEEECCC---CeEEEEEcCCCCCeEE
Q 003271          661 -N---NSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI---ENYISILDVET---QVCRLKLQGHKNQVHS  727 (835)
Q Consensus       661 -~---Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~---dg~I~IwDl~t---~~~i~~l~~h~~~I~s  727 (835)
                       .   -..|+||+-+ |....+..   +--..++|.|.|+.|++.-.   ...|.+|.-+.   ++....+......|..
T Consensus       231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~  309 (928)
T PF04762_consen  231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE  309 (928)
T ss_pred             cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence             2   2589999987 54433322   22567899999998887765   23455665432   2222223235668999


Q ss_pred             EEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCE-EEEEEcCCeEEEEEc----CCC---
Q 003271          728 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPS-LLVIGCYETLELWNM----TEN---  798 (835)
Q Consensus       728 l~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~-L~sgs~dg~I~IwDl----~~~---  798 (835)
                      +.|++|+.+|+....+.|.+|-..+.. .....++... ...+..+.|+|.... |.+.+.++.+.+++.    ..+   
T Consensus       310 l~Wn~ds~iLAv~~~~~vqLWt~~NYH-WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~  388 (928)
T PF04762_consen  310 LAWNSDSEILAVWLEDRVQLWTRSNYH-WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGS  388 (928)
T ss_pred             EEECCCCCEEEEEecCCceEEEeeCCE-EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCC
Confidence            999999999999886669999887652 1222333322 233455899997654 555555565544432    211   


Q ss_pred             -------------cEE----------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          799 -------------KTL----------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       799 -------------~~~----------------~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                                   ..+                ........|.+++|++++..+++-..||.|.+|+
T Consensus       389 ~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~  454 (928)
T PF04762_consen  389 SPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYE  454 (928)
T ss_pred             CccCceEEEEEeCCeEEEecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEE
Confidence                         111                0112356799999999998899999999999884

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.04  E-value=9.2e-08  Score=109.05  Aligned_cols=210  Identities=14%  Similarity=0.175  Sum_probs=152.6

Q ss_pred             CceeEEEEEecCCCCCEEEEEEeCC------C------CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECC--
Q 003271          542 GFTFTEFQLIPASTSKVESCHFSPD------G------KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP--  607 (835)
Q Consensus       542 g~~~~~i~~l~gH~~~V~sl~fSpd------g------~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp--  607 (835)
                      ...+..+..+..|...|+.+.|.|-      +      -+||++...|.|.|||...+..+..+..|.++|.+++|.+  
T Consensus        42 s~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~r  121 (1062)
T KOG1912|consen   42 SRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPAR  121 (1062)
T ss_pred             hhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeecc
Confidence            3455667888899999999999873      1      2578888899999999999999999999999999999976  


Q ss_pred             -CC-CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-------CeeeeE
Q 003271          608 -SL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-------GSCAGV  678 (835)
Q Consensus       608 -dg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-------~~~~~~  678 (835)
                       +. ..|++-....+|.+|+..++.. +..+........|+.+.|-...-++.-+..|.|.+.+.-.       ++....
T Consensus       122 d~Srd~LlaIh~ss~lvLwntdtG~k-~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI  200 (1062)
T KOG1912|consen  122 DDSRDVLLAIHGSSTLVLWNTDTGEK-FWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQI  200 (1062)
T ss_pred             CcchheeEEecCCcEEEEEEccCCce-eeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEE
Confidence             34 4666667778999999999886 4444444456778999886544455555567666665421       111110


Q ss_pred             ee--------------------cC--------ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003271          679 FK--------------------SG--------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW  730 (835)
Q Consensus       679 ~~--------------------~~--------i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f  730 (835)
                      -.                    .+        ...++|+|.-+.++.......+.|+|++-..++..+.-..+.+.-+.|
T Consensus       201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~v  280 (1062)
T KOG1912|consen  201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDV  280 (1062)
T ss_pred             ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEe
Confidence            00                    00        123568888888888899999999999988888776656666666777


Q ss_pred             cCCC--CEEEEEe-CCeEEEEEcCC
Q 003271          731 NTSG--EYLASVS-DELVRVWSIGS  752 (835)
Q Consensus       731 spdg--~~Lasgs-Dg~I~IwDl~t  752 (835)
                      -|++  ..|++.. ||.+.+|-.+.
T Consensus       281 lP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  281 LPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ccCCCcceEEEEecCCeEEEEEeec
Confidence            7765  5677776 99888886543

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=99.04  E-value=8.9e-10  Score=134.27  Aligned_cols=188  Identities=23%  Similarity=0.322  Sum_probs=149.9

Q ss_pred             cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (835)
Q Consensus       503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW  582 (835)
                      ...+.+..+|+-|+.+++|                +++.+......++.-.  ..|+.+.|+..|..+..+..||.+.+|
T Consensus      2217 Hp~~~~Yltgs~dgsv~~~----------------~w~~~~~v~~~rt~g~--s~vtr~~f~~qGnk~~i~d~dg~l~l~ 2278 (2439)
T KOG1064|consen 2217 HPSDPYYLTGSQDGSVRMF----------------EWGHGQQVVCFRTAGN--SRVTRSRFNHQGNKFGIVDGDGDLSLW 2278 (2439)
T ss_pred             CCCCceEEecCCCceEEEE----------------eccCCCeEEEeeccCc--chhhhhhhcccCCceeeeccCCceeec
Confidence            4456788899999999998                3444445555544433  789999999999999999999999999


Q ss_pred             EcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE---CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (835)
Q Consensus       583 d~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs---~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sg  659 (835)
                      .+. .+.....+.|.....+++|-.  ..+++++   .++.+.+||..-..........|...++++++.|. ..++++|
T Consensus      2279 q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~-~qllisg 2354 (2439)
T KOG1064|consen 2279 QAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPK-HQLLISG 2354 (2439)
T ss_pred             ccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCc-ceEEEec
Confidence            987 567777888999999999975  6777764   46899999975443322333889999999999998 4588899


Q ss_pred             eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc
Q 003271          660 DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  719 (835)
Q Consensus       660 s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~  719 (835)
                      +.+|.|++||++..+.++.+..      ++ ...++++++..|.|+||++.....++.+.
T Consensus      2355 gr~G~v~l~D~rqrql~h~~~~------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2355 GRKGEVCLFDIRQRQLRHTFQA------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             CCcCcEEEeehHHHHHHHHhhh------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence            9999999999998888777765      34 55789999999999999999876666654

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.04  E-value=7.3e-08  Score=109.81  Aligned_cols=191  Identities=10%  Similarity=0.083  Sum_probs=131.5

Q ss_pred             CEEEEEEeCCCCE-EEEEeC---CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECC--CeEEEEecCCC
Q 003271          557 KVESCHFSPDGKL-LATGGH---DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SAD--RTVRVWDTENP  629 (835)
Q Consensus       557 ~V~sl~fSpdg~~-Lasgs~---Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~D--g~I~IWDl~t~  629 (835)
                      .+....|+|||+. ++..+.   +..|+++|+.+++...... ..+.+....|+|||+.|+.. +.+  ..|.++|+.++
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            6788999999984 665443   3569999998887655443 55566778899999877654 333  46888888766


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcC------
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIE------  701 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~d------  701 (835)
                      .  .+.+..+........|+|||+.++++.+..+  .|+++|+.+++.......+.....|+|+|+.++.....      
T Consensus       268 ~--~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        268 T--LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             c--EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccC
Confidence            5  3444444443445689999998888876554  68888888877644433332345899999999887754      


Q ss_pred             ---CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCC
Q 003271          702 ---NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGS  752 (835)
Q Consensus       702 ---g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t  752 (835)
                         ..|.++|+.++.... +... .......|+|||+.|+..+  .+  .+.++++..
T Consensus       346 ~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g  401 (419)
T PRK04043        346 KNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY  401 (419)
T ss_pred             CCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence               368888998876543 3322 2333688999999887766  23  466666654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.00  E-value=1.2e-07  Score=106.88  Aligned_cols=304  Identities=11%  Similarity=0.185  Sum_probs=189.6

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ++++++|+.|+.+++.-...+.+.....+    ......+..-.++.||...|.-+.|+.....|-+...+|.|.||-+-
T Consensus        26 ~gyIAcgG~dGlLKVlKl~t~t~d~~~~g----laa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmly  101 (1189)
T KOG2041|consen   26 SGYIACGGADGLLKVLKLGTDTTDLNKSG----LAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLY  101 (1189)
T ss_pred             CCeEEeccccceeEEEEccccCCcccccc----cccccccchhhhhccCcceEEEEEeccccccccccCCCceEEEEeee
Confidence            48999999999999983322222111111    11123344556889999999999999999999999999999999887


Q ss_pred             CCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--------------------------------
Q 003271          586 SFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--------------------------------  631 (835)
Q Consensus       586 t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--------------------------------  631 (835)
                      .+.-....  ......|.+++|+.||..++..-.||.|.|=.++.++.                                
T Consensus       102 kgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~Lf~~ange~h  181 (1189)
T KOG2041|consen  102 KGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQALFKKANGETH  181 (1189)
T ss_pred             cccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHHhhhcCCcEE
Confidence            66533222  12445788999999999988888888776544432210                                


Q ss_pred             ---------------e-e---EEeecCCCCeEEEEEc--------CCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--
Q 003271          632 ---------------S-L---RTFTGHSTTVMSLDFH--------PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--  682 (835)
Q Consensus       632 ---------------~-~---~~~~~h~~~V~sl~fs--------p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--  682 (835)
                                     + +   ..+......|..+.|.        |+ ...++.|..+|.+.+-.-.+......+..+  
T Consensus       182 lydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pd-rP~lavcy~nGr~QiMR~eND~~Pvv~dtgm~  260 (1189)
T KOG2041|consen  182 LYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPD-RPRLAVCYANGRMQIMRSENDPEPVVVDTGMK  260 (1189)
T ss_pred             EecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCC-CCEEEEEEcCceehhhhhcCCCCCeEEecccE
Confidence                           0 0   0011112234455553        23 346667777777776655443333333333  


Q ss_pred             ceEEEEecCCCEEEEEEcCC---------cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271          683 ATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG  753 (835)
Q Consensus       683 i~~l~fsp~~~~ll~~s~dg---------~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~  753 (835)
                      +....|+++|..+++++.+.         .|.+|. .-|+.+.+++.....|++++|-..|-.++.+-|+.|++=+++..
T Consensus       261 ~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~gLriA~AvdsfiyfanIRP~  339 (1189)
T KOG2041|consen  261 IVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGTGLRIAIAVDSFIYFANIRPE  339 (1189)
T ss_pred             eecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCCceEEEEEecceEEEEeeccc
Confidence            66788999999999887642         344443 34677778887889999999999998999888999999998765


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                      -   ....+.   .   .+.|.-.++-+    -.-.|.+||..+.+.. +...|   ..+++|..+--.|++-.+||.|
T Consensus       340 y---kWgy~e---~---TvVy~y~~~e~----p~y~i~Fwdtk~nek~vK~V~~---~~~~a~~~ehCvL~~~~d~~~i  402 (1189)
T KOG2041|consen  340 Y---KWGYIE---E---TVVYVYQKEEL----PQYGIMFWDTKTNEKTVKTVTH---FENMAFYREHCVLINRQDDGVI  402 (1189)
T ss_pred             c---eEEEee---e---EEEEEEccCCC----cceEEEEEecccChhhhhhhcc---eeehheecccEEEEeccccCCC
Confidence            2   111111   0   11111000000    0116889998877644 33333   3455666555556665666554

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.96  E-value=2.8e-09  Score=130.03  Aligned_cols=208  Identities=15%  Similarity=0.233  Sum_probs=162.8

Q ss_pred             CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCce
Q 003271          609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGAT  684 (835)
Q Consensus       609 g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~  684 (835)
                      +..+..+..++.+.-|..+...   .....+-..|.++.-+|... +.++|+.||.|++|....+..+..+.    ..++
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~---~~~k~~v~~v~r~~sHp~~~-~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vt 2255 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGAS---VMIKHPVENVRRMTSHPSDP-YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVT 2255 (2439)
T ss_pred             cccCCcccCCccccceecccce---eEeecccCceeeecCCCCCc-eEEecCCCceEEEEeccCCCeEEEeeccCcchhh
Confidence            3444445556666666655433   23344556788888888866 55599999999999998888877765    3477


Q ss_pred             EEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcceEE
Q 003271          685 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIH  760 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~  760 (835)
                      .+.|+..|+.+.++..||.+.+|.+. .++......|....+.+.|-.  ..+++.+    ++.+.+||..-.....+++
T Consensus      2256 r~~f~~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~ 2332 (2439)
T KOG1064|consen 2256 RSRFNHQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH 2332 (2439)
T ss_pred             hhhhcccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee
Confidence            88999999999999999999999998 667777778999999998876  4455543    5699999987654445666


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          761 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       761 ~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        .+|.+.++++++.|....|++|+.+|.|++||++..+.. .+..         ++ ...+|++|+..|.|+||+
T Consensus      2333 --~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~ 2396 (2439)
T KOG1064|consen 2333 --TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWR 2396 (2439)
T ss_pred             --eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEE
Confidence              789999999999999999999999999999999877665 2222         44 567999999999999995

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=98.95  E-value=1.6e-08  Score=106.08  Aligned_cols=243  Identities=12%  Similarity=0.218  Sum_probs=172.2

Q ss_pred             eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC-CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       588 ~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t-~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      ..+..+++|.+.|++...-|...-+++.+.|.+++||--.+ +.+-......-..+++++.+.++.. .|+.|-..|++.
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~-~L~vg~~ngtvt   93 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESR-RLYVGQDNGTVT   93 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccce-EEEEEEecceEE
Confidence            34567889999999999989888899999999999996443 3332233334567889999998854 666888889998


Q ss_pred             EEECCCC----eeeeEe---ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 003271          667 YWSINNG----SCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS  739 (835)
Q Consensus       667 iwDl~s~----~~~~~~---~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las  739 (835)
                      -+.+...    ...+..   .+.+..+.|+-....+++.+.|..+.---.+.+..+..+. .....+++.+.-.  +...
T Consensus        94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~-~~~~~t~~~~d~~--~~fv  170 (404)
T KOG1409|consen   94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYN-FETPASALQFDAL--YAFV  170 (404)
T ss_pred             EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceE-eeccCCCCceeeE--EEEe
Confidence            8876432    222222   2457778888888888888888766544444433221111 0011111111111  3334


Q ss_pred             Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--EEEeccCCCCeeEEEEe
Q 003271          740 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--TLTLSAHDKLVSSLAAS  816 (835)
Q Consensus       740 gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--~~~l~~h~~~V~~la~s  816 (835)
                      |. .|.|.+..+.... ...+.++.+|...+.+++|.+....|+++..|..|.+||+-.++  ...+.+|.+.|..+...
T Consensus       171 Gd~~gqvt~lr~~~~~-~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~  249 (404)
T KOG1409|consen  171 GDHSGQITMLKLEQNG-CQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA  249 (404)
T ss_pred             cccccceEEEEEeecC-CceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhh
Confidence            44 5555555443321 26788899999999999999999999999999999999986655  44788999999999988


Q ss_pred             CCCCEEEEEECCCcEEEeC
Q 003271          817 TVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       817 pdg~~LaSgs~DG~V~IWd  835 (835)
                      +.-+.+++++.||.|.+|+
T Consensus       250 ~~t~~l~S~~edg~i~~w~  268 (404)
T KOG1409|consen  250 QHTRQLISCGEDGGIVVWN  268 (404)
T ss_pred             hhheeeeeccCCCeEEEEe
Confidence            8888999999999999996

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.95  E-value=8e-07  Score=96.71  Aligned_cols=169  Identities=15%  Similarity=0.159  Sum_probs=131.9

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC-eEEEEecCCCCceeEEeecCCCCeE
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-TVRVWDTENPDYSLRTFTGHSTTVM  644 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg-~I~IWDl~t~~~~~~~~~~h~~~V~  644 (835)
                      +|.+++..+. |.+.|.+...+-.+..  +|...|.-..+..+++-++.|..|| .+-|||.++++  ++.+...-+.|.
T Consensus       331 ~Gd~ia~VSR-GkaFi~~~~~~~~iqv--~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--~kr~e~~lg~I~  405 (668)
T COG4946         331 NGDYIALVSR-GKAFIMRPWDGYSIQV--GKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--VKRIEKDLGNIE  405 (668)
T ss_pred             CCcEEEEEec-CcEEEECCCCCeeEEc--CCCCceEEEEEccCCcceEEeccCCceEEEEecCCce--EEEeeCCccceE
Confidence            6788888874 7788877665554433  5777899999988888999999999 99999999865  466666778899


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCC----cEEEEECCCCeEEEE
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIEN----YISILDVETQVCRLK  717 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg----~I~IwDl~t~~~i~~  717 (835)
                      ++..+++|+.++ .+.....|.++|+.++.....-+   +-++.+.|+|++.+++.+--+|    .|++||+..++....
T Consensus       406 av~vs~dGK~~v-vaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~v  484 (668)
T COG4946         406 AVKVSPDGKKVV-VANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDV  484 (668)
T ss_pred             EEEEcCCCcEEE-EEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEe
Confidence            999999988544 66668899999999987654443   3389999999999999877665    699999998876654


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEe
Q 003271          718 LQGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       718 l~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      .. ....=.+-+|.|++++|..-+
T Consensus       485 TT-~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         485 TT-PTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             cC-CcccccCcccCCCCcEEEEEe
Confidence            43 334445678999999887654

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.95  E-value=9.3e-09  Score=110.08  Aligned_cols=163  Identities=17%  Similarity=0.203  Sum_probs=116.1

Q ss_pred             ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (835)
Q Consensus       502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V  581 (835)
                      ..+..++++++..++...+|+......             +..+.....+......|..+..+.........+....+.+
T Consensus        70 ~s~~~~llAv~~~~K~~~~f~~~~~~~-------------~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di  136 (390)
T KOG3914|consen   70 TSDSGRLVAVATSSKQRAVFDYRENPK-------------GAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDI  136 (390)
T ss_pred             cCCCceEEEEEeCCCceEEEEEecCCC-------------cceeeeEeecccCcceeeeeeccceEEEEeecCCceeeee
Confidence            355567888888888777774433322             1222333334444444555554443333333455566777


Q ss_pred             EEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (835)
Q Consensus       582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~  661 (835)
                      |....+..... -+|-.-+++|+|+||+++|+|+..|..|+|-.+...........||...|..++..++  +.|++++.
T Consensus       137 ~s~~~~~~~~~-lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS~sG  213 (390)
T KOG3914|consen  137 LSADSGRCEPI-LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLSGSG  213 (390)
T ss_pred             ecccccCcchh-hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeeecCC
Confidence            77666555544 4899999999999999999999999999999887655444566789999999999876  45779999


Q ss_pred             CCcEEEEECCCCeeeeEee
Q 003271          662 NSEIRYWSINNGSCAGVFK  680 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~~~~~  680 (835)
                      |++|++||+.+++++.++.
T Consensus       214 D~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  214 DKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CCcEEEEecccCCcccccc
Confidence            9999999999999987765

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.92  E-value=1e-07  Score=98.36  Aligned_cols=240  Identities=13%  Similarity=0.117  Sum_probs=161.9

Q ss_pred             CCCEEEEEEeC---CCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCC------CeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          555 TSKVESCHFSP---DGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       555 ~~~V~sl~fSp---dg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~------~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      +..+..+.|..   +|. .|+-+..+|.|.+|..........+.+-..      ...++.|++.+..++++..+|.+.+-
T Consensus        69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v  148 (339)
T KOG0280|consen   69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGV  148 (339)
T ss_pred             ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEE
Confidence            44566677754   455 466677789999997765444444433211      24578899989999999999999865


Q ss_pred             ecCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-Ceee----eEeecCceEEEEecC-CCEEEE
Q 003271          625 DTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCA----GVFKSGATQMRFQPR-LGRILA  697 (835)
Q Consensus       625 Dl~t~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~----~~~~~~i~~l~fsp~-~~~ll~  697 (835)
                      +...... .+..++.|.-+++...|+....+++++|++|+.+..||++. ++.+    +....++.++.-+|. ..+|++
T Consensus       149 ~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~T  228 (339)
T KOG0280|consen  149 YETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIAT  228 (339)
T ss_pred             ecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEE
Confidence            5544332 13478899999999999988888999999999999999993 3333    233466777776654 568999


Q ss_pred             EEcCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC--CEEEEEeCCeEEEEEcCCCCCc--ceEEEeecCCCceEEE
Q 003271          698 AAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG--EYLASVSDELVRVWSIGSGSKG--ECIHELSCTGNKFHSC  772 (835)
Q Consensus       698 ~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg--~~LasgsDg~I~IwDl~t~~~~--~~i~~l~~~~~~V~sv  772 (835)
                      |+.|..|++||.+. ++++..-. -.+.|..++++|.-  .+|++|--+-.+|.+...+...  ......+.|.+-+..-
T Consensus       229 GsYDe~i~~~DtRnm~kPl~~~~-v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~  307 (339)
T KOG0280|consen  229 GSYDECIRVLDTRNMGKPLFKAK-VGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGG  307 (339)
T ss_pred             eccccceeeeehhcccCccccCc-cccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeecc
Confidence            99999999999994 55555433 45789999999853  4455555444677776654321  1333445555555566


Q ss_pred             EEeCCCCEEEEEEc-CCeEE-EEEc
Q 003271          773 VFHPTFPSLLVIGC-YETLE-LWNM  795 (835)
Q Consensus       773 ~fspdg~~L~sgs~-dg~I~-IwDl  795 (835)
                      .|.....+|++++. |..|+ +|-.
T Consensus       308 DWd~~~~~lATCsFYDk~~~~~Wl~  332 (339)
T KOG0280|consen  308 DWDSKDSFLATCSFYDKKIRQLWLH  332 (339)
T ss_pred             ccccccceeeeeeccccceeeeeee
Confidence            66444456777654 33433 5543

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.91  E-value=5.1e-06  Score=87.94  Aligned_cols=217  Identities=15%  Similarity=0.176  Sum_probs=144.7

Q ss_pred             EEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEEC-CCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS-PSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       559 ~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fs-pdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      .+++|.+ ++.++++-...+.|+.|+..+++..... ...  ...+++. +++ .|+.+..++ +.++|+.+++......
T Consensus         3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~-~~~--~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVID-LPG--PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEE-SSS--EEEEEEECTTS-EEEEEETTC-EEEEETTTTEEEEEEE
T ss_pred             cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEe-cCC--CceEEEEccCC-EEEEEEcCc-eEEEecCCCcEEEEee
Confidence            3678998 7777777777899999999887665322 222  6677777 564 555555555 5666988775422111


Q ss_pred             e---c-CCCCeEEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEE-cC
Q 003271          637 T---G-HSTTVMSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAA-IE  701 (835)
Q Consensus       637 ~---~-h~~~V~sl~fsp~g~~ll~sgs~D--------g~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s-~d  701 (835)
                      .   . .....+.+++.++|+ ++++....        |.|+.++.. ++......  .....++|+|+++.|+++. ..
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~-ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~  155 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGN-LYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFN  155 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTT
T ss_pred             ccCCCcccCCCceEEEcCCCC-EEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccccc
Confidence            1   1 345678999999987 55555433        568888888 55443333  3367899999999887665 46


Q ss_pred             CcEEEEECCC--C-----eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          702 NYISILDVET--Q-----VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       702 g~I~IwDl~t--~-----~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      +.|..|++..  .     +....+....+....++++.+|++.++.. .+.|.++|.. +   +.+..+......+++|+
T Consensus       156 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G---~~~~~i~~p~~~~t~~~  231 (246)
T PF08450_consen  156 GRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-G---KLLREIELPVPRPTNCA  231 (246)
T ss_dssp             TEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-S---CEEEEEE-SSSSEEEEE
T ss_pred             ceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-c---cEEEEEcCCCCCEEEEE
Confidence            8899999853  2     11222332233478899999999888776 8899999987 5   56666666666899999


Q ss_pred             Ee-CCCCEEEEEEc
Q 003271          774 FH-PTFPSLLVIGC  786 (835)
Q Consensus       774 fs-pdg~~L~sgs~  786 (835)
                      |. ++.+.|++.+.
T Consensus       232 fgg~~~~~L~vTta  245 (246)
T PF08450_consen  232 FGGPDGKTLYVTTA  245 (246)
T ss_dssp             EESTTSSEEEEEEB
T ss_pred             EECCCCCEEEEEeC
Confidence            94 67777777653

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.90  E-value=3.3e-06  Score=89.34  Aligned_cols=213  Identities=7%  Similarity=0.017  Sum_probs=140.0

Q ss_pred             EEEECC-CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeEe
Q 003271          602 DVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (835)
Q Consensus       602 sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs-p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~  679 (835)
                      +++|.+ ++.++++-...+.|+.|+..++..  ..+... . ...+.+. ++ ..++ .+.. +.+.++|+.+++.....
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~--~~~~~~-~-~~G~~~~~~~-g~l~-v~~~-~~~~~~d~~~g~~~~~~   76 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEV--EVIDLP-G-PNGMAFDRPD-GRLY-VADS-GGIAVVDPDTGKVTVLA   76 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEE--EEEESS-S-EEEEEEECTT-SEEE-EEET-TCEEEEETTTTEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeE--EEEecC-C-CceEEEEccC-CEEE-EEEc-CceEEEecCCCcEEEEe
Confidence            678988 666777766789999999987653  222222 2 6777777 55 4454 4443 45666699988665443


Q ss_pred             ec--------CceEEEEecCCCEEEEEEcC--------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--
Q 003271          680 KS--------GATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--  741 (835)
Q Consensus       680 ~~--------~i~~l~fsp~~~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--  741 (835)
                      ..        ....+++.++|+.+++....        |.|+.++.. ++...... .-.....|+|+|+++.|+.+.  
T Consensus        77 ~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~~~pNGi~~s~dg~~lyv~ds~  154 (246)
T PF08450_consen   77 DLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GLGFPNGIAFSPDGKTLYVADSF  154 (246)
T ss_dssp             EEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EESSEEEEEEETTSSEEEEEETT
T ss_pred             eccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-CcccccceEECCcchheeecccc
Confidence            32        26779999998866655533        558888887 55444433 345678999999999887665  


Q ss_pred             CCeEEEEEcCCCCC-c---ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEe
Q 003271          742 DELVRVWSIGSGSK-G---ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS  816 (835)
Q Consensus       742 Dg~I~IwDl~t~~~-~---~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~s  816 (835)
                      .+.|..|++..... .   ..+..+.......-.+++..+|+..++....+.|.++|.+ ++.+ .+.-....+++++|.
T Consensus       155 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fg  233 (246)
T PF08450_consen  155 NGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFG  233 (246)
T ss_dssp             TTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEE
T ss_pred             cceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEE
Confidence            77999999875422 1   1222233333358889999999877777778899999988 6665 343334589999995


Q ss_pred             -CCCCEEEE
Q 003271          817 -TVNGMVAS  824 (835)
Q Consensus       817 -pdg~~LaS  824 (835)
                       ++.+.|+.
T Consensus       234 g~~~~~L~v  242 (246)
T PF08450_consen  234 GPDGKTLYV  242 (246)
T ss_dssp             STTSSEEEE
T ss_pred             CCCCCEEEE
Confidence             56554443

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.88  E-value=1.2e-06  Score=91.72  Aligned_cols=214  Identities=12%  Similarity=0.021  Sum_probs=137.9

Q ss_pred             CCeEEEEEcCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          576 DKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h--~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      +|.|..||..+++.+....--  .....+. ..+++.++++++.++.|..||..+++. +..+.. ...+....... +.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG~~-~W~~~~-~~~~~~~~~~~-~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTGKV-LWRFDL-PGPISGAPVVD-GG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTSEE-EEEEEC-SSCGGSGEEEE-TT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCCCE-EEEeec-cccccceeeec-cc
Confidence            689999999999999877531  1222211 223566788889999999999998875 333332 22221111222 23


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeeeEe-ecC------ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC--
Q 003271          654 DLLCSCDNNSEIRYWSINNGSCAGVF-KSG------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQ--  724 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s~~~~~~~-~~~------i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~--  724 (835)
                      .+ +.+..++.|+.+|..+++.+..+ ...      .........++.++++..++.|..+|+++++.+.........  
T Consensus        78 ~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~  156 (238)
T PF13360_consen   78 RV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGS  156 (238)
T ss_dssp             EE-EEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS
T ss_pred             cc-ccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCC
Confidence            34 45556889999999999998874 321      122333344788999999999999999999998887654322  


Q ss_pred             --------eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          725 --------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       725 --------I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                              +.+-....++ .++.++ ++.+..+|+.++   +.+....  ...+.. .....+..|++++.++.|.+||+
T Consensus       157 ~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg---~~~w~~~--~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~  229 (238)
T PF13360_consen  157 SPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATG---EKLWSKP--ISGIYS-LPSVDGGTLYVTSSDGRLYALDL  229 (238)
T ss_dssp             --EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTT---EEEEEEC--SS-ECE-CEECCCTEEEEEETTTEEEEEET
T ss_pred             cceeeecccccceEEECC-EEEEEcCCCeEEEEECCCC---CEEEEec--CCCccC-CceeeCCEEEEEeCCCEEEEEEC
Confidence                    1222233345 555555 775444499988   4333222  222222 24567788888889999999999


Q ss_pred             CCCcEE
Q 003271          796 TENKTL  801 (835)
Q Consensus       796 ~~~~~~  801 (835)
                      .+++.+
T Consensus       230 ~tG~~~  235 (238)
T PF13360_consen  230 KTGKVV  235 (238)
T ss_dssp             TTTEEE
T ss_pred             CCCCEE
Confidence            999875

...

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.87  E-value=1.4e-06  Score=99.09  Aligned_cols=253  Identities=11%  Similarity=0.014  Sum_probs=154.9

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCC----
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT----  642 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~----  642 (835)
                      +..|+.++.++.|+.+|.++|+.+...............  .+..+++++.++.|..+|..+++............    
T Consensus       120 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~  197 (394)
T PRK11138        120 GGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRG  197 (394)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccC
Confidence            456777888999999999999988776543321111122  23467778889999999999988533322111000    


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc----------eEEEEec--CCCEEEEEEcCCcEEEEECC
Q 003271          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA----------TQMRFQP--RLGRILAAAIENYISILDVE  710 (835)
Q Consensus       643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i----------~~l~fsp--~~~~ll~~s~dg~I~IwDl~  710 (835)
                      ..+-...  +. .++.++.++.+..+|..+++.+.......          ..+..+|  .++.+++++.++.++.+|..
T Consensus       198 ~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~  274 (394)
T PRK11138        198 ESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLR  274 (394)
T ss_pred             CCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECC
Confidence            0011111  12 34456678999999999988765543110          0011112  35788888899999999999


Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEcCC
Q 003271          711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYE  788 (835)
Q Consensus       711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs~dg  788 (835)
                      +++.+....-  .....+..  .+..|+.++ ++.|..+|..++   +.+-..... .....+..+  .+..|++++.+|
T Consensus       275 tG~~~W~~~~--~~~~~~~~--~~~~vy~~~~~g~l~ald~~tG---~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G  345 (394)
T PRK11138        275 SGQIVWKREY--GSVNDFAV--DGGRIYLVDQNDRVYALDTRGG---VELWSQSDLLHRLLTAPVL--YNGYLVVGDSEG  345 (394)
T ss_pred             CCCEEEeecC--CCccCcEE--ECCEEEEEcCCCeEEEEECCCC---cEEEcccccCCCcccCCEE--ECCEEEEEeCCC
Confidence            9988766542  11112222  344555555 999999999887   333222111 111222222  245789999999


Q ss_pred             eEEEEEcCCCcEE-EeccCCCCee-EEEEeCCCCEEEEEECCCcEEEeC
Q 003271          789 TLELWNMTENKTL-TLSAHDKLVS-SLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       789 ~I~IwDl~~~~~~-~l~~h~~~V~-~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|+++|..+++.+ ...-....+. ...+.  +..|+.++.||.|+.++
T Consensus       346 ~l~~ld~~tG~~~~~~~~~~~~~~s~P~~~--~~~l~v~t~~G~l~~~~  392 (394)
T PRK11138        346 YLHWINREDGRFVAQQKVDSSGFLSEPVVA--DDKLLIQARDGTVYAIT  392 (394)
T ss_pred             EEEEEECCCCCEEEEEEcCCCcceeCCEEE--CCEEEEEeCCceEEEEe
Confidence            9999999999987 3322222232 22332  45788889999988764

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.85  E-value=2.5e-09  Score=122.55  Aligned_cols=263  Identities=14%  Similarity=0.188  Sum_probs=184.9

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--eE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TV  621 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg--~I  621 (835)
                      .|+.+++++.|+...+|++|+.+.++|++|+..|.|++|++.+|........|...|+.|.-+.||..+++.+.-.  ..
T Consensus      1090 RFr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             hcccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence            4667888899999999999999999999999999999999999999999999999999999999999887765533  57


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-------CceEEEEecCCCE
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-------GATQMRFQPRLGR  694 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-------~i~~l~fsp~~~~  694 (835)
                      .+|++.+-....+.|.    .-.++.|+......+ .|.......+||+.++..+.++-.       .-.+..|+|++..
T Consensus      1170 aLW~~~s~~~~~Hsf~----ed~~vkFsn~~q~r~-~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~L 1244 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFD----EDKAVKFSNSLQFRA-LGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTL 1244 (1516)
T ss_pred             HHhccccccCcccccc----ccceeehhhhHHHHH-hcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcce
Confidence            8999886444445544    345777876533223 344446788999999877655321       2456779999877


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEE
Q 003271          695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVF  774 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f  774 (835)
                      ++-   ||  .+||++..+.++.|......+ .-.|+|.|.-++.-+    .|||+++.   +.++....  -.-+.+.|
T Consensus      1245 Iln---dG--vLWDvR~~~aIh~FD~ft~~~-~G~FHP~g~eVIINS----EIwD~RTF---~lLh~VP~--Ldqc~VtF 1309 (1516)
T KOG1832|consen 1245 ILN---DG--VLWDVRIPEAIHRFDQFTDYG-GGGFHPSGNEVIINS----EIWDMRTF---KLLHSVPS--LDQCAVTF 1309 (1516)
T ss_pred             Eee---Cc--eeeeeccHHHHhhhhhheecc-cccccCCCceEEeec----hhhhhHHH---HHHhcCcc--ccceEEEe
Confidence            763   33  589999988888776544222 336899998887754    58999987   44444332  22356677


Q ss_pred             eCCCCEEEEEEc-----C------------CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          775 HPTFPSLLVIGC-----Y------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       775 spdg~~L~sgs~-----d------------g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                      +..|..++..-.     +            ...+-||....+.+........|.++|-.+...+++.--
T Consensus      1310 NstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R~~~Dlct~~~D~~l~vIe 1378 (1516)
T KOG1832|consen 1310 NSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDRCLLDLCTEPTDSFLGVIE 1378 (1516)
T ss_pred             ccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeecccchhhhhcCCccceEEEEe
Confidence            777775554330     0            134444555555554445556677777777666665543

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=98.85  E-value=2e-07  Score=106.34  Aligned_cols=238  Identities=15%  Similarity=0.209  Sum_probs=171.0

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC------C------CEEEEEECCCeE
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS------L------SRLATSSADRTV  621 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd------g------~~Latgs~Dg~I  621 (835)
                      |...-.++.|+|.| +||.|+. ..|.|.|..+.+.+..++.|...|+.|.|.|-      .      -+|+++...|.|
T Consensus        14 ~~sN~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrI   91 (1062)
T KOG1912|consen   14 SRSNRNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRI   91 (1062)
T ss_pred             CcccccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcE
Confidence            33346788999987 7888875 57899999999999999999999999999872      1      256777778999


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcC---CCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCC-CE
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRL-GR  694 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp---~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~-~~  694 (835)
                      .+||...... +..+..|.++|..++|.+   +.++++++-.....|.+|+..+|+....+...   ..++.++|-+ .+
T Consensus        92 il~d~~~~s~-~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh  170 (1062)
T KOG1912|consen   92 ILVDFVLASV-INWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRH  170 (1062)
T ss_pred             EEEEehhhhh-hhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcce
Confidence            9999997664 667788889999999976   34467777777889999999999988766533   4567777754 55


Q ss_pred             EEEEEcCCcEEEEECCC-------CeEEEEEcCCCC------------C-------------eEEEEEcCCCCEEEEEe-
Q 003271          695 ILAAAIENYISILDVET-------QVCRLKLQGHKN------------Q-------------VHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~------------~-------------I~sl~fspdg~~Lasgs-  741 (835)
                      +.+.+..|.+.+.+.-.       ++....-..|..            .             ...++|+|.-+.++... 
T Consensus       171 ~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~  250 (1062)
T KOG1912|consen  171 FCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITF  250 (1062)
T ss_pred             EEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEe
Confidence            66666677776665431       222222222222            0             01245677655444444 


Q ss_pred             CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC--CEEEEEEcCCeEEEEEcCC
Q 003271          742 DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF--PSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg--~~L~sgs~dg~I~IwDl~~  797 (835)
                      ...+.|+|++-.   .++.......+.+.-+.+-|+.  ..|++.-.+|.+.||-.+.
T Consensus       251 prellv~dle~~---~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~  305 (1062)
T KOG1912|consen  251 PRELLVFDLEYE---CCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE  305 (1062)
T ss_pred             ccceEEEcchhh---ceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence            888999999876   6676666666666666666654  5799999999999996544

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.84  E-value=9.3e-09  Score=110.93  Aligned_cols=272  Identities=16%  Similarity=0.121  Sum_probs=178.4

Q ss_pred             CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEE
Q 003271          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLW  582 (835)
Q Consensus       504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~VW  582 (835)
                      ....++.+++.|+.++.|-..                ...-..-++.+..|-+.|.+++.+-||.++.+++. |..++++
T Consensus        18 tka~fiiqASlDGh~KFWkKs----------------~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~Kvf   81 (558)
T KOG0882|consen   18 TKAKFIIQASLDGHKKFWKKS----------------RISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVF   81 (558)
T ss_pred             ehhheEEeeecchhhhhcCCC----------------CccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEE
Confidence            345789999999999999110                01223345667889999999999999999999777 9999999


Q ss_pred             EcCCCeEEEEecc--CCCCeEEEEECCC-C-CEEEEE-ECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEE
Q 003271          583 CTESFTVKSTLEE--HTQWITDVRFSPS-L-SRLATS-SADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLL  656 (835)
Q Consensus       583 d~~t~~~i~~l~~--h~~~V~sv~fspd-g-~~Latg-s~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll  656 (835)
                      |+++...+.-++.  -.+.+.++ .++. - ..|+++ -.++.|.|+|-....+.. ..-.-|..+|.++.+.+.++ .+
T Consensus        82 DvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~D-s~  159 (558)
T KOG0882|consen   82 DVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGD-SA  159 (558)
T ss_pred             EeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeecccc-ce
Confidence            9988766543322  22222221 2221 1 133333 357899999977554333 34456899999999999977 56


Q ss_pred             EEEeCCCcEEEEECCC------CeeeeEe------------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271          657 CSCDNNSEIRYWSINN------GSCAGVF------------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  718 (835)
Q Consensus       657 ~sgs~Dg~I~iwDl~s------~~~~~~~------------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l  718 (835)
                      ++....|.|..|....      .+....+            +....++.|+|++..+.+.+.|..|++++.++++.+..+
T Consensus       160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence            6888899999999873      1111111            244788999999999999999999999999999888776


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          719 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       719 ~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~-~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      ......-.+.   +...         +.+-++.-+.....-+++..++ ..-..++|...+++|+.++--| |+++++.+
T Consensus       240 DE~~t~~~~q---~ks~---------y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~t  306 (558)
T KOG0882|consen  240 DEVLTDAQYQ---PKSP---------YGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDT  306 (558)
T ss_pred             hccchhhhhc---cccc---------cccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeec
Confidence            5322211111   1111         1111111111111112222222 3346678999999998887764 88889988


Q ss_pred             CcEEEeccC
Q 003271          798 NKTLTLSAH  806 (835)
Q Consensus       798 ~~~~~l~~h  806 (835)
                      +.+.++.+.
T Consensus       307 n~v~ri~gk  315 (558)
T KOG0882|consen  307 NTVVRILGK  315 (558)
T ss_pred             CeEEEEecc
Confidence            887765543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.84  E-value=3.1e-06  Score=90.29  Aligned_cols=242  Identities=14%  Similarity=0.128  Sum_probs=163.3

Q ss_pred             EEEEEEeC-CCCEEEEEeCCC-eEEEEEcCCCeEEEEeccCCCCe--EEEEECCCCCEEEEEEC-----CCeEEEEecCC
Q 003271          558 VESCHFSP-DGKLLATGGHDK-KAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTEN  628 (835)
Q Consensus       558 V~sl~fSp-dg~~Lasgs~Dg-~I~VWd~~t~~~i~~l~~h~~~V--~sv~fspdg~~Latgs~-----Dg~I~IWDl~t  628 (835)
                      ...++.+| ++..++.+-.-| ...+||..+++....+....+.-  -.-+|++||++|++.-.     .|.|-|||...
T Consensus         7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcC
Confidence            34578888 555677776655 47889999999887775433322  14679999999999754     48999999995


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCC--CEEEEEEcCCcEEE
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRL--GRILAAAIENYISI  706 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~--~~ll~~s~dg~I~I  706 (835)
                      .-..+..+..|.-....+.+.|+++.+++.-+   -|.                     -+|+.  ..+=..+.+..+.+
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG---GI~---------------------Thpd~GR~kLNl~tM~psL~~  142 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANG---GIE---------------------THPDSGRAKLNLDTMQPSLVY  142 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcC---CCc---------------------cCcccCceecChhhcCCceEE
Confidence            44456778888777888999999976665432   221                     01111  11223344566777


Q ss_pred             EECCCCeEEEE--E--cCCCCCeEEEEEcCCCCEEEEEe-CC-------eEEEEEcCCCCCcceEE----EeecCCCceE
Q 003271          707 LDVETQVCRLK--L--QGHKNQVHSVCWNTSGEYLASVS-DE-------LVRVWSIGSGSKGECIH----ELSCTGNKFH  770 (835)
Q Consensus       707 wDl~t~~~i~~--l--~~h~~~I~sl~fspdg~~Lasgs-Dg-------~I~IwDl~t~~~~~~i~----~l~~~~~~V~  770 (835)
                      .|..+++.+..  +  ..|...|..+++.++|..++..- .+       .|.+++....  ...+.    ....-...+-
T Consensus       143 ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~g  220 (305)
T PF07433_consen  143 LDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIG  220 (305)
T ss_pred             EecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceE
Confidence            88888877765  4  23778899999999999888775 33       3455544331  11111    0123357899


Q ss_pred             EEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          771 SCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       771 sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                      +|++++++..+++++--| .+.+||..+++++....- ..+..++..+++ +++|.+.
T Consensus       221 SIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l-~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  221 SIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL-PDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             EEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc-CceeeeeecCCc-eEEeCCC
Confidence            999999999887777654 999999999998855433 345667766655 6666554

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.84  E-value=5.8e-07  Score=91.71  Aligned_cols=220  Identities=8%  Similarity=0.003  Sum_probs=150.3

Q ss_pred             CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCce
Q 003271          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGAT  684 (835)
Q Consensus       608 dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~  684 (835)
                      ...+|+.|+..|...+|...+..........|...|+-+.=.-+.+.-+..++.|.++++.++.-+......   .....
T Consensus        83 kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~n  162 (344)
T KOG4532|consen   83 KCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQN  162 (344)
T ss_pred             cccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeecccccee
Confidence            345899999999999999998776555555555544322211222333446777888888887654332222   23377


Q ss_pred             EEEEecCCCEEEEEEcCCcEEEEECCCC-eEE-E-EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc--e
Q 003271          685 QMRFQPRLGRILAAAIENYISILDVETQ-VCR-L-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGE--C  758 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i-~-~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~--~  758 (835)
                      ++.+++++.+.++.+....|..|.+... +.+ . ........-.+..|+.....+|++. ||++.|||++......  .
T Consensus       163 s~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~  242 (344)
T KOG4532|consen  163 SLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI  242 (344)
T ss_pred             eeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhh
Confidence            8899999999999999999999988753 222 2 2233445567889999999999999 9999999999763211  1


Q ss_pred             EEEeecCCCceEEEEEeCCCC--EEEEEEcCCeEEEEEcCCCcEE--------EeccCCC-CeeEEEEeCCCCEEEEEEC
Q 003271          759 IHELSCTGNKFHSCVFHPTFP--SLLVIGCYETLELWNMTENKTL--------TLSAHDK-LVSSLAASTVNGMVASASH  827 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~--~L~sgs~dg~I~IwDl~~~~~~--------~l~~h~~-~V~~la~spdg~~LaSgs~  827 (835)
                      -.+-..|.+.+..|.|++.|.  .|+..-.-+.+.+.|+++++-.        ....|.. .|..-.|+.++..+.+.+.
T Consensus       243 sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e  322 (344)
T KOG4532|consen  243 SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNE  322 (344)
T ss_pred             cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccccccc
Confidence            223345789999999998774  4566656679999999988744        1223333 3778888877765555544

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.83  E-value=2.4e-06  Score=105.87  Aligned_cols=274  Identities=11%  Similarity=0.138  Sum_probs=174.1

Q ss_pred             CCEEEEEEeCCCCEEEEEeC--CC--eEEEEEcCCC---eEEEEec-----cCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          556 SKVESCHFSPDGKLLATGGH--DK--KAVLWCTESF---TVKSTLE-----EHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~--Dg--~I~VWd~~t~---~~i~~l~-----~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      ..+...+|......++++..  ..  .|.+......   +.+..+.     ...+.|.++.|.++...++.+..+|.|.+
T Consensus        22 ~~~~~~~~d~~sd~i~~~~~~~~~~~~i~~~~~~~~~~~~~l~s~~~~~~~~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~  101 (928)
T PF04762_consen   22 LPITATAFDSDSDSIYFVLGPNEIDYVIELDRFSQDGSVEVLASWDAPLPDDPNDKIVSFQYLADSESLCIALASGDIIL  101 (928)
T ss_pred             cccceEEEecCCCeEEEEECCCCcceEEEEEeeccCCceeEEEeccccCCcCCCCcEEEEEeccCCCcEEEEECCceEEE
Confidence            35677777776554433332  22  2333322221   2333432     34568999999999999999999999999


Q ss_pred             E----ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---------------CCeee--------
Q 003271          624 W----DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---------------NGSCA--------  676 (835)
Q Consensus       624 W----Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~---------------s~~~~--------  676 (835)
                      +    +..+..  +.....-...|.+++|+||.+ +++..+.+++|.+-+..               ..+.+        
T Consensus       102 ~~~~~~~~~~~--~E~VG~vd~GI~a~~WSPD~E-lla~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe  178 (928)
T PF04762_consen  102 VREDPDPDEDE--IEIVGSVDSGILAASWSPDEE-LLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKE  178 (928)
T ss_pred             EEccCCCCCce--eEEEEEEcCcEEEEEECCCcC-EEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCccc
Confidence            9    555433  444455567899999999987 45455556766663311               00000        


Q ss_pred             eE---------------------------eecCceEEEEecCCCEEEEEEc---C---CcEEEEECCCCeEEEEEcCCCC
Q 003271          677 GV---------------------------FKSGATQMRFQPRLGRILAAAI---E---NYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       677 ~~---------------------------~~~~i~~l~fsp~~~~ll~~s~---d---g~I~IwDl~t~~~i~~l~~h~~  723 (835)
                      ..                           .......++|-.||.++++.+.   .   ..|+||+-+ |......+.-.+
T Consensus       179 TQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g  257 (928)
T PF04762_consen  179 TQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG  257 (928)
T ss_pred             CccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC
Confidence            00                           1113456789999999998875   2   468899876 554444443334


Q ss_pred             CeEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          724 QVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs--D--g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      --.+++|-|.|.+|++..  .  ..|.+|.-+.-...+....+......|..+.|++++..|++...+ .|.+|-..+..
T Consensus       258 Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYH  336 (928)
T PF04762_consen  258 LEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYH  336 (928)
T ss_pred             ccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCE
Confidence            445789999999999887  2  367777654433333333333456789999999999999887755 49999998877


Q ss_pred             EE---Eec-cCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003271          800 TL---TLS-AHDKLVSSLAASTVNG-MVASASHDKCVKIW  834 (835)
Q Consensus       800 ~~---~l~-~h~~~V~~la~spdg~-~LaSgs~DG~V~IW  834 (835)
                      ..   .+. .....+..+.|+|... .|...+.+|.+.++
T Consensus       337 WYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~  376 (928)
T PF04762_consen  337 WYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIY  376 (928)
T ss_pred             EEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEE
Confidence            54   222 2334456699999654 56666665666543

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.82  E-value=1.1e-08  Score=111.96  Aligned_cols=205  Identities=14%  Similarity=0.264  Sum_probs=148.4

Q ss_pred             EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271          590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (835)
Q Consensus       590 i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg  663 (835)
                      +..+.+|...|..++--.+.+.+++++.|++|++|.++...      .+..++..|+.+|.++.|..+.+ .+++|  ||
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr-~i~Sc--D~  804 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR-SIASC--DG  804 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc-eeeec--cC
Confidence            35678999999998887788899999999999999987432      24567889999999999998754 45565  89


Q ss_pred             cEEEEECCCCeeeeEee-----cCceEEEEec--CCCEEEEE-EcCCcEEEEECCCCeEEEEEc-----CCCCCeEEEEE
Q 003271          664 EIRYWSINNGSCAGVFK-----SGATQMRFQP--RLGRILAA-AIENYISILDVETQVCRLKLQ-----GHKNQVHSVCW  730 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~-----~~i~~l~fsp--~~~~ll~~-s~dg~I~IwDl~t~~~i~~l~-----~h~~~I~sl~f  730 (835)
                      .|.+||.--++.+....     +....+..-+  +...++++ +.+.+|+++|.+..+.+..++     +....+.+++.
T Consensus       805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaV  884 (1034)
T KOG4190|consen  805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAV  884 (1034)
T ss_pred             cceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEe
Confidence            99999987776654221     2233333333  23344454 567899999999876655443     34456889999


Q ss_pred             cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE-EEcCCCcEE
Q 003271          731 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL-WNMTENKTL  801 (835)
Q Consensus       731 spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I-wDl~~~~~~  801 (835)
                      .+.|+.++++- .|.|.+.|.+++   +.+..+.........++ .|....|+....|.++.+ |...++...
T Consensus       885 a~~GN~lAa~LSnGci~~LDaR~G---~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgimh  953 (1034)
T KOG4190|consen  885 ADKGNKLAAALSNGCIAILDARNG---KVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMH  953 (1034)
T ss_pred             ccCcchhhHHhcCCcEEEEecCCC---ceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCeee
Confidence            99999999887 999999999998   56665554333333332 355566777778888888 876665543

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.74  E-value=3e-08  Score=112.21  Aligned_cols=205  Identities=20%  Similarity=0.274  Sum_probs=147.2

Q ss_pred             EEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          548 FQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~-~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ...+.+|...|+.+-|.+.. ..|++++.|..|..||+.+.. .+..+..-......|+|+.....+++.+....|+|||
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd  186 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWD  186 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEe
Confidence            44577999999999999854 478999999999999998643 4444444445567899988655666667778899999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eE--eecCceEEEEecCCCEEEEEE--
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GV--FKSGATQMRFQPRLGRILAAA--  699 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~--~~~~i~~l~fsp~~~~ll~~s--  699 (835)
                      ++.+..++..+++|...|..++|.......+.+++.|++|++||..+....  +.  -+.++..-++.|-+.-.++--  
T Consensus       187 ~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~  266 (1081)
T KOG0309|consen  187 LRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMV  266 (1081)
T ss_pred             ccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecccc
Confidence            999998899999999999999998765667789999999999998754322  21  123344455555543332221  


Q ss_pred             ---------cCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCC----------CEEEEEe-CCeEEEEEcCC
Q 003271          700 ---------IENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSG----------EYLASVS-DELVRVWSIGS  752 (835)
Q Consensus       700 ---------~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg----------~~Lasgs-Dg~I~IwDl~t  752 (835)
                               .++....|++.+ .++++.|.||...|....|-..+          --|++=+ |..+++|-+.+
T Consensus       267 G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  267 GGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence                     122222333333 47889999999988777663321          2467777 99999998764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.70  E-value=2.9e-06  Score=96.35  Aligned_cols=253  Identities=8%  Similarity=0.058  Sum_probs=152.0

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC----------CeE-EEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~----------~V~-sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      +..|++++.++.|..+|.++++.+........          .+. .+..  ++..++.++.++.+..+|.++++...+ 
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~~~W~-  145 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGEVAWQ-  145 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCCCccc-
Confidence            45777778889999999999998866543220          000 1111  345777888999999999998885332 


Q ss_pred             eecCCCCeEE-EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEE----Eec--CCCEEEEEEcCCcEEEEE
Q 003271          636 FTGHSTTVMS-LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR----FQP--RLGRILAAAIENYISILD  708 (835)
Q Consensus       636 ~~~h~~~V~s-l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~----fsp--~~~~ll~~s~dg~I~IwD  708 (835)
                      .... ..+.+ ..+. + . .++.+..++.|+.+|.++++.+..+......+.    .+|  .++.+++++.++.+..+|
T Consensus       146 ~~~~-~~~~ssP~v~-~-~-~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d  221 (394)
T PRK11138        146 TKVA-GEALSRPVVS-D-G-LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVL  221 (394)
T ss_pred             ccCC-CceecCCEEE-C-C-EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEE
Confidence            2222 22221 1222 2 3 444567789999999999998877654321110    011  245688888899999999


Q ss_pred             CCCCeEEEEEcCCC----C---CeEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271          709 VETQVCRLKLQGHK----N---QVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  778 (835)
Q Consensus       709 l~t~~~i~~l~~h~----~---~I~sl~fsp--dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg  778 (835)
                      ..+++.+.......    .   ....+..+|  .+..+++++ ++.+..+|..++   +.+-....  .....+.  ..+
T Consensus       222 ~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG---~~~W~~~~--~~~~~~~--~~~  294 (394)
T PRK11138        222 MEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG---QIVWKREY--GSVNDFA--VDG  294 (394)
T ss_pred             ccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC---CEEEeecC--CCccCcE--EEC
Confidence            99988776543110    0   011111122  233454455 999999999988   33332221  1111222  245


Q ss_pred             CEEEEEEcCCeEEEEEcCCCcEEE-eccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          779 PSLLVIGCYETLELWNMTENKTLT-LSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       779 ~~L~sgs~dg~I~IwDl~~~~~~~-l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..|++++.++.|..+|..+++.+- ..... ....+..+.  +.+|+.++.||.|++.|
T Consensus       295 ~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~l~v~~~~G~l~~ld  351 (394)
T PRK11138        295 GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGYLVVGDSEGYLHWIN  351 (394)
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCEEEEEeCCCEEEEEE
Confidence            678899999999999999998762 21111 112222222  45677778888877654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.68  E-value=1e-05  Score=90.55  Aligned_cols=257  Identities=14%  Similarity=0.118  Sum_probs=154.5

Q ss_pred             eCCCCEEEEEe---------CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          564 SPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       564 Spdg~~Lasgs---------~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      |||+++++...         ..+.+.|||+++++....... ...+....|+|+|+.++... ++.|.+++..++.....
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            67888877642         246789999999776644433 67789999999999999885 57899999876643222


Q ss_pred             Eeec-------C---------CCCeEEEEEcCCCCcEEEEEeCCCc----------------------------------
Q 003271          635 TFTG-------H---------STTVMSLDFHPSKEDLLCSCDNNSE----------------------------------  664 (835)
Q Consensus       635 ~~~~-------h---------~~~V~sl~fsp~g~~ll~sgs~Dg~----------------------------------  664 (835)
                      +..+       -         -+.-..+-|+|+++.+++.--++..                                  
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v  158 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRV  158 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCce
Confidence            2222       0         1223567899999887765544443                                  


Q ss_pred             -EEEEECCCCeeeeEe-e-------cCceEEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEEEEcC-CCCCe---E
Q 003271          665 -IRYWSINNGSCAGVF-K-------SGATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQG-HKNQV---H  726 (835)
Q Consensus       665 -I~iwDl~s~~~~~~~-~-------~~i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~l~~-h~~~I---~  726 (835)
                       +.++|+.+++....- .       .-+..+.|.+++..+++.-.+     -.+.++|..++.+...+.. ....|   .
T Consensus       159 ~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~  238 (353)
T PF00930_consen  159 SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD  238 (353)
T ss_dssp             EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS
T ss_pred             EEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec
Confidence             333444444332111 1       115677888888855554433     2477778877644333321 22332   2


Q ss_pred             EEEEc-CCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcC-----CeEEEEEc
Q 003271          727 SVCWN-TSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY-----ETLELWNM  795 (835)
Q Consensus       727 sl~fs-pdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~s-v~fspdg~~L~sgs~d-----g~I~IwDl  795 (835)
                      .+.|. +++..++..+  +|  .|++++...+    ....+......|.. +.|++++..|+..+..     ..|+..++
T Consensus       239 ~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~----~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~  314 (353)
T PF00930_consen  239 PPHFLGPDGNEFLWISERDGYRHLYLYDLDGG----KPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSL  314 (353)
T ss_dssp             EEEE-TTTSSEEEEEEETTSSEEEEEEETTSS----EEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEET
T ss_pred             ccccccCCCCEEEEEEEcCCCcEEEEEccccc----ceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEe
Confidence            45554 6665555544  77  6666666654    34455555666744 6788888877766553     26777788


Q ss_pred             C-CCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          796 T-ENKTLTLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       796 ~-~~~~~~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                      . .+....+.........+.|||++++++-.+
T Consensus       315 ~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~~~  346 (353)
T PF00930_consen  315 DSGGEPKCLTCEDGDHYSASFSPDGKYYVDTY  346 (353)
T ss_dssp             TETTEEEESSTTSSTTEEEEE-TTSSEEEEEE
T ss_pred             CCCCCeEeccCCCCCceEEEECCCCCEEEEEE
Confidence            8 777777665554446999999999777544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.68  E-value=3.6e-06  Score=86.08  Aligned_cols=229  Identities=14%  Similarity=0.075  Sum_probs=149.9

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEE-EEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCC--CC
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHS--TT  642 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i-~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~--~~  642 (835)
                      ..+||.|+..|...+|...+.+.. .....|...|+-+.=..+ ...+..++.|.++++.+++.+...   +..|.  -.
T Consensus        84 c~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~---~~~h~~~~~  160 (344)
T KOG4532|consen   84 CVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNK---FAVHNQNLT  160 (344)
T ss_pred             ccEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccc---ceeeccccc
Confidence            448999999999999999865543 334445554433322222 335777889999999988754421   11222  33


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE
Q 003271          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL  716 (835)
Q Consensus       643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~--~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~  716 (835)
                      +.++.++++++ +.++.++...|.+|.+....  .++...    .+..+..|+.....++++..||.+.|||++......
T Consensus       161 ~ns~~~snd~~-~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm  239 (344)
T KOG4532|consen  161 QNSLHYSNDPS-WGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPM  239 (344)
T ss_pred             eeeeEEcCCCc-eEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccch
Confidence            88999999977 55566667889999886532  222222    346678899999999999999999999999653322


Q ss_pred             -----EEcCCCCCeEEEEEcCCCC--EEEEEe-CCeEEEEEcCCCCCcceEEEee-----cCCCceEEEEEeCCCCEEEE
Q 003271          717 -----KLQGHKNQVHSVCWNTSGE--YLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       717 -----~l~~h~~~I~sl~fspdg~--~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-----~~~~~V~sv~fspdg~~L~s  783 (835)
                           .-..|.+.+..+.|++.|.  +|+... -+.+.|.|+++......+....     .....|....|+.++..+.+
T Consensus       240 ~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v  319 (344)
T KOG4532|consen  240 AEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDV  319 (344)
T ss_pred             hhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCccccc
Confidence                 2234889999999998663  333333 6789999999985544333221     11233667777777776666


Q ss_pred             EEcCCeEEEEEcCCCcE
Q 003271          784 IGCYETLELWNMTENKT  800 (835)
Q Consensus       784 gs~dg~I~IwDl~~~~~  800 (835)
                      .+.+ .+.-|++.....
T Consensus       320 ~~e~-~~ae~ni~srsR  335 (344)
T KOG4532|consen  320 KNEL-QGAEYNILSRSR  335 (344)
T ss_pred             ccch-hhheeeccccce
Confidence            6554 344555544433

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.65  E-value=4.6e-07  Score=92.10  Aligned_cols=199  Identities=12%  Similarity=0.171  Sum_probs=125.1

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      .+..++++..+..+.++     ..++.+....|....+  ...++++..|.++-.+-+.+--+..++++..||.+.+++.
T Consensus        46 ~~~~lf~~e~~~~~ss~-----g~~r~~~~~~~~rt~~--i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~  118 (319)
T KOG4714|consen   46 AEYILFTGETSSQIISL-----GKGRGRCISLWERDDG--IDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFST  118 (319)
T ss_pred             hhheeecccchhheeee-----ccceEEEechhhcccC--cCceeeeeccCCCCCcccccccCCceEecCCCceEEEEec
Confidence            34566777777777766     2222233333333322  3345555566666556666666778999999999999998


Q ss_pred             CCCeE-EEEeccCCCCeEEEEECCCCCEEEEEEC-----CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          585 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       585 ~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~-----Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      +.... ...+..-...-.+.++...++.|.++..     -+..++|++...+....... ....|.+++-+|.-.+++++
T Consensus       119 ~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~v~~l~~hp~qq~~v~c  197 (319)
T KOG4714|consen  119 DKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDAVTALCSHPAQQHLVCC  197 (319)
T ss_pred             hHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc-ccccchhhhCCcccccEEEE
Confidence            75211 1111111111122233334444444321     23466777765443222222 22349999999998999999


Q ss_pred             EeCCCcEEEEECCCCeee----eEeecCceEEEEecCC-CEEEEEEcCCcEEEEECCC
Q 003271          659 CDNNSEIRYWSINNGSCA----GVFKSGATQMRFQPRL-GRILAAAIENYISILDVET  711 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~----~~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t  711 (835)
                      |+.||.+-+||.+.....    ...+.++..+.|+|.. ..|++++.||.+.-||..+
T Consensus       198 gt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  198 GTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            999999999999987432    2345678899999964 6899999999999999875

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.65  E-value=2.4e-07  Score=95.94  Aligned_cols=234  Identities=18%  Similarity=0.289  Sum_probs=147.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce----eEEeecCC------------CCeEEEEEcCC-CCcEEEE
Q 003271          596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----LRTFTGHS------------TTVMSLDFHPS-KEDLLCS  658 (835)
Q Consensus       596 h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~----~~~~~~h~------------~~V~sl~fsp~-g~~ll~s  658 (835)
                      ..+.|++|.|...|.+|++|...|.|.+|.-+....+    ...+.+|.            ..|..|.|..+ +..-+..
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3467999999999999999999999999986654321    12234443            35777887654 3444556


Q ss_pred             EeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEE---------cCCcEEEEECCCCeEEEEEcCCCCCeEEEE
Q 003271          659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAA---------IENYISILDVETQVCRLKLQGHKNQVHSVC  729 (835)
Q Consensus       659 gs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s---------~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~  729 (835)
                      .+.|.+|++|.+.............+.-.-+|-++-+.+..         .|..|..+     .+...-..|...|.++.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~-----p~rvyaNaH~yhiNSiS  179 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAK-----PCRVYANAHPYHINSIS  179 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEec-----cceeccccceeEeeeee
Confidence            67799999999975432211111111111122221111100         00011110     11111235888899999


Q ss_pred             EcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCC-----CceEEEEEeCCC-CEEEEEEcCCeEEEEEcCCCcEE--
Q 003271          730 WNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG-----NKFHSCVFHPTF-PSLLVIGCYETLELWNMTENKTL--  801 (835)
Q Consensus       730 fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~-----~~V~sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~~--  801 (835)
                      |+.|...++++.|=.|.+|++.-......+..+..|.     ..|++..|+|.. ..+...+..|.|++-|++...+.  
T Consensus       180 ~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn  259 (460)
T COG5170         180 FNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDN  259 (460)
T ss_pred             ecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccC
Confidence            9999999999889999999987654333444444443     457888999975 44556677889999999843211  


Q ss_pred             -------Ee--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          802 -------TL--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       802 -------~l--------~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                             .+        .+-...|.++.|+++|++|++-+. -+|+|||
T Consensus       260 ~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwD  307 (460)
T COG5170         260 SKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWD  307 (460)
T ss_pred             chhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEe
Confidence                   11        122356889999999999998765 4899997

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.63  E-value=1.8e-05  Score=82.25  Aligned_cols=225  Identities=17%  Similarity=0.187  Sum_probs=132.5

Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCC--eEEEEeccC---CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~i~~l~~h---~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      ++.+.||++||+.- |..|.|=..++.  .++.+....   ...=.-++|+||+.+||.+...|+|++||+.....  ..
T Consensus         3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~l--f~   79 (282)
T PF15492_consen    3 LALSSDGKLLAILQ-DQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSEL--FV   79 (282)
T ss_pred             eeecCCCcEEEEEe-ccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccccee--EE
Confidence            56788999888765 677777655431  222222222   22346799999999999999999999999985332  22


Q ss_pred             ee-------cCCCCeEEEEEcCCC-----CcEEEEEeCCCcEEEEECCC-----CeeeeEe------ecCceEEEEecCC
Q 003271          636 FT-------GHSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINN-----GSCAGVF------KSGATQMRFQPRL  692 (835)
Q Consensus       636 ~~-------~h~~~V~sl~fsp~g-----~~ll~sgs~Dg~I~iwDl~s-----~~~~~~~------~~~i~~l~fsp~~  692 (835)
                      +.       .-...|..+.|.+..     ...|+.-..+|.++-|-+..     ....+.+      +.++.++.++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence            11       123456777776532     22344555678777776532     2333333      3469999999999


Q ss_pred             CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEE--EEEe-CC------eEEEEEcCCCCCcceEEEee
Q 003271          693 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL--ASVS-DE------LVRVWSIGSGSKGECIHELS  763 (835)
Q Consensus       693 ~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~L--asgs-Dg------~I~IwDl~t~~~~~~i~~l~  763 (835)
                      +.|++|+....=      ++.    -......+++-..-.+..+.  ++.. |+      +..+|.+-+.   .......
T Consensus       160 ~LLlVgG~~~~~------~~~----s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~---~~fs~~~  226 (282)
T PF15492_consen  160 RLLLVGGCEQNQ------DGM----SKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSF---KFFSRQG  226 (282)
T ss_pred             CEEEEeccCCCC------Ccc----ccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccce---eeeeccc
Confidence            998888764320      000    00011122222211111111  0111 11      1123333221   1222223


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      .....|..+..+|||..|++...+|.|.+|++..-+..
T Consensus       227 ~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~  264 (282)
T PF15492_consen  227 QEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ  264 (282)
T ss_pred             cCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence            35678999999999999999999999999999876655

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.8e-06  Score=92.57  Aligned_cols=249  Identities=14%  Similarity=0.146  Sum_probs=148.6

Q ss_pred             EEEEEcCCCeEEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 003271          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (835)
Q Consensus       579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~  657 (835)
                      |++.+..+.+....+..|...|.+++|+|..+ ++..++.+..|+|.|+++.. ++..+..+ ..+++++|+-+..++|+
T Consensus       175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~-~vssy~a~-~~~wSC~wDlde~h~IY  252 (463)
T KOG1645|consen  175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC-VVSSYIAY-NQIWSCCWDLDERHVIY  252 (463)
T ss_pred             eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccce-eeeheecc-CCceeeeeccCCcceeE
Confidence            66777667776677778889999999999866 78889999999999999865 46666666 78999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeee-Ee-----ecCceEEE------EecCCCEEEEEEcCCcEEEEECC----CCeEEEEEcCC
Q 003271          658 SCDNNSEIRYWSINNGSCAG-VF-----KSGATQMR------FQPRLGRILAAAIENYISILDVE----TQVCRLKLQGH  721 (835)
Q Consensus       658 sgs~Dg~I~iwDl~s~~~~~-~~-----~~~i~~l~------fsp~~~~ll~~s~dg~I~IwDl~----t~~~i~~l~~h  721 (835)
                      +|..+|.|.|||++..+-.. .+     ..++..++      ..+.++.+++...+  +..|++.    ...++..+. .
T Consensus       253 aGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele-~  329 (463)
T KOG1645|consen  253 AGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELE-P  329 (463)
T ss_pred             EeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccC-C
Confidence            99999999999998754321 11     12233322      33445555555443  2233332    222222222 2


Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CC---eEE---E-EEcCCCCCcceEEEeecC-CCce------EEEEEeCCCCEEEEEE
Q 003271          722 KNQVHSVCWNTSGEYLASVS--DE---LVR---V-WSIGSGSKGECIHELSCT-GNKF------HSCVFHPTFPSLLVIG  785 (835)
Q Consensus       722 ~~~I~sl~fspdg~~Lasgs--Dg---~I~---I-wDl~t~~~~~~i~~l~~~-~~~V------~sv~fspdg~~L~sgs  785 (835)
                      .+...++.+.+..+.++...  +.   .++   . -|..++.  .....-..+ +.+-      ..+.-.++..+|+..+
T Consensus       330 pG~cismqy~~~snh~l~tyRs~pn~p~~r~il~~~d~~dG~--pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~g  407 (463)
T KOG1645|consen  330 PGICISMQYHGVSNHLLLTYRSNPNFPQSRFILGRIDFRDGF--PVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVG  407 (463)
T ss_pred             CcceeeeeecCccceEEEEecCCCCCccceeeeeeeccccCc--eeeeecccccCCcccccccccceeccccccEEEEec
Confidence            33444445544334443332  11   111   1 1111111  000111111 1110      1122234455555444


Q ss_pred             c-CCeEEEEEcCCCcEEEeccCCCCeeEEEEeC-CC-CEEEEEECCCcEEEeC
Q 003271          786 C-YETLELWNMTENKTLTLSAHDKLVSSLAAST-VN-GMVASASHDKCVKIWK  835 (835)
Q Consensus       786 ~-dg~I~IwDl~~~~~~~l~~h~~~V~~la~sp-dg-~~LaSgs~DG~V~IWd  835 (835)
                      . .+.+.+||..+.+++.......+|.+++... ++ .+|++-. |..++||+
T Consensus       408 d~tn~lil~D~~s~evvQ~l~~~epv~Dicp~~~n~~syLa~LT-d~~v~Iyk  459 (463)
T KOG1645|consen  408 DSTNELILQDPHSFEVVQTLALSEPVLDICPNDTNGSSYLALLT-DDRVHIYK  459 (463)
T ss_pred             CCcceeEEeccchhheeeecccCcceeecceeecCCcchhhhee-cceEEEEe
Confidence            4 3489999999999986666678898888654 33 3666554 55788764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.61  E-value=1.1e-05  Score=84.24  Aligned_cols=209  Identities=12%  Similarity=0.047  Sum_probs=131.4

Q ss_pred             CCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCE
Q 003271          618 DRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGR  694 (835)
Q Consensus       618 Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~  694 (835)
                      +|+|..||..+++.....-... .....+..+ +++. .+++++.++.|+.||..+|+.+..+...  +... ....++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~   78 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDGG-RVYVASGDGNLYALDAKTGKVLWRFDLPGPISGA-PVVDGGR   78 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EETT-EEEEEETTSEEEEEETTTSEEEEEEECSSCGGSG-EEEETTE
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeCC-EEEEEcCCCEEEEEECCCCCEEEEeeccccccce-eeecccc
Confidence            6889999998887643332211 122222222 2334 3445678999999999999988776632  2222 2445678


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEE-cCCC---CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc-
Q 003271          695 ILAAAIENYISILDVETQVCRLKL-QGHK---NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK-  768 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l-~~h~---~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~-  768 (835)
                      +++++.++.|+.+|..+++.+... ....   ..........++..++++. ++.|..+|++++   +.+......... 
T Consensus        79 v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~  155 (238)
T PF13360_consen   79 VYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTG---KLLWKYPVGEPRG  155 (238)
T ss_dssp             EEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTT---EEEEEEESSTT-S
T ss_pred             cccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCC---cEEEEeecCCCCC
Confidence            888888999999999999998884 3221   1122222333377777777 999999999998   555555443322 


Q ss_pred             ---------eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          769 ---------FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       769 ---------V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                               +..-.+..++ .+++++.++.+..+|+.+++.+. ......+..+ ...++..|+.++.|+.|.+||
T Consensus       156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w-~~~~~~~~~~-~~~~~~~l~~~~~~~~l~~~d  228 (238)
T PF13360_consen  156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLW-SKPISGIYSL-PSVDGGTLYVTSSDGRLYALD  228 (238)
T ss_dssp             S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEE-EECSS-ECEC-EECCCTEEEEEETTTEEEEEE
T ss_pred             CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEE-EecCCCccCC-ceeeCCEEEEEeCCCEEEEEE
Confidence                     1122222344 78888888854444999999663 2223334332 346677888888999999886

...

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.57  E-value=3e-08  Score=113.90  Aligned_cols=200  Identities=17%  Similarity=0.268  Sum_probs=150.1

Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-cE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-EI  665 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-~I  665 (835)
                      .+..++|..|+...+|++|+-+.++|++|+..|.|++|++.++.. ...+.+|.+.|+.+.-+.+|...+.+++... ..
T Consensus      1091 Fr~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~-e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSM-EESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred             cccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccc-cccccccccccccccccCCcceeeeeccccCchH
Confidence            455667788999999999999999999999999999999999875 6778899999999999999987776666555 67


Q ss_pred             EEEECCC-CeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE-cC---CCCCeEEEEEcCCCCEEEEE
Q 003271          666 RYWSINN-GSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-QG---HKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       666 ~iwDl~s-~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l-~~---h~~~I~sl~fspdg~~Lasg  740 (835)
                      .+|++.+ +...+.| .+..++.|+.....-+.|+......+||+.++.+..++ .+   ....-.++.|+|+.++|+- 
T Consensus      1170 aLW~~~s~~~~~Hsf-~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln- 1247 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSF-DEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN- 1247 (1516)
T ss_pred             HHhccccccCccccc-cccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee-
Confidence            7899865 3333333 34567778777666677777788999999998766553 22   2223367889999887763 


Q ss_pred             eCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          741 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       741 sDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                       ||  .+||++..   ..|+.+.... ....-.|+|.|..+++-+     .|||+++-+.+
T Consensus      1248 -dG--vLWDvR~~---~aIh~FD~ft-~~~~G~FHP~g~eVIINS-----EIwD~RTF~lL 1296 (1516)
T KOG1832|consen 1248 -DG--VLWDVRIP---EAIHRFDQFT-DYGGGGFHPSGNEVIINS-----EIWDMRTFKLL 1296 (1516)
T ss_pred             -Cc--eeeeeccH---HHHhhhhhhe-ecccccccCCCceEEeec-----hhhhhHHHHHH
Confidence             44  58999887   5555554332 223347999999888754     68999887655

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.56  E-value=1.3e-05  Score=96.55  Aligned_cols=242  Identities=12%  Similarity=0.143  Sum_probs=150.8

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      .+.|.++.|..+..-++.+..+|.|.+.|.++.... ....-...|.+++|+||...++..+.++++.+-+..=.-...+
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~  146 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEK  146 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhcc
Confidence            367999999999999999999999999988875433 2233457899999999999999999888877654321000001


Q ss_pred             Eee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEeecCceEEEEecCCCEEEEEEc----C-Cc
Q 003271          635 TFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFKSGATQMRFQPRLGRILAAAI----E-NY  703 (835)
Q Consensus       635 ~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~~~~~~i~~l~fsp~~~~ll~~s~----d-g~  703 (835)
                      .+.   ...+....+-|-.....+  -|+ .|.....+....+..   .....+-+.+.|--+|.++++...    + ..
T Consensus       147 ~L~~d~~~~sk~v~VGwGrkeTqf--rgs-~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rk  223 (1265)
T KOG1920|consen  147 PLDADDERKSKFVNVGWGRKETQF--RGS-EGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRK  223 (1265)
T ss_pred             ccccccccccccceecccccceee--ecc-hhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCcee
Confidence            110   011222233333221111  111 121111111111110   012344667899999888888442    3 78


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  779 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~  779 (835)
                      |+|||-+ +..-..-.....--.+++|-|.|..+++..    |+.|.+|.-+.-........+......+..++|+.++.
T Consensus       224 irV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wns~sd  302 (1265)
T KOG1920|consen  224 IRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSD  302 (1265)
T ss_pred             EEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchheeeecCCCC
Confidence            9999987 433222222334456899999999998864    66799998665433344434444445589999999999


Q ss_pred             EEEEE---EcCCeEEEEEcCCCcEE
Q 003271          780 SLLVI---GCYETLELWNMTENKTL  801 (835)
Q Consensus       780 ~L~sg---s~dg~I~IwDl~~~~~~  801 (835)
                      .|++.   .....|++|-+.+....
T Consensus       303 iLAv~~~~~e~~~v~lwt~~NyhWY  327 (1265)
T KOG1920|consen  303 ILAVVTSNLENSLVQLWTTGNYHWY  327 (1265)
T ss_pred             ceeeeecccccceEEEEEecCeEEE
Confidence            88884   33446999998876644

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.53  E-value=5.3e-05  Score=78.89  Aligned_cols=187  Identities=14%  Similarity=0.152  Sum_probs=110.2

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-------CCCCeEEEEECCC------CCEEEEEECCCeEEEE
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPS------LSRLATSSADRTVRVW  624 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-------h~~~V~sv~fspd------g~~Latgs~Dg~I~IW  624 (835)
                      =.-++||||+.+||.+...|+|+|||+.... +..+..       -...|..+.|.+-      ...|++-..+|.++-|
T Consensus        46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy  124 (282)
T PF15492_consen   46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSY  124 (282)
T ss_pred             heEEEECCCCcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeE
Confidence            4568999999999999999999999987533 333322       2345667777542      2256677788888888


Q ss_pred             ecCCC---Cc-eeEEe---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEE--
Q 003271          625 DTENP---DY-SLRTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRI--  695 (835)
Q Consensus       625 Dl~t~---~~-~~~~~---~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~l--  695 (835)
                      -+..+   +. ....+   ..+...|.++.|+|..+.++++|.....-..        ......++++-++-.+..+.  
T Consensus       125 ~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~--------s~a~~~GLtaWRiL~~~Pyyk~  196 (282)
T PF15492_consen  125 LVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGM--------SKASSCGLTAWRILSDSPYYKQ  196 (282)
T ss_pred             EEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCcc--------ccccccCceEEEEcCCCCcEEE
Confidence            76432   11 12222   2346789999999997655655544332100        01111222222222111111  


Q ss_pred             EEEEcCCc------EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271          696 LAAAIENY------ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  753 (835)
Q Consensus       696 l~~s~dg~------I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~  753 (835)
                      ++...|+.      ..+|.+-+.+...........|..+..+|||.+|++.. +|.|.+|++.+-
T Consensus       197 v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL  261 (282)
T PF15492_consen  197 VTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL  261 (282)
T ss_pred             ccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence            11111111      12233222222222223567899999999999999999 999999999876

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.52  E-value=1.1e-06  Score=89.29  Aligned_cols=238  Identities=12%  Similarity=0.161  Sum_probs=133.2

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE------------EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVK------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i------------~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      |+.+.|+.+ ..|+++..++.+..+....+.++            +.+..|.++-.+-+.+--+..++++..||.+.+++
T Consensus        39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s  117 (319)
T KOG4714|consen   39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS  117 (319)
T ss_pred             EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence            555556543 35666666666655544333322            22323433333333333466789999999999998


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEE
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      .+......+........-.+.++...++ ++.++    .+-.|+..                              +..+
T Consensus       118 ~~~~~~~~~~i~~~~~~~as~~~~~~~~-~i~s~----~~g~~n~~------------------------------d~~~  162 (319)
T KOG4714|consen  118 TDKDLALMSRIPSIHSGSASRKICRHGN-SILSG----GCGNWNAQ------------------------------DNFY  162 (319)
T ss_pred             chHHHhhhhhcccccccccccceeeccc-EEecC----CcceEeec------------------------------ccee
Confidence            8752111111111001111111222222 12111    12222221                              3445


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEE
Q 003271          706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLL  782 (835)
Q Consensus       706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las-gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~  782 (835)
                      +|+++..+....-......|+++|-+|.-..+++ |+ ||.+.+||.+...  .....+..|+.+++.+-|+|.. ..|+
T Consensus       163 a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--~p~S~l~ahk~~i~eV~FHpk~p~~Lf  240 (319)
T KOG4714|consen  163 ANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--MPVSLLKAHKAEIWEVHFHPKNPEHLF  240 (319)
T ss_pred             eecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEccccc--chHHHHHHhhhhhhheeccCCCchhee
Confidence            5555533222211112234889999887655544 45 8999999999873  4566778899999999999964 6799


Q ss_pred             EEEcCCeEEEEEcCCCcEE---------------------E----eccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          783 VIGCYETLELWNMTENKTL---------------------T----LSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       783 sgs~dg~I~IwDl~~~~~~---------------------~----l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +++.||.+.-||..+.-+-                     .    +......|+++.  --|..|++|++-+.|++++
T Consensus       241 t~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfD--V~g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  241 TCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFD--VLGPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeee--ccCceEEeccccceEEEec
Confidence            9999999999998742211                     0    001111233333  3477899999999998874

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=3.4e-06  Score=90.58  Aligned_cols=244  Identities=14%  Similarity=0.139  Sum_probs=150.4

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRV  623 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~I  623 (835)
                      .....+.+|...|..++|||..+ +|..++.+.+|+|.|+++...+..+..| ..+++++|.-|. .+|+.|...|.|.|
T Consensus       184 kssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  184 KSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV  262 (463)
T ss_pred             chhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence            33457788999999999999877 7888999999999999999999888877 789999998864 56777788999999


Q ss_pred             EecCCCCceeEEeec--CCCCeEEEEEcCCC-----CcEEEEEeCCCcEEEEECCCC----eeeeEee--cCceEEEEec
Q 003271          624 WDTENPDYSLRTFTG--HSTTVMSLDFHPSK-----EDLLCSCDNNSEIRYWSINNG----SCAGVFK--SGATQMRFQP  690 (835)
Q Consensus       624 WDl~t~~~~~~~~~~--h~~~V~sl~fsp~g-----~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~--~~i~~l~fsp  690 (835)
                      ||++..+..+..+.+  ...+|..|+.-+.+     ..+++....  .+..|++.-.    .++..+.  +...++.+++
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt--~l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALT--VLQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeeh--hhhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            999977654444433  23455555443321     123333332  3455665422    1222222  2244455556


Q ss_pred             CCCEEEEEEcCC-------cEE-EEECCCCeEEEEEcC-C-CCCe------EEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003271          691 RLGRILAAAIEN-------YIS-ILDVETQVCRLKLQG-H-KNQV------HSVCWNTSGEYLASVS--DELVRVWSIGS  752 (835)
Q Consensus       691 ~~~~ll~~s~dg-------~I~-IwDl~t~~~i~~l~~-h-~~~I------~sl~fspdg~~Lasgs--Dg~I~IwDl~t  752 (835)
                      ..+++++....+       .|- -.|..++..+..... + .+.-      ..+.-.++.++|+..+  .+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            556766655431       111 123334444432221 1 1111      1122235567776655  45999999998


Q ss_pred             CCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEEcC
Q 003271          753 GSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       753 ~~~~~~i~~l~~~~~~V~sv~fsp-dg~~L~sgs~dg~I~IwDl~  796 (835)
                      .   +.+.++... .+|..++... ++.-++..-.|..++||..+
T Consensus       421 ~---evvQ~l~~~-epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  421 F---EVVQTLALS-EPVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             h---heeeecccC-cceeecceeecCCcchhhheecceEEEEecC
Confidence            7   666666543 6777776543 44445555566678887654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.50  E-value=1.1e-05  Score=91.90  Aligned_cols=222  Identities=12%  Similarity=0.136  Sum_probs=126.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe
Q 003271          595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS  674 (835)
Q Consensus       595 ~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~  674 (835)
                      ...-....+.++|++++++++ .||...||.....+  ...    .+.-..++|.+.++  +++-.....|.++.--+.+
T Consensus        30 ~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r--~k~----~G~g~~~vw~~~n~--yAv~~~~~~I~I~kn~~~~  100 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWR--NKA----FGSGLSFVWSSRNR--YAVLESSSTIKIYKNFKNE  100 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTE--EEE----EEE-SEEEE-TSSE--EEEE-TTS-EEEEETTEE-
T ss_pred             CCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCc--ccc----cCceeEEEEecCcc--EEEEECCCeEEEEEcCccc
Confidence            344567899999999999884 57778888743322  111    13345678888543  5566668889997433333


Q ss_pred             eeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC-
Q 003271          675 CAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG-  753 (835)
Q Consensus       675 ~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~-  753 (835)
                      ....+..+...-.+.. |. ++....++.|.+||+.+++.+..+..  ..|..|.|+++|.+++..++..+.|++.... 
T Consensus       101 ~~k~i~~~~~~~~If~-G~-LL~~~~~~~i~~yDw~~~~~i~~i~v--~~vk~V~Ws~~g~~val~t~~~i~il~~~~~~  176 (443)
T PF04053_consen  101 VVKSIKLPFSVEKIFG-GN-LLGVKSSDFICFYDWETGKLIRRIDV--SAVKYVIWSDDGELVALVTKDSIYILKYNLEA  176 (443)
T ss_dssp             TT-----SS-EEEEE--SS-SEEEEETTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S-SEEEEEE-HHH
T ss_pred             cceEEcCCcccceEEc-Cc-EEEEECCCCEEEEEhhHcceeeEEec--CCCcEEEEECCCCEEEEEeCCeEEEEEecchh
Confidence            3334444433333333 44 45555556899999999999999873  3489999999999999999888888876532 


Q ss_pred             -------CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          754 -------SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       754 -------~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                             .....+..+......|.+.+|..+  .++..+.. .|+.  +..|+...+..-+.++.=+.+.+..+.|+...
T Consensus       177 ~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld~~~yllgy~~~~~~ly~~D  251 (443)
T PF04053_consen  177 VAAIPEEGVEDAFELIHEISERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLDKPLYLLGYLPKENRLYLID  251 (443)
T ss_dssp             HHHBTTTB-GGGEEEEEEE-S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-SS--EEEEEETTTTEEEEE-
T ss_pred             cccccccCchhceEEEEEecceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcCCceEEEEEEccCCEEEEEE
Confidence                   001133344433678899999877  44444444 7776  56677666655567788888888778899999


Q ss_pred             CCCcEEEe
Q 003271          827 HDKCVKIW  834 (835)
Q Consensus       827 ~DG~V~IW  834 (835)
                      .|+.|..+
T Consensus       252 r~~~v~~~  259 (443)
T PF04053_consen  252 RDGNVISY  259 (443)
T ss_dssp             TT--EEEE
T ss_pred             CCCCEEEE
Confidence            99888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.49  E-value=2.3e-05  Score=90.71  Aligned_cols=255  Identities=11%  Similarity=0.084  Sum_probs=149.8

Q ss_pred             CCCCEEEEEeC-CCeEEEEEcCCCeEEEEecc-CCCCeEEEE-------------------ECCCCCEEEE-EECCCeEE
Q 003271          565 PDGKLLATGGH-DKKAVLWCTESFTVKSTLEE-HTQWITDVR-------------------FSPSLSRLAT-SSADRTVR  622 (835)
Q Consensus       565 pdg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~-------------------fspdg~~Lat-gs~Dg~I~  622 (835)
                      .||+||+.-.. ...|-..+++..++-..++- ....+..++                   +.+||+.+.. .-..+.+.
T Consensus       139 ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~vS  218 (635)
T PRK02888        139 YDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLFT  218 (635)
T ss_pred             cceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEEE
Confidence            37888888764 55677777776655443321 111222222                   3345544422 22345677


Q ss_pred             EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEE
Q 003271          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       623 IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs---~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s  699 (835)
                      +.|.++.+.......+  .....++++++++.+++++.   ...++..-+..+...+..+.-. ....+.++|++.++  
T Consensus       219 vID~etmeV~~qV~Vd--gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~-~iea~vkdGK~~~V--  293 (635)
T PRK02888        219 AVDAETMEVAWQVMVD--GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIA-RIEEAVKAGKFKTI--  293 (635)
T ss_pred             EEECccceEEEEEEeC--CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchH-HHHHhhhCCCEEEE--
Confidence            7777765432232222  24466788999887777762   2234444444332222222111 01134456676665  


Q ss_pred             cCCcEEEEECCC----C-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------cceEEEee
Q 003271          700 IENYISILDVET----Q-VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------GECIHELS  763 (835)
Q Consensus       700 ~dg~I~IwDl~t----~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~---------~~~i~~l~  763 (835)
                      .++.|.++|.++    + ..+..+. -....+.+.++|||+++++++  +.+|.|+|+.+.+.         ...+.+..
T Consensus       294 ~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve  372 (635)
T PRK02888        294 GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE  372 (635)
T ss_pred             CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence            367899999998    3 4444443 567788999999999999888  88999999987531         01223333


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC----------CcEE-EeccC-----CCCeeEEEEeCCCCEEEEEE
Q 003271          764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE----------NKTL-TLSAH-----DKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~----------~~~~-~l~~h-----~~~V~~la~spdg~~LaSgs  826 (835)
                      . +......+|.++|....+.--|..|..||+..          ..++ ++.-|     ......=.-.+||++|++.+
T Consensus       373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             c-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            2 44456678999998777777899999999876          2333 23222     22222222367888888765

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.49  E-value=1.9e-06  Score=92.71  Aligned_cols=157  Identities=10%  Similarity=0.125  Sum_probs=108.8

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCC----eEEEEeccCCCCeEEEEECCCCCEEEEE---ECCCeEEEEecCCCC
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSLSRLATS---SADRTVRVWDTENPD  630 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~i~~l~~h~~~V~sv~fspdg~~Latg---s~Dg~I~IWDl~t~~  630 (835)
                      +..+.+++++++||++..++...++++...    +++.... -...-+++.|..+...+..+   +....+.+|....  
T Consensus        65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~-v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~--  141 (390)
T KOG3914|consen   65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSC-VPKRPTAISFIREDTSVLVADKAGDVYSFDILSADS--  141 (390)
T ss_pred             ccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEee-cccCcceeeeeeccceEEEEeecCCceeeeeecccc--
Confidence            455667888999999988888777776543    2332222 12223444454444444444   3445566666554  


Q ss_pred             ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                      .+.+...+|-+-++.|+|+||+. +|++++.|..|++-....-..+..+-    .-+..+++.++ ..|++++.|++|++
T Consensus       142 ~~~~~~lGhvSml~dVavS~D~~-~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~  219 (390)
T KOG3914|consen  142 GRCEPILGHVSMLLDVAVSPDDQ-FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRL  219 (390)
T ss_pred             cCcchhhhhhhhhheeeecCCCC-EEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEE
Confidence            33577789999999999999975 77799999999998776655554443    22777777665 55899999999999


Q ss_pred             EECCCCeEEEEEc
Q 003271          707 LDVETQVCRLKLQ  719 (835)
Q Consensus       707 wDl~t~~~i~~l~  719 (835)
                      ||+++++.+..+.
T Consensus       220 Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  220 WDITSGKLLDTCD  232 (390)
T ss_pred             EecccCCcccccc
Confidence            9999999886553

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.48  E-value=0.00011  Score=79.43  Aligned_cols=256  Identities=11%  Similarity=0.129  Sum_probs=162.1

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC----------CCeEEEEecCCCCceeEEeecC--C----
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENPDYSLRTFTGH--S----  640 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~----------Dg~I~IWDl~t~~~~~~~~~~h--~----  640 (835)
                      +.|+|+|.++++.+..+..  +..-.+..+|+++.+++++.          .-.|.+||..+-..........  .    
T Consensus        17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            4799999999998877753  33445778999999887643          4479999998865322211111  1    


Q ss_pred             CCeEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECC-CCeEEEE-
Q 003271          641 TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVE-TQVCRLK-  717 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~i~~-  717 (835)
                      .....+.++.+++.+++.- +---.|.|.|+...+.+..+..+-+...+-.....+.+.|.||.+..+.+. .++...+ 
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~  174 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKS  174 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEE
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEee
Confidence            1233467788887666543 334579999999999999888776555554444678899999999998887 4444322 


Q ss_pred             ---EcCCCCCeE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC----------CCceEEEEEeCCCCEEE
Q 003271          718 ---LQGHKNQVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       718 ---l~~h~~~I~-sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~----------~~~V~sv~fspdg~~L~  782 (835)
                         |.....++. .-.+...+..++..+ +|.|+-.|+.... ......+...          .+...-+++++....|+
T Consensus       175 t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~-~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rly  253 (342)
T PF06433_consen  175 TKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDS-AKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLY  253 (342)
T ss_dssp             EEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSS-EEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEE
T ss_pred             ccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCc-ccccCcccccCccccccCcCCcceeeeeeccccCeEE
Confidence               222222222 334444444444445 9999999987653 1222222211          12234467887776666


Q ss_pred             EEEcC--------C--eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003271          783 VIGCY--------E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  835 (835)
Q Consensus       783 sgs~d--------g--~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~DG~V~IWd  835 (835)
                      +.-..        +  .|.+||+.+++.+....-+..+.+|.++.+.+ +|++.+ .++.|.|||
T Consensus       254 vLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D  318 (342)
T PF06433_consen  254 VLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYALSAGDGTLDVYD  318 (342)
T ss_dssp             EEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEEETTTTEEEEEE
T ss_pred             EEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEEcCCCCeEEEEe
Confidence            64321        1  78899999999985544456788999999877 665544 578999986

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.47  E-value=0.00024  Score=72.77  Aligned_cols=256  Identities=11%  Similarity=0.083  Sum_probs=135.4

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s  645 (835)
                      -|++++.|+..|.+++.+.++|+....+.....-=......+++..+..++.|++.+..|..+... +...+...+...+
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~c-VykskcgG~~f~s  140 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGC-VYKSKCGGGTFVS  140 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccce-EEecccCCceecc
Confidence            467899999999999999999987766643322112234566888999999999999999998664 3333333233333


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeee--eEe--ecCce--EEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc
Q 003271          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVF--KSGAT--QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  719 (835)
Q Consensus       646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~--~~~i~--~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~  719 (835)
                      -++.|-...++ .+...|.|.--..+.+...  ..+  ..++.  .++.   +..+..++.||.+.-+| ..++.+..+.
T Consensus       141 P~i~~g~~sly-~a~t~G~vlavt~~~~~~~~~w~~~~~~PiF~splcv---~~sv~i~~VdG~l~~f~-~sG~qvwr~~  215 (354)
T KOG4649|consen  141 PVIAPGDGSLY-AAITAGAVLAVTKNPYSSTEFWAATRFGPIFASPLCV---GSSVIITTVDGVLTSFD-ESGRQVWRPA  215 (354)
T ss_pred             ceecCCCceEE-EEeccceEEEEccCCCCcceehhhhcCCccccCceec---cceEEEEEeccEEEEEc-CCCcEEEeec
Confidence            44455223333 3444566665555554221  111  11211  1222   23466667777777777 5566666544


Q ss_pred             CCCCCeEE-EEEc-CCCCEEEEEeCC---------eEEEEEcCCCCCcceEEEeecCCCceEEEEEe-C---CCCEEEEE
Q 003271          720 GHKNQVHS-VCWN-TSGEYLASVSDE---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-P---TFPSLLVI  784 (835)
Q Consensus       720 ~h~~~I~s-l~fs-pdg~~LasgsDg---------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs-p---dg~~L~sg  784 (835)
                       ..++|.. -+-+ |....|..+.++         .-.+|...++   ...+......   ..+.++ +   ..++|..+
T Consensus       216 -t~GpIf~~Pc~s~Ps~q~i~~~~~~Cf~~~~p~~ghL~w~~~~g---~t~~vy~~p~---l~F~~h~~~~S~~~ll~~~  288 (354)
T KOG4649|consen  216 -TKGPIFMEPCESRPSCQQISLENENCFCAPLPIAGHLLWATQSG---TTLHVYLSPK---LRFDLHSPGISYPKLLRRS  288 (354)
T ss_pred             -CCCceecccccCCCcceEEEEecCCeEEEeccccceEEEEecCC---cEEEEEeCcc---cceeccCCCCcchhhhhhh
Confidence             2333321 1111 332333333322         2335555544   1111111100   011111 1   13457778


Q ss_pred             EcCCeEEEEEcCCCcEEEeccCCCCe---eEEEE------eC--CCCEEEEEECCCcEEEeC
Q 003271          785 GCYETLELWNMTENKTLTLSAHDKLV---SSLAA------ST--VNGMVASASHDKCVKIWK  835 (835)
Q Consensus       785 s~dg~I~IwDl~~~~~~~l~~h~~~V---~~la~------sp--dg~~LaSgs~DG~V~IWd  835 (835)
                      +.||++.|.-++.. +.....|.+.+   ..+.+      +|  -+..|+.|+.|..|+-||
T Consensus       289 s~dgkv~il~~~~s-l~~~~s~~g~lq~~~~~el~~eIFsSPvii~grl~igcRDdYv~cld  349 (354)
T KOG4649|consen  289 SGDGKVMILMTSKS-LAEISSNGGELQNLEAIELSNEIFSSPVIIDGRLLIGCRDDYVRCLD  349 (354)
T ss_pred             cCCCcEEEEEeccc-ccccccCCCccceEEEeecCcccccCCeEEccEEEEEEccCeEEEEe
Confidence            88999888844322 22223333322   22211      12  024577888999999987

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.46  E-value=6.3e-05  Score=87.88  Aligned_cols=256  Identities=10%  Similarity=0.079  Sum_probs=149.7

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC------CeE--EEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------WIT--DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~------~V~--sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      +..+++++.++.|+.+|..+++.+..+.....      .+.  .+.+. ++..++.++.++.|+.+|.++++...+ +..
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~~W~-~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQVWK-FGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCEeee-ecC
Confidence            33566777789999999999998877643322      010  11111 225788888999999999999885333 221


Q ss_pred             CCCC-----e-EEEEEcCCCCcEEEEEe---------CCCcEEEEECCCCeeeeEeecCc--------------------
Q 003271          639 HSTT-----V-MSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFKSGA--------------------  683 (835)
Q Consensus       639 h~~~-----V-~sl~fsp~g~~ll~sgs---------~Dg~I~iwDl~s~~~~~~~~~~i--------------------  683 (835)
                      ....     + .+..+..  . +++.++         .++.|+.+|..+++.+..+....                    
T Consensus       139 ~~~~~~~~~i~ssP~v~~--~-~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g  215 (488)
T cd00216         139 NDQVPPGYTMTGAPTIVK--K-LVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGG  215 (488)
T ss_pred             CCCcCcceEecCCCEEEC--C-EEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCC
Confidence            1110     1 1112221  2 333332         36889999999999887664310                    


Q ss_pred             ----eEEEEecCCCEEEEEEcCC------------------cEEEEECCCCeEEEEEcCCCCCeE------EEEEc----
Q 003271          684 ----TQMRFQPRLGRILAAAIEN------------------YISILDVETQVCRLKLQGHKNQVH------SVCWN----  731 (835)
Q Consensus       684 ----~~l~fsp~~~~ll~~s~dg------------------~I~IwDl~t~~~i~~l~~h~~~I~------sl~fs----  731 (835)
                          ....+.+.++.+++++.++                  .|.-+|+++++.+..+..-...+.      ...+.    
T Consensus       216 ~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~  295 (488)
T cd00216         216 GTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKP  295 (488)
T ss_pred             CCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccc
Confidence                1234555678888887665                  799999999999988652111110      01111    


Q ss_pred             CCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE------------------EcCCe
Q 003271          732 TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI------------------GCYET  789 (835)
Q Consensus       732 pdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg------------------s~dg~  789 (835)
                      -++.   ++++++ +|.+..+|..++   +.+-.....   ...++.+|  ..++++                  ..+|.
T Consensus       296 ~~g~~~~~V~~g~~~G~l~ald~~tG---~~~W~~~~~---~~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~  367 (488)
T cd00216         296 KDGKPVPAIVHAPKNGFFYVLDRTTG---KLISARPEV---EQPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG  367 (488)
T ss_pred             cCCCeeEEEEEECCCceEEEEECCCC---cEeeEeEee---ccccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence            2333   466666 999999999998   444333211   11123333  233332                  23578


Q ss_pred             EEEEEcCCCcEEEeccCC---------CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          790 LELWNMTENKTLTLSAHD---------KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       790 I~IwDl~~~~~~~l~~h~---------~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |.-+|+.+++.+-.....         .....-...-.+.+|+.++.||.|+.+|
T Consensus       368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald  422 (488)
T cd00216         368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFD  422 (488)
T ss_pred             EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEE
Confidence            999999999887222111         1111111112456788888899888764

The alignment model contains an 8-bladed beta-propeller.

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=98.45  E-value=2e-07  Score=62.59  Aligned_cols=27  Identities=41%  Similarity=0.685  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhc
Q 003271           10 KMLDVYIYDYLLKRKLHASAKAFQTEG   36 (835)
Q Consensus        10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~   36 (835)
                      +.||.+|||||+++||.+||++|.+|+
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            479999999999999999999999985

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=5.8e-06  Score=96.49  Aligned_cols=260  Identities=17%  Similarity=0.222  Sum_probs=170.5

Q ss_pred             eEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCC-CCCCCcccc------cccccCCCceeEEEEEecC-C
Q 003271          483 SLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPD-DADPRDRVG------RSAEVGKGFTFTEFQLIPA-S  554 (835)
Q Consensus       483 s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~-~~~~~~~~~------~~~~~~~g~~~~~i~~l~g-H  554 (835)
                      +.+.+.....|  .+++..++.++.++-.|+..+.+..++... ....+-.+-      +......+...-....++. -
T Consensus        45 ~~L~~~~~~~G--~vS~v~fd~~eel~w~G~~gG~stS~~~s~~~~yssf~v~s~~~v~~~~~~~~~i~~ls~~alr~~~  122 (1118)
T KOG1275|consen   45 AELISVGASYG--TVSSVHFDLHEELLWRGSSGGHSTSLLLSHRTGYSSFQVHSIDGVRRIEPTESGIFTLSKTALRATT  122 (1118)
T ss_pred             cceeeeccccc--cccccccCchHHhheecccCCceeeeecccccceEEEEEeccchhhhhhhhhhhheeeeHHHhhhhh
Confidence            44444444444  677888888999888999988888874432 111111110      1111111110000011100 0


Q ss_pred             CCCEEEEEE---e---------CCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271          555 TSKVESCHF---S---------PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  622 (835)
Q Consensus       555 ~~~V~sl~f---S---------pdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~  622 (835)
                      ...+....|   +         -++..++.|+.-..+..+|+.+.+..+...-....|+-++.  +++++++|...|+|.
T Consensus       123 r~gl~~~~~~~~s~~~M~~~~~~~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~  200 (1118)
T KOG1275|consen  123 RQGLPVFDFTCPSMTKMASSLHMGPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY--NNRNLFCGDTRGTVF  200 (1118)
T ss_pred             ccCceeecccCCCHHHHHHHhccCCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe--cCcEEEeecccceEE
Confidence            001111111   1         13456777888888999999998887776555545655554  678999999999999


Q ss_pred             EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEee--cCceEEEEecC
Q 003271          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFK--SGATQMRFQPR  691 (835)
Q Consensus       623 IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~---------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~  691 (835)
                      +-|..+.+. ++++..|.+.|.+++..  |+ ++++|+.         |..|+|||++..+.+..+.  .+..-+.|+|.
T Consensus       201 LrD~~s~~~-iht~~aHs~siSDfDv~--GN-lLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Ps  276 (1118)
T KOG1275|consen  201 LRDPNSFET-IHTFDAHSGSISDFDVQ--GN-LLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPS  276 (1118)
T ss_pred             eecCCcCce-eeeeeccccceeeeecc--CC-eEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhccc
Confidence            999998764 89999999999988876  33 6667764         4568999999877665443  23455677776


Q ss_pred             C-CEEEEEEcCCcEEEEE---CCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEc
Q 003271          692 L-GRILAAAIENYISILD---VETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI  750 (835)
Q Consensus       692 ~-~~ll~~s~dg~I~IwD---l~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl  750 (835)
                      - ..+++++..|.+.+.|   +.+. ..+..+......+..+++++++..++.+. +|.|.+|.-
T Consensus       277 l~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~  341 (1118)
T KOG1275|consen  277 LTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD  341 (1118)
T ss_pred             ccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence            4 5677788889999999   4333 23344444556699999999999999999 999999973

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.43  E-value=6.7e-06  Score=95.95  Aligned_cols=175  Identities=12%  Similarity=0.168  Sum_probs=129.5

Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEeecCc-eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271          655 LLCSCDNNSEIRYWSINNGSCAGVFKSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS  733 (835)
Q Consensus       655 ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i-~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd  733 (835)
                      .++.|+....+..+|+++.+..+...... .+.....++..+++|...|+|.+-|.++.+.++++..|.+.|..+.  -.
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSDfD--v~  226 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISDFD--VQ  226 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEecCcEEEeecccceEEeecCCcCceeeeeeccccceeeee--cc
Confidence            45567777788899999888776655332 2233344567888999999999999999999999999999997665  46


Q ss_pred             CCEEEEEe----------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEEcCCeEEEEEc---CCCc
Q 003271          734 GEYLASVS----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIGCYETLELWNM---TENK  799 (835)
Q Consensus       734 g~~Lasgs----------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs~dg~I~IwDl---~~~~  799 (835)
                      |+.|++|+          |..|+|||++....   +..+..+.+ ..-+.|+|.- ..+++++..|...+.|.   .+..
T Consensus       227 GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra---l~PI~~~~~-P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~  302 (1118)
T KOG1275|consen  227 GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA---LSPIQFPYG-PQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP  302 (1118)
T ss_pred             CCeEEEeecccccccccccchhhhhhhhhhhc---cCCcccccC-chhhhhcccccceEEEEecccceeeccccccCCCc
Confidence            88888876          33689999998733   333222222 2556788865 46888899999999983   3322


Q ss_pred             --EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          800 --TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       800 --~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        ...+......+..+++++++..++.|..+|.|.+|-
T Consensus       303 ~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  303 AGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             cceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence              123334455699999999999999999999999993

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.37  E-value=0.00071  Score=77.38  Aligned_cols=241  Identities=15%  Similarity=0.099  Sum_probs=138.8

Q ss_pred             EEEEEEeCCCCEEEEE-eCC----CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC-----------eE
Q 003271          558 VESCHFSPDGKLLATG-GHD----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----------TV  621 (835)
Q Consensus       558 V~sl~fSpdg~~Lasg-s~D----g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg-----------~I  621 (835)
                      +..+++||||++||.+ +..    ..|+|+|+++++.+...-... ....+.|.++++.|+....+.           .|
T Consensus       126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v  204 (414)
T PF02897_consen  126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQV  204 (414)
T ss_dssp             EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEE
T ss_pred             eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcEE
Confidence            4467899999998865 333    359999999998775321111 122399999988877665443           37


Q ss_pred             EEEecCCCCce-eEEeecCCCC--eEEEEEcCCCCcEEEEEeCC---CcEEEEECCCC-----eeeeEee--cCceEEEE
Q 003271          622 RVWDTENPDYS-LRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN---SEIRYWSINNG-----SCAGVFK--SGATQMRF  688 (835)
Q Consensus       622 ~IWDl~t~~~~-~~~~~~h~~~--V~sl~fsp~g~~ll~sgs~D---g~I~iwDl~s~-----~~~~~~~--~~i~~l~f  688 (835)
                      ++|++.+.... ...+......  ...+..+++++.+++.....   ..|++.|+..+     .......  ..+....-
T Consensus       205 ~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~  284 (414)
T PF02897_consen  205 YRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD  284 (414)
T ss_dssp             EEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred             EEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence            88888876543 3344443333  56888999999888766544   35888888874     2222222  22222222


Q ss_pred             ecCCCEEEEEEc----CCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcc
Q 003271          689 QPRLGRILAAAI----ENYISILDVETQV---CRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGE  757 (835)
Q Consensus       689 sp~~~~ll~~s~----dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~  757 (835)
                      +. ++.+++.+.    .+.|...++....   ....+..+...+.-..+...+.+|+...  ++  .|++|++..+   .
T Consensus       285 ~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~---~  360 (414)
T PF02897_consen  285 HH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDG---K  360 (414)
T ss_dssp             EE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-T---E
T ss_pred             cc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCC---c
Confidence            22 555555443    3578788888664   2334444555433333334455566554  55  8999999822   2


Q ss_pred             eEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCcEEEe
Q 003271          758 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTL  803 (835)
Q Consensus       758 ~i~~l~~-~~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l  803 (835)
                      ....+.. ..+.|..+...++++.+...-.+    .+|+.||+.+++...+
T Consensus       361 ~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~~  411 (414)
T PF02897_consen  361 ESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTLL  411 (414)
T ss_dssp             EEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEEE
T ss_pred             EEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEEE
Confidence            3333332 23445666656666554443332    3899999999887644

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.37  E-value=0.00049  Score=77.83  Aligned_cols=248  Identities=11%  Similarity=0.129  Sum_probs=171.8

Q ss_pred             EEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCCcEE
Q 003271          579 AVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLL  656 (835)
Q Consensus       579 I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~-~~V~sl~fsp~g~~ll  656 (835)
                      +.+++..+......+..+. ....+.+.+++..+.... ....+.+.+... .. ......-. ..-..+++++.+..++
T Consensus        13 ~~v~~~~~~~~~~~~~~~~-~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~-~~~~~~~g~~~p~~i~v~~~~~~vy   89 (381)
T COG3391          13 VSVINTGTNKVTAAISLGR-GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NT-VTQSLSVGGVYPAGVAVNPAGNKVY   89 (381)
T ss_pred             eEEEeecccEEEEEeecCC-CCceeEEcCccCEEEEEeecCceeeeccccc-ce-eeeeccCCCccccceeeCCCCCeEE
Confidence            6677766666665554443 556778888885544443 333455555442 21 12211111 3456788899988888


Q ss_pred             EEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEc---CCcEEEEECCCCeEEEEEcCCCCCeEEEEEc
Q 003271          657 CSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAI---ENYISILDVETQVCRLKLQGHKNQVHSVCWN  731 (835)
Q Consensus       657 ~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~---dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs  731 (835)
                      +....+..|.+.|..+.+.......  ....++++++++.++++..   ++.+.+.|..+.+.+.....-..+ ..++++
T Consensus        90 v~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~  168 (381)
T COG3391          90 VTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVD  168 (381)
T ss_pred             EecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEEC
Confidence            8888889999999888887776653  3678999999999888877   689999999998888775433334 889999


Q ss_pred             CCCCEEEEEe--CCeEEEEEcCCCCCcceEE-E---eecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEE
Q 003271          732 TSGEYLASVS--DELVRVWSIGSGSKGECIH-E---LSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLT  802 (835)
Q Consensus       732 pdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~-~---l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~  802 (835)
                      |+|..++.+.  ++.|.++|....   .... .   ..........+.+.+++.++++.....   .+.+.|..++....
T Consensus       169 p~g~~vyv~~~~~~~v~vi~~~~~---~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~  245 (381)
T COG3391         169 PDGNKVYVTNSDDNTVSVIDTSGN---SVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTA  245 (381)
T ss_pred             CCCCeEEEEecCCCeEEEEeCCCc---ceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEE
Confidence            9999887777  889999997665   2221 1   122344567889999999887776654   99999999988875


Q ss_pred             ec-cCCC-CeeEEEEeCCCCEEEEEECC-CcEEE
Q 003271          803 LS-AHDK-LVSSLAASTVNGMVASASHD-KCVKI  833 (835)
Q Consensus       803 l~-~h~~-~V~~la~spdg~~LaSgs~D-G~V~I  833 (835)
                      .. .-.. ....+.++|+|+.+...... +.|.+
T Consensus       246 ~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~v  279 (381)
T COG3391         246 TDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSV  279 (381)
T ss_pred             eccccccCCCCceeECCCCCEEEEEecCCCeEEE
Confidence            42 2222 56778899999987776433 44443

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.33  E-value=0.0011  Score=73.14  Aligned_cols=266  Identities=14%  Similarity=0.098  Sum_probs=136.8

Q ss_pred             EEeCCCCEEEEEe-CCC--eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271          562 HFSPDGKLLATGG-HDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       562 ~fSpdg~~Lasgs-~Dg--~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      +|.+||+.|+.++ .||  .+.+.|+++++......+-........++++.+.|+-......|+-.|+.+.+. ...+..
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~-~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEE-RVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--E-EEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcE-EEEEEC
Confidence            6788997655554 454  566778888877755543323333566788888887766667899999998764 344554


Q ss_pred             CCCCeEEEEEc--CCCCcEEEEEeC----------------------CCcEEEEECCCCeeeeEeecC--ceEEEEecCC
Q 003271          639 HSTTVMSLDFH--PSKEDLLCSCDN----------------------NSEIRYWSINNGSCAGVFKSG--ATQMRFQPRL  692 (835)
Q Consensus       639 h~~~V~sl~fs--p~g~~ll~sgs~----------------------Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~  692 (835)
                      ....+-...|.  .++. .++..-.                      ...|...|+.+++....+...  +..+.|+|..
T Consensus       121 p~~~~g~gt~v~n~d~t-~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~d  199 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCT-KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTD  199 (386)
T ss_dssp             -TTEEEEEEEEE-TTSS-EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTE
T ss_pred             CcccccccceeeCCCcc-EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCC
Confidence            55555445553  3333 3332211                      135677788888876666654  6889999998


Q ss_pred             CEEEEEEcCCc-----EEEEECCC-CeEEEEEcCCC--CCeEEEEEcCCCCEEEEEe---C---CeEEEEEcCCCCCcce
Q 003271          693 GRILAAAIENY-----ISILDVET-QVCRLKLQGHK--NQVHSVCWNTSGEYLASVS---D---ELVRVWSIGSGSKGEC  758 (835)
Q Consensus       693 ~~ll~~s~dg~-----I~IwDl~t-~~~i~~l~~h~--~~I~sl~fspdg~~Lasgs---D---g~I~IwDl~t~~~~~~  758 (835)
                      ..+++-|.+|-     -+||-+++ +.....+..+.  ..+..=-|.+||..|.--+   .   ..|.-+|+.++.. ..
T Consensus       200 p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~-~~  278 (386)
T PF14583_consen  200 PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGER-RR  278 (386)
T ss_dssp             EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--E-EE
T ss_pred             CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCc-eE
Confidence            88888776541     25554442 33333333332  2344457899998776533   2   2677778877632 11


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCC----------------eEEEEEcCCCcEEEeccCCC-----------Cee
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYE----------------TLELWNMTENKTLTLSAHDK-----------LVS  811 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg----------------~I~IwDl~~~~~~~l~~h~~-----------~V~  811 (835)
                      +...    ....-+-.++++..++-=+.|.                -|+++++..+....+..|..           .=.
T Consensus       279 ~~~~----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hP  354 (386)
T PF14583_consen  279 LMEM----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHP  354 (386)
T ss_dssp             EEEE-----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBSSTT--
T ss_pred             EEeC----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCCccCCC
Confidence            2111    1334455578888554433331                56778888877654444421           124


Q ss_pred             EEEEeCCCCEEE-EEECCCcEEEe
Q 003271          812 SLAASTVNGMVA-SASHDKCVKIW  834 (835)
Q Consensus       812 ~la~spdg~~La-Sgs~DG~V~IW  834 (835)
                      ...|+||+++|+ ++..+|...||
T Consensus       355 hp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  355 HPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             --EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             CCccCCCCCEEEEECCCCCCccEE
Confidence            678999999665 55567776665

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=9.1e-05  Score=86.58  Aligned_cols=205  Identities=15%  Similarity=0.255  Sum_probs=139.6

Q ss_pred             EECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCC-----
Q 003271          604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNG-----  673 (835)
Q Consensus       604 ~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~-----  673 (835)
                      +|++.+..++.|+.+|.|.+++-.-  ..++.+..+...|...-|.-++..++++.+.|+     .|+|||++..     
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~s~--~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s  107 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNSSF--QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS  107 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecccc--eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence            3677888999999999888876442  224666666666444445555556776766554     5899999643     


Q ss_pred             -eee---eEee-------cCceEEEEecCCCEEEEEEcCCcEEEEECC--C--CeEEEEEcCCCCCeEEEEEcCCCCE-E
Q 003271          674 -SCA---GVFK-------SGATQMRFQPRLGRILAAAIENYISILDVE--T--QVCRLKLQGHKNQVHSVCWNTSGEY-L  737 (835)
Q Consensus       674 -~~~---~~~~-------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~--t--~~~i~~l~~h~~~I~sl~fspdg~~-L  737 (835)
                       .++   +.+.       .++++++++.+-..+++|-.+|.|..+.-+  .  +...........+|+.+.+..++.. +
T Consensus       108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence             233   1221       347889999998999999999999998432  1  2222222235679999999998877 4


Q ss_pred             EEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE-EEec-cCCCCeeEE
Q 003271          738 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLS-AHDKLVSSL  813 (835)
Q Consensus       738 asgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~-~~l~-~h~~~V~~l  813 (835)
                      ++++...|.+|.+... . .....+..++..+.|..+++....+++++. ..|++|+...... ..+. +|...+..+
T Consensus       188 Fv~Tt~~V~~y~l~gr-~-p~~~~ld~~G~~lnCss~~~~t~qfIca~~-e~l~fY~sd~~~~cfaf~~g~kk~~~~~  262 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGR-T-PSLKVLDNNGISLNCSSFSDGTYQFICAGS-EFLYFYDSDGRGPCFAFEVGEKKEMLVF  262 (933)
T ss_pred             EEEecceeEEEEecCC-C-cceeeeccCCccceeeecCCCCccEEEecC-ceEEEEcCCCcceeeeecCCCeEEEEEE
Confidence            5555788999999843 2 345557788889999999887664555544 4799999876553 3555 666554433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.31  E-value=2.6e-06  Score=92.47  Aligned_cols=205  Identities=15%  Similarity=0.158  Sum_probs=146.2

Q ss_pred             cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC--CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECC
Q 003271          595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSIN  671 (835)
Q Consensus       595 ~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t--~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~  671 (835)
                      -|.+.|+.+... ..+++++++.||.++.|.-..  +...+..+..|...|.+++.+-++ .++++.+. |..++++|++
T Consensus         7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence            477777776544 457999999999999997653  223345667788889999988885 47778666 9999999998


Q ss_pred             CCeeeeEeecC--ceEEEEecCCC----EEEEEE-cCCcEEEEECCCCe-EEE-EEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          672 NGSCAGVFKSG--ATQMRFQPRLG----RILAAA-IENYISILDVETQV-CRL-KLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       672 s~~~~~~~~~~--i~~l~fsp~~~----~ll~~s-~dg~I~IwDl~t~~-~i~-~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                      +-..+..++..  ...+.|....+    .+++.. .++.|.|+|-...- ... .-.-|..+|.++.+++.+..+++.. 
T Consensus        85 n~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~  164 (558)
T KOG0882|consen   85 NFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDI  164 (558)
T ss_pred             ccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccc
Confidence            87665444322  12222322222    344433 46899999987543 222 3334999999999999999999888 


Q ss_pred             CCeEEEEEcCCC-CC-----------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          742 DELVRVWSIGSG-SK-----------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       742 Dg~I~IwDl~t~-~~-----------~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      .|.|..|..... ..           ...+..+........++.|+|++..+.+.+.|..|++++..+++++
T Consensus       165 ~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklv  236 (558)
T KOG0882|consen  165 SGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLV  236 (558)
T ss_pred             cceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhh
Confidence            899999988731 00           0111122334567789999999999999999999999999988754

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.31  E-value=0.00013  Score=84.62  Aligned_cols=182  Identities=8%  Similarity=-0.048  Sum_probs=117.9

Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC----CcEEEEECCCCeEEEEEcCC
Q 003271          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQGH  721 (835)
Q Consensus       648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~~i~~l~~h  721 (835)
                      +.|+|+.+..+.-..+.+.+.|..+.+....+.  .....+.++++++++++.+.+    ..+...+..+...+..+.. 
T Consensus       200 lpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni-  278 (635)
T PRK02888        200 LPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNI-  278 (635)
T ss_pred             cCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEch-
Confidence            344555444444455677888888777666554  335668899999999888742    2344444433222222211 


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCC--CcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCC
Q 003271          722 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS--KGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN  798 (835)
Q Consensus       722 ~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~--~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~  798 (835)
                       ..+  -.+.++|++... .++.|.++|.++..  ....+..+ .-......|.++|||+++++++. +.+|.|+|+.+.
T Consensus       279 -~~i--ea~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yI-PVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~  353 (635)
T PRK02888        279 -ARI--EEAVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYV-PVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKL  353 (635)
T ss_pred             -HHH--HHhhhCCCEEEE-CCCEEEEEECCccccCCcceEEEE-ECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhh
Confidence             001  133457887665 46789999998710  01233333 35677899999999999988877 669999999875


Q ss_pred             cE------------EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          799 KT------------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       799 ~~------------~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.            +....-.......+|.++|..+.|.--|..|..||
T Consensus       354 k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn  402 (635)
T PRK02888        354 DDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWN  402 (635)
T ss_pred             hhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEe
Confidence            52            22222234456788999999888888999999996

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=1.7e-06  Score=91.22  Aligned_cols=159  Identities=13%  Similarity=0.165  Sum_probs=120.3

Q ss_pred             EEEeCCCcEEEEECCCCeeee-EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCC-----eEEEEEcCCCCCeEEEEE
Q 003271          657 CSCDNNSEIRYWSINNGSCAG-VFKSGATQMRFQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCW  730 (835)
Q Consensus       657 ~sgs~Dg~I~iwDl~s~~~~~-~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~h~~~I~sl~f  730 (835)
                      ++.+.+-.|.+-|++++..-. ..++.+..+.|.-.++.++.|+..|.|..+|++..     .+...+. |.+.|+++..
T Consensus       228 fs~G~sqqv~L~nvetg~~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rly-h~Ssvtslq~  306 (425)
T KOG2695|consen  228 FSVGLSQQVLLTNVETGHQQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLY-HDSSVTSLQI  306 (425)
T ss_pred             ecccccceeEEEEeecccccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEE-cCcchhhhhh
Confidence            445557788889998875432 23466888889988999999999999999999864     4555555 8999999977


Q ss_pred             cC-CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEE--EEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-
Q 003271          731 NT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHS--CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-  805 (835)
Q Consensus       731 sp-dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~s--v~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-  805 (835)
                      -. ++.+|.+.+ +|+|++||++.-+..+.+..+.+|-+.-.-  +.+++....|++++.|-..+||.++.+.++.... 
T Consensus       307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPF  386 (425)
T ss_pred             hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCC
Confidence            66 677787777 999999999987544558888888655433  3456777889999999999999999999884332 


Q ss_pred             ----CCCCeeEEEEe
Q 003271          806 ----HDKLVSSLAAS  816 (835)
Q Consensus       806 ----h~~~V~~la~s  816 (835)
                          .+..+.+++|.
T Consensus       387 ~~s~~e~d~~sv~~~  401 (425)
T KOG2695|consen  387 PYSASEVDIPSVAFD  401 (425)
T ss_pred             CCccccccccceehh
Confidence                23345566654

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.30  E-value=2.1e-06  Score=90.53  Aligned_cols=157  Identities=15%  Similarity=0.218  Sum_probs=120.3

Q ss_pred             EEEEeCC--CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC----Ccee
Q 003271          560 SCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP----DYSL  633 (835)
Q Consensus       560 sl~fSpd--g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~----~~~~  633 (835)
                      .|+|+-+  |-. ++.+.+-.|-+-|++++..- .|. ..+.|.++.|.-.+.+++.|+..|.|.++|++..    ..+.
T Consensus       216 ~CawSlni~gyh-fs~G~sqqv~L~nvetg~~q-sf~-sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a  292 (425)
T KOG2695|consen  216 SCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQQ-SFQ-SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCA  292 (425)
T ss_pred             hhhhhhccceee-ecccccceeEEEEeeccccc-ccc-cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcce
Confidence            3456542  323 45556778889999886543 332 5677999999988899999999999999999865    3333


Q ss_pred             EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEeecCceEEE-----EecCCCEEEEEEcCCcEE
Q 003271          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKSGATQMR-----FQPRLGRILAAAIENYIS  705 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~~~~i~~l~-----fsp~~~~ll~~s~dg~I~  705 (835)
                      ..+ -|.+.|+++.........+.+.+.+|+|++||++--++   +..+.+++...+     +.+..+.+++++.|...+
T Consensus       293 ~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytR  371 (425)
T KOG2695|consen  293 QRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTR  371 (425)
T ss_pred             EEE-EcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEE
Confidence            443 48899999988774455677888899999999988777   778887766544     566778899999999999


Q ss_pred             EEECCCCeEEEEEcC
Q 003271          706 ILDVETQVCRLKLQG  720 (835)
Q Consensus       706 IwDl~t~~~i~~l~~  720 (835)
                      ||.++.+..+.++.-
T Consensus       372 iWsl~~ghLl~tipf  386 (425)
T KOG2695|consen  372 IWSLDSGHLLCTIPF  386 (425)
T ss_pred             EEecccCceeeccCC
Confidence            999999988877653

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=2.2e-05  Score=90.96  Aligned_cols=180  Identities=14%  Similarity=0.207  Sum_probs=126.0

Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 003271          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~  676 (835)
                      .+.++|++++  +++|+.|+.+|.|++++....-   .....|...      .-+|+ ++++|+.||+|.|..+-+.+..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~---~~~~~~s~~------~~~Ge-y~asCS~DGkv~I~sl~~~~~~  106 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP---KTNFDHSSS------ILEGE-YVASCSDDGKVVIGSLFTDDEI  106 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc---ccccccccc------ccCCc-eEEEecCCCcEEEeeccCCccc
Confidence            4567777775  5689999999999999987432   333344433      44555 7789999999999999877655


Q ss_pred             --eEeecCceEEEEecC-----CCEEEEEEcCCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 003271          677 --GVFKSGATQMRFQPR-----LGRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRV  747 (835)
Q Consensus       677 --~~~~~~i~~l~fsp~-----~~~ll~~s~dg~I~IwDl~t--~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~I  747 (835)
                        ..|+.++.+++++|+     .+.+++|+.-| +.++.-+=  .+....+....++|.+++|.  |++|+-++|--|+|
T Consensus       107 ~~~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~Gv~v  183 (846)
T KOG2066|consen  107 TQYDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDGVKV  183 (846)
T ss_pred             eeEecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCCcEE
Confidence              456678999999998     47788888888 77765431  11112344567899999996  78999999878999


Q ss_pred             EEcCCCCCcceEEEeecCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          748 WSIGSGSKGECIHELSCTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       748 wDl~t~~~~~~i~~l~~~~~------~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      ||+.+.   ..+..+.....      -...+.|.++.+  ++.|...+|+|..++
T Consensus       184 yd~~~~---~~l~~i~~p~~~~R~e~fpphl~W~~~~~--LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  184 YDTPTR---QRLTNIPPPSQSVRPELFPPHLHWQDEDR--LVIGWGDSVKICSIK  233 (846)
T ss_pred             Eecccc---ceeeccCCCCCCCCcccCCCceEecCCCe--EEEecCCeEEEEEEe
Confidence            999887   33333332222      234567776654  444555578888776

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.30  E-value=0.00077  Score=76.73  Aligned_cols=90  Identities=10%  Similarity=0.079  Sum_probs=71.1

Q ss_pred             eEEEEEcCCCCCcceEE-EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEE
Q 003271          744 LVRVWSIGSGSKGECIH-ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV  822 (835)
Q Consensus       744 ~I~IwDl~t~~~~~~i~-~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~L  822 (835)
                      .-.+|++...+. .++. +--.....+.+++++|+...++.|+.||.|.+||...+..... .+.-.++.++|+|+|.+|
T Consensus       237 d~ciYE~~r~kl-qrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~  314 (545)
T PF11768_consen  237 DSCIYECSRNKL-QRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIF  314 (545)
T ss_pred             EEEEEEeecCce-eEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEE
Confidence            346677765432 2322 2234577899999999999999999999999999987754433 455678999999999999


Q ss_pred             EEEECCCcEEEeC
Q 003271          823 ASASHDKCVKIWK  835 (835)
Q Consensus       823 aSgs~DG~V~IWd  835 (835)
                      ++|+.-|.|.+||
T Consensus       315 ~V~s~qGelQ~FD  327 (545)
T PF11768_consen  315 VVGSEQGELQCFD  327 (545)
T ss_pred             EEEcCCceEEEEE
Confidence            9999999999998

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.30  E-value=1.8e-05  Score=91.69  Aligned_cols=181  Identities=15%  Similarity=0.177  Sum_probs=128.0

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      .+.++|++++  +++|+.|+.+|.|++++....-  .+...|...      ..+|.+++||+.||+|.|..+.+.+. ..
T Consensus        39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~-~~  107 (846)
T KOG2066|consen   39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDE-IT  107 (846)
T ss_pred             hhHHHHHHhh--cceeeeccccceEEEEecCCcc--ccccccccc------ccCCceEEEecCCCcEEEeeccCCcc-ce
Confidence            4568888886  6699999999999999876432  333345443      56799999999999999999888764 23


Q ss_pred             EeecCCCCeEEEEEcCC----CCcEEEEEeCCCcEEEEECCC---Ce--eeeEeecCceEEEEecCCCEEEEEEcCCcEE
Q 003271          635 TFTGHSTTVMSLDFHPS----KEDLLCSCDNNSEIRYWSINN---GS--CAGVFKSGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~----g~~ll~sgs~Dg~I~iwDl~s---~~--~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      .+ ....++.+|+++|+    ....+++|+..| +.++.-+-   ..  ......+.+.++.|..   .+++-..|-.|+
T Consensus       108 ~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~g---~lIAWand~Gv~  182 (846)
T KOG2066|consen  108 QY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWRG---NLIAWANDDGVK  182 (846)
T ss_pred             eE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEecC---cEEEEecCCCcE
Confidence            23 24578999999998    123466888777 77765421   11  2233456788888874   377777778899


Q ss_pred             EEECCCCeEEEEEcCCCCC------eEEEEEcCCCCEEEEEeCCeEEEEEcCC
Q 003271          706 ILDVETQVCRLKLQGHKNQ------VHSVCWNTSGEYLASVSDELVRVWSIGS  752 (835)
Q Consensus       706 IwDl~t~~~i~~l~~h~~~------I~sl~fspdg~~LasgsDg~I~IwDl~t  752 (835)
                      |||+.+...+..+......      ...++|.++.+ |+.|-..+|+|..++.
T Consensus       183 vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~~  234 (846)
T KOG2066|consen  183 VYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIKK  234 (846)
T ss_pred             EEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEec
Confidence            9999998888776643332      23578876655 5556666788888873

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.29  E-value=0.00055  Score=80.03  Aligned_cols=224  Identities=14%  Similarity=0.113  Sum_probs=132.6

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC-----eE-EEEECCCCCEEEEEE---------CCCeEEEEecCCCCce
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----IT-DVRFSPSLSRLATSS---------ADRTVRVWDTENPDYS  632 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~-----V~-sv~fspdg~~Latgs---------~Dg~I~IWDl~t~~~~  632 (835)
                      ..++.++.++.|+.+|.++++.+..+......     |. ...+.  +..++.++         .++.|..+|..+++..
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~  188 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLL  188 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCcee
Confidence            57778888999999999999999777543321     11 11222  24455553         3688999999988754


Q ss_pred             eEEeecCCC-------------------Ce-EEEEEcCCCCcEEEEEeCCC------------------cEEEEECCCCe
Q 003271          633 LRTFTGHST-------------------TV-MSLDFHPSKEDLLCSCDNNS------------------EIRYWSINNGS  674 (835)
Q Consensus       633 ~~~~~~h~~-------------------~V-~sl~fsp~g~~ll~sgs~Dg------------------~I~iwDl~s~~  674 (835)
                      .+.......                   .| ....+.+.+. +++.++.++                  .|.-+|.++++
T Consensus       189 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g-~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~  267 (488)
T cd00216         189 WRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTN-LVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGK  267 (488)
T ss_pred             eEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCC-EEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCC
Confidence            333221110                   01 1233444444 444554444                  79999999999


Q ss_pred             eeeEeecCce---------EEEEe----cCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 003271          675 CAGVFKSGAT---------QMRFQ----PRLG---RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA  738 (835)
Q Consensus       675 ~~~~~~~~i~---------~l~fs----p~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~La  738 (835)
                      .+..+.....         ...+.    -++.   .+++++.+|.++.+|.++++.+......   ...+..+| +..++
T Consensus       268 ~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~---~~~~~~~~-~~vyv  343 (488)
T cd00216         268 VKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV---EQPMAYDP-GLVYL  343 (488)
T ss_pred             EEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee---ccccccCC-ceEEE
Confidence            8877652210         01111    1232   5777888999999999999988765421   11122333 22222


Q ss_pred             E-----------------E-eCCeEEEEEcCCCCCcceEEEeecCC--------CceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271          739 S-----------------V-SDELVRVWSIGSGSKGECIHELSCTG--------NKFHSCVFHPTFPSLLVIGCYETLEL  792 (835)
Q Consensus       739 s-----------------g-sDg~I~IwDl~t~~~~~~i~~l~~~~--------~~V~sv~fspdg~~L~sgs~dg~I~I  792 (835)
                      .                 . .+|.|..+|+.++   +.+-......        .........-.+..|++++.+|.|+.
T Consensus       344 ~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG---~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~a  420 (488)
T cd00216         344 GAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTG---KVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRA  420 (488)
T ss_pred             ccccccccCcccccCCCCCCCceEEEEEeCCCC---cEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEE
Confidence            1                 1 1567888888887   3333332220        11111111224567999999999999


Q ss_pred             EEcCCCcEE
Q 003271          793 WNMTENKTL  801 (835)
Q Consensus       793 wDl~~~~~~  801 (835)
                      +|.++++.+
T Consensus       421 ld~~tG~~l  429 (488)
T cd00216         421 FDATTGKEL  429 (488)
T ss_pred             EECCCCcee
Confidence            999999988

The alignment model contains an 8-bladed beta-propeller.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.28  E-value=0.00053  Score=70.36  Aligned_cols=142  Identities=10%  Similarity=-0.021  Sum_probs=97.0

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl  646 (835)
                      ..+++.|+..+.+.-.|..+|+.+..-. -...|.+-+.- -|++++.|++.|.+++.+..++...........-.+. .
T Consensus        23 kT~v~igSHs~~~~avd~~sG~~~We~i-lg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~-a   99 (354)
T KOG4649|consen   23 KTLVVIGSHSGIVIAVDPQSGNLIWEAI-LGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVR-A   99 (354)
T ss_pred             ceEEEEecCCceEEEecCCCCcEEeehh-hCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccc-e
Confidence            4578889999999999999998875532 22333332222 4678999999999999999998753333222222222 2


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCC
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQ  712 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~  712 (835)
                      ...+++. +++.++.|++.+..|.++..++...+.+   ...-++.+....|+++...|.|.-...++.
T Consensus       100 ~~d~~~g-lIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~g~~sly~a~t~G~vlavt~~~~  167 (354)
T KOG4649|consen  100 QCDFDGG-LIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAPGDGSLYAAITAGAVLAVTKNPY  167 (354)
T ss_pred             EEcCCCc-eEEEecCCCcEEEecccccceEEecccCCceeccceecCCCceEEEEeccceEEEEccCCC
Confidence            2345544 8889999999999999999999887744   223446665566777777776665555543

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.27  E-value=3.6e-06  Score=61.78  Aligned_cols=38  Identities=29%  Similarity=0.543  Sum_probs=36.0

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd  583 (835)
                      +.+..+.+|.+.|++|+|+|++.+|++|+.|+.|+|||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            46788999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.26  E-value=0.00024  Score=76.06  Aligned_cols=191  Identities=12%  Similarity=0.108  Sum_probs=135.8

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCC-cEEEEECCCCeeeeEeecC-----ceEEEEecCCCEEEEEEcC-----CcEEEEECC
Q 003271          642 TVMSLDFHPSKEDLLCSCDNNS-EIRYWSINNGSCAGVFKSG-----ATQMRFQPRLGRILAAAIE-----NYISILDVE  710 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs~Dg-~I~iwDl~s~~~~~~~~~~-----i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~  710 (835)
                      ....++.+|.....++.+-.-| ...+||..+++....+..+     .-.-+|+++|.+|++.-.|     |.|-|||..
T Consensus         6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~   85 (305)
T PF07433_consen    6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAA   85 (305)
T ss_pred             cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECc
Confidence            4557888997777787777666 4678999999988776543     4467899999999987653     789999999


Q ss_pred             -CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCC-------------------eEEEEEcCCCCCcceEEE--e--ecCC
Q 003271          711 -TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-------------------LVRVWSIGSGSKGECIHE--L--SCTG  766 (835)
Q Consensus       711 -t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg-------------------~I~IwDl~t~~~~~~i~~--l--~~~~  766 (835)
                       +...+..+..|.-.-..+.+.|||+.|+++..|                   .+.+.|..++   +.+..  +  ..|.
T Consensus        86 ~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG---~ll~q~~Lp~~~~~  162 (305)
T PF07433_consen   86 RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSG---ALLEQVELPPDLHQ  162 (305)
T ss_pred             CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCC---ceeeeeecCccccc
Confidence             668888888888888899999999877766422                   2344455555   33333  3  3366


Q ss_pred             CceEEEEEeCCCCEEEEEEcCC-------eEEEEEcCCCc-EEE-----eccCCCCeeEEEEeCCCCEEEEE-ECCCcEE
Q 003271          767 NKFHSCVFHPTFPSLLVIGCYE-------TLELWNMTENK-TLT-----LSAHDKLVSSLAASTVNGMVASA-SHDKCVK  832 (835)
Q Consensus       767 ~~V~sv~fspdg~~L~sgs~dg-------~I~IwDl~~~~-~~~-----l~~h~~~V~~la~spdg~~LaSg-s~DG~V~  832 (835)
                      ..|.-+++.++|..++..-..+       -|.+++....- .+.     ...-...|-+|+++.++.++++. -.-+.+.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~  242 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA  242 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence            7899999999998665554433       34555443321 111     22345789999999999877544 4677899


Q ss_pred             EeC
Q 003271          833 IWK  835 (835)
Q Consensus       833 IWd  835 (835)
                      +||
T Consensus       243 ~~d  245 (305)
T PF07433_consen  243 VWD  245 (305)
T ss_pred             EEE
Confidence            995

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.22  E-value=3.9e-06  Score=61.63  Aligned_cols=39  Identities=36%  Similarity=0.548  Sum_probs=37.0

Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ++++.++.+|...|++|+|+|++.+|++++.|+.|+|||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467889999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.20  E-value=0.00018  Score=82.73  Aligned_cols=272  Identities=11%  Similarity=0.105  Sum_probs=151.0

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~-l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~  632 (835)
                      |...|.--+++..+++|+.|+.-|.|++|+-..++.... ..+..+.+..+..+++..++|.|+..|.|.|+-+......
T Consensus        32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~  111 (726)
T KOG3621|consen   32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR  111 (726)
T ss_pred             CcceEEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCC
Confidence            344455566777889999999999999999877654432 2234455666778888888999999999999987753321


Q ss_pred             e-----EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-----eeeEeecCceEEEEecCCCEEEEEEcCC
Q 003271          633 L-----RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-----CAGVFKSGATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       633 ~-----~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-----~~~~~~~~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      .     ..-..|...|++++|++++.. +++|+..|.|.+-.+....     ....+......+.++.-..++++++.-.
T Consensus       112 ~~~~~t~~d~~~~~rVTal~Ws~~~~k-~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r  190 (726)
T KOG3621|consen  112 DLDYVTPCDKSHKCRVTALEWSKNGMK-LYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR  190 (726)
T ss_pred             cceeeccccccCCceEEEEEecccccE-EeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccceehHhhhhh
Confidence            1     112337789999999999874 5599999999998887621     1111122222333343445555544433


Q ss_pred             cEEEEECCCCeEEEEEcC-CCC-CeEEEEEcCC----CCEEEEEeCCeEEEEEcCCCCCcceEEEe--------------
Q 003271          703 YISILDVETQVCRLKLQG-HKN-QVHSVCWNTS----GEYLASVSDELVRVWSIGSGSKGECIHEL--------------  762 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~-h~~-~I~sl~fspd----g~~LasgsDg~I~IwDl~t~~~~~~i~~l--------------  762 (835)
                      . .+++.+.++....-+. -++ .-...||.|.    ..-.+.|+--..|+|..+-..  ..+.+.              
T Consensus       191 ~-~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG~RlWead~~G--~V~~Thqfk~ala~~p~p~i  267 (726)
T KOG3621|consen  191 C-ILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPGLRLWEADFAG--EVIKTHQFKDALARPPAPEI  267 (726)
T ss_pred             h-heeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCCCceEEeecce--eEEEeeehhhhhccCCCCcc
Confidence            2 2334433221110000 111 1234455543    233333442235677654321  111111              


Q ss_pred             --ec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          763 --SC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       763 --~~-------------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                        ..             +.-....+.+-.++ .+++-+.-| |+|+|..+..++........|.+++.+  ++-|+.-..
T Consensus       268 ~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~-~vLa~te~G-iyv~d~~~~~v~l~se~~~DI~dVs~~--~neiFvL~~  343 (726)
T KOG3621|consen  268 PIRSLESPNQRSLPSGTQHLSLSKSSTLHSD-RVLAWTEVG-IYVFDSNNSQVYLWSEGGHDILDVSHC--GNEIFVLNL  343 (726)
T ss_pred             cCCCcCCccccCCCCCccccccceeEEeecc-eEEEeecce-EEEEEeccceEEEeecCCCceeEEeec--CceEEEEec
Confidence              00             00011112222222 344444444 999999888887666555667666644  444555556


Q ss_pred             CCcEEE
Q 003271          828 DKCVKI  833 (835)
Q Consensus       828 DG~V~I  833 (835)
                      ||.+++
T Consensus       344 d~~l~~  349 (726)
T KOG3621|consen  344 DRGLKV  349 (726)
T ss_pred             CCceeE
Confidence            665544

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.20  E-value=4.1e-05  Score=88.53  Aligned_cols=227  Identities=15%  Similarity=0.109  Sum_probs=137.8

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-ceeEEe
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTF  636 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~~~~~~  636 (835)
                      ++++||+|..-.|+.|-.-|.+.||...+.+.......|..+|..+.|+++|..++|+..-|.|.+|..+--. .....+
T Consensus        62 atSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~  141 (1416)
T KOG3617|consen   62 ATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEIQTSNI  141 (1416)
T ss_pred             hhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccccccchh
Confidence            6679999998889999899999999999888877788899999999999999999999999999999876211 000000


Q ss_pred             ecCC--CCe--EEEE----------------------------E-------------cCCCCcEEEEEeCCCcEEEEECC
Q 003271          637 TGHS--TTV--MSLD----------------------------F-------------HPSKEDLLCSCDNNSEIRYWSIN  671 (835)
Q Consensus       637 ~~h~--~~V--~sl~----------------------------f-------------sp~g~~ll~sgs~Dg~I~iwDl~  671 (835)
                      ..|.  ..+  .|..                            |             .|+| ..++.++.+|+|+..|-.
T Consensus       142 ~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ksgv~~g-~~F~~~~~~GtVyyvdq~  220 (1416)
T KOG3617|consen  142 MQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKSGVPKG-TEFLFAGKSGTVYYVDQN  220 (1416)
T ss_pred             hhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhccccccCCCCC-cEEEEEcCCceEEEEcCC
Confidence            0000  000  0111                            1             1233 355567778888877754


Q ss_pred             CCeeeeEeecCc-eEEEEecCCCEEEEEEcCCcEEEEECC-CC--------------------------------eEEEE
Q 003271          672 NGSCAGVFKSGA-TQMRFQPRLGRILAAAIENYISILDVE-TQ--------------------------------VCRLK  717 (835)
Q Consensus       672 s~~~~~~~~~~i-~~l~fsp~~~~ll~~s~dg~I~IwDl~-t~--------------------------------~~i~~  717 (835)
                       +++....+.+. ..+-|.+....+++...+-.+.+|-+. +|                                .....
T Consensus       221 -g~~~~V~k~dS~vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg  299 (1416)
T KOG3617|consen  221 -GRQRTVHKLDSEVQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYG  299 (1416)
T ss_pred             -CcEEEEEEccchHHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchh
Confidence             44444444221 122233333333333333222222111 10                                00011


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC----CCcceEEE---eecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG----SKGECIHE---LSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       718 l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~----~~~~~i~~---l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      +. ....+.|+|++..+..|+.|. .|.+.+|--...    .+..-...   .....+.|..|.|.|-.+.+++-+..
T Consensus       300 ~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~avn~~~  376 (1416)
T KOG3617|consen  300 LE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAAVNTEE  376 (1416)
T ss_pred             hh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhhhhhhh
Confidence            11 345789999999998998888 889999953322    11122222   23345779999999876655554443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.15  E-value=0.0004  Score=81.38  Aligned_cols=190  Identities=15%  Similarity=0.162  Sum_probs=132.1

Q ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC-eEEEEECCCCCEEEEEECCC-----eEEEEecCCCC-----
Q 003271          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSSADR-----TVRVWDTENPD-----  630 (835)
Q Consensus       562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~-V~sv~fspdg~~Latgs~Dg-----~I~IWDl~t~~-----  630 (835)
                      +|++.+..+|.|+.+|.|.+++- ..+.+..+..+... |..+....+..+|++.+.|+     .|+|||++.-+     
T Consensus        30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP  108 (933)
T KOG2114|consen   30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP  108 (933)
T ss_pred             EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc
Confidence            45677889999999999988873 45566777777776 44444443446888877765     59999987431     


Q ss_pred             cee---EEee----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC----Ce-e--eeEeecCceEEEEecCCCEEE
Q 003271          631 YSL---RTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GS-C--AGVFKSGATQMRFQPRLGRIL  696 (835)
Q Consensus       631 ~~~---~~~~----~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s----~~-~--~~~~~~~i~~l~fsp~~~~ll  696 (835)
                      .++   +.+.    ....++.+++++.+ -..+|.|-.+|.|.++.-+-    +. .  ....+.+++.+++..++..++
T Consensus       109 ~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~l  187 (933)
T KOG2114|consen  109 QCLYEHRIFTIKNPTNPSPASSLAVSED-LKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVL  187 (933)
T ss_pred             ceeeeeeeeccCCCCCCCcceEEEEEcc-ccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeE
Confidence            122   2222    13467888998887 44777888899999885321    11 1  112236699999999988856


Q ss_pred             EEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271          697 AAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG  753 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~  753 (835)
                      .+.....|.+|.+....+ ...+..|...+.|..+++...-++++++..|.+||....
T Consensus       188 Fv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~~e~l~fY~sd~~  245 (933)
T KOG2114|consen  188 FVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAGSEFLYFYDSDGR  245 (933)
T ss_pred             EEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEecCceEEEEcCCCc
Confidence            666667889998885443 344677888999999987666577777788999998754

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.14  E-value=0.00039  Score=84.25  Aligned_cols=227  Identities=14%  Similarity=0.192  Sum_probs=134.2

Q ss_pred             CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 003271          596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (835)
Q Consensus       596 h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~  675 (835)
                      ..+.|.++.|..+..-++.+..+|.|.+-|..+..  +.....-...|.+++|+||.. +++..+.+.++.+- ..+...
T Consensus        67 gd~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~--~eivg~vd~GI~aaswS~Dee-~l~liT~~~tll~m-T~~f~~  142 (1265)
T KOG1920|consen   67 GDDEIVSVQFLADTNSICVITALGDIILVDPETLE--LEIVGNVDNGISAASWSPDEE-LLALITGRQTLLFM-TKDFEP  142 (1265)
T ss_pred             CCcceEEEEEecccceEEEEecCCcEEEEcccccc--eeeeeeccCceEEEeecCCCc-EEEEEeCCcEEEEE-eccccc
Confidence            34689999999999999999999999999888755  344444567899999999977 44455545555543 222222


Q ss_pred             eeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe-----EEE-----EEcCCCCCeEEEEEcCCCCEEEEEe----
Q 003271          676 AGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRL-----KLQGHKNQVHSVCWNTSGEYLASVS----  741 (835)
Q Consensus       676 ~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~-----~i~-----~l~~h~~~I~sl~fspdg~~Lasgs----  741 (835)
                      +......   ..-.+. +.++.++....=.-|.-..++     .+.     ....-.+.-++|+|--||.|+++..    
T Consensus       143 i~E~~L~---~d~~~~-sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~  218 (1265)
T KOG1920|consen  143 IAEKPLD---ADDERK-SKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESE  218 (1265)
T ss_pred             hhccccc---cccccc-cccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEecc
Confidence            2111100   000011 112222222211111111110     000     0000122235689999999999843    


Q ss_pred             -C-CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc---CCeEEEEEcCCCc---EE-EeccCCCCeeE
Q 003271          742 -D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC---YETLELWNMTENK---TL-TLSAHDKLVSS  812 (835)
Q Consensus       742 -D-g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~---dg~I~IwDl~~~~---~~-~l~~h~~~V~~  812 (835)
                       + ..|+|||.. +   ..-..-....+--.+++|-|.|..+++...   ++.|.+|.-+.-+   .. ........|..
T Consensus       219 ~~~RkirV~drE-g---~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~de~~ve~  294 (1265)
T KOG1920|consen  219 TGTRKIRVYDRE-G---ALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLDEKEVEE  294 (1265)
T ss_pred             CCceeEEEeccc-c---hhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCcccccchhe
Confidence             4 699999976 3   121222222344568899999998888755   4479999855432   22 33344445999


Q ss_pred             EEEeCCCCEEEE---EECCCcEEEe
Q 003271          813 LAASTVNGMVAS---ASHDKCVKIW  834 (835)
Q Consensus       813 la~spdg~~LaS---gs~DG~V~IW  834 (835)
                      ++|+.++.+|+.   ......|++|
T Consensus       295 L~Wns~sdiLAv~~~~~e~~~v~lw  319 (1265)
T KOG1920|consen  295 LAWNSNSDILAVVTSNLENSLVQLW  319 (1265)
T ss_pred             eeecCCCCceeeeecccccceEEEE
Confidence            999999998887   4444459998

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.13  E-value=4.7e-05  Score=88.06  Aligned_cols=259  Identities=10%  Similarity=0.082  Sum_probs=147.9

Q ss_pred             EEEEEeCCCCEEEEEe----CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          559 ESCHFSPDGKLLATGG----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       559 ~sl~fSpdg~~Lasgs----~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      +-..|+|...+||+++    ..|.|.||- ++|++-.... ..-.+++++|+|..-.|+.|-.-|.+.+|...+.+. -.
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~-ht   95 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTET-HT   95 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCcee-ee
Confidence            3457899888888876    357888883 5665443321 222356799999988899998899999999887553 44


Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-------eecCc--eEEEEecCCC------EEEEEE
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-------FKSGA--TQMRFQPRLG------RILAAA  699 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-------~~~~i--~~l~fsp~~~------~ll~~s  699 (835)
                      ....|..+|..+.|+++|. .+++++.-|.|.+|.......+..       +...+  .+.+.++++.      ..++.+
T Consensus        96 v~~th~a~i~~l~wS~~G~-~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtg  174 (1416)
T KOG3617|consen   96 VVETHPAPIQGLDWSHDGT-VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTG  174 (1416)
T ss_pred             eccCCCCCceeEEecCCCC-eEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccC
Confidence            5567999999999999987 667999999999998763222211       11222  3344455532      122333


Q ss_pred             cCCcEE-EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          700 IENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       700 ~dg~I~-IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                      .+..+- .++.+......... |       .-.|+|..++.+. +|+|+-.|-..    .+.........  ..+.|.+.
T Consensus       175 De~alD~~fnwk~~~a~rs~~-k-------sgv~~g~~F~~~~~~GtVyyvdq~g----~~~~V~k~dS~--vQmLf~~~  240 (1416)
T KOG3617|consen  175 DESALDEPFNWKESLAERSDE-K-------SGVPKGTEFLFAGKSGTVYYVDQNG----RQRTVHKLDSE--VQMLFMGY  240 (1416)
T ss_pred             chhhhcccccCccchhhcccc-c-------cCCCCCcEEEEEcCCceEEEEcCCC----cEEEEEEccch--HHHHHhcc
Confidence            333222 22222111111111 1       1135666666666 88888777433    22222211110  11223332


Q ss_pred             CCEEEEEEcCCeEEEEEc-CCCc---------------------------EE---Ee--ccCCCCeeEEEEeCCCCEEEE
Q 003271          778 FPSLLVIGCYETLELWNM-TENK---------------------------TL---TL--SAHDKLVSSLAASTVNGMVAS  824 (835)
Q Consensus       778 g~~L~sgs~dg~I~IwDl-~~~~---------------------------~~---~l--~~h~~~V~~la~spdg~~LaS  824 (835)
                      ..-|++...+-++.+|-+ .+|.                           ++   ..  ......++|++++..+..|+.
T Consensus       241 ~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvLr~~eKyg~e~ge~~~c~cY~~~~~~l~a  320 (1416)
T KOG3617|consen  241 CEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVLRKSEKYGLELGEGILCMCYGEKEIRLWA  320 (1416)
T ss_pred             cceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccccCCcchhhhcCCceEEEEEeccceEEEe
Confidence            222222222222222211 1110                           01   00  112456999999999999999


Q ss_pred             EECCCcEEEeC
Q 003271          825 ASHDKCVKIWK  835 (835)
Q Consensus       825 gs~DG~V~IWd  835 (835)
                      |...|.|.+|.
T Consensus       321 gt~~gnv~~w~  331 (1416)
T KOG3617|consen  321 GTKEGNVTIWL  331 (1416)
T ss_pred             cccCCcEEEee
Confidence            99999999994

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.09  E-value=0.00033  Score=79.80  Aligned_cols=186  Identities=12%  Similarity=0.205  Sum_probs=120.5

Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEc-CC--cE
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAI-EN--YI  704 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D---g~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~-dg--~I  704 (835)
                      ...+......+..-+|+|++..+.+..-..   ..++++|+++++.....  .+.....+|+|+|.+++.+.. |+  .|
T Consensus       185 ~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~i  264 (425)
T COG0823         185 QQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDI  264 (425)
T ss_pred             eeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccE
Confidence            444554556677788999988766554332   35999999988765544  455777889999998887665 44  57


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~  780 (835)
                      +++|+..+.... +....+.-..-.|+|||++|+..+  .|  .|.++|......    ..+......-..-.|+|+|++
T Consensus       265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~----~riT~~~~~~~~p~~SpdG~~  339 (425)
T COG0823         265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV----TRLTFSGGGNSNPVWSPDGDK  339 (425)
T ss_pred             EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce----eEeeccCCCCcCccCCCCCCE
Confidence            788888776433 443333334678999999999988  44  566777666522    233323333337789999999


Q ss_pred             EEEEEcC-C--eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEE
Q 003271          781 LLVIGCY-E--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVA  823 (835)
Q Consensus       781 L~sgs~d-g--~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~La  823 (835)
                      |+..+.. |  .|.+.|+.++.......+......-+|.++++.|.
T Consensus       340 i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~  385 (425)
T COG0823         340 IVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIM  385 (425)
T ss_pred             EEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEE
Confidence            9888854 3  47777776666343333333344445555555443

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.09  E-value=0.0021  Score=69.73  Aligned_cols=236  Identities=12%  Similarity=0.142  Sum_probs=143.2

Q ss_pred             EEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccCCC-------CeEEEEECCCCCEEEEEEC--CCe
Q 003271          560 SCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLSRLATSSA--DRT  620 (835)
Q Consensus       560 sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h~~-------~V~sv~fspdg~~Latgs~--Dg~  620 (835)
                      .+.++||++.++++.          ..-.|.+||..+......+.-...       ....+.++.|++++++...  --.
T Consensus        40 ~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~S  119 (342)
T PF06433_consen   40 NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATS  119 (342)
T ss_dssp             EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEE
T ss_pred             ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCe
Confidence            367899999888743          345799999999988775532221       2234677888888777643  356


Q ss_pred             EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeEee----cC----ceEEEEecC
Q 003271          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGVFK----SG----ATQMRFQPR  691 (835)
Q Consensus       621 I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-s~~~~~~~~----~~----i~~l~fsp~  691 (835)
                      |.|.|+...+. +..+.. .   -|.-..|.++.-|.+-+.||.+....+. .|+......    ..    ...-++...
T Consensus       120 VtVVDl~~~kv-v~ei~~-P---GC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~  194 (342)
T PF06433_consen  120 VTVVDLAAKKV-VGEIDT-P---GCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRD  194 (342)
T ss_dssp             EEEEETTTTEE-EEEEEG-T---SEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETT
T ss_pred             EEEEECCCCce-eeeecC-C---CEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECC
Confidence            88888887664 333331 1   1222334443445566669999998887 455542221    11    223345556


Q ss_pred             CCEEEEEEcCCcEEEEECCCCeEEE--EEcCC----------CCCeEEEEEcCCCCEEEEEe----CC-------eEEEE
Q 003271          692 LGRILAAAIENYISILDVETQVCRL--KLQGH----------KNQVHSVCWNTSGEYLASVS----DE-------LVRVW  748 (835)
Q Consensus       692 ~~~ll~~s~dg~I~IwDl~t~~~i~--~l~~h----------~~~I~sl~fspdg~~Lasgs----Dg-------~I~Iw  748 (835)
                      ++.++..+.+|.|+-.|+.......  .+.--          .+...-+++++....|++..    ++       .|-+|
T Consensus       195 ~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~  274 (342)
T PF06433_consen  195 GGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY  274 (342)
T ss_dssp             TTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred             CCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence            6788888999999999988654322  22110          11222366766554444332    21       68888


Q ss_pred             EcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEEcCCCcEEEec
Q 003271          749 SIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTLS  804 (835)
Q Consensus       749 Dl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l~  804 (835)
                      |+.+.   +.+..+.. ...+.++.++.+.. .|++.+ .++.|.+||..+++.+...
T Consensus       275 D~~t~---krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~  328 (342)
T PF06433_consen  275 DLKTH---KRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSI  328 (342)
T ss_dssp             ETTTT---EEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE
T ss_pred             ECCCC---eEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeeh
Confidence            88887   66666654 34577899988775 565555 4689999999999988443

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=98.09  E-value=0.0028  Score=74.63  Aligned_cols=184  Identities=9%  Similarity=0.025  Sum_probs=113.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCC-CCeE---E-------EEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWIT---D-------VRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~-~~V~---s-------v~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      +..|++++.++.|+-+|..+++.+..+.... ..+.   +       +++  .+..++.++.|+.|..+|..+++.+...
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W~~  146 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVWSK  146 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEeec
Confidence            4467777778899999999999887764321 1111   1       122  2346777888999999999998864332


Q ss_pred             eec-CC--CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecCc-----------------------
Q 003271          636 FTG-HS--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSGA-----------------------  683 (835)
Q Consensus       636 ~~~-h~--~~V~s-l~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~i-----------------------  683 (835)
                      -.. +.  ..+.+ -.+. + ..+++..+     .+|.|..+|.++++.+..+....                       
T Consensus       147 ~~~~~~~~~~~tssP~v~-~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~tw~  224 (527)
T TIGR03075       147 KNGDYKAGYTITAAPLVV-K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKTWP  224 (527)
T ss_pred             ccccccccccccCCcEEE-C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCCCC
Confidence            221 11  01111 1111 2 33443322     36899999999998876543110                       


Q ss_pred             ------------eEEEEecCCCEEEEEEcC-----C-----------cEEEEECCCCeEEEEEcCCCCCeE---------
Q 003271          684 ------------TQMRFQPRLGRILAAAIE-----N-----------YISILDVETQVCRLKLQGHKNQVH---------  726 (835)
Q Consensus       684 ------------~~l~fsp~~~~ll~~s~d-----g-----------~I~IwDl~t~~~i~~l~~h~~~I~---------  726 (835)
                                  ..+.+.+..+.++.+..+     +           .|.-.|+++++.+..+......+.         
T Consensus       225 ~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~  304 (527)
T TIGR03075       225 GDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMI  304 (527)
T ss_pred             CCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcE
Confidence                        123667777777776622     2           678889999999888765222221         


Q ss_pred             EEEEcCCCC---EEEEEe-CCeEEEEEcCCCC
Q 003271          727 SVCWNTSGE---YLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       727 sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~  754 (835)
                      -+.+..+|+   .++.+. +|.++++|.++++
T Consensus       305 l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~  336 (527)
T TIGR03075       305 LFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK  336 (527)
T ss_pred             EEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence            122334665   666666 9999999999884

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.09  E-value=0.00051  Score=78.54  Aligned_cols=220  Identities=12%  Similarity=0.156  Sum_probs=121.4

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE-ecCCCCc
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW-DTENPDY  631 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW-Dl~t~~~  631 (835)
                      ...-....+.++|+|+++++++ ||...||.....+....     +.-..++|...+ .+|+-...+.|.|+ +++... 
T Consensus        30 ~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~~r~k~~-----G~g~~~vw~~~n-~yAv~~~~~~I~I~kn~~~~~-  101 (443)
T PF04053_consen   30 SCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALAWRNKAF-----GSGLSFVWSSRN-RYAVLESSSTIKIYKNFKNEV-  101 (443)
T ss_dssp             E-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTTTEEEEE-----EE-SEEEE-TSS-EEEEE-TTS-EEEEETTEE-T-
T ss_pred             CCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccCCccccc-----CceeEEEEecCc-cEEEEECCCeEEEEEcCcccc-
Confidence            4444578899999999998854 78888998655554432     334567898854 57777778889996 443222 


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~  710 (835)
                       ...+.. ...+..|-.   |. +|+..+ ++.|.+||+.+++.++.+... +..+.|++++.+++..+. ..++|++..
T Consensus       102 -~k~i~~-~~~~~~If~---G~-LL~~~~-~~~i~~yDw~~~~~i~~i~v~~vk~V~Ws~~g~~val~t~-~~i~il~~~  173 (443)
T PF04053_consen  102 -VKSIKL-PFSVEKIFG---GN-LLGVKS-SDFICFYDWETGKLIRRIDVSAVKYVIWSDDGELVALVTK-DSIYILKYN  173 (443)
T ss_dssp             -T------SS-EEEEE----SS-SEEEEE-TTEEEEE-TTT--EEEEESS-E-EEEEE-TTSSEEEEE-S--SEEEEEE-
T ss_pred             -ceEEcC-CcccceEEc---Cc-EEEEEC-CCCEEEEEhhHcceeeEEecCCCcEEEEECCCCEEEEEeC-CeEEEEEec
Confidence             112221 123444432   55 443444 458999999999999999866 699999999888888765 467776554


Q ss_pred             CC-----------eEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271          711 TQ-----------VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  779 (835)
Q Consensus       711 t~-----------~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~  779 (835)
                      ..           .....+......|.+.+|..+ -+|++... .|+.  +..+    ....+..-..++.-+.+.+...
T Consensus       174 ~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-~fiYtT~~-~lkY--l~~G----e~~~i~~ld~~~yllgy~~~~~  245 (443)
T PF04053_consen  174 LEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-CFIYTTSN-HLKY--LVNG----ETGIIAHLDKPLYLLGYLPKEN  245 (443)
T ss_dssp             HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT-EEEEE-TT-EEEE--EETT----EEEEEEE-SS--EEEEEETTTT
T ss_pred             chhcccccccCchhceEEEEEecceeEEEEEEcC-EEEEEcCC-eEEE--EEcC----CcceEEEcCCceEEEEEEccCC
Confidence            33           012222222568899999877 44443335 7776  3333    2223333356777788888777


Q ss_pred             EEEEEEcCCeEEEEEcC
Q 003271          780 SLLVIGCYETLELWNMT  796 (835)
Q Consensus       780 ~L~sgs~dg~I~IwDl~  796 (835)
                      .++....++.|..+.+.
T Consensus       246 ~ly~~Dr~~~v~~~~ld  262 (443)
T PF04053_consen  246 RLYLIDRDGNVISYELD  262 (443)
T ss_dssp             EEEEE-TT--EEEEE--
T ss_pred             EEEEEECCCCEEEEEEC
Confidence            88888888888888764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.07  E-value=0.00037  Score=79.38  Aligned_cols=195  Identities=15%  Similarity=0.138  Sum_probs=124.9

Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEEC---C-CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSA---D-RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---D-g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      +.....+..-...+..-+|+|++..++..+.   . ..+.++|+.++....  .......-..-.|+|+|+.++++...|
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~--i~~~~g~~~~P~fspDG~~l~f~~~rd  259 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPV--ILNFNGNNGAPAFSPDGSKLAFSSSRD  259 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccce--eeccCCccCCccCCCCCCEEEEEECCC
Confidence            4444455445566777889999887655432   2 358999999876422  111333445578999999999998888


Q ss_pred             Cc--EEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271          663 SE--IRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGE  735 (835)
Q Consensus       663 g~--I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~  735 (835)
                      |.  |+++|+..+...+..  .+....-.|+|+|.+++..+.. |  .|.++|.+...... +......-..-.|+|||+
T Consensus       260 g~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~r-iT~~~~~~~~p~~SpdG~  338 (425)
T COG0823         260 GSPDIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTR-LTFSGGGNSNPVWSPDGD  338 (425)
T ss_pred             CCccEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeE-eeccCCCCcCccCCCCCC
Confidence            75  666677766533311  1234466799999999888764 3  47777887765533 222233333778999999


Q ss_pred             EEEEEe--CCe--EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271          736 YLASVS--DEL--VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE  788 (835)
Q Consensus       736 ~Lasgs--Dg~--I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg  788 (835)
                      +|+..+  +|.  |.++|+.++..   +..+. .......-.|.++++.++..+..+
T Consensus       339 ~i~~~~~~~g~~~i~~~~~~~~~~---~~~lt-~~~~~e~ps~~~ng~~i~~~s~~~  391 (425)
T COG0823         339 KIVFESSSGGQWDIDKNDLASGGK---IRILT-STYLNESPSWAPNGRMIMFSSGQG  391 (425)
T ss_pred             EEEEEeccCCceeeEEeccCCCCc---EEEcc-ccccCCCCCcCCCCceEEEeccCC
Confidence            999888  564  77777766632   22222 233334557788888776665544

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.06  E-value=0.0012  Score=74.76  Aligned_cols=218  Identities=13%  Similarity=0.106  Sum_probs=153.0

Q ss_pred             EEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEecCCCCcee
Q 003271          558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDYSL  633 (835)
Q Consensus       558 V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t~~~~~  633 (835)
                      -.++++++++.. +++...++.|.+.|..+.+....+.--. ....++|+++++.++++..   +++|.+.|..+.+...
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            346788888874 4555556899999988877776664332 5678999999988777765   6888888888877544


Q ss_pred             EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-E----e--ecCceEEEEecCCCEEEEEEcC---Cc
Q 003271          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-V----F--KSGATQMRFQPRLGRILAAAIE---NY  703 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~-~----~--~~~i~~l~fsp~~~~ll~~s~d---g~  703 (835)
                      . ...-..+ ..+++.|++..++++-..++.|.+.|........ .    .  ......+.+.+++.++++....   +.
T Consensus       155 ~-~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~  232 (381)
T COG3391         155 T-IPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNN  232 (381)
T ss_pred             E-EecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCce
Confidence            4 3332234 8899999999888777789999999988776663 1    1  1235678899999987777665   58


Q ss_pred             EEEEECCCCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271          704 ISILDVETQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  778 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~-~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg  778 (835)
                      +.+.|..++........-.. ....+.++|+|.++.+..  .+.+.+.|..+......+.........+..+++.+..
T Consensus       233 v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  310 (381)
T COG3391         233 VLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIAISPLY  310 (381)
T ss_pred             EEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecccccccccceeccceeec
Confidence            99999998877665222222 566789999999998886  5799999988863222222222223345556655543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=98.06  E-value=0.00084  Score=75.79  Aligned_cols=258  Identities=14%  Similarity=0.095  Sum_probs=137.0

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC---CC---
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---PD---  630 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t---~~---  630 (835)
                      .|+.+.|+++..-|++|...|.|.||.....+...  ......-....|.+-      ...++.-.|-|+..   ..   
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~------~~~~~~~~l~di~~r~~~~~~~   74 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRF------SLNNSPGKLTDISDRAPPSLKE   74 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--------GGGSS-SEEE-GGG--TT-SE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccc------cccCCCcceEEehhhCCccccc
Confidence            48999999999999999999999999875433221  000011111222110      00111122333321   11   


Q ss_pred             --ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----------cCceEEEEec-----CC
Q 003271          631 --YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------SGATQMRFQP-----RL  692 (835)
Q Consensus       631 --~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----------~~i~~l~fsp-----~~  692 (835)
                        .+...+....++|++++.+.-|  +++.|..+|.+.|.|++....+..-.           ..++++.|..     |+
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG--Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~  152 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG--FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDG  152 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS--EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc--EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCc
Confidence              2233444557899999998664  88899999999999999887765421           2255666652     22


Q ss_pred             ---CEEEEEEcCCcEEEEECCC---CeE----EEEEcCCCCCeEEEE-EcCC---------------------CCEEEEE
Q 003271          693 ---GRILAAAIENYISILDVET---QVC----RLKLQGHKNQVHSVC-WNTS---------------------GEYLASV  740 (835)
Q Consensus       693 ---~~ll~~s~dg~I~IwDl~t---~~~----i~~l~~h~~~I~sl~-fspd---------------------g~~Lasg  740 (835)
                         -.+++|+..|.+.+|.+.-   +..    ......+.+.|..++ |+.+                     .-+++++
T Consensus       153 ySSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv  232 (395)
T PF08596_consen  153 YSSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV  232 (395)
T ss_dssp             SEEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE
T ss_pred             ccceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE
Confidence               3588889999999997751   211    122224666776665 3221                     1267778


Q ss_pred             eCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe-----CCCCEEEEEEcCCeEEEEEcCCCcEE-Eecc----CCCCe
Q 003271          741 SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-----PTFPSLLVIGCYETLELWNMTENKTL-TLSA----HDKLV  810 (835)
Q Consensus       741 sDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs-----pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~----h~~~V  810 (835)
                      ++..++|+...+.   +..+...........+++-     ..+..|++...+|.|++|.+..-+.+ ...-    ....+
T Consensus       233 Se~~irv~~~~~~---k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~  309 (395)
T PF08596_consen  233 SESDIRVFKPPKS---KGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRL  309 (395)
T ss_dssp             -SSEEEEE-TT------EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHH
T ss_pred             cccceEEEeCCCC---cccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccc
Confidence            8999999998876   4444444222233344452     35677888999999999999988776 2222    22345


Q ss_pred             eEEEEeCCCCEEEEEEC
Q 003271          811 SSLAASTVNGMVASASH  827 (835)
Q Consensus       811 ~~la~spdg~~LaSgs~  827 (835)
                      ...+++++|..++-.+.
T Consensus       310 ~~ssis~~Gdi~~~~gp  326 (395)
T PF08596_consen  310 SSSSISRNGDIFYWTGP  326 (395)
T ss_dssp             TT-EE-TTS-EEEE-SS
T ss_pred             cccEECCCCCEEEEeCc
Confidence            66777888887665543

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.04  E-value=0.0031  Score=66.51  Aligned_cols=198  Identities=14%  Similarity=0.203  Sum_probs=115.6

Q ss_pred             EEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          548 FQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      -+.+.+-...|..++|+|+.. ++++....+.|..++. +++.+.++.-. .+..-.|++..++.++++.-.++.+.+++
T Consensus        14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~   92 (248)
T PF06977_consen   14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFT   92 (248)
T ss_dssp             EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEE
T ss_pred             eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEE
Confidence            456677777799999999755 6666777888888886 47777776433 35678899988887777665689999999


Q ss_pred             cCCCCce--e---EEe-----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC---CeeeeE-----------eec
Q 003271          626 TENPDYS--L---RTF-----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---GSCAGV-----------FKS  681 (835)
Q Consensus       626 l~t~~~~--~---~~~-----~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s---~~~~~~-----------~~~  681 (835)
                      +......  .   ..+     ..++..+..++|++.++.++++. ...-..+|.+..   ...+..           +..
T Consensus        93 ~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~k-E~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  171 (248)
T PF06977_consen   93 IDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAK-ERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVR  171 (248)
T ss_dssp             E----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEE-ESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS
T ss_pred             EeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEe-CCCChhhEEEccccCccceeeccccccccccceec
Confidence            8443211  1   111     13456689999999988777665 344455555543   111111           113


Q ss_pred             CceEEEEecCCCEEEEEEcC-CcEEEEECCCCeEEEEEcCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003271          682 GATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVW  748 (835)
Q Consensus       682 ~i~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~---------~~I~sl~fspdg~~LasgsDg~I~Iw  748 (835)
                      ....+.++|..+.+++-+.. ..|.++| .+++.+..+.-..         ...-.|+|.++|++.+++--+..++|
T Consensus       172 d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvsEpNlfy~f  247 (248)
T PF06977_consen  172 DLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVSEPNLFYRF  247 (248)
T ss_dssp             ---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEETTTEEEEE
T ss_pred             cccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEcCCceEEEe
Confidence            47789999998888877764 6788888 5666655443221         24678999999987776666666655

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.01  E-value=0.002  Score=72.19  Aligned_cols=227  Identities=18%  Similarity=0.191  Sum_probs=132.4

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-cc-------C---------CCCeEEEEECCCCCEEEEEEC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE-------H---------TQWITDVRFSPSLSRLATSSA  617 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~-------h---------~~~V~sv~fspdg~~Latgs~  617 (835)
                      ...+....|||||+.||... ++.|.+++..++...... .+       -         -+.-..+.|+||+++|+....
T Consensus        42 ~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~  120 (353)
T PF00930_consen   42 PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF  120 (353)
T ss_dssp             ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE
T ss_pred             ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE
Confidence            56788999999999999886 689999998877544222 11       0         112356889999999988654


Q ss_pred             C-Ce-----------------------------------EEEEecCCCCcee-EEe---ecCCCCeEEEEEcCCCCcEEE
Q 003271          618 D-RT-----------------------------------VRVWDTENPDYSL-RTF---TGHSTTVMSLDFHPSKEDLLC  657 (835)
Q Consensus       618 D-g~-----------------------------------I~IWDl~t~~~~~-~~~---~~h~~~V~sl~fsp~g~~ll~  657 (835)
                      | ..                                   +.|+|+.+++... ...   ..-...+..+.|.+++..+++
T Consensus       121 d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~  200 (353)
T PF00930_consen  121 DEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWV  200 (353)
T ss_dssp             E-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEE
T ss_pred             CCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEE
Confidence            3 11                                   2334444433211 111   123345778888888773443


Q ss_pred             EE-eCC---CcEEEEECCCCeeeeEee-------cCceEEEEe-cCCCEEEEEE-cCC--cEEEEECCCCeEEEEEcCCC
Q 003271          658 SC-DNN---SEIRYWSINNGSCAGVFK-------SGATQMRFQ-PRLGRILAAA-IEN--YISILDVETQVCRLKLQGHK  722 (835)
Q Consensus       658 sg-s~D---g~I~iwDl~s~~~~~~~~-------~~i~~l~fs-p~~~~ll~~s-~dg--~I~IwDl~t~~~i~~l~~h~  722 (835)
                      .- ..+   ..+.++|..++.+...+.       .......+. +++..++..+ .+|  .|++++...+... .+....
T Consensus       201 ~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G~  279 (353)
T PF00930_consen  201 QWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSGD  279 (353)
T ss_dssp             EEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-SS
T ss_pred             EEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccCc
Confidence            33 332   256777887765543332       113355555 6666655544 455  5677777777644 555455


Q ss_pred             CCeEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271          723 NQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC  786 (835)
Q Consensus       723 ~~I~s-l~fspdg~~Lasgs--Dg----~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~  786 (835)
                      -.|.. +.|++++..|+..+  ++    .|+..++..+   ..+..+.+.......+.|+|++++++....
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~---~~~~~LT~~~~~~~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSG---GEPKCLTCEDGDHYSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTET---TEEEESSTTSSTTEEEEE-TTSSEEEEEEE
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCC---CCeEeccCCCCCceEEEECCCCCEEEEEEc
Confidence            56754 67888877666544  22    5666666612   344555554444479999999998876554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.94  E-value=0.00056  Score=78.76  Aligned_cols=149  Identities=13%  Similarity=0.103  Sum_probs=99.9

Q ss_pred             ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (835)
Q Consensus       502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V  581 (835)
                      ++..+.+++.|+.-+.+.+|....+..-                  .....+-.+.+..++++++..++|.|+..|.|.|
T Consensus        41 ~dst~~~l~~GsS~G~lyl~~R~~~~~~------------------~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v  102 (726)
T KOG3621|consen   41 VDATEEYLAMGSSAGSVYLYNRHTGEMR------------------KLKNEGATGITCVRSVSSVEYLVAAGTASGRVSV  102 (726)
T ss_pred             eecCCceEEEecccceEEEEecCchhhh------------------cccccCccceEEEEEecchhHhhhhhcCCceEEe
Confidence            4556789999999999999944433111                  1111124455777788999989999999999999


Q ss_pred             EEcCCCe-----EEEEe-ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC---ceeEEeecCCCCeEEEEEcCCC
Q 003271          582 WCTESFT-----VKSTL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSK  652 (835)
Q Consensus       582 Wd~~t~~-----~i~~l-~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~sl~fsp~g  652 (835)
                      +-+....     .+..+ +.|...|+|++|++++..|++|...|.|.+-.++...   .....+....+.|.-|++... 
T Consensus       103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~-  181 (726)
T KOG3621|consen  103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS-  181 (726)
T ss_pred             ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc-
Confidence            9776422     11222 2378899999999999999999999999998887621   112344445677888877633 


Q ss_pred             CcEEEEEeCCCcEEEEECCC
Q 003271          653 EDLLCSCDNNSEIRYWSINN  672 (835)
Q Consensus       653 ~~ll~sgs~Dg~I~iwDl~s  672 (835)
                       +++++...  ...+++++.
T Consensus       182 -~LLVStl~--r~~Lc~tE~  198 (726)
T KOG3621|consen  182 -YLLVSTLT--RCILCQTEA  198 (726)
T ss_pred             -eehHhhhh--hhheeecch
Confidence             35544432  233455543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.93  E-value=0.00066  Score=76.64  Aligned_cols=228  Identities=17%  Similarity=0.162  Sum_probs=118.4

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--cc------CCCCeEEEEECC-----CC-
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EE------HTQWITDVRFSP-----SL-  609 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l--~~------h~~~V~sv~fsp-----dg-  609 (835)
                      .|.+...+....++|++++.|.=| ++|.|..+|.+.|.|++....+..-  ..      ....|+++.|.-     |+ 
T Consensus        75 gf~P~~l~~~~~g~vtal~~S~iG-Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~y  153 (395)
T PF08596_consen   75 GFLPLTLLDAKQGPVTALKNSDIG-FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGY  153 (395)
T ss_dssp             EEEEEEEE---S-SEEEEEE-BTS-EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSS
T ss_pred             ccCchhheeccCCcEeEEecCCCc-EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcc
Confidence            477888888889999999998555 9999999999999999888877552  22      344688888862     22 


Q ss_pred             --CEEEEEECCCeEEEEecCC-CC--ceeEE---eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec
Q 003271          610 --SRLATSSADRTVRVWDTEN-PD--YSLRT---FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS  681 (835)
Q Consensus       610 --~~Latgs~Dg~I~IWDl~t-~~--~~~~~---~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~  681 (835)
                        -+|++|...|.+.+|.+.- ..  ..+..   ...+.++|..                   |..+|..+++.......
T Consensus       154 SSi~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~-------------------I~~i~~~~G~~a~At~~  214 (395)
T PF08596_consen  154 SSICLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILS-------------------IIPINADTGESALATIS  214 (395)
T ss_dssp             EEEEEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----E-------------------EEEEETTT--B-B-BHH
T ss_pred             cceEEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEE-------------------EEEEECCCCCcccCchh
Confidence              4688888999999998752 11  11100   0112222222                   22334444432211100


Q ss_pred             CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc-----CCCCEEEEEe-CCeEEEEEcCCCCC
Q 003271          682 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN-----TSGEYLASVS-DELVRVWSIGSGSK  755 (835)
Q Consensus       682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs-----pdg~~Lasgs-Dg~I~IwDl~t~~~  755 (835)
                      ....+.-...-..+++.+.+..++++...+.+..++..........+++-     ..+..|++-. +|.|++|.+..-  
T Consensus       215 ~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~L--  292 (395)
T PF08596_consen  215 AMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSL--  292 (395)
T ss_dssp             HHHGGGGT----EEEEEE-SSEEEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT---
T ss_pred             HhhccccCCCcCcEEEEEcccceEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCc--
Confidence            00000000001235666778899999999887776655332333344552     2455566555 999999999886  


Q ss_pred             cceEEEeecCC----CceEEEEEeCCCCEEEEEEcCC--eEEEEE
Q 003271          756 GECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYE--TLELWN  794 (835)
Q Consensus       756 ~~~i~~l~~~~----~~V~sv~fspdg~~L~sgs~dg--~I~IwD  794 (835)
                       +.+..+....    ..+..++++++|..++..+...  .+.+|.
T Consensus       293 -kei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gpsE~~l~sv~~  336 (395)
T PF08596_consen  293 -KEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGPSEIQLFSVWG  336 (395)
T ss_dssp             --EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SSSEEEEEEEES
T ss_pred             -hHhhcccCCCccccccccccEECCCCCEEEEeCcccEEEEEEEc
Confidence             5555544422    2345667789998666665443  344443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.91  E-value=0.023  Score=67.05  Aligned_cols=146  Identities=14%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEecc--CCC--CeEE-EEECCCCCEEEEEE------CCCeEEEEecCCCCceeEEe
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQ--WITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~--h~~--~V~s-v~fspdg~~Latgs------~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      ..|+.++.|+.|...|.++++.+.....  +..  .+++ ..+. ++ .|+++.      .+|.|..+|.++++...+..
T Consensus       121 ~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~-~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       121 GKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVV-KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEE-CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            4677788899999999999999876542  111  1211 1111 34 455543      26899999999887533322


Q ss_pred             ecCC------------------------------CCeE-EEEEcCCCCcEEEEEeC----CC-----------cEEEEEC
Q 003271          637 TGHS------------------------------TTVM-SLDFHPSKEDLLCSCDN----NS-----------EIRYWSI  670 (835)
Q Consensus       637 ~~h~------------------------------~~V~-sl~fsp~g~~ll~sgs~----Dg-----------~I~iwDl  670 (835)
                      ....                              ..+. .+.+.+..+.+++..+.    ++           .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence            1111                              1111 34566664434333222    12           6778899


Q ss_pred             CCCeeeeEeecC----------c--eEEEEecCCC---EEEEEEcCCcEEEEECCCCeEE
Q 003271          671 NNGSCAGVFKSG----------A--TQMRFQPRLG---RILAAAIENYISILDVETQVCR  715 (835)
Q Consensus       671 ~s~~~~~~~~~~----------i--~~l~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i  715 (835)
                      ++|+....+..-          .  .-+.+..+++   .++.+..+|.++++|-++++.+
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            999988766421          1  1122334555   5667888999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.89  E-value=0.0079  Score=64.54  Aligned_cols=223  Identities=14%  Similarity=0.149  Sum_probs=127.4

Q ss_pred             CCCCEEEEEeCCCeEEEEEcC-CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE--------
Q 003271          565 PDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT--------  635 (835)
Q Consensus       565 pdg~~Lasgs~Dg~I~VWd~~-t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~--------  635 (835)
                      ..++.|+.|+.+| |.+++.. ..+.....  +...|..+...++-+.|++-+ |+.++++++..-......        
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~   80 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS   80 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence            3577899999888 9999983 33333333  233499999999877776664 599999998754322110        


Q ss_pred             -----eecCCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEECCCC-----eeeeEee--cCceEEEEecCCCEEEEEEcC
Q 003271          636 -----FTGHSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNG-----SCAGVFK--SGATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       636 -----~~~h~~~V~sl~--fsp~g~~ll~sgs~Dg~I~iwDl~s~-----~~~~~~~--~~i~~l~fsp~~~~ll~~s~d  701 (835)
                           .......+..++  -...+...++.+. ...|.+|.....     +..+.+.  ..+..++|.  ++.++++. .
T Consensus        81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~  156 (275)
T PF00780_consen   81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S  156 (275)
T ss_pred             ccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence                 111223344444  1223333444333 558888877553     3444444  457778887  55666666 4


Q ss_pred             CcEEEEECCCCeEEEEEcCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCce
Q 003271          702 NYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF  769 (835)
Q Consensus       702 g~I~IwDl~t~~~i~~l~~h------------~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V  769 (835)
                      +...++|+.++.....+...            ..++..+.. +++.+|++ .|..-.+.|.... ... ...+.- ...+
T Consensus       157 ~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~g~fv~~~G~-~~r-~~~i~W-~~~p  231 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNIGVFVNKNGE-PSR-KSTIQW-SSAP  231 (275)
T ss_pred             CceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecceEEEEcCCCC-cCc-ccEEEc-CCch
Confidence            55888899876554433211            122333333 44566654 4444444454332 111 112221 2244


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEe
Q 003271          770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL  803 (835)
Q Consensus       770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l  803 (835)
                      .++++  ..++|++.+. +.|.||++.+++++..
T Consensus       232 ~~~~~--~~pyli~~~~-~~iEV~~~~~~~lvQ~  262 (275)
T PF00780_consen  232 QSVAY--SSPYLIAFSS-NSIEVRSLETGELVQT  262 (275)
T ss_pred             hEEEE--ECCEEEEECC-CEEEEEECcCCcEEEE
Confidence            55555  3456777666 5599999999988743

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.86  E-value=0.0017  Score=71.58  Aligned_cols=209  Identities=13%  Similarity=0.061  Sum_probs=116.7

Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEE---cCC---CCcEEEEEeC----------CCcEEEEECCCC-----eee--
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDF---HPS---KEDLLCSCDN----------NSEIRYWSINNG-----SCA--  676 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~f---sp~---g~~ll~sgs~----------Dg~I~iwDl~s~-----~~~--  676 (835)
                      .|++.|..+....-.........+.+++.   ..+   ...+++.|..          .|.|.++++...     +..  
T Consensus         3 ~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i   82 (321)
T PF03178_consen    3 SIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLI   82 (321)
T ss_dssp             EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEE
T ss_pred             EEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEE
Confidence            57777776655322111222334444433   322   1445555532          288999999884     222  


Q ss_pred             --eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe-EEEEE-cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003271          677 --GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQV-CRLKL-QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG  751 (835)
Q Consensus       677 --~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~-~i~~l-~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~  751 (835)
                        ..+++++.+++..  +++ ++++.++.|.+|++...+ ....- ......+.++...  +.+|++|. ...|.++.+.
T Consensus        83 ~~~~~~g~V~ai~~~--~~~-lv~~~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   83 HSTEVKGPVTAICSF--NGR-LVVAVGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEESS-EEEEEEE--TTE-EEEEETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEE
T ss_pred             EEEeecCcceEhhhh--CCE-EEEeecCEEEEEEccCcccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEE
Confidence              2234567776655  556 455556999999998776 43322 2233466666654  55888888 6667766554


Q ss_pred             CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC-------C--cEE--EeccCCCCeeEE---EEeC
Q 003271          752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-------N--KTL--TLSAHDKLVSSL---AAST  817 (835)
Q Consensus       752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~-------~--~~~--~l~~h~~~V~~l---a~sp  817 (835)
                      .....-....-......++++.|-+++..++++..+|.|.++....       +  +..  ........|+++   ++.+
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~  237 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIP  237 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS-
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeee
Confidence            4211011222233455688888886667999999999999998763       2  222  233445677777   4444


Q ss_pred             C--C------CEEEEEECCCcEEE
Q 003271          818 V--N------GMVASASHDKCVKI  833 (835)
Q Consensus       818 d--g------~~LaSgs~DG~V~I  833 (835)
                      .  +      ..++.++.+|.|.+
T Consensus       238 ~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  238 RSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             -SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             cCCCCcccccceEEEEecCCEEEE
Confidence            1  2      24888889998863

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.81  E-value=8e-06  Score=92.27  Aligned_cols=197  Identities=13%  Similarity=0.126  Sum_probs=127.7

Q ss_pred             CCCEEEEEEeCCC--CEEEEEeCCCeEEEEEcCCCeE--EEEeccCCCCeEEEEECC-CCCEEEEEE----CCCeEEEEe
Q 003271          555 TSKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSP-SLSRLATSS----ADRTVRVWD  625 (835)
Q Consensus       555 ~~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~--i~~l~~h~~~V~sv~fsp-dg~~Latgs----~Dg~I~IWD  625 (835)
                      ...+.|+++.-+.  ..+++|..+|.|.+-.+....-  .....+|....++++|++ |.++||.|-    .|..+.|||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3457788776644  4688999999999987754221  234567888999999998 556777763    256899999


Q ss_pred             cCCCC----ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEeec-CceEEEEecCCCEEEEEE
Q 003271          626 TENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKS-GATQMRFQPRLGRILAAA  699 (835)
Q Consensus       626 l~t~~----~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~~-~i~~l~fsp~~~~ll~~s  699 (835)
                      +.+.-    .......+......+++|..+ ..++.+|.....|.++|++.. .....+.. -+..+.+.|-....++..
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd-~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~  214 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRD-TKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSN  214 (783)
T ss_pred             cccccCCCccccccccccccCccccccccC-cchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceecc
Confidence            98651    111112223455678899855 557778988899999999832 22222222 355667777444455666


Q ss_pred             cCCcEEEEEC-CCCe-EEEEEcCC----CCCeEEEEEcCCCC-EEEEEe--CCeEEEEEcCC
Q 003271          700 IENYISILDV-ETQV-CRLKLQGH----KNQVHSVCWNTSGE-YLASVS--DELVRVWSIGS  752 (835)
Q Consensus       700 ~dg~I~IwDl-~t~~-~i~~l~~h----~~~I~sl~fspdg~-~Lasgs--Dg~I~IwDl~t  752 (835)
                      .||.|.+||. ++-+ ++..+...    ...+..++|+|... .+++..  .++|++||+..
T Consensus       215 ~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~  276 (783)
T KOG1008|consen  215 SDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV  276 (783)
T ss_pred             ccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence            6999999993 3322 22222211    22488999999643 344444  56999999864

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.81  E-value=0.0051  Score=64.91  Aligned_cols=197  Identities=12%  Similarity=0.173  Sum_probs=111.3

Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~  710 (835)
                      .+.+-...+..|+|+|+.+.++++....+.|..++.. ++.++.+.    +....|++..++.++++--.++.+.++++.
T Consensus        16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~   94 (248)
T PF06977_consen   16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID   94 (248)
T ss_dssp             E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred             ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence            3444556699999999988899999999999999975 77777765    336778887665444433347889999884


Q ss_pred             CC------eEEEEEc-----CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC--CCCcceEEE------eecCCCceE
Q 003271          711 TQ------VCRLKLQ-----GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS--GSKGECIHE------LSCTGNKFH  770 (835)
Q Consensus       711 t~------~~i~~l~-----~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t--~~~~~~i~~------l~~~~~~V~  770 (835)
                      ..      .....+.     .++..+-.++|++.+..|+++. ..-..||.+..  ......+..      .......+.
T Consensus        95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S  174 (248)
T PF06977_consen   95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS  174 (248)
T ss_dssp             ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred             ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence            21      1111121     2455689999999877776666 55566666654  111111111      112334578


Q ss_pred             EEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEE---Eecc--C-----CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          771 SCVFHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA--H-----DKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       771 sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~---~l~~--h-----~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .+.++|....|++-+.. ..|.++| .+|+++   .+..  |     -...-.|+|.++|++.++ +.-+..++|
T Consensus       175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            99999987666666554 5888899 556654   2322  1     124678999999975555 455555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.79  E-value=0.04  Score=61.13  Aligned_cols=267  Identities=14%  Similarity=0.184  Sum_probs=133.9

Q ss_pred             CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLW  582 (835)
Q Consensus       504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~VW  582 (835)
                      +...+|..+..|+.-.+|+..-.              ++    ++..|..+. .......++++.+.|+....+..|+..
T Consensus        46 dG~kllF~s~~dg~~nly~lDL~--------------t~----~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~v  107 (386)
T PF14583_consen   46 DGRKLLFASDFDGNRNLYLLDLA--------------TG----EITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRV  107 (386)
T ss_dssp             TS-EEEEEE-TTSS-EEEEEETT--------------T-----EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEE
T ss_pred             CCCEEEEEeccCCCcceEEEEcc--------------cC----EEEECccCCCCCccceEEecCCCeEEEEECCCeEEEE
Confidence            34578888888888887722111              11    222222222 222346677888888777667789999


Q ss_pred             EcCCCeEEEEeccCCCCeEEEEEC--CCCCEEEEEEC----------------------CCeEEEEecCCCCceeEEeec
Q 003271          583 CTESFTVKSTLEEHTQWITDVRFS--PSLSRLATSSA----------------------DRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       583 d~~t~~~i~~l~~h~~~V~sv~fs--pdg~~Latgs~----------------------Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      |+++.+....+......+-...|.  .|+..++-.-.                      ...|...|+.+++  .+.+..
T Consensus       108 dL~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~--~~~v~~  185 (386)
T PF14583_consen  108 DLDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGE--RKVVFE  185 (386)
T ss_dssp             ETTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT----EEEEEE
T ss_pred             ECCcCcEEEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCc--eeEEEe
Confidence            999988776666666666556664  45655543311                      2335555666655  445544


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeC---CC-cEEEEECCC-CeeeeEe-e----cCceEEEEecCCCEEEEEEc-----CCc
Q 003271          639 HSTTVMSLDFHPSKEDLLCSCDN---NS-EIRYWSINN-GSCAGVF-K----SGATQMRFQPRLGRILAAAI-----ENY  703 (835)
Q Consensus       639 h~~~V~sl~fsp~g~~ll~sgs~---Dg-~I~iwDl~s-~~~~~~~-~----~~i~~l~fsp~~~~ll~~s~-----dg~  703 (835)
                      ....+..+.|+|....+|+.|-+   +. .-+||-+++ +...+.+ .    ..+..--|.++|..|..-+.     +..
T Consensus       186 ~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~  265 (386)
T PF14583_consen  186 DTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFW  265 (386)
T ss_dssp             ESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EE
T ss_pred             cCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceE
Confidence            56678889999988888888743   22 124555432 2222221 1    12455569999988776543     335


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC----------------eEEEEEcCCCCCcceEEE-----
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE----------------LVRVWSIGSGSKGECIHE-----  761 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg----------------~I~IwDl~t~~~~~~i~~-----  761 (835)
                      |.-+|+.+++......  ......+-.++||++++.-+ |.                .|+++++..+... .+..     
T Consensus       266 i~~~d~~t~~~~~~~~--~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~-~l~~h~~sw  342 (386)
T PF14583_consen  266 IAGYDPDTGERRRLME--MPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFR-KLARHDTSW  342 (386)
T ss_dssp             EEEE-TTT--EEEEEE--E-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEE-EEEE-----
T ss_pred             EEeeCCCCCCceEEEe--CCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCcee-eeeeccCcc
Confidence            7778888876543322  12344555678999887644 42                4566777654211 1111     


Q ss_pred             --eecCCC-ceEEEEEeCCCCEEEEEEc-CCeEEEE
Q 003271          762 --LSCTGN-KFHSCVFHPTFPSLLVIGC-YETLELW  793 (835)
Q Consensus       762 --l~~~~~-~V~sv~fspdg~~L~sgs~-dg~I~Iw  793 (835)
                        +.++.. .=....|+||+++|+..+. .|...||
T Consensus       343 ~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY  378 (386)
T PF14583_consen  343 KVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVY  378 (386)
T ss_dssp             --BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEE
T ss_pred             eeecCCCccCCCCCccCCCCCEEEEECCCCCCccEE
Confidence              111111 1245789999998877665 4544444

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.79  E-value=0.011  Score=65.28  Aligned_cols=212  Identities=14%  Similarity=0.136  Sum_probs=124.5

Q ss_pred             CeEEEEEcCCCeEEEEeccC-CCCeEE---EEECCC----CCEEEEEEC----------CCeEEEEecCCC-----Ccee
Q 003271          577 KKAVLWCTESFTVKSTLEEH-TQWITD---VRFSPS----LSRLATSSA----------DRTVRVWDTENP-----DYSL  633 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h-~~~V~s---v~fspd----g~~Latgs~----------Dg~I~IWDl~t~-----~~~~  633 (835)
                      ..|++.|..+.+.+.++.-. ...+++   +.|..+    ..+|++|..          .|.|.++++...     +...
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            35888888888777655322 223444   334432    467777653          289999999984     2222


Q ss_pred             EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeE--eecCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGV--FKSGATQMRFQPRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~--~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~  710 (835)
                      .......++|++++-.  +..++++.  ++.|++|++...+ ....  +......+.....++++++|.....|.++...
T Consensus        82 i~~~~~~g~V~ai~~~--~~~lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~  157 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF--NGRLVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYD  157 (321)
T ss_dssp             EEEEEESS-EEEEEEE--TTEEEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEE
T ss_pred             EEEEeecCcceEhhhh--CCEEEEee--cCEEEEEEccCcccchhhheecceEEEEEEeccccEEEEEEcccCEEEEEEE
Confidence            2234457889999877  33455444  5899999998777 4433  33444555555557899999988888877443


Q ss_pred             C-CeEEEEE--cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC-----C---CcceEEEeecCCCceEEE---EEe
Q 003271          711 T-QVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG-----S---KGECIHELSCTGNKFHSC---VFH  775 (835)
Q Consensus       711 t-~~~i~~l--~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~-----~---~~~~i~~l~~~~~~V~sv---~fs  775 (835)
                      . ...+..+  ......+++++|-.+++.++++. +|.|.++.....     .   ....+..+. .+..|+++   .+.
T Consensus       158 ~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~-lg~~v~~~~~~~l~  236 (321)
T PF03178_consen  158 EENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH-LGDIVNSFRRGSLI  236 (321)
T ss_dssp             TTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE--SS-EEEEEE--SS
T ss_pred             ccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE-CCCccceEEEEEee
Confidence            2 2212222  22456688898886667777777 999999988631     1   111222232 34566666   444


Q ss_pred             C--CC------CEEEEEEcCCeEEEE
Q 003271          776 P--TF------PSLLVIGCYETLELW  793 (835)
Q Consensus       776 p--dg------~~L~sgs~dg~I~Iw  793 (835)
                      |  .+      ..++.++.+|.|.+.
T Consensus       237 ~~~~~~~~~~~~~i~~~T~~G~Ig~l  262 (321)
T PF03178_consen  237 PRSGSSESPNRPQILYGTVDGSIGVL  262 (321)
T ss_dssp             --SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred             ecCCCCcccccceEEEEecCCEEEEE
Confidence            4  22      248888899987743

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.78  E-value=8.4e-06  Score=92.10  Aligned_cols=196  Identities=18%  Similarity=0.267  Sum_probs=134.2

Q ss_pred             CCeEEEEECCCC--CEEEEEECCCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEe----CCCcEEEEEC
Q 003271          598 QWITDVRFSPSL--SRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCD----NNSEIRYWSI  670 (835)
Q Consensus       598 ~~V~sv~fspdg--~~Latgs~Dg~I~IWDl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs----~Dg~I~iwDl  670 (835)
                      ..+.|+++..+.  .++++|..+|.|.+-.+...... .....++....++++|++-...++++|-    .|..+.|||+
T Consensus        57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi  136 (783)
T KOG1008|consen   57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDI  136 (783)
T ss_pred             CCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceec
Confidence            456677665543  47888999999999988765443 4556678889999999987666776663    4668999999


Q ss_pred             CCCee--e--eEe----ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CCCEEEEEe
Q 003271          671 NNGSC--A--GVF----KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS  741 (835)
Q Consensus       671 ~s~~~--~--~~~----~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs  741 (835)
                      .++-.  .  ..+    ..+..+++|..+.+.+++|.....+.++|++......... .+..+..+..+| .+.|+++..
T Consensus       137 ~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~sv-nTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  137 NSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSV-NTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             ccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhh-hhhhcccceecCCCCCceeccc
Confidence            87621  1  112    2346688888888888889888999999998432221111 344567788888 788998888


Q ss_pred             CCeEEEEE-cCCCCCcceEEEeecC----CCceEEEEEeCCCCE-EEEEEcC-CeEEEEEcC
Q 003271          742 DELVRVWS-IGSGSKGECIHELSCT----GNKFHSCVFHPTFPS-LLVIGCY-ETLELWNMT  796 (835)
Q Consensus       742 Dg~I~IwD-l~t~~~~~~i~~l~~~----~~~V~sv~fspdg~~-L~sgs~d-g~I~IwDl~  796 (835)
                      ||.|.+|| .+.-+  ..+..+...    ...+..++|+|...- +++...| ++|++||+.
T Consensus       216 dg~iAiwD~~rnie--npl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~  275 (783)
T KOG1008|consen  216 DGDIAIWDTYRNIE--NPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDIC  275 (783)
T ss_pred             cCceeeccchhhhc--cHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEeccc
Confidence            99999999 43322  122222212    234889999997643 4444444 489999974

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.77  E-value=0.0028  Score=72.23  Aligned_cols=112  Identities=10%  Similarity=0.158  Sum_probs=80.5

Q ss_pred             CCCeEEEEEcCCCCcEEEEE----eCCCc----EEEEECCCCeee--e--E--eecCceEEEEecCCCEEEEEEcCCcEE
Q 003271          640 STTVMSLDFHPSKEDLLCSC----DNNSE----IRYWSINNGSCA--G--V--FKSGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       640 ~~~V~sl~fsp~g~~ll~sg----s~Dg~----I~iwDl~s~~~~--~--~--~~~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      .....++.|+-...+.+.+.    +.+|.    ..+|++...+..  .  .  +++.+.+.+++|+...++.|+.||.|.
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii  284 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII  284 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence            34456777776555555443    23343    345666544322  1  1  235689999999999999999999999


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271          706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  753 (835)
Q Consensus       706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~  753 (835)
                      +||...+.....  ...-..+.++|+|+|.++++|+ .|.+.+||+.-.
T Consensus       285 LyD~~~~~t~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  285 LYDTTRGVTLLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEcCCCeeeee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            999987744433  2455678899999999999999 799999998754

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.76  E-value=0.031  Score=63.88  Aligned_cols=190  Identities=12%  Similarity=0.072  Sum_probs=101.7

Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-c----eeEEeecCCCCeEEEEEcCCC
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-Y----SLRTFTGHSTTVMSLDFHPSK  652 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~----~~~~~~~h~~~V~sl~fsp~g  652 (835)
                      .|.||+.. |+.+.++.-..+.|.++.|+.+. .|++...||.+++||+.... .    .+....-....|....+..+|
T Consensus        62 ~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~G  139 (410)
T PF04841_consen   62 SIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNG  139 (410)
T ss_pred             EEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCC
Confidence            58999864 55665554444899999998864 55566799999999986322 0    011111111122222333233


Q ss_pred             CcEEEEEeCCCcEEEEECCCCe-eeeEe---ecCce----------EEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271          653 EDLLCSCDNNSEIRYWSINNGS-CAGVF---KSGAT----------QMRFQPRLGRILAAAIENYISILDVETQVCRLKL  718 (835)
Q Consensus       653 ~~ll~sgs~Dg~I~iwDl~s~~-~~~~~---~~~i~----------~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l  718 (835)
                        +++. ..++.|++.+-.... ..+.+   .....          ...++.+....+....++.+.+.+......   +
T Consensus       140 --ivvL-t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i  213 (410)
T PF04841_consen  140 --IVVL-TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSFKQ---I  213 (410)
T ss_pred             --EEEE-CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccccc---c
Confidence              2222 224444444322211 11111   10000          022344444445555555555444332211   1


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCC
Q 003271          719 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFP  779 (835)
Q Consensus       719 ~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~  779 (835)
                      . ..+++..++.||+|++||.-. +|.+.|.+..-.   +.+.++... ......+.|.-+..
T Consensus       214 ~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~---~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  214 D-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS---EKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             c-CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc---ceeEEeecCcCCCCcEEEEECCCc
Confidence            1 246899999999999999988 789888876544   444444443 34566777776643

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.74  E-value=0.011  Score=63.54  Aligned_cols=214  Identities=14%  Similarity=0.131  Sum_probs=122.1

Q ss_pred             CCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee---------
Q 003271          607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG---------  677 (835)
Q Consensus       607 pdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~---------  677 (835)
                      ..++.|+.|+.+| |.+|++..........  +...|..+...++-+.+++-+  |+.++++++.......         
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~--~~~~I~ql~vl~~~~~llvLs--d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRIL--KLSSITQLSVLPELNLLLVLS--DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEe--ecceEEEEEEecccCEEEEEc--CCccEEEEchhhccccccccccccc
Confidence            3577899999998 9999994333322322  233499999998866555554  5999999987644333         


Q ss_pred             ------Eee--cCceEEE--EecCCCEEEEEEcCCcEEEEECCCC-----eEEEEEcCCCCCeEEEEEcCCCCEEEEEeC
Q 003271          678 ------VFK--SGATQMR--FQPRLGRILAAAIENYISILDVETQ-----VCRLKLQGHKNQVHSVCWNTSGEYLASVSD  742 (835)
Q Consensus       678 ------~~~--~~i~~l~--fsp~~~~ll~~s~dg~I~IwDl~t~-----~~i~~l~~h~~~I~sl~fspdg~~LasgsD  742 (835)
                            .+.  .++...+  -...+...++......|.+|.....     .....+. -...+.+++|.  +..|+.+..
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~  156 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTS  156 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeC
Confidence                  111  1222222  2234555666666778888877653     3445554 45788899998  667887877


Q ss_pred             CeEEEEEcCCCCCcceEEEeecC----------CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCee
Q 003271          743 ELVRVWSIGSGSKGECIHELSCT----------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS  811 (835)
Q Consensus       743 g~I~IwDl~t~~~~~~i~~l~~~----------~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~  811 (835)
                      +...+.|+.++.. ..+......          ..++..+. .+++.+|++.  +..-.+.|....... ....-...+.
T Consensus       157 ~~f~~idl~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~e~Ll~~--~~~g~fv~~~G~~~r~~~i~W~~~p~  232 (275)
T PF00780_consen  157 KGFYLIDLNTGSP-SELLDPSDSSSSFKSRNSSSKPLGIFQ-LSDNEFLLCY--DNIGVFVNKNGEPSRKSTIQWSSAPQ  232 (275)
T ss_pred             CceEEEecCCCCc-eEEeCccCCcchhhhcccCCCceEEEE-eCCceEEEEe--cceEEEEcCCCCcCcccEEEcCCchh
Confidence            7799999997633 222211111          12232333 3345555542  333333344332211 1111123556


Q ss_pred             EEEEeCCCCEEEEEECCCcEEEeC
Q 003271          812 SLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       812 ~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+++.  ..+|+..+.+ .|.||+
T Consensus       233 ~~~~~--~pyli~~~~~-~iEV~~  253 (275)
T PF00780_consen  233 SVAYS--SPYLIAFSSN-SIEVRS  253 (275)
T ss_pred             EEEEE--CCEEEEECCC-EEEEEE
Confidence            66664  4577766654 488774

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.61  E-value=0.02  Score=62.50  Aligned_cols=217  Identities=11%  Similarity=0.064  Sum_probs=130.5

Q ss_pred             EEECCCCCE-EEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-
Q 003271          603 VRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-  680 (835)
Q Consensus       603 v~fspdg~~-Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-  680 (835)
                      ..|.++... +++--..+.|.-|+..++..  ..+. +...+.++.....+. .|+++  +.-+++++.+++..+..+. 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~--~~~~-~p~~~~~~~~~d~~g-~Lv~~--~~g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKK--RVFP-SPGGFSSGALIDAGG-RLIAC--EHGVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCce--EEEE-CCCCcccceeecCCC-eEEEE--ccccEEEeccCCceeEEecc
Confidence            346666553 44444567888888886653  3333 223344444444433 44455  3456777776655533221 


Q ss_pred             -------cCceEEEEecCCCEEEEEEc-----------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          681 -------SGATQMRFQPRLGRILAAAI-----------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       681 -------~~i~~l~fsp~~~~ll~~s~-----------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                             .....+.+.|+|...+....           -|.|+.+|. .+..+..+..+-..-+.|+||||++.|+.+. 
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence                   22557788888776665433           133555554 4556666665556667899999998888777 


Q ss_pred             -CCeEEEEEcCC--CCCc--ceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEE-EeccCCCCeeEEE
Q 003271          742 -DELVRVWSIGS--GSKG--ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTL-TLSAHDKLVSSLA  814 (835)
Q Consensus       742 -Dg~I~IwDl~t--~~~~--~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~-~l~~h~~~V~~la  814 (835)
                       .+.|..|++..  +...  .....+....+..-.++...+|.+.+++...| .|.+|+.. ++.+ .+.-....+++++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~  261 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPA  261 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccce
Confidence             57888888762  2111  11222333456677788888888665555554 99999998 6666 4444447788888


Q ss_pred             EeC-CCC-EEEEEEC
Q 003271          815 AST-VNG-MVASASH  827 (835)
Q Consensus       815 ~sp-dg~-~LaSgs~  827 (835)
                      |-- +.+ +++|+..
T Consensus       262 FgG~~~~~L~iTs~~  276 (307)
T COG3386         262 FGGPDLNTLYITSAR  276 (307)
T ss_pred             EeCCCcCEEEEEecC
Confidence            864 334 4444433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.60  E-value=0.033  Score=63.62  Aligned_cols=219  Identities=12%  Similarity=0.083  Sum_probs=124.9

Q ss_pred             CeEEEEECCCCCEEEEE-ECCC----eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC----------C
Q 003271          599 WITDVRFSPSLSRLATS-SADR----TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------S  663 (835)
Q Consensus       599 ~V~sv~fspdg~~Latg-s~Dg----~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D----------g  663 (835)
                      .+..++++|++++||.+ +..|    .|+|+|+.+++.....+...  ....+.|.+++..++++...+          .
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~  202 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPR  202 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCGCCE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCCCCc
Confidence            34467899999988866 3333    69999999986533333321  123499999988888776433          2


Q ss_pred             cEEEEECCCCeee--eEee--cC---ceEEEEecCCCEEEEEEcC----CcEEEEECCCC-----eEEEEEcCCCCCeEE
Q 003271          664 EIRYWSINNGSCA--GVFK--SG---ATQMRFQPRLGRILAAAIE----NYISILDVETQ-----VCRLKLQGHKNQVHS  727 (835)
Q Consensus       664 ~I~iwDl~s~~~~--~~~~--~~---i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~-----~~i~~l~~h~~~I~s  727 (835)
                      .|++|.+.+....  ..+.  ..   ...+..++++.++++....    ..+++.|+..+     ...............
T Consensus       203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~  282 (414)
T PF02897_consen  203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYY  282 (414)
T ss_dssp             EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEE
T ss_pred             EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEE
Confidence            4788888765432  3332  22   3467889999998876653    35888898874     333333323333333


Q ss_pred             EEEcCCCCEEEEEe----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcC-CCc
Q 003271          728 VCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT-ENK  799 (835)
Q Consensus       728 l~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~-~~~  799 (835)
                      +... .+.+++...    .+.|...++...........+..+...+.-..+...+.+|++...++   .|++|++. +..
T Consensus       283 v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~~~~  361 (414)
T PF02897_consen  283 VDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDDGKE  361 (414)
T ss_dssp             EEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-TEE
T ss_pred             EEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCCCcE
Confidence            4433 444444443    45788888887643223335555555444344444555666655543   89999999 554


Q ss_pred             EEEecc-CCCCeeEEEEeCCCC
Q 003271          800 TLTLSA-HDKLVSSLAASTVNG  820 (835)
Q Consensus       800 ~~~l~~-h~~~V~~la~spdg~  820 (835)
                      ...+.. -.+.|..+...+++.
T Consensus       362 ~~~~~~p~~g~v~~~~~~~~~~  383 (414)
T PF02897_consen  362 SREIPLPEAGSVSGVSGDFDSD  383 (414)
T ss_dssp             EEEEESSSSSEEEEEES-TT-S
T ss_pred             EeeecCCcceEEeccCCCCCCC
Confidence            443332 234455555455544

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.55  E-value=0.025  Score=61.76  Aligned_cols=219  Identities=12%  Similarity=0.120  Sum_probs=133.7

Q ss_pred             EEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee-
Q 003271          560 SCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-  637 (835)
Q Consensus       560 sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~-  637 (835)
                      +-.|.++.. ++.+--..+.|.-|+..+++... +. +.+.+.++.....+..|+++. . -+.+++.+++.. +..+. 
T Consensus        29 gP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~-~p~~~~~~~~~d~~g~Lv~~~-~-g~~~~~~~~~~~-~t~~~~  103 (307)
T COG3386          29 GPVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FP-SPGGFSSGALIDAGGRLIACE-H-GVRLLDPDTGGK-ITLLAE  103 (307)
T ss_pred             CccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EE-CCCCcccceeecCCCeEEEEc-c-ccEEEeccCCce-eEEecc
Confidence            345666666 44555567889999988664432 22 333445555554555566553 3 367777765443 11111 


Q ss_pred             ---c-CCCCeEEEEEcCCCCcEEEEEe-----C-----CCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEc
Q 003271          638 ---G-HSTTVMSLDFHPSKEDLLCSCD-----N-----NSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       638 ---~-h~~~V~sl~fsp~g~~ll~sgs-----~-----Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~  700 (835)
                         + .....+.+.+.|+|...+-+-+     .     -|.|+.+|. .+..++.+..   -.+.++|+|+++.++++..
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT  182 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADT  182 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeC
Confidence               1 1245667888899874443333     1     134555554 3555544444   2567999999998888877


Q ss_pred             C-CcEEEEECCC------Ce-EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCcceEEEeecCCCceE
Q 003271          701 E-NYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFH  770 (835)
Q Consensus       701 d-g~I~IwDl~t------~~-~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t~~~~~~i~~l~~~~~~V~  770 (835)
                      . +.|+-|++..      +. ....+..+.+..-.++...+|.+.+++. +| .|.+|+.. +   +.+..+......++
T Consensus       183 ~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G---~l~~~i~lP~~~~t  258 (307)
T COG3386         183 PANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-G---KLLGEIKLPVKRPT  258 (307)
T ss_pred             CCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-C---cEEEEEECCCCCCc
Confidence            5 7888887752      11 1222333456677788888999886544 44 99999987 5   67777777667788


Q ss_pred             EEEEe-CCCCEEEEEEcCC
Q 003271          771 SCVFH-PTFPSLLVIGCYE  788 (835)
Q Consensus       771 sv~fs-pdg~~L~sgs~dg  788 (835)
                      +++|- ++.+.|++.+...
T Consensus       259 ~~~FgG~~~~~L~iTs~~~  277 (307)
T COG3386         259 NPAFGGPDLNTLYITSARS  277 (307)
T ss_pred             cceEeCCCcCEEEEEecCC
Confidence            88884 4556666665543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=97.53  E-value=0.16  Score=61.33  Aligned_cols=270  Identities=13%  Similarity=0.124  Sum_probs=154.6

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEE--cCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWC--TESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd--~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~  631 (835)
                      ..|.-..|-.|..+|.++..||.+.-|-  ..++..-..-  .-...++.--.|+..++.-+.+..|.-..+|.-+. +.
T Consensus       584 RSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~-kL  662 (1096)
T KOG1897|consen  584 RSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNG-KL  662 (1096)
T ss_pred             hheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCC-cE
Confidence            3466666766788999999999987664  4454433221  22345666667776655555555666666665542 32


Q ss_pred             eeEEeecCCCCeEEEE-Ec-CCCCcEEEEEeCCCcEEEEECCCCeee--eEee--cCceEEEEecCCCEEEEEEc-----
Q 003271          632 SLRTFTGHSTTVMSLD-FH-PSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--SGATQMRFQPRLGRILAAAI-----  700 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~-fs-p~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~~--~~i~~l~fsp~~~~ll~~s~-----  700 (835)
                      +...+.-  ..+..++ |+ +.....++++. .+.+++.-+..-..+  +++.  .....+++.+..-.+.+.+.     
T Consensus       663 v~spls~--kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl~irtvpl~~~prrI~~q~~sl~~~v~s~r~e~~  739 (1096)
T KOG1897|consen  663 VYSPLSL--KEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKLHIRTVPLGESPRRICYQESSLTFGVLSNRIESS  739 (1096)
T ss_pred             EEeccch--HHhhhhcccccccCCceEEEec-CCceEEEEecchhhcceeeecCCCChhheEecccceEEEEEecccccc
Confidence            2222111  1111111 22 22233444444 566777766543222  2232  34566777764444444332     


Q ss_pred             ------C---CcEEEEECCCCeEEEEEcC-CCC---CeEEEEEcCC-CCEEEEEe-----------CCeEEEEEcCCCCC
Q 003271          701 ------E---NYISILDVETQVCRLKLQG-HKN---QVHSVCWNTS-GEYLASVS-----------DELVRVWSIGSGSK  755 (835)
Q Consensus       701 ------d---g~I~IwDl~t~~~i~~l~~-h~~---~I~sl~fspd-g~~Lasgs-----------Dg~I~IwDl~t~~~  755 (835)
                            +   ..++++|-.+.+.+...+- ...   .|.++.|..| +.++++|+           .|.|.||.+.....
T Consensus       740 ~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  740 AEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             hhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence                  1   1367777777666554331 112   3445558777 77777764           25788888877544


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          756 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       756 ~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .+.+++....+ .+.++..- +|+  +.++-...|++|++.+.+.+ .-..|...+..+...-.+..|+.|..=++|.+
T Consensus       820 L~~v~e~~v~G-av~aL~~f-ngk--llA~In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitl  894 (1096)
T KOG1897|consen  820 LELVAETVVKG-AVYALVEF-NGK--LLAGINQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITL  894 (1096)
T ss_pred             eeeeeeeeecc-ceeehhhh-CCe--EEEecCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEE
Confidence            45555544433 33333321 344  44455668999999988666 44577788888988888888998886666544

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=97.49  E-value=0.036  Score=61.90  Aligned_cols=219  Identities=11%  Similarity=0.126  Sum_probs=108.4

Q ss_pred             CCCEEEEEe-CCCeEEEEEcCC----CeEEEEecc---CC----CCeEEEEECCCCCEEEEEEC------CCeEEEEecC
Q 003271          566 DGKLLATGG-HDKKAVLWCTES----FTVKSTLEE---HT----QWITDVRFSPSLSRLATSSA------DRTVRVWDTE  627 (835)
Q Consensus       566 dg~~Lasgs-~Dg~I~VWd~~t----~~~i~~l~~---h~----~~V~sv~fspdg~~Latgs~------Dg~I~IWDl~  627 (835)
                      +.++|+..+ .++.|+|+|+.+    -++.++++.   +.    ..-..+..-|+|.+++++-.      -|-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            456777766 778999999873    455566643   11    12233445578888888632      2467788877


Q ss_pred             CCCceeEEeecC---CCCeEEEEEcCCCCcEEEEEeC--------------------CCcEEEEECCCCeeeeEeecC--
Q 003271          628 NPDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN--------------------NSEIRYWSINNGSCAGVFKSG--  682 (835)
Q Consensus       628 t~~~~~~~~~~h---~~~V~sl~fsp~g~~ll~sgs~--------------------Dg~I~iwDl~s~~~~~~~~~~--  682 (835)
                      +.+. .......   ...-+.+-|.|..+ +++|...                    ..++.+||+.+.+.+.++..+  
T Consensus       166 tf~v-~g~We~~~~~~~~gYDfw~qpr~n-vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~  243 (461)
T PF05694_consen  166 TFEV-KGRWEKDRGPQPFGYDFWYQPRHN-VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE  243 (461)
T ss_dssp             T--E-EEE--SB-TT------EEEETTTT-EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred             cccc-cceeccCCCCCCCCCCeEEcCCCC-EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence            6443 3333221   23345677778644 5555532                    348999999999999988754  


Q ss_pred             ---ceEEEEe--cCCCEEEEEE-cCCcEEEEEC-CCCe----EEEEEcCC-----------------CCCeEEEEEcCCC
Q 003271          683 ---ATQMRFQ--PRLGRILAAA-IENYISILDV-ETQV----CRLKLQGH-----------------KNQVHSVCWNTSG  734 (835)
Q Consensus       683 ---i~~l~fs--p~~~~ll~~s-~dg~I~IwDl-~t~~----~i~~l~~h-----------------~~~I~sl~fspdg  734 (835)
                         ...++|.  |+..+-++++ ....|..|-- +.++    .+..+...                 ..-|+.|..|.|.
T Consensus       244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD  323 (461)
T PF05694_consen  244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD  323 (461)
T ss_dssp             EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred             CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence               3345554  4455544444 3444544433 3332    22222210                 2457899999999


Q ss_pred             CEEEEEe--CCeEEEEEcCCCCCcceEEEeecCC----------------CceEEEEEeCCCCEEEEEEc
Q 003271          735 EYLASVS--DELVRVWSIGSGSKGECIHELSCTG----------------NKFHSCVFHPTFPSLLVIGC  786 (835)
Q Consensus       735 ~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~----------------~~V~sv~fspdg~~L~sgs~  786 (835)
                      ++|+.+.  +|.|+.||+......+.+..+...+                +....+..|.||+.|+++.+
T Consensus       324 rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTnS  393 (461)
T PF05694_consen  324 RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTNS  393 (461)
T ss_dssp             -EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE--
T ss_pred             CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEee
Confidence            9999988  9999999999876666665543211                23467888999999888764

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PRK10115 protease 2; Provisional

Probab=97.47  E-value=0.2  Score=61.15  Aligned_cols=236  Identities=10%  Similarity=0.015  Sum_probs=121.6

Q ss_pred             EEEEEEeCCCCEEEEEeC-----CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC------CeEEEEec
Q 003271          558 VESCHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDT  626 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~-----Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D------g~I~IWDl  626 (835)
                      +..+.|+|||++|+.+..     ...|++.|+.+++.+...-....  ..++|.+|++.|+.+..+      ..|+++++
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~l  206 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHTI  206 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEEC
Confidence            667889999998887643     23588889988864322211211  469999998876665442      36888888


Q ss_pred             CCCCc-eeEEeecCCCCeE-EEEEcCCCCcEEEEEe--CCCcEEEEECC--CCeeeeEee--cCceEEEEecCCCEEEEE
Q 003271          627 ENPDY-SLRTFTGHSTTVM-SLDFHPSKEDLLCSCD--NNSEIRYWSIN--NGSCAGVFK--SGATQMRFQPRLGRILAA  698 (835)
Q Consensus       627 ~t~~~-~~~~~~~h~~~V~-sl~fsp~g~~ll~sgs--~Dg~I~iwDl~--s~~~~~~~~--~~i~~l~fsp~~~~ll~~  698 (835)
                      .++.. ....+........ .+..+.+++.+++.+.  .++.+.+|+..  .+.....+.  ..+.. .+...++.+++.
T Consensus       207 gt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ly~~  285 (686)
T PRK10115        207 GTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEY-SLDHYQHRFYLR  285 (686)
T ss_pred             CCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEE-EEEeCCCEEEEE
Confidence            87721 2233433333333 3333447676665443  34678999853  333222222  22221 222223555554


Q ss_pred             EcC----CcEEEEECCCCeEEEEEcCC-C-CCeEEEEEcCCCCEEEEEe-CCe--EEEEEcCCCCCcceEEEee-cCCCc
Q 003271          699 AIE----NYISILDVETQVCRLKLQGH-K-NQVHSVCWNTSGEYLASVS-DEL--VRVWSIGSGSKGECIHELS-CTGNK  768 (835)
Q Consensus       699 s~d----g~I~IwDl~t~~~i~~l~~h-~-~~I~sl~fspdg~~Lasgs-Dg~--I~IwDl~t~~~~~~i~~l~-~~~~~  768 (835)
                      +..    ..|...++........+..+ . ..|..+.+.. +.++++.. ++.  |.+++..++    .+..+. .....
T Consensus       286 tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~----~~~~l~~~~~~~  360 (686)
T PRK10115        286 SNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTR----EVIGIAFDDPAY  360 (686)
T ss_pred             EcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCC----ceEEecCCCCce
Confidence            442    23444455421111223334 2 3677888873 33344444 664  445554322    223332 11222


Q ss_pred             eEEEEEe--CCCC-EEEEEEcC---CeEEEEEcCCCcEE
Q 003271          769 FHSCVFH--PTFP-SLLVIGCY---ETLELWNMTENKTL  801 (835)
Q Consensus       769 V~sv~fs--pdg~-~L~sgs~d---g~I~IwDl~~~~~~  801 (835)
                      +..+.++  +++. .+++.++.   +.|+.||+.+++..
T Consensus       361 ~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~~~  399 (686)
T PRK10115        361 VTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGERR  399 (686)
T ss_pred             EeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCcEE
Confidence            3333344  3444 34444332   48999998877644

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.46  E-value=0.013  Score=69.66  Aligned_cols=210  Identities=13%  Similarity=0.135  Sum_probs=115.7

Q ss_pred             CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE------CCC--eEEEEecCCCCceeEEeecCCCCeEEEE
Q 003271          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS------ADR--TVRVWDTENPDYSLRTFTGHSTTVMSLD  647 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs------~Dg--~I~IWDl~t~~~~~~~~~~h~~~V~sl~  647 (835)
                      +|.+.-.+-.....+.-..+....+.+.+++|+|..++...      .|.  .|.+++..  ........+  .....-.
T Consensus       328 ~G~l~~~~~~~~~pv~g~~g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g--g~~~~lt~g--~~~t~Ps  403 (591)
T PRK13616        328 DGSLVSVDGQGVTPVPGAFGQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG--GVAVQVLEG--HSLTRPS  403 (591)
T ss_pred             CCeEEEecCCCeeeCCCccccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC--CcceeeecC--CCCCCce
Confidence            56555544322222222223334678999999999887665      244  45555543  222222332  2378889


Q ss_pred             EcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEE---EECCCCe
Q 003271          648 FHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISI---LDVETQV  713 (835)
Q Consensus       648 fsp~g~~ll~sgs-----------~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~I---wDl~t~~  713 (835)
                      |+|+|+.+.+...           ..+.+.+.++..++....+...+..+.|+|+|..++... ++.|++   .....+.
T Consensus       404 WspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~  482 (591)
T PRK13616        404 WSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQ  482 (591)
T ss_pred             ECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCc
Confidence            9999775554432           224555556665554445566799999999999988876 577777   4444454


Q ss_pred             EEE----EEc-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271          714 CRL----KLQ-GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE  788 (835)
Q Consensus       714 ~i~----~l~-~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg  788 (835)
                      ...    .+. +-...+.++.|..++.+++...++...+|.+.-.........-......+..++-+++  .|+++..++
T Consensus       483 ~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g  560 (591)
T PRK13616        483 YALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARA  560 (591)
T ss_pred             eeecccEEeecccCCccccceEecCCEEEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCc
Confidence            111    122 2233468899999999765544443334443322111111011112445666666653  466666666


Q ss_pred             eEEE
Q 003271          789 TLEL  792 (835)
Q Consensus       789 ~I~I  792 (835)
                      .+.+
T Consensus       561 ~~~l  564 (591)
T PRK13616        561 VLQL  564 (591)
T ss_pred             eEEe
Confidence            4443

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.45  E-value=0.018  Score=69.59  Aligned_cols=140  Identities=9%  Similarity=0.081  Sum_probs=95.6

Q ss_pred             CCEEEEE-ECCCeEEEEecCCCCceeEEeecCCCC-eEEEEEcC-----CCCcEEEEEeCCCcEEEEECCCCe--eee--
Q 003271          609 LSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTT-VMSLDFHP-----SKEDLLCSCDNNSEIRYWSINNGS--CAG--  677 (835)
Q Consensus       609 g~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~h~~~-V~sl~fsp-----~g~~ll~sgs~Dg~I~iwDl~s~~--~~~--  677 (835)
                      .++|+.. .....|+-.|++.++. +..+..|... |..++-..     +.... +.|-.+..|..||.+-..  ++.  
T Consensus       493 ~~mil~~~~~~~~ly~mDLe~GKV-V~eW~~~~~~~v~~~~p~~K~aqlt~e~t-flGls~n~lfriDpR~~~~k~v~~~  570 (794)
T PF08553_consen  493 RNMILLDPNNPNKLYKMDLERGKV-VEEWKVHDDIPVVDIAPDSKFAQLTNEQT-FLGLSDNSLFRIDPRLSGNKLVDSQ  570 (794)
T ss_pred             cceEeecCCCCCceEEEecCCCcE-EEEeecCCCcceeEecccccccccCCCce-EEEECCCceEEeccCCCCCceeecc
Confidence            3444443 3457889999999885 6666666543 55554321     12223 356678899999998632  321  


Q ss_pred             --Eee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003271          678 --VFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG  751 (835)
Q Consensus       678 --~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~  751 (835)
                        .+.  ....|++-+. .++|++|+.+|.|++||--..+....+.+-..+|.+|+.+.||++|++.++..|.+++..
T Consensus       571 ~k~Y~~~~~Fs~~aTt~-~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~tyLlLi~t~  647 (794)
T PF08553_consen  571 SKQYSSKNNFSCFATTE-DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKTYLLLIDTL  647 (794)
T ss_pred             ccccccCCCceEEEecC-CceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecceEEEEEEe
Confidence              111  2245555444 588999999999999995444444456677899999999999999999999999998863

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.42  E-value=0.04  Score=62.90  Aligned_cols=188  Identities=9%  Similarity=0.068  Sum_probs=97.3

Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEE----Eec
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMR----FQP  690 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~----fsp  690 (835)
                      .|+||+.....  +..+.-..+.|.++.|..+. .++ .-..||.+++||+.... ...+.     ..+....    +..
T Consensus        62 ~I~iys~sG~l--l~~i~w~~~~iv~~~wt~~e-~Lv-vV~~dG~v~vy~~~G~~-~fsl~~~i~~~~v~e~~i~~~~~~  136 (410)
T PF04841_consen   62 SIQIYSSSGKL--LSSIPWDSGRIVGMGWTDDE-ELV-VVQSDGTVRVYDLFGEF-QFSLGEEIEEEKVLECRIFAIWFY  136 (410)
T ss_pred             EEEEECCCCCE--eEEEEECCCCEEEEEECCCC-eEE-EEEcCCEEEEEeCCCce-eechhhhccccCcccccccccccC
Confidence            36677665432  22222222789999998864 344 44569999999997333 11111     1111110    112


Q ss_pred             CCCEEEEEEcCCcEEEEECCCCe-EEEEEc---CCCC------CeE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce
Q 003271          691 RLGRILAAAIENYISILDVETQV-CRLKLQ---GHKN------QVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC  758 (835)
Q Consensus       691 ~~~~ll~~s~dg~I~IwDl~t~~-~i~~l~---~h~~------~I~-sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~  758 (835)
                      ..+ +++.+.++.+++..--... ....+.   ....      .+. ...++.+....+... ++.+.+.+-...     
T Consensus       137 ~~G-ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~~-----  210 (410)
T PF04841_consen  137 KNG-IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENSF-----  210 (410)
T ss_pred             CCC-EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEcccc-----
Confidence            123 4444455555554332221 111111   0000      000 022334444444433 445554443221     


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec--cCCCCeeEEEEeCCCC
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--AHDKLVSSLAASTVNG  820 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~--~h~~~V~~la~spdg~  820 (835)
                       ..+. ..+++..+++||++++|+.-..+|.+.|.+.+-.+.+...  .-......|.|.-++.
T Consensus       211 -~~i~-~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da  272 (410)
T PF04841_consen  211 -KQID-SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA  272 (410)
T ss_pred             -cccc-CCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence             0111 2468999999999999999999999999987666555222  2235667777776544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.38  E-value=0.00072  Score=77.03  Aligned_cols=95  Identities=16%  Similarity=0.167  Sum_probs=79.4

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeE-EEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWIT-DVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~-sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      .-.|.-+.|+|.-.++|++..+|.|.++.+. ...+.++.-|...++ +++|.|||+.|++|-.||+|++.|++++....
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            3458889999999999999999999999988 788888887888887 99999999999999999999999999887533


Q ss_pred             EEeecCCCCeEEEEEcC
Q 003271          634 RTFTGHSTTVMSLDFHP  650 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp  650 (835)
                      .....-...|.++.|.+
T Consensus        99 ~~~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   99 SFLFSVETDISKGIWDR  115 (665)
T ss_pred             ccccccccchheeeccc
Confidence            33333445677777763

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.30  E-value=0.025  Score=59.22  Aligned_cols=228  Identities=12%  Similarity=0.102  Sum_probs=136.1

Q ss_pred             EEEEeCCCC-EEEEEeCCCe-EEEEEcCCCeEEEEeccCCC--CeEEEEECCCCCEEEEEECC-----CeEEEEecCCCC
Q 003271          560 SCHFSPDGK-LLATGGHDKK-AVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD  630 (835)
Q Consensus       560 sl~fSpdg~-~Lasgs~Dg~-I~VWd~~t~~~i~~l~~h~~--~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~  630 (835)
                      .|+|+|.-. -++.+-.-|+ ..++|........++...++  .--.=.|++||.+|+..-.|     |.|-|||.+.+-
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f  151 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF  151 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence            477777543 3555555444 57888887766555432221  11123599999999887544     789999999765


Q ss_pred             ceeEEeecCCCCeEEEEEcCCCCcEEEEEe------CCC-----------cEEEEECCCCeeeeEee-------cCceEE
Q 003271          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD------NNS-----------EIRYWSINNGSCAGVFK-------SGATQM  686 (835)
Q Consensus       631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs------~Dg-----------~I~iwDl~s~~~~~~~~-------~~i~~l  686 (835)
                      ..+-.+..|.-....+.|.+||+.+++..+      .-|           .+.+.|..++..+....       ..+..+
T Consensus       152 qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHl  231 (366)
T COG3490         152 QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHL  231 (366)
T ss_pred             ceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeee
Confidence            556778888888889999999987766543      111           33444544555443332       236677


Q ss_pred             EEecCCCEEEEEEcCCc-----EEEEECCCCeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 003271          687 RFQPRLGRILAAAIENY-----ISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS  752 (835)
Q Consensus       687 ~fsp~~~~ll~~s~dg~-----I~IwDl~t~~~i~~l~-------~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t  752 (835)
                      +..+++..++.+-..|.     ..+=-...++.+.-+.       .....|-+|+.+.+..+++..+  .+...+||..+
T Consensus       232 d~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~t  311 (366)
T COG3490         232 DIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAAT  311 (366)
T ss_pred             eeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCC
Confidence            77777665554443331     1111112223322222       1234677888887777777777  55889999999


Q ss_pred             CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          753 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       753 ~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      +   ..+....    -.-++-.-+...-+++.+.+|.|.++.
T Consensus       312 G---~vv~~a~----l~daaGva~~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         312 G---AVVSEAA----LPDAAGVAAAKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             C---cEEeccc----ccccccceeccCceEEecCCceEEecc
Confidence            8   3333211    111222333444478888888888874

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.19  E-value=0.045  Score=65.19  Aligned_cols=185  Identities=11%  Similarity=0.076  Sum_probs=108.3

Q ss_pred             CCeEEEEEcCCCCcEEEEEe-----CC--CcEEEEECCCCeeeeEee-cCceEEEEecCCCEEEEEEcC-----------
Q 003271          641 TTVMSLDFHPSKEDLLCSCD-----NN--SEIRYWSINNGSCAGVFK-SGATQMRFQPRLGRILAAAIE-----------  701 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sgs-----~D--g~I~iwDl~s~~~~~~~~-~~i~~l~fsp~~~~ll~~s~d-----------  701 (835)
                      ..+.+.+++|+|+.++++..     .|  ..|++++..... ..... .....-.|+|+++.+.+....           
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~-~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~  428 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA-VQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPA  428 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc-eeeecCCCCCCceECCCCCceEEEecCcceEEEeccCC
Confidence            46788999999998877762     23  356666653222 22222 236778899998877776532           


Q ss_pred             -CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcc-eE---EEeec-CCCceEEEEEe
Q 003271          702 -NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE-CI---HELSC-TGNKFHSCVFH  775 (835)
Q Consensus       702 -g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~-~i---~~l~~-~~~~V~sv~fs  775 (835)
                       +.+++.+++.++...   .....|..+.|+|||..|+...++.|+|--+....... .+   ..+.. ....+.++.|.
T Consensus       429 ~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~  505 (591)
T PRK13616        429 TGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWR  505 (591)
T ss_pred             CceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecccCCccccceEe
Confidence             234444444433322   23567999999999999998888888773332211111 11   12222 23346889999


Q ss_pred             CCCCEEEEEEcCC--eEEEEEcCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          776 PTFPSLLVIGCYE--TLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       776 pdg~~L~sgs~dg--~I~IwDl~~~~~~~l~~--h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      .++.. +++..++  .|+..++.......+..  ....+..|+-++.  .|+....+|.+.
T Consensus       506 ~~~~L-~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~  563 (591)
T PRK13616        506 TGDSL-VVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ  563 (591)
T ss_pred             cCCEE-EEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence            99984 4555554  34444555433222222  3566777777653  355555666443

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.19  E-value=0.14  Score=58.79  Aligned_cols=118  Identities=11%  Similarity=0.097  Sum_probs=80.8

Q ss_pred             CCEEEEEEeCC----CCEEEEEeCCCeEEEEEcC-----CCeEEEEec-cC--CCC--eEEEEECCCCCEEEEEECCCeE
Q 003271          556 SKVESCHFSPD----GKLLATGGHDKKAVLWCTE-----SFTVKSTLE-EH--TQW--ITDVRFSPSLSRLATSSADRTV  621 (835)
Q Consensus       556 ~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~-----t~~~i~~l~-~h--~~~--V~sv~fspdg~~Latgs~Dg~I  621 (835)
                      ..|..++|.|-    ...|++....+.|.||-+.     ..+.+..-. ..  .-+  -..+.|+|....|++-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            34899999984    3345556678899999764     223221111 11  112  2357799998888877766666


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG  673 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~  673 (835)
                      .++++......++.-....+.|.|.+|..||..++++.+..=.-++||-...
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            6777765554454444566889999999999999888887778889997544

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.10  E-value=0.11  Score=53.09  Aligned_cols=207  Identities=12%  Similarity=0.103  Sum_probs=111.8

Q ss_pred             CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCC-C-CcEEEEEeCCCcEEEEECCC--CeeeeEee----
Q 003271          609 LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-K-EDLLCSCDNNSEIRYWSINN--GSCAGVFK----  680 (835)
Q Consensus       609 g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~-g-~~ll~sgs~Dg~I~iwDl~s--~~~~~~~~----  680 (835)
                      +.++.+--..+.|+-||+.....-...+.+.  ++.++.+--. + ..+.+.++..-.|.-||...  .+..+++.    
T Consensus        27 ~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~ilpv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~  104 (310)
T KOG4499|consen   27 QSLLYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFILPVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQP  104 (310)
T ss_pred             ceEEEEEeccCceehhhhhhhheEEEEEecC--cceeEEEEecCCCceEEEeecceEEEEEcccccceeeeeeeccccCc
Confidence            3445554456777779988765422333322  2333333221 1 23455555555566687432  22333311    


Q ss_pred             ----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC--------CCeEEEEEcCCCCEEEEEe--CCeEE
Q 003271          681 ----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK--------NQVHSVCWNTSGEYLASVS--DELVR  746 (835)
Q Consensus       681 ----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--------~~I~sl~fspdg~~Lasgs--Dg~I~  746 (835)
                          .....-..+|+|++ +.|.....-.++....+....-+.+|.        .--..++|+.+.+.+....  +-+|.
T Consensus       105 d~kknR~NDgkvdP~Gry-y~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  105 DRKKNRLNDGKVDPDGRY-YGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hHHhcccccCccCCCCce-eeeeeccccccccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceEEe
Confidence                22455567888887 455432111122222222222222222        2334678988877766655  66887


Q ss_pred             EEE--cCCCCC--cceEEEeec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeC
Q 003271          747 VWS--IGSGSK--GECIHELSC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST  817 (835)
Q Consensus       747 IwD--l~t~~~--~~~i~~l~~----~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~sp  817 (835)
                      -||  ..++..  .+.+..++.    ..-..-.+++..+|...+++-..++|..+|..+|+.+ .+.-....|+++||--
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            788  444421  233333332    1112233455667777777777779999999999988 5555678899999974


Q ss_pred             C
Q 003271          818 V  818 (835)
Q Consensus       818 d  818 (835)
                      .
T Consensus       264 k  264 (310)
T KOG4499|consen  264 K  264 (310)
T ss_pred             C
Confidence            3

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=97.09  E-value=0.39  Score=50.80  Aligned_cols=192  Identities=13%  Similarity=0.076  Sum_probs=122.7

Q ss_pred             eEEEEecc-CCCCeEEEEECCCCCEEEEEECCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          588 TVKSTLEE-HTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       588 ~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      +.+.++.. .......+.|..++.++-+.+.-|  .|+.+|+.+++..........-.-..++...  +.++.-.-.++.
T Consensus        34 ~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~--d~l~qLTWk~~~  111 (264)
T PF05096_consen   34 EVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG--DKLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET--TEEEEEESSSSE
T ss_pred             EEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC--CEEEEEEecCCe
Confidence            44555542 223456788877787777777665  7999999998754333333333444555553  356667778999


Q ss_pred             EEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC-----CCCeEEEEEcCCCCEE
Q 003271          665 IRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-----KNQVHSVCWNTSGEYL  737 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-----~~~I~sl~fspdg~~L  737 (835)
                      ..+||..+.+.+..+.-.  -..++  .++..|+.......|+++|..+.+....+.-.     -..+..+.|. +|.+.
T Consensus       112 ~f~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~Iy  188 (264)
T PF05096_consen  112 GFVYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIY  188 (264)
T ss_dssp             EEEEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEE
T ss_pred             EEEEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEE
Confidence            999999999988887643  33444  66788888888899999999887766655421     2345566765 56555


Q ss_pred             EEEe-CCeEEEEEcCCCCCcceEEEeec---------------CCCceEEEEEeCCCCEEEEEEcC
Q 003271          738 ASVS-DELVRVWSIGSGSKGECIHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~---------------~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      |-.- ...|...|..++   .++..+..               .....+.|+++|....|++.+..
T Consensus       189 ANVW~td~I~~Idp~tG---~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~  251 (264)
T PF05096_consen  189 ANVWQTDRIVRIDPETG---KVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKL  251 (264)
T ss_dssp             EEETTSSEEEEEETTT----BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT
T ss_pred             EEeCCCCeEEEEeCCCC---eEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCC
Confidence            5554 778888999888   44444321               13568999999998888877754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=97.06  E-value=0.57  Score=49.70  Aligned_cols=267  Identities=10%  Similarity=0.054  Sum_probs=145.0

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE---EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i---~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~  632 (835)
                      +-+..+.++  ++++..+..+.-++|+|+.+...-   ..+. -.+.-.++..  .|++..++..|.-+.++|+.++..+
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~ln-t~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP  161 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLN-TDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSP  161 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceecccc-CCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCc
Confidence            335566666  457777888888999999765433   2222 1133444444  5789998887777889999887653


Q ss_pred             e--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEeec--CceEEEEecCCCEEEEEEcCCcEE
Q 003271          633 L--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFKS--GATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       633 ~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      .  ..+......-..++++  |+ ..+.+..|+-+.+.|+.....   +.....  .+..+..++  ++.+....+..+.
T Consensus       162 ~lagrya~~~~d~~~v~IS--Gn-~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsd--nr~y~vvy~egvl  236 (370)
T COG5276         162 QLAGRYALPGGDTHDVAIS--GN-YAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSD--NRAYLVVYDEGVL  236 (370)
T ss_pred             eeeeeeccCCCCceeEEEe--cC-eEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecC--CeeEEEEcccceE
Confidence            3  2333334444667776  33 444566788999999976533   333332  344444444  4555556666788


Q ss_pred             EEECCCCeEEEEEcC-CCCCeEEE-EEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271          706 ILDVETQVCRLKLQG-HKNQVHSV-CWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       706 IwDl~t~~~i~~l~~-h~~~I~sl-~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~  782 (835)
                      +.|..+.+....+.. ....+.++ .+.-.+++..... +.-+-+.|+.+.........+...+.....+...  +.++.
T Consensus       237 ivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay--~~y~y  314 (370)
T COG5276         237 IVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY--GNYNY  314 (370)
T ss_pred             EEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe--cCeeE
Confidence            888876653333221 12223233 2233455555555 5566777776653323333333222233333322  23333


Q ss_pred             EEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          783 VIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       783 sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+..+ ...+.+....+-. ...+....+.+.+.+-+.+++.+...++.+.||+
T Consensus       315 iadkn-~g~vV~~s~~s~m~~~~g~~ti~~s~~v~~~~q~~y~~d~~~gl~i~~  367 (370)
T COG5276         315 IADKN-TGAVVDASPPSMMDKRPGRPTIGQSCDVSVDTQIIYSTDYNGGLSIIE  367 (370)
T ss_pred             eccCC-ceEEEeCCChhhcccccCcceEeeecceEEEeeEEEEeecCCCEEEEE
Confidence            33333 3334444333222 1112222233344444456788888999999885

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.05  E-value=0.016  Score=65.22  Aligned_cols=134  Identities=13%  Similarity=0.093  Sum_probs=94.1

Q ss_pred             CCEEEE-EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC--------EEEEEeCCeEEEEEcCCCCCcceEEEe
Q 003271          692 LGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE--------YLASVSDELVRVWSIGSGSKGECIHEL  762 (835)
Q Consensus       692 ~~~ll~-~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~--------~LasgsDg~I~IwDl~t~~~~~~i~~l  762 (835)
                      .+.|+. +.....++-.|++.|+.+....-+.. |.-+.+.|+.+        .|+.-++..|.-||.+-.... .+...
T Consensus       345 snlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-kl~~~  422 (644)
T KOG2395|consen  345 SNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-KLAVV  422 (644)
T ss_pred             cceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-eeeee
Confidence            344443 44457899999999999998886655 77777777653        466666889999999854321 22222


Q ss_pred             ec----CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271          763 SC----TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       763 ~~----~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~D  828 (835)
                      ..    ......|++-..+| +|++|+.+|.|++||-...... .+.+...+|..|..+.+|++|++.|..
T Consensus       423 q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~t  492 (644)
T KOG2395|consen  423 QSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATCKT  492 (644)
T ss_pred             eccccccccccceeeecCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEeccc
Confidence            22    23445566655555 6999999999999997332222 677888999999999999988876643

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=97.04  E-value=0.91  Score=51.67  Aligned_cols=258  Identities=14%  Similarity=0.150  Sum_probs=144.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCe-----EEEEeccCCCCeEEEEECC-----CCCEEEEEECCCeEEEEecCCCC------
Q 003271          567 GKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSP-----SLSRLATSSADRTVRVWDTENPD------  630 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~-----~i~~l~~h~~~V~sv~fsp-----dg~~Latgs~Dg~I~IWDl~t~~------  630 (835)
                      ...|++|+.+|.++||+.....     .+... .-..+|..|..-.     +...||+ -.-..+.||.+....      
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            3579999999999999875432     22121 2456788777542     2234444 566788888873211      


Q ss_pred             --ceeEEeecCCC--CeEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEc
Q 003271          631 --YSLRTFTGHST--TVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       631 --~~~~~~~~h~~--~V~sl~fsp----~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~  700 (835)
                        ..+.....|.-  ....+++-|    .++.+++.-+-||.+.+|+-+.....+.+..-  ...++|.+..+.|++++.
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence              22333333432  233333332    33678999999999999998866544444432  456888898899999999


Q ss_pred             CCcEEEEECCCC--------------------e---EEEEEcCCCCCeEEE---EEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003271          701 ENYISILDVETQ--------------------V---CRLKLQGHKNQVHSV---CWNTSGEYLASVSDELVRVWSIGSGS  754 (835)
Q Consensus       701 dg~I~IwDl~t~--------------------~---~i~~l~~h~~~I~sl---~fspdg~~LasgsDg~I~IwDl~t~~  754 (835)
                      +..|..|....-                    +   +-.++. -...+..+   .++.....|++-+...+.+.+-. + 
T Consensus       195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~n-lGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~-G-  271 (418)
T PF14727_consen  195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFN-LGEQALDIQVVRFSSSESDIVVLGERSLFCLKDN-G-  271 (418)
T ss_pred             ceeEEEecHHHhhhccccccccccccccccccccccceeEEE-CCceeEEEEEEEcCCCCceEEEEecceEEEEcCC-C-
Confidence            888888854210                    0   011111 12233333   33334445555666667777653 2 


Q ss_pred             CcceEEEeecCCCceEEEEEeC----CC---CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEE---EeCCCCEEEE
Q 003271          755 KGECIHELSCTGNKFHSCVFHP----TF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLA---ASTVNGMVAS  824 (835)
Q Consensus       755 ~~~~i~~l~~~~~~V~sv~fsp----dg---~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la---~spdg~~LaS  824 (835)
                      ..+..+.+..  .+...+.|.-    ++   ..+++++.++.+.||.=.+-..-....|  ...+|.   |..-...|++
T Consensus       272 ~l~~~krLd~--~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~~--~PVal~v~~~~~~~G~IV~  347 (418)
T PF14727_consen  272 SLRFQKRLDY--NPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLPH--VPVALSVANFNGLKGLIVS  347 (418)
T ss_pred             eEEEEEecCC--ceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCCC--CCEEEEecccCCCCceEEE
Confidence            2223333322  2222222221    22   2488999999999996333222211112  222333   2233458888


Q ss_pred             EECCCcEEE
Q 003271          825 ASHDKCVKI  833 (835)
Q Consensus       825 gs~DG~V~I  833 (835)
                      -+.||.|.+
T Consensus       348 Ls~~G~L~v  356 (418)
T PF14727_consen  348 LSDEGQLSV  356 (418)
T ss_pred             EcCCCcEEE
Confidence            888888765

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.04  E-value=0.00094  Score=47.16  Aligned_cols=31  Identities=29%  Similarity=0.476  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhcCCC
Q 003271            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVS   39 (835)
Q Consensus         9 ~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~   39 (835)
                      +..|+..|++||.+.|+.++|++|.+|.++.
T Consensus         3 ~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        3 RSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             HHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            4579999999999999999999999998765

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PHA02713 hypothetical protein; Provisional

Probab=97.00  E-value=0.038  Score=65.71  Aligned_cols=214  Identities=7%  Similarity=0.017  Sum_probs=106.9

Q ss_pred             eEEEEEcCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEECC------CeEEEEecCCCCceeEEeec---CCCCeEEE
Q 003271          578 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYSLRTFTG---HSTTVMSL  646 (835)
Q Consensus       578 ~I~VWd~~t~~~i~--~l~~h~~~V~sv~fspdg~~Latgs~D------g~I~IWDl~t~~~~~~~~~~---h~~~V~sl  646 (835)
                      .+..||..+.+-..  .+...... .+++. -++.+++.|+.+      ..+..||..+...  .....   ..... ++
T Consensus       273 ~v~~yd~~~~~W~~l~~mp~~r~~-~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W--~~~~~m~~~R~~~-~~  347 (557)
T PHA02713        273 CILVYNINTMEYSVISTIPNHIIN-YASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH--VELPPMIKNRCRF-SL  347 (557)
T ss_pred             CEEEEeCCCCeEEECCCCCccccc-eEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE--eeCCCCcchhhce-eE
Confidence            56778877654332  22111111 12222 256677777754      3577888877643  11111   11111 22


Q ss_pred             EEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeE--eecCceE-EEEecCCCEEEEEEcC-----------------
Q 003271          647 DFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGV--FKSGATQ-MRFQPRLGRILAAAIE-----------------  701 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~~~~~~--~~~~i~~-l~fsp~~~~ll~~s~d-----------------  701 (835)
                      +..  ++.+++.|+.++     .+..||..+.+....  +..+... ....-++..+++|+.+                 
T Consensus       348 ~~~--~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~  425 (557)
T PHA02713        348 AVI--DDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDME  425 (557)
T ss_pred             EEE--CCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEEECCEEEEEeCCCccccccccccccccccc
Confidence            222  245777777654     488899887654332  2211111 1122244555555543                 


Q ss_pred             ------CcEEEEECCCCeEE--EEEcCCCCCeEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCcceEEEeecCC
Q 003271          702 ------NYISILDVETQVCR--LKLQGHKNQVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHELSCTG  766 (835)
Q Consensus       702 ------g~I~IwDl~t~~~i--~~l~~h~~~I~sl~fspdg~~Lasgs-D------g~I~IwDl~t~~~~~~i~~l~~~~  766 (835)
                            ..+..||.++.+-.  ..+...... .+++. -++++.+.|+ +      ..|..||..+......+..+....
T Consensus       426 ~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~-~~~~~-~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r  503 (557)
T PHA02713        426 EDTHSSNKVIRYDTVNNIWETLPNFWTGTIR-PGVVS-HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL  503 (557)
T ss_pred             ccccccceEEEECCCCCeEeecCCCCccccc-CcEEE-ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc
Confidence                  24777888765432  222111111 12222 3455555555 3      246789888721223333333333


Q ss_pred             CceEEEEEeCCCCEEEEEEcCC--eEEEEEcCCCcEEE
Q 003271          767 NKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLT  802 (835)
Q Consensus       767 ~~V~sv~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~  802 (835)
                      .....+++  ++...++|+.++  .+..||..+.+...
T Consensus       504 ~~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~~~~~W~~  539 (557)
T PHA02713        504 SALHTILH--DNTIMMLHCYESYMLQDTFNVYTYEWNH  539 (557)
T ss_pred             ccceeEEE--CCEEEEEeeecceeehhhcCcccccccc
Confidence            33333333  667777888787  78899998887663

>PRK10115 protease 2; Provisional

Probab=96.99  E-value=0.48  Score=57.82  Aligned_cols=198  Identities=9%  Similarity=0.018  Sum_probs=105.4

Q ss_pred             CCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEE
Q 003271          598 QWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRY  667 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~i  667 (835)
                      -.+..+.|+||+++|+.+...     ..|++.|+.++......+.+-   -..++|.++++.++++...+     ..|++
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~---~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~  203 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV---EPSFVWANDSWTFYYVRKHPVTLLPYQVWR  203 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc---ceEEEEeeCCCEEEEEEecCCCCCCCEEEE
Confidence            346778899999988876432     368889998775322222221   14699999988888776533     37888


Q ss_pred             EECCCC--eeeeEeec--C-ce-EEEEecCCCEEEEEEc---CCcEEEEECC--CCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          668 WSINNG--SCAGVFKS--G-AT-QMRFQPRLGRILAAAI---ENYISILDVE--TQVCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       668 wDl~s~--~~~~~~~~--~-i~-~l~fsp~~~~ll~~s~---dg~I~IwDl~--t~~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                      +++.++  +....+..  . .. .+..+.++.++++.+.   ++.+.+++..  ++.....+.........+. +..+.+
T Consensus       204 h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l  282 (686)
T PRK10115        204 HTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HYQHRF  282 (686)
T ss_pred             EECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eCCCEE
Confidence            999887  33333332  1 22 2233447777666554   3578888853  3332222221222222222 223333


Q ss_pred             EEEEe-C-C--eEEEEEcCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC--eEEEEEcCCCcEEEe
Q 003271          737 LASVS-D-E--LVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTL  803 (835)
Q Consensus       737 Lasgs-D-g--~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l  803 (835)
                      ++... + .  .|...++...   .....+..+  ...+..+.+..+ ..+++...++  .|++++..++....+
T Consensus       283 y~~tn~~~~~~~l~~~~~~~~---~~~~~l~~~~~~~~i~~~~~~~~-~l~~~~~~~g~~~l~~~~~~~~~~~~l  353 (686)
T PRK10115        283 YLRSNRHGKNFGLYRTRVRDE---QQWEELIPPRENIMLEGFTLFTD-WLVVEERQRGLTSLRQINRKTREVIGI  353 (686)
T ss_pred             EEEEcCCCCCceEEEecCCCc---ccCeEEECCCCCCEEEEEEEECC-EEEEEEEeCCEEEEEEEcCCCCceEEe
Confidence            33333 2 2  3444444421   112233333  236777777732 3344444455  566667655544443

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=96.98  E-value=1.3  Score=54.02  Aligned_cols=269  Identities=11%  Similarity=0.063  Sum_probs=150.6

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCc-
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY-  631 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~-  631 (835)
                      +.++.--.|+..++.-+.+..|.-..+|... ++.+.+--.-+..-.-+.|+.+  ...|+++. .+.+++.-++.-.. 
T Consensus       629 t~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-~kLv~spls~kev~~~c~f~s~a~~d~l~~~~-~~~l~i~tid~iqkl  706 (1096)
T KOG1897|consen  629 TQPISLRTFSSKSRTAVFALSDRPTVIYSSN-GKLVYSPLSLKEVNHMCPFNSDAYPDSLASAN-GGALTIGTIDEIQKL  706 (1096)
T ss_pred             CCCcEEEEEeeCCceEEEEeCCCCEEEEecC-CcEEEeccchHHhhhhcccccccCCceEEEec-CCceEEEEecchhhc
Confidence            3445555566555444444456666666543 3333221111111111223332  33455554 45577777664322 


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC--------------CcEEEEECCCCeeeeEeec-------CceEEEEec
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN--------------SEIRYWSINNGSCAGVFKS-------GATQMRFQP  690 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D--------------g~I~iwDl~s~~~~~~~~~-------~i~~l~fsp  690 (835)
                      .+++.. -......+++.+... ++.+.+..              ..++++|-++.+.+..++.       .+.+..|..
T Consensus       707 ~irtvp-l~~~prrI~~q~~sl-~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~  784 (1096)
T KOG1897|consen  707 HIRTVP-LGESPRRICYQESSL-TFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTD  784 (1096)
T ss_pred             ceeeec-CCCChhheEecccce-EEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecC
Confidence            234433 334566677776432 33222211              2467788777776655442       244445777


Q ss_pred             C-CCEEEEEEc----------CCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcc
Q 003271          691 R-LGRILAAAI----------ENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE  757 (835)
Q Consensus       691 ~-~~~ll~~s~----------dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~  757 (835)
                      + +.++++|+.          .|.|.+|.......+.....  -.+.+.+++.. +|++|| +-...|++|++.+.   +
T Consensus       785 d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA-~In~~vrLye~t~~---~  859 (1096)
T KOG1897|consen  785 DPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLA-GINQSVRLYEWTTE---R  859 (1096)
T ss_pred             CCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEE-ecCcEEEEEEcccc---c
Confidence            7 566666663          37788887766332222211  23444444432 455444 44778999999887   5


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          758 CIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       758 ~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I--wDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .++.-..+...+..+...-.+..|++|..-+.|.+  |+-..+...  .-..+..+++++.+-.+.. ++.+..+|.+++
T Consensus       860 eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~-ylgae~~gNlf~  938 (1096)
T KOG1897|consen  860 ELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDT-YLGAENSGNLFT  938 (1096)
T ss_pred             eehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCce-EEeecccccEEE
Confidence            55555667788889999999999999998885555  555555455  3346778888888865554 444556666654

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.96  E-value=0.012  Score=71.19  Aligned_cols=131  Identities=9%  Similarity=0.081  Sum_probs=92.5

Q ss_pred             cCCcEEEEECCCCeEEEEEcCCCCC-eEEEEEcC------CCCEEEEEeCCeEEEEEcCCCCCcceEEE---eecCCCce
Q 003271          700 IENYISILDVETQVCRLKLQGHKNQ-VHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHE---LSCTGNKF  769 (835)
Q Consensus       700 ~dg~I~IwDl~t~~~i~~l~~h~~~-I~sl~fsp------dg~~LasgsDg~I~IwDl~t~~~~~~i~~---l~~~~~~V  769 (835)
                      ..+.|+-.|++.|+.+..+..|... |..++-..      ....++.-++..|..||.|-... +++..   .......+
T Consensus       502 ~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~-k~v~~~~k~Y~~~~~F  580 (794)
T PF08553_consen  502 NPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGN-KLVDSQSKQYSSKNNF  580 (794)
T ss_pred             CCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCC-ceeeccccccccCCCc
Confidence            3578999999999999999877654 55554321      23455555688999999987531 23321   11234567


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .|++-+.+| +||+|+.+|.|++||-...... .+.+-..+|.+|..+.||++|++.|.. .|.|
T Consensus       581 s~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc~t-yLlL  643 (794)
T PF08553_consen  581 SCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATCKT-YLLL  643 (794)
T ss_pred             eEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEeecc-eEEE
Confidence            777777777 5999999999999995433322 556778999999999999988877643 4444

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>smart00320 WD40 WD40 repeats

Probab=96.96  E-value=0.002  Score=44.69  Aligned_cols=37  Identities=38%  Similarity=0.592  Sum_probs=33.3

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd  583 (835)
                      .+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            4566678999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.92  E-value=0.27  Score=55.71  Aligned_cols=88  Identities=23%  Similarity=0.350  Sum_probs=56.3

Q ss_pred             EEEEeCCCCEEEEEeCCCeEEE---EEcC-----CCeEEEEec---cCC--CCeEEEEEC-----------CCCCEEEEE
Q 003271          560 SCHFSPDGKLLATGGHDKKAVL---WCTE-----SFTVKSTLE---EHT--QWITDVRFS-----------PSLSRLATS  615 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~V---Wd~~-----t~~~i~~l~---~h~--~~V~sv~fs-----------pdg~~Latg  615 (835)
                      +++.+|++++||.+..+..|.+   |+..     .........   .+.  ..|+++.|-           +|...+++|
T Consensus         6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG   85 (415)
T PF14655_consen    6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG   85 (415)
T ss_pred             eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence            4688999999999987776665   5431     122222211   122  567777664           346789999


Q ss_pred             ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEc
Q 003271          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH  649 (835)
Q Consensus       616 s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs  649 (835)
                      ..+|.|++|... +.. +..-.-|..+|..|.+.
T Consensus        86 ~ssG~vrfyte~-G~L-L~~Q~~h~~pV~~ik~~  117 (415)
T PF14655_consen   86 TSSGYVRFYTEN-GVL-LLSQLLHEEPVLKIKCR  117 (415)
T ss_pred             ecccEEEEEecc-chH-HHHHhcCccceEEEEec
Confidence            999999999875 333 33333466777777664

>smart00320 WD40 WD40 repeats

Probab=96.92  E-value=0.0027  Score=44.01  Aligned_cols=39  Identities=41%  Similarity=0.578  Sum_probs=34.5

Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ++.+..+..|...|.++.|.+++.++++++.|+.|++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            355667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.88  E-value=0.052  Score=64.58  Aligned_cols=229  Identities=12%  Similarity=0.085  Sum_probs=118.5

Q ss_pred             CCCEEEEEeCC------CeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECC------CeEEEEecCCCCce
Q 003271          566 DGKLLATGGHD------KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWDTENPDYS  632 (835)
Q Consensus       566 dg~~Lasgs~D------g~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~D------g~I~IWDl~t~~~~  632 (835)
                      .+.+++.||.+      ..|..||..+........- +...-.++++. ++.++++|+.|      .++.+||..++...
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~  362 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWT  362 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCcee
Confidence            34456666665      3677888877643322211 22223344444 45788889888      36788888876631


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEee--cCceEEE-EecCCCEEEEEEcC---
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFK--SGATQMR-FQPRLGRILAAAIE---  701 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~~~~~~~~--~~i~~l~-fsp~~~~ll~~s~d---  701 (835)
                        ....-...-..+....-+..+.+.|+.||     .|..||..+.+....-.  ....... ..-++..+++|+.+   
T Consensus       363 --~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~  440 (571)
T KOG4441|consen  363 --PVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSS  440 (571)
T ss_pred             --ccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCc
Confidence              11111111111111122356888888886     47778887765433221  1222222 23344555566644   


Q ss_pred             ---CcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCcceEEEeecCCCceE
Q 003271          702 ---NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH  770 (835)
Q Consensus       702 ---g~I~IwDl~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs-Dg-----~I~IwDl~t~~~~~~i~~l~~~~~~V~  770 (835)
                         ..+..||..++.-..  .+..-... ..++. -++.+.+.|+ |+     +|..||..+..- ..+.........+.
T Consensus       441 ~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W-~~v~~m~~~rs~~g  517 (571)
T KOG4441|consen  441 NCLNSVECYDPETNTWTLIAPMNTRRSG-FGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQW-TMVAPMTSPRSAVG  517 (571)
T ss_pred             cccceEEEEcCCCCceeecCCccccccc-ceEEE-ECCEEEEECCccCCCccceEEEEcCCCCce-eEcccCcccccccc
Confidence               357788887764432  22211111 12333 2455556665 55     478888877521 22221222222222


Q ss_pred             EEEEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEE
Q 003271          771 SCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLT  802 (835)
Q Consensus       771 sv~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~  802 (835)
                      .+.  -++...++|+.|+     +|..||..+.+...
T Consensus       518 ~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~  552 (571)
T KOG4441|consen  518 VVV--LGGKLYAVGGFDGNNNLNTVECYDPETDTWTE  552 (571)
T ss_pred             EEE--ECCEEEEEecccCccccceeEEcCCCCCceee
Confidence            222  2455666777665     78888887777653

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.82  E-value=0.037  Score=50.48  Aligned_cols=101  Identities=21%  Similarity=0.214  Sum_probs=67.6

Q ss_pred             EEEEEEeC---CC-CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          558 VESCHFSP---DG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       558 V~sl~fSp---dg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      |+++++..   || +.|++|+.|..|+||+-+  +.+..+..+ +.|++++-... ..|+.+..+|+|-+|+-....  .
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~-~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~Rl--W   75 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITET-DKVTSLCSLGG-GRFAYALANGTVGVYDRSQRL--W   75 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecc-cceEEEEEcCC-CEEEEEecCCEEEEEeCccee--e
Confidence            66666654   43 469999999999999855  566666544 55777776655 679999999999999865422  2


Q ss_pred             EEeecCCCCeEEEEEcC---CCCcEEEEEeCCCcEE
Q 003271          634 RTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIR  666 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp---~g~~ll~sgs~Dg~I~  666 (835)
                      +.-.  +..+.++.+..   +|..-|++|-.+|.|-
T Consensus        76 RiKS--K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   76 RIKS--KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             eecc--CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            2222  23366665543   4445566787788764

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.81  E-value=0.05  Score=64.69  Aligned_cols=206  Identities=10%  Similarity=0.041  Sum_probs=106.5

Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEee--cCceEEEE-e
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFK--SGATQMRF-Q  689 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~s~~~~~~~~--~~i~~l~f-s  689 (835)
                      ..|..||..++......-........++++..  +.++++|+.|      ..+..||..+.+....-+  ..-..... .
T Consensus       301 ~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~  378 (571)
T KOG4441|consen  301 RSVECYDPKTNEWSSLAPMPSPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV  378 (571)
T ss_pred             ceeEEecCCcCcEeecCCCCcccccccEEEEC--CEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence            35777887766432111111223344555553  3688888888      367889988776443211  11111222 2


Q ss_pred             cCCCEEEEEEcCC-----cEEEEECCCCeEEEEEcCCCCCeEEE-EEcCCCCEEEEEe-CC------eEEEEEcCCCCCc
Q 003271          690 PRLGRILAAAIEN-----YISILDVETQVCRLKLQGHKNQVHSV-CWNTSGEYLASVS-DE------LVRVWSIGSGSKG  756 (835)
Q Consensus       690 p~~~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~h~~~I~sl-~fspdg~~Lasgs-Dg------~I~IwDl~t~~~~  756 (835)
                      -+|...++|+.||     .|..||..+.+-...-. ......+. ...-+|.+.++|+ ++      +|..||..++.- 
T Consensus       379 l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~-m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W-  456 (571)
T KOG4441|consen  379 LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAP-MLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTW-  456 (571)
T ss_pred             ECCEEEEEeccccccccccEEEecCCCCcccccCC-CCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCce-
Confidence            2345566677765     47788887653322111 11112221 1223566666666 43      688888877621 


Q ss_pred             ceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEEeccCCCCeeEEEE-eCCCCEEEEEECCCc
Q 003271          757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDKLVSSLAA-STVNGMVASASHDKC  830 (835)
Q Consensus       757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~~h~~~V~~la~-spdg~~LaSgs~DG~  830 (835)
                      ..+........... ++ .-++...++||.++     +|..||..+.+...+..-......+.. .-++.+.+.|+.||.
T Consensus       457 ~~~~~M~~~R~~~g-~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~~~~ly~vGG~~~~  534 (571)
T KOG4441|consen  457 TLIAPMNTRRSGFG-VA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVLGGKLYAVGGFDGN  534 (571)
T ss_pred             eecCCcccccccce-EE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEECCEEEEEecccCc
Confidence            12222221111222 22 22555666677665     588999999887755432222222211 225677888888874

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.78  E-value=0.37  Score=51.27  Aligned_cols=189  Identities=10%  Similarity=0.018  Sum_probs=107.6

Q ss_pred             CeEEEEEcCCCCcEEEEE--eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEE-CCCCeEE-EE
Q 003271          642 TVMSLDFHPSKEDLLCSC--DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILD-VETQVCR-LK  717 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sg--s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwD-l~t~~~i-~~  717 (835)
                      .+.+.++++++..+.+..  .....++++...................|++++...++...+....++. ...+... ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~  104 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE  104 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence            688999999998777766  3344555555443222222223577788999966666666566666663 3333221 12


Q ss_pred             EcC--CCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCc------ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          718 LQG--HKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKG------ECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       718 l~~--h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~------~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      +..  ....|..+.++|||..++...    ++.|.|--+......      ..+.........+..+.|.+++.+++.+.
T Consensus       105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~  184 (253)
T PF10647_consen  105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR  184 (253)
T ss_pred             ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence            221  122899999999999888776    567777766533222      11222223356889999999998777766


Q ss_pred             cCCe-EEE-EEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          786 CYET-LEL-WNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       786 ~dg~-I~I-wDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                      ..+. +.. +....+....+..-...+..++...+...++.. .++.|
T Consensus       185 ~~~~~~~~~v~~dG~~~~~l~~~~~~~~v~a~~~~~~~~~~t-~~~~~  231 (253)
T PF10647_consen  185 SAGGPVVRLVSVDGGPSTPLPSVNLGVPVVAVAASPSTVYVT-DDGGV  231 (253)
T ss_pred             CCCCceeEEEEccCCcccccCCCCCCcceEEeeCCCcEEEEE-CCCcE
Confidence            6552 333 444444433332333333344444444443333 34433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK13684 Ycf48-like protein; Provisional

Probab=96.77  E-value=1.3  Score=49.22  Aligned_cols=268  Identities=7%  Similarity=0.000  Sum_probs=131.1

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe----ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL----EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l----~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~  630 (835)
                      ...+++|+|..+.+-+++|. ++.|.. ..+.++.-...    ......+.++.|..+ ..+++ +..+.  ||...++.
T Consensus        45 ~~~l~~v~F~d~~~g~avG~-~G~il~-T~DgG~tW~~~~~~~~~~~~~l~~v~~~~~-~~~~~-G~~g~--i~~S~DgG  118 (334)
T PRK13684         45 EANLLDIAFTDPNHGWLVGS-NRTLLE-TNDGGETWEERSLDLPEENFRLISISFKGD-EGWIV-GQPSL--LLHTTDGG  118 (334)
T ss_pred             CCceEEEEEeCCCcEEEEEC-CCEEEE-EcCCCCCceECccCCcccccceeeeEEcCC-cEEEe-CCCce--EEEECCCC
Confidence            55799999986666666664 454332 11222222211    112334778888654 34444 45554  33333332


Q ss_pred             ceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe----ecCceEEEEecCCCEEEEEEcCCc
Q 003271          631 YSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KSGATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       631 ~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~~~i~~l~fsp~~~~ll~~s~dg~  703 (835)
                      .......   ........+.....+ .+++++ ..|.|.. ..+.++.-..+    ...+..+.+.+++. +++.+..|.
T Consensus       119 ~tW~~~~~~~~~~~~~~~i~~~~~~-~~~~~g-~~G~i~~-S~DgG~tW~~~~~~~~g~~~~i~~~~~g~-~v~~g~~G~  194 (334)
T PRK13684        119 KNWTRIPLSEKLPGSPYLITALGPG-TAEMAT-NVGAIYR-TTDGGKNWEALVEDAAGVVRNLRRSPDGK-YVAVSSRGN  194 (334)
T ss_pred             CCCeEccCCcCCCCCceEEEEECCC-cceeee-ccceEEE-ECCCCCCceeCcCCCcceEEEEEECCCCe-EEEEeCCce
Confidence            2122211   011112222222222 233333 3343322 11222221111    23467788888754 445555565


Q ss_pred             EEEE-ECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEE
Q 003271          704 ISIL-DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       704 I~Iw-Dl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L  781 (835)
                      +..- |-....-..........++++.+.+++..++++..|.+++=....+.....+..- ......+..+.+.+++. +
T Consensus       195 i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~~G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~-~  273 (334)
T PRK13684        195 FYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLARGGQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGE-I  273 (334)
T ss_pred             EEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEecCCEEEEccCCCCCccccccCCccccccceeeEEEcCCCC-E
Confidence            5432 2221111112223456789999999999888887886653233333221211110 11224578889998776 5


Q ss_pred             EEEEcCCeEEEEEcCCCcEE-Ee---ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          782 LVIGCYETLELWNMTENKTL-TL---SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~~~~-~l---~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++++.+|.|.. ....++.- ..   ..-....+.+.|..+++.++ .+..|.|..|+
T Consensus       274 ~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~~  329 (334)
T PRK13684        274 WAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRYV  329 (334)
T ss_pred             EEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEec
Confidence            66666776653 44544433 22   12224577888877666655 55678877664

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.68  E-value=1.1  Score=48.77  Aligned_cols=266  Identities=9%  Similarity=0.065  Sum_probs=122.2

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc-CCCeEEEEe--ccC---CCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCT-ESFTVKSTL--EEH---TQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~-~t~~~i~~l--~~h---~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      -...+.+|.|..+..-+++|. .+.|  +.. +.|+.-...  ...   .-...+|.|..+ ..+++ +..+ +.+...+
T Consensus        15 t~~~l~dV~F~d~~~G~~VG~-~g~i--l~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~-~g~iv-G~~g-~ll~T~D   88 (302)
T PF14870_consen   15 TDKPLLDVAFVDPNHGWAVGA-YGTI--LKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGN-EGWIV-GEPG-LLLHTTD   88 (302)
T ss_dssp             -SS-EEEEEESSSS-EEEEET-TTEE--EEESSTTSS-EE-----S-----EEEEEEEETT-EEEEE-EETT-EEEEESS
T ss_pred             CCCceEEEEEecCCEEEEEec-CCEE--EEECCCCccccccccCCCccceeeEEEEEecCC-ceEEE-cCCc-eEEEecC
Confidence            345799999996565566654 4543  333 222221111  111   124667888643 34444 4455 3333333


Q ss_pred             CCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecCceEEEEecCCCEEEEEEc
Q 003271          628 NPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       628 t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~i~~l~fsp~~~~ll~~s~  700 (835)
                      .+.. ...+.   .-......+....++ ..++++ ..|.|+. ..+.++.-..    ..+.+..+..++++.+++++..
T Consensus        89 gG~t-W~~v~l~~~lpgs~~~i~~l~~~-~~~l~~-~~G~iy~-T~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~  164 (302)
T PF14870_consen   89 GGKT-WERVPLSSKLPGSPFGITALGDG-SAELAG-DRGAIYR-TTDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSR  164 (302)
T ss_dssp             TTSS--EE----TT-SS-EEEEEEEETT-EEEEEE-TT--EEE-ESSTTSSEEEEE-S----EEEEEE-TTS-EEEEETT
T ss_pred             CCCC-cEEeecCCCCCCCeeEEEEcCCC-cEEEEc-CCCcEEE-eCCCCCCeeEcccCCcceeEeEEECCCCcEEEEECc
Confidence            3332 22221   122333444444333 233333 3444332 2222322111    1244667777888877776655


Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEE----EeecCCCceEEEEEeC
Q 003271          701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH----ELSCTGNKFHSCVFHP  776 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~----~l~~~~~~V~sv~fsp  776 (835)
                      ...+.-||--...-...-......|.++.|.+++.+.+.+..|.|++=+.....  ....    .+......+..++|.+
T Consensus       165 G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~~Gg~~~~s~~~~~~--~~w~~~~~~~~~~~~~~ld~a~~~  242 (302)
T PF14870_consen  165 GNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLARGGQIQFSDDPDDG--ETWSEPIIPIKTNGYGILDLAYRP  242 (302)
T ss_dssp             SSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEETTTEEEEEE-TTEE--EEE---B-TTSS--S-EEEEEESS
T ss_pred             ccEEEEecCCCccceEEccCccceehhceecCCCCEEEEeCCcEEEEccCCCCc--cccccccCCcccCceeeEEEEecC
Confidence            555567776533222222235678999999999988887778888887722110  1111    1222344588999998


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEEEec----cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTLTLS----AHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~~l~----~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ++. +.+++..|.| +...+.++.-...    .-...++.|.|..+.+-+| .+.||.|.-|
T Consensus       243 ~~~-~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~~  301 (302)
T PF14870_consen  243 PNE-IWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLRY  301 (302)
T ss_dssp             SS--EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEEE
T ss_pred             CCC-EEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEEe
Confidence            876 5555556644 3455666544222    3345688899876655555 4578887665

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.65  E-value=0.45  Score=50.61  Aligned_cols=160  Identities=14%  Similarity=0.195  Sum_probs=107.7

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccC-CCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +.+-...|.++.|+|+.+.|++......-.||=..+|..+.++.-. -.....|.|.-++.++++--.++.+.++.++..
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            3455555999999999999998888888888888889998887421 123456788888888888777888988887765


Q ss_pred             Ccee---------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-ee------------eEeecCceEEE
Q 003271          630 DYSL---------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CA------------GVFKSGATQMR  687 (835)
Q Consensus       630 ~~~~---------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~------------~~~~~~i~~l~  687 (835)
                      ...+         ......+.....++|.|..+.+++ +-+..-+.||.+.... .+            ..+-..+..+.
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~-aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~  239 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFV-AKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE  239 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEE-EEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence            3221         111222566889999999776664 4445666666654332 11            11224477788


Q ss_pred             EecCCCEEEEEEcC-CcEEEEECCC
Q 003271          688 FQPRLGRILAAAIE-NYISILDVET  711 (835)
Q Consensus       688 fsp~~~~ll~~s~d-g~I~IwDl~t  711 (835)
                      |++..+.+++-+.+ +.+.-.|...
T Consensus       240 ~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         240 FNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             ecCCCCcEEEEecCCceEEEEecCC
Confidence            88877777776654 5566666653

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.61  E-value=0.0078  Score=68.92  Aligned_cols=92  Identities=15%  Similarity=0.282  Sum_probs=73.6

Q ss_pred             ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271          680 KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVH-SVCWNTSGEYLASVS-DELVRVWSIGSGSKGE  757 (835)
Q Consensus       680 ~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~-sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~  757 (835)
                      ...+..+.|+|.-..++.+..+|.|.++.+. ...+.++.-|...++ ++||.|||++|++|- ||+|++.|+.++   .
T Consensus        20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~---~   95 (665)
T KOG4640|consen   20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKG---G   95 (665)
T ss_pred             ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCC---C
Confidence            3557778899999999999999999999988 777888876777777 999999999999998 999999999987   3


Q ss_pred             eEEE-eecCCCceEEEEEe
Q 003271          758 CIHE-LSCTGNKFHSCVFH  775 (835)
Q Consensus       758 ~i~~-l~~~~~~V~sv~fs  775 (835)
                      .+.. .......|.++.|.
T Consensus        96 ~l~~~~~s~e~~is~~~w~  114 (665)
T KOG4640|consen   96 RLVSFLFSVETDISKGIWD  114 (665)
T ss_pred             ceeccccccccchheeecc
Confidence            3333 22234556666665

>PHA02713 hypothetical protein; Provisional

Probab=96.60  E-value=0.13  Score=61.20  Aligned_cols=175  Identities=7%  Similarity=-0.052  Sum_probs=86.2

Q ss_pred             CcEEEEEeCC------CcEEEEECCCCeeeeEe--ecC-ceEEEEecCCCEEEEEEcCC-----cEEEEECCCCeEEE--
Q 003271          653 EDLLCSCDNN------SEIRYWSINNGSCAGVF--KSG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRL--  716 (835)
Q Consensus       653 ~~ll~sgs~D------g~I~iwDl~s~~~~~~~--~~~-i~~l~fsp~~~~ll~~s~dg-----~I~IwDl~t~~~i~--  716 (835)
                      +.+++.|+.+      ..+..||..+......-  ..+ .......-++..+++|+.++     .+..||..+.+-..  
T Consensus       304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~  383 (557)
T PHA02713        304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLP  383 (557)
T ss_pred             CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEECC
Confidence            4577777643      35788998876543211  111 11122233455556666543     48889988654322  


Q ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEe-CC-----------------------eEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          717 KLQGHKNQVHSVCWNTSGEYLASVS-DE-----------------------LVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       717 ~l~~h~~~I~sl~fspdg~~Lasgs-Dg-----------------------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      .+.........+.  -+|.+.+.|+ ++                       .|..||..+..- ..+..+...  .....
T Consensus       384 ~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W-~~v~~m~~~--r~~~~  458 (557)
T PHA02713        384 DMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIW-ETLPNFWTG--TIRPG  458 (557)
T ss_pred             CCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeE-eecCCCCcc--cccCc
Confidence            1111111111222  2566666665 42                       477788776521 111111111  11111


Q ss_pred             EEeCCCCEEEEEEcC------CeEEEEEcCC-CcEEEec---cCCCCeeEEEEeCCCCEEEEEECCC--cEEEe
Q 003271          773 VFHPTFPSLLVIGCY------ETLELWNMTE-NKTLTLS---AHDKLVSSLAASTVNGMVASASHDK--CVKIW  834 (835)
Q Consensus       773 ~fspdg~~L~sgs~d------g~I~IwDl~~-~~~~~l~---~h~~~V~~la~spdg~~LaSgs~DG--~V~IW  834 (835)
                      +..-++...++|+.+      ..|..||..+ .+.....   ...... +++. -++++.++||.||  .|..|
T Consensus       459 ~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~-~~~~-~~~~iyv~Gg~~~~~~~e~y  530 (557)
T PHA02713        459 VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL-HTIL-HDNTIMMLHCYESYMLQDTF  530 (557)
T ss_pred             EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc-eeEE-ECCEEEEEeeecceeehhhc
Confidence            222345555556543      2578899987 5655322   222222 2222 2688899999888  44444

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.48  E-value=1.5  Score=46.47  Aligned_cols=190  Identities=14%  Similarity=0.135  Sum_probs=113.1

Q ss_pred             eEEEEEecCCCCC-EEEEEEeCCCCEEEEEeCCC--eEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEECCCe
Q 003271          545 FTEFQLIPASTSK-VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRT  620 (835)
Q Consensus       545 ~~~i~~l~gH~~~-V~sl~fSpdg~~Lasgs~Dg--~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~  620 (835)
                      +..+..++..... .-.+.|..+|.++-+.+.-|  .|+.+|+++++......-.. -.--.|+...| +++...=.++.
T Consensus        33 ~~vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d-~l~qLTWk~~~  111 (264)
T PF05096_consen   33 YEVVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD-KLYQLTWKEGT  111 (264)
T ss_dssp             EEEEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT-EEEEEESSSSE
T ss_pred             eEEEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC-EEEEEEecCCe
Confidence            3444444433333 34677877888888887666  78999999998875553222 12233444433 33344446789


Q ss_pred             EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------CceEEEEecCC
Q 003271          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------GATQMRFQPRL  692 (835)
Q Consensus       621 I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------~i~~l~fsp~~  692 (835)
                      +.+||..+-+. +..+. ....=+.++.  ++..++.| +....|+++|..+.+..+.+..        .+..+.+.  +
T Consensus       112 ~f~yd~~tl~~-~~~~~-y~~EGWGLt~--dg~~Li~S-DGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i--~  184 (264)
T PF05096_consen  112 GFVYDPNTLKK-IGTFP-YPGEGWGLTS--DGKRLIMS-DGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI--N  184 (264)
T ss_dssp             EEEEETTTTEE-EEEEE--SSS--EEEE--CSSCEEEE--SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE--T
T ss_pred             EEEEccccceE-EEEEe-cCCcceEEEc--CCCEEEEE-CCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE--c
Confidence            99999987653 44443 2345567763  45556544 4477899999988877665541        24445555  3


Q ss_pred             CEEEEEE-cCCcEEEEECCCCeEEEEEcC------------C---CCCeEEEEEcCCCCEEEEEeC
Q 003271          693 GRILAAA-IENYISILDVETQVCRLKLQG------------H---KNQVHSVCWNTSGEYLASVSD  742 (835)
Q Consensus       693 ~~ll~~s-~dg~I~IwDl~t~~~i~~l~~------------h---~~~I~sl~fspdg~~LasgsD  742 (835)
                      +.+++-- ....|...|..+|+++..+.-            +   ..-...|+|+|....|...+.
T Consensus       185 G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK  250 (264)
T PF05096_consen  185 GKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK  250 (264)
T ss_dssp             TEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred             CEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence            5555544 467899999999998876531            1   245789999987766665553

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.44  E-value=0.25  Score=52.08  Aligned_cols=170  Identities=14%  Similarity=0.146  Sum_probs=109.2

Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEE-cCC-cEEEEECCCCeEEEEEcCCCC--C
Q 003271          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAA-IEN-YISILDVETQVCRLKLQGHKN--Q  724 (835)
Q Consensus       649 sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s-~dg-~I~IwDl~t~~~i~~l~~h~~--~  724 (835)
                      ..++.+.+++.+.+|.|..-        ..+......++++|....-++.. .-| ...+||.........+...+.  .
T Consensus        44 ~~dgs~g~a~~~eaGk~v~~--------~~lpaR~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHf  115 (366)
T COG3490          44 ARDGSFGAATLSEAGKIVFA--------TALPARGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHF  115 (366)
T ss_pred             ccCCceeEEEEccCCceeee--------eecccccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCcee
Confidence            45555555555555544211        11233456677888765544433 333 467888887655544432221  1


Q ss_pred             eEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------
Q 003271          725 VHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------  787 (835)
Q Consensus       725 I~sl~fspdg~~Lasgs------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----------  787 (835)
                      .-.=+|++||.+|++..      -|.|-|||.+.+  ...+-++..|+-....+.|.+||+.++++...           
T Consensus       116 yGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~  193 (366)
T COG3490         116 YGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTE  193 (366)
T ss_pred             ecccccCCCCcEEEeecCCCCCCCceEEEEecccc--cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccc
Confidence            22347999999999876      258999999854  36778888899999999999999988887541           


Q ss_pred             -------CeEEEEEcCCCcEE---Eec--cCCCCeeEEEEeCCCCEEEEEECC
Q 003271          788 -------ETLELWNMTENKTL---TLS--AHDKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       788 -------g~I~IwDl~~~~~~---~l~--~h~~~V~~la~spdg~~LaSgs~D  828 (835)
                             -++.+.|..++.++   ++.  .+.-.|..++..+||..++.|-..
T Consensus       194 lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~  246 (366)
T COG3490         194 LNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYR  246 (366)
T ss_pred             cchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEee
Confidence                   14555565566555   233  355678899999988877665443

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.44  E-value=2.1  Score=47.53  Aligned_cols=66  Identities=8%  Similarity=-0.009  Sum_probs=41.1

Q ss_pred             CceEEEEEeCC-------CCEEEEEEcCCeEEEEEcCCCcEE----Ee-ccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          767 NKFHSCVFHPT-------FPSLLVIGCYETLELWNMTENKTL----TL-SAHDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       767 ~~V~sv~fspd-------g~~L~sgs~dg~I~IwDl~~~~~~----~l-~~h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      ..+..+.|...       +.++++.-..+.|...+++++..+    .+ ......+..|++.|||.++++.+.+|.|.
T Consensus       253 ~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  253 SAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             --EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            45666666543       334444444558888888755332    22 23445899999999999999888888875

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.35  E-value=2.6  Score=47.65  Aligned_cols=218  Identities=9%  Similarity=0.046  Sum_probs=103.9

Q ss_pred             CCCEEEEEE-CCCeEEEEecCCCC-c--eeEEeec---CC----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEEC
Q 003271          608 SLSRLATSS-ADRTVRVWDTENPD-Y--SLRTFTG---HS----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSI  670 (835)
Q Consensus       608 dg~~Latgs-~Dg~I~IWDl~t~~-~--~~~~~~~---h~----~~V~sl~fsp~g~~ll~sgs------~Dg~I~iwDl  670 (835)
                      +.++|+..+ ..+.|+|.|+.+.. .  ..+++..   +.    .....+...|+|+ +++++-      .-|.+.++|-
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~-imIS~lGd~~G~g~Ggf~llD~  164 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGR-IMISALGDADGNGPGGFVLLDG  164 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCcc-EEEEeccCCCCCCCCcEEEEcC
Confidence            456777776 57889999998432 1  1222221   10    1223344457765 555542      2356888888


Q ss_pred             CCCeeeeEeecC------ceEEEEecCCCEEEEEEc--------------------CCcEEEEECCCCeEEEEEcCCCC-
Q 003271          671 NNGSCAGVFKSG------ATQMRFQPRLGRILAAAI--------------------ENYISILDVETQVCRLKLQGHKN-  723 (835)
Q Consensus       671 ~s~~~~~~~~~~------i~~l~fsp~~~~ll~~s~--------------------dg~I~IwDl~t~~~i~~l~~h~~-  723 (835)
                      ++.+.......+      ...+-|.|..+.+++...                    ...+.+||+.+.+.+.++.--.. 
T Consensus       165 ~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g  244 (461)
T PF05694_consen  165 ETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEG  244 (461)
T ss_dssp             TT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTE
T ss_pred             ccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCC
Confidence            887777666532      456778888888777542                    34699999999999988874332 


Q ss_pred             -CeEEEEE--cCCCCEEEEEe--CCeEEEEEcCCCCCc--ceEEEeecC-----------------CCceEEEEEeCCCC
Q 003271          724 -QVHSVCW--NTSGEYLASVS--DELVRVWSIGSGSKG--ECIHELSCT-----------------GNKFHSCVFHPTFP  779 (835)
Q Consensus       724 -~I~sl~f--spdg~~Lasgs--Dg~I~IwDl~t~~~~--~~i~~l~~~-----------------~~~V~sv~fspdg~  779 (835)
                       ....|.|  .|+..+-++++  ...|..|--......  +.+..+...                 ..-|+.+.+|.|.+
T Consensus       245 ~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDr  324 (461)
T PF05694_consen  245 QMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDR  324 (461)
T ss_dssp             EEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-
T ss_pred             CceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCC
Confidence             2445666  45555555554  555555544222111  122222111                 24578999999999


Q ss_pred             EEEEEEc-CCeEEEEEcCCCcEEEe-----cc---------------CCCCeeEEEEeCCCCEEEEEE
Q 003271          780 SLLVIGC-YETLELWNMTENKTLTL-----SA---------------HDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       780 ~L~sgs~-dg~I~IwDl~~~~~~~l-----~~---------------h~~~V~~la~spdg~~LaSgs  826 (835)
                      +|++++. +|.|+.||+.....-++     .+               -.+...-|..|.||+.|...+
T Consensus       325 fLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  325 FLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             EEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            9998886 67999999987432111     11               112346678888998766543

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.32  E-value=0.045  Score=61.72  Aligned_cols=152  Identities=14%  Similarity=0.187  Sum_probs=96.6

Q ss_pred             EeCCCCEE-EEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCC-------EEEEEECCCeEEEEecCCCCceeE
Q 003271          563 FSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLS-------RLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       563 fSpdg~~L-asgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~-------~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      ...+..+| .++..-..|+--|++.|+.+...+-|.+ |.-+.+.|+.+       .-+.|-.|..|+-||.+-....  
T Consensus       341 ~~~dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~--  417 (644)
T KOG2395|consen  341 HRADSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN--  417 (644)
T ss_pred             hccccceEeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc--
Confidence            33444544 4455667788889999999999987776 77778887643       2234555666777776522210  


Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVC  714 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~  714 (835)
                                -++|... +. +.++                     ....|.+ ....++|++|+.+|.|++||--....
T Consensus       418 ----------kl~~~q~-kq-y~~k---------------------~nFsc~a-TT~sG~IvvgS~~GdIRLYdri~~~A  463 (644)
T KOG2395|consen  418 ----------KLAVVQS-KQ-YSTK---------------------NNFSCFA-TTESGYIVVGSLKGDIRLYDRIGRRA  463 (644)
T ss_pred             ----------eeeeeec-cc-cccc---------------------cccceee-ecCCceEEEeecCCcEEeehhhhhhh
Confidence                      1111100 00 0000                     0011111 12247788999999999998743344


Q ss_pred             EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003271          715 RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG  751 (835)
Q Consensus       715 i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~  751 (835)
                      ...+.+...+|..|..+.+|++|++.++..+.+.++.
T Consensus       464 KTAlPgLG~~I~hVdvtadGKwil~Tc~tyLlLi~t~  500 (644)
T KOG2395|consen  464 KTALPGLGDAIKHVDVTADGKWILATCKTYLLLIDTL  500 (644)
T ss_pred             hhcccccCCceeeEEeeccCcEEEEecccEEEEEEEe
Confidence            4556778889999999999999999999888888764

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.25  E-value=1.5  Score=53.85  Aligned_cols=224  Identities=11%  Similarity=0.068  Sum_probs=113.4

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC--------eEEEEECC----------------CCCEEEEEECCCeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--------ITDVRFSP----------------SLSRLATSSADRTVR  622 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~--------V~sv~fsp----------------dg~~Latgs~Dg~I~  622 (835)
                      +..|+.++.++.|.-.|..+++.+.++......        ...+.+..                ++..|+.++.|+.|.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            446777777889999999999988776432211        11233321                344788888999999


Q ss_pred             EEecCCCCceeEEeecCCCCeE-------------EEEEcC--CCCcEEEEEe----------CCCcEEEEECCCCeeee
Q 003271          623 VWDTENPDYSLRTFTGHSTTVM-------------SLDFHP--SKEDLLCSCD----------NNSEIRYWSINNGSCAG  677 (835)
Q Consensus       623 IWDl~t~~~~~~~~~~h~~~V~-------------sl~fsp--~g~~ll~sgs----------~Dg~I~iwDl~s~~~~~  677 (835)
                      -.|.++++.+.. +. ..+.|.             .+.-.|  .++.++ .|+          .+|.|+-+|.++|+.+.
T Consensus       274 ALDA~TGk~~W~-fg-~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VI-vG~~v~d~~~~~~~~G~I~A~Da~TGkl~W  350 (764)
T TIGR03074       274 ALDADTGKLCED-FG-NNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVV-IGGRVADNYSTDEPSGVIRAFDVNTGALVW  350 (764)
T ss_pred             EEECCCCCEEEE-ec-CCCceeeecccCcCCCcccccccCCEEECCEEE-EEecccccccccCCCcEEEEEECCCCcEee
Confidence            999999886432 21 111110             011111  123334 443          26889999999999988


Q ss_pred             EeecCceEEE-EecCCCEEEEEEcCC-cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271          678 VFKSGATQMR-FQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       678 ~~~~~i~~l~-fsp~~~~ll~~s~dg-~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~  754 (835)
                      .+........ ..+.+.....++.+. ....+|.+.+....-. +...    ..+....+...... .+.|.-.|.++++
T Consensus       351 ~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt-Gn~~----pd~~g~~r~~~~n~y~~slvALD~~TGk  425 (764)
T TIGR03074       351 AWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPM-GNQT----PDQWGGDRTPADEKYSSSLVALDATTGK  425 (764)
T ss_pred             EEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeC-CCcc----ccccCCccccCcccccceEEEEeCCCCc
Confidence            7763211100 011222221121111 3334555544432211 1111    01100000000001 3456666666662


Q ss_pred             CcceEEEeec--CC-------CceEEEEEeC-CC---CEEEEEEcCCeEEEEEcCCCcEE
Q 003271          755 KGECIHELSC--TG-------NKFHSCVFHP-TF---PSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       755 ~~~~i~~l~~--~~-------~~V~sv~fsp-dg---~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                         ..-.+..  |.       ....-+.+.. +|   +.++.++.+|.++++|.++++.+
T Consensus       426 ---~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l  482 (764)
T TIGR03074       426 ---ERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPI  482 (764)
T ss_pred             ---eEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEE
Confidence               2222211  11       1111122222 45   37889999999999999999977

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=96.20  E-value=0.0052  Score=62.49  Aligned_cols=139  Identities=14%  Similarity=0.080  Sum_probs=80.7

Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEe---ecCce-E
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF---KSGAT-Q  685 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~---~~~i~-~  685 (835)
                      .|..-+.||.|+-+++...+...+....|...-..    +....-+++|+.+|.|++|...-.-. ...+   ...+. .
T Consensus        32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~~~v----~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~  107 (238)
T KOG2444|consen   32 LLRATSADGLVRERKVRKHKESCRSERFIDEGQRV----VTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLG  107 (238)
T ss_pred             hhccccCCcccccchhhhhhhhhhhhhhhhcceee----cccCceEEeecccceEEEecCCccchHHHhhhcccccceec
Confidence            34445678888888877544323322222222111    12223456788899999998873211 1111   11121 2


Q ss_pred             EEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEE--e-CCeEEEEEcCCC
Q 003271          686 MRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASV--S-DELVRVWSIGSG  753 (835)
Q Consensus       686 l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~I~sl~fspdg~~Lasg--s-Dg~I~IwDl~t~  753 (835)
                      +..-.++.+.++++.+|.|+.|++.-.+.+.....|. .++..+..+..+++|+..  + |..++.|++...
T Consensus       108 Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~  179 (238)
T KOG2444|consen  108 IPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI  179 (238)
T ss_pred             cccccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence            2223334577888899999999999888777776676 555555555555666555  4 666777766543

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.20  E-value=0.72  Score=50.25  Aligned_cols=201  Identities=14%  Similarity=0.158  Sum_probs=95.5

Q ss_pred             CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271          541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (835)
Q Consensus       541 ~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~Dg  619 (835)
                      .+.++..+..-..-.+....+....++..++ ++..|.|+.= .+.++. ......-.+.+..+..++||+++++++...
T Consensus        89 gG~tW~~v~l~~~lpgs~~~i~~l~~~~~~l-~~~~G~iy~T-~DgG~tW~~~~~~~~gs~~~~~r~~dG~~vavs~~G~  166 (302)
T PF14870_consen   89 GGKTWERVPLSSKLPGSPFGITALGDGSAEL-AGDRGAIYRT-TDGGKTWQAVVSETSGSINDITRSSDGRYVAVSSRGN  166 (302)
T ss_dssp             TTSS-EE----TT-SS-EEEEEEEETTEEEE-EETT--EEEE-SSTTSSEEEEE-S----EEEEEE-TTS-EEEEETTSS
T ss_pred             CCCCcEEeecCCCCCCCeeEEEEcCCCcEEE-EcCCCcEEEe-CCCCCCeeEcccCCcceeEeEEECCCCcEEEEECccc
Confidence            3445555432222223344444444443333 3444544332 222322 222344557789999999999999887766


Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE-CCCCeeeeE--e-----ecCceEEEEecC
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGSCAGV--F-----KSGATQMRFQPR  691 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD-l~s~~~~~~--~-----~~~i~~l~fsp~  691 (835)
                      ...-||--..... .........|..+.|.|++. +.+ ....|.|++=+ ....+.-..  .     .-.+..++|.++
T Consensus       167 ~~~s~~~G~~~w~-~~~r~~~~riq~~gf~~~~~-lw~-~~~Gg~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~  243 (302)
T PF14870_consen  167 FYSSWDPGQTTWQ-PHNRNSSRRIQSMGFSPDGN-LWM-LARGGQIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPP  243 (302)
T ss_dssp             EEEEE-TT-SS-E-EEE--SSS-EEEEEE-TTS--EEE-EETTTEEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSS
T ss_pred             EEEEecCCCccce-EEccCccceehhceecCCCC-EEE-EeCCcEEEEccCCCCccccccccCCcccCceeeEEEEecCC
Confidence            6677876543332 22223467899999999966 433 33688888877 222222111  1     123678899987


Q ss_pred             CCEEEEEEcCCcEEEEECCCCeEEEE---EcCCCCCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003271          692 LGRILAAAIENYISILDVETQVCRLK---LQGHKNQVHSVCWNTSGEYLASVSDELVRVW  748 (835)
Q Consensus       692 ~~~ll~~s~dg~I~IwDl~t~~~i~~---l~~h~~~I~sl~fspdg~~LasgsDg~I~Iw  748 (835)
                      +. +.+++..|.+.+ ....++.-..   ...-...++.|.|.++.+-++.|.+|.|.-|
T Consensus       244 ~~-~wa~gg~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG~~G~ll~~  301 (302)
T PF14870_consen  244 NE-IWAVGGSGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLGQDGVLLRY  301 (302)
T ss_dssp             S--EEEEESTT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE-STTEEEEE
T ss_pred             CC-EEEEeCCccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEECCCcEEEEe
Confidence            55 444555554443 3333332222   2234557889999888888888889987665

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=96.13  E-value=0.56  Score=48.18  Aligned_cols=133  Identities=13%  Similarity=0.138  Sum_probs=88.2

Q ss_pred             CCeEEEEECCCCCEEEEEECC---------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003271          598 QWITDVRFSPSLSRLATSSAD---------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~D---------g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iw  668 (835)
                      ....+-..+|+|++++-.-.|         |.++.|-....   +..+...-.--..++|+.+.+.+.++-+.+-+|.-|
T Consensus       109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~---v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~V~a~  185 (310)
T KOG4499|consen  109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQ---VELIWNCVGISNGLAWDSDAKKFYYIDSLNYEVDAY  185 (310)
T ss_pred             cccccCccCCCCceeeeeeccccccccccccEEEEeccCCC---ceeeehhccCCccccccccCcEEEEEccCceEEeee
Confidence            456667788999985433222         44555544321   222222233446788998877777777888888778


Q ss_pred             E--CCCCee-----eeEeec-------CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271          669 S--INNGSC-----AGVFKS-------GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS  733 (835)
Q Consensus       669 D--l~s~~~-----~~~~~~-------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd  733 (835)
                      |  ..+|..     +..++.       ....+++..+|+.++++-..++|..+|..+++.+..+.-....|+|+||--.
T Consensus       186 dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGk  264 (310)
T KOG4499|consen  186 DYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGK  264 (310)
T ss_pred             ecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCC
Confidence            7  555432     222221       1234556667777777778899999999999999999888999999999643

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.11  E-value=3.3  Score=46.60  Aligned_cols=193  Identities=11%  Similarity=0.080  Sum_probs=105.1

Q ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccC--CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC-
Q 003271          564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS-  640 (835)
Q Consensus       564 Spdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h--~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~-  640 (835)
                      .-|+ .++++..||.|.-.|.++++.+.....-  ...+.+-.+..+|+ |+.++.++.++++|..++.. +..+.... 
T Consensus        66 ~~dg-~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~-~W~~~~~~~  142 (370)
T COG1520          66 DGDG-TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTL-VWSRNVGGS  142 (370)
T ss_pred             eeCC-eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcE-EEEEecCCC
Confidence            3355 4445577888888898888866433222  12233333333665 77788899899999877765 33333333 


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce-E--EE--EecCCCEEEEEEc--CCcEEEEECCCCe
Q 003271          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT-Q--MR--FQPRLGRILAAAI--ENYISILDVETQV  713 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~-~--l~--fsp~~~~ll~~s~--dg~I~IwDl~t~~  713 (835)
                      -.+..-.+..+  ..++.++.++.+...|..+++....+..... .  +.  .....+.++.+..  ++.+.-+|.+++.
T Consensus       143 ~~~~~~~v~~~--~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~  220 (370)
T COG1520         143 PYYASPPVVGD--GTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT  220 (370)
T ss_pred             eEEecCcEEcC--cEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc
Confidence            11112222223  2344444689999999998888666443211 1  11  1123455666666  6678888888887


Q ss_pred             EEEEEcCC----CCCe--E-EE---EEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec
Q 003271          714 CRLKLQGH----KNQV--H-SV---CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC  764 (835)
Q Consensus       714 ~i~~l~~h----~~~I--~-sl---~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~  764 (835)
                      .....+.+    ...+  . .+   ...-++..++...++.+...|..++   +.+-.+..
T Consensus       221 ~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G---~~~W~~~~  278 (370)
T COG1520         221 LKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTG---ELIWSFPA  278 (370)
T ss_pred             EeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCC---ceEEEEec
Confidence            77664311    1111  0 00   1111233333333777888888887   44444443

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=96.07  E-value=1.8  Score=46.41  Aligned_cols=202  Identities=15%  Similarity=0.155  Sum_probs=114.3

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcC-------CCeEEEEecc-----CCCCeEEEEECCCCC------------EEE
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTE-------SFTVKSTLEE-----HTQWITDVRFSPSLS------------RLA  613 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-------t~~~i~~l~~-----h~~~V~sv~fspdg~------------~La  613 (835)
                      -+.|+|+|.+.+-++....+...+||..       ...++.++..     .....+.+.|+....            .++
T Consensus        25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi  104 (336)
T TIGR03118        25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL  104 (336)
T ss_pred             cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence            4679999999888888788999999986       1233444432     234677888875322            367


Q ss_pred             EEECCCeEEEEecCCCCc----eeEEee-cCCCCe-EEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeee--eEeecC-
Q 003271          614 TSSADRTVRVWDTENPDY----SLRTFT-GHSTTV-MSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCA--GVFKSG-  682 (835)
Q Consensus       614 tgs~Dg~I~IWDl~t~~~----~~~~~~-~h~~~V-~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~~~~-  682 (835)
                      .+++||+|.-|...-...    ....+. .....| ..+++..  .+..++++--..++|.+||-.=.+..  ..+..+ 
T Consensus       105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP~  184 (336)
T TIGR03118       105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDPA  184 (336)
T ss_pred             EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCCC
Confidence            788999999998532211    112221 112333 3455543  34555555556789999986533221  111111 


Q ss_pred             ------------------ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcC------CCCE
Q 003271          683 ------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNT------SGEY  736 (835)
Q Consensus       683 ------------------i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fsp------dg~~  736 (835)
                                        ++...-.++...-+.+..-|.|.+||.. +..+.++.  +.-..-+.|+..|      .|.+
T Consensus       185 iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~l  263 (336)
T TIGR03118       185 LPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGAL  263 (336)
T ss_pred             CCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCCe
Confidence                              0111111121222222334689999986 45555553  2233445666644      4566


Q ss_pred             EEEEe-CCeEEEEEcCCCCCcceEEEee
Q 003271          737 LASVS-DELVRVWSIGSGSKGECIHELS  763 (835)
Q Consensus       737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~  763 (835)
                      |+.-- ||+|.+||..++   ..+..+.
T Consensus       264 LVGNFGDG~InaFD~~sG---~~~g~L~  288 (336)
T TIGR03118       264 LVGNFGDGTINAYDPQSG---AQLGQLL  288 (336)
T ss_pred             EEeecCCceeEEecCCCC---ceeeeec
Confidence            66544 999999999887   4444443

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=96.02  E-value=2.5  Score=44.57  Aligned_cols=248  Identities=11%  Similarity=-0.000  Sum_probs=153.8

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe-
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-  636 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~-  636 (835)
                      -..++-.+||..-+++...+.|--.|..+++....--+....-..|..-||+...++-+.. -|.-.|-++.+.....+ 
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp  142 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP  142 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence            4567888999888888888888888999998876665666667788889998877664433 45555555444211111 


Q ss_pred             -ecCCCCeEEEEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEE
Q 003271          637 -TGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       637 -~~h~~~V~sl~fsp~g~~ll~sgs~---------Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                       ...........|.+.|. +-+++..         .+.|++|+...+       .....+|..|+|...++.-.++.|-.
T Consensus       143 ~~~a~~nlet~vfD~~G~-lWFt~q~G~yGrLdPa~~~i~vfpaPqG-------~gpyGi~atpdGsvwyaslagnaiar  214 (353)
T COG4257         143 LEHADANLETAVFDPWGN-LWFTGQIGAYGRLDPARNVISVFPAPQG-------GGPYGICATPDGSVWYASLAGNAIAR  214 (353)
T ss_pred             cccCCCcccceeeCCCcc-EEEeeccccceecCcccCceeeeccCCC-------CCCcceEECCCCcEEEEeccccceEE
Confidence             22335677888999876 5445541         123444443322       33677889999998888888888888


Q ss_pred             EECCCCeEEEEE--cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271          707 LDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       707 wDl~t~~~i~~l--~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s  783 (835)
                      .|..++......  .........+--+|.|+.-++.. .+.+..||-....  -.-..+.+....-.++.+...++.-++
T Consensus       215 idp~~~~aev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s--W~eypLPgs~arpys~rVD~~grVW~s  292 (353)
T COG4257         215 IDPFAGHAEVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS--WIEYPLPGSKARPYSMRVDRHGRVWLS  292 (353)
T ss_pred             cccccCCcceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc--ceeeeCCCCCCCcceeeeccCCcEEee
Confidence            888766322211  11123344555667788777766 7788888876542  122234444555666666666665554


Q ss_pred             EEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEe
Q 003271          784 IGCYETLELWNMTENKTLTLSAHDKLVSSLAAS  816 (835)
Q Consensus       784 gs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~s  816 (835)
                      -...+.|.-||-++.....+......+..+.+.
T Consensus       293 ea~agai~rfdpeta~ftv~p~pr~n~gn~ql~  325 (353)
T COG4257         293 EADAGAIGRFDPETARFTVLPIPRPNSGNIQLD  325 (353)
T ss_pred             ccccCceeecCcccceEEEecCCCCCCCceecc
Confidence            455567777777766655444333333334433

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.01  E-value=0.26  Score=45.07  Aligned_cols=98  Identities=21%  Similarity=0.216  Sum_probs=63.6

Q ss_pred             eEEEE---EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE
Q 003271          643 VMSLD---FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  717 (835)
Q Consensus       643 V~sl~---fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~  717 (835)
                      |++++   |..+|..-|+.|+.|..|++|+-.  +.+..+.  ..+..++-... ..++.+..+|+|-+|+-.  ..+..
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWR   76 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWR   76 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeee
Confidence            44444   445666788899999999999876  3444444  44666665555 778999999999999863  33444


Q ss_pred             EcCCCCCeEEEEEcC-C--C-CEEEEEe-CCeEE
Q 003271          718 LQGHKNQVHSVCWNT-S--G-EYLASVS-DELVR  746 (835)
Q Consensus       718 l~~h~~~I~sl~fsp-d--g-~~Lasgs-Dg~I~  746 (835)
                      ++. +..+.++++.. +  | .-|++|- +|.|-
T Consensus        77 iKS-K~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   77 IKS-KNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ecc-CCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            443 34466665543 2  2 2344444 88764

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.99  E-value=1.5  Score=49.14  Aligned_cols=119  Identities=17%  Similarity=0.198  Sum_probs=85.4

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE----EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~----i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      ..++|.++.||+|.+.||+--.|++|.+++....+.    ..+.+..+..|...+|+.+ .-+|..+..| |-+|-+...
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            456899999999999999999999999998743222    2333445567999999866 5566665555 888888776


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCe
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGS  674 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~  674 (835)
                      +..++....|+..|.-..|+++...++.+.+ ..+.+.=+-++++.
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~~  188 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAGT  188 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeece
Confidence            6667888889999999999998765554444 34444445454443

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.95  E-value=4.1  Score=46.31  Aligned_cols=146  Identities=11%  Similarity=0.065  Sum_probs=81.6

Q ss_pred             EEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcc--eEEEe
Q 003271          685 QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGE--CIHEL  762 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~--~i~~l  762 (835)
                      .+...+++..++++.....++-||--...-...-......+.++.|.+++.+++++.+|.+.+ ....+....  .+...
T Consensus       243 ~v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~-S~d~G~~~~~~~f~~~  321 (398)
T PLN00033        243 TVNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYV-SKGTGLTEEDFDFEEA  321 (398)
T ss_pred             eEEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEE-ecCCCCcccccceeec
Confidence            344556655444444333223333321110111122355788999999999998888776544 333332111  22222


Q ss_pred             ec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          763 SC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       763 ~~--~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l----~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ..  ....+..+.|.+++. +++++..|.|.+.. ..++.-..    ..-...++.+.|.++++.+++ +.+|.|.-|
T Consensus       322 ~~~~~~~~l~~v~~~~d~~-~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~-G~~G~il~~  396 (398)
T PLN00033        322 DIKSRGFGILDVGYRSKKE-AWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVL-GNDGVLLRY  396 (398)
T ss_pred             ccCCCCcceEEEEEcCCCc-EEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEE-eCCcEEEEe
Confidence            22  224588899987766 66777777666653 44544322    233456889999777665655 567887665

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.92  E-value=2.1  Score=47.93  Aligned_cols=185  Identities=15%  Similarity=0.173  Sum_probs=112.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECC----CCCE--EEEEEC-C---CeEEEEecCCCCceeEE
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLSR--LATSSA-D---RTVRVWDTENPDYSLRT  635 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp----dg~~--Latgs~-D---g~I~IWDl~t~~~~~~~  635 (835)
                      ...+|+...+++-+.+||+.. +.+..+.  .+.+..|....    +++.  |+.++. +   .+|++|.+......+..
T Consensus        67 ~kSlIigTdK~~GL~VYdL~G-k~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~  143 (381)
T PF02333_consen   67 AKSLIIGTDKKGGLYVYDLDG-KELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTD  143 (381)
T ss_dssp             GG-EEEEEETTTEEEEEETTS--EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE
T ss_pred             ccceEEEEeCCCCEEEEcCCC-cEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceE
Confidence            445777788888999999864 5555553  23333333211    3332  444443 2   47999988743323333


Q ss_pred             eec-------CCCCeEEEEEc--C-CCCcEEEEEeCCCcEEEEECC---CC----eeeeEee--cCceEEEEecCCCEEE
Q 003271          636 FTG-------HSTTVMSLDFH--P-SKEDLLCSCDNNSEIRYWSIN---NG----SCAGVFK--SGATQMRFQPRLGRIL  696 (835)
Q Consensus       636 ~~~-------h~~~V~sl~fs--p-~g~~ll~sgs~Dg~I~iwDl~---s~----~~~~~~~--~~i~~l~fsp~~~~ll  696 (835)
                      +..       .-..++.+|+.  + ++..+++....+|.+..|.+.   .+    +.++.|.  +.+..+......+.|+
T Consensus       144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~LY  223 (381)
T PF02333_consen  144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGRLY  223 (381)
T ss_dssp             -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTEEE
T ss_pred             cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCCEE
Confidence            321       12346777764  3 456677788889998888774   23    3466665  3477888898999999


Q ss_pred             EEEcCCcEEEEECCC-----CeEEEEEcC--CCCCeEEEEEc--CCC-CEEEEEe--CCeEEEEEcCCC
Q 003271          697 AAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWN--TSG-EYLASVS--DELVRVWSIGSG  753 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t-----~~~i~~l~~--h~~~I~sl~fs--pdg-~~Lasgs--Dg~I~IwDl~t~  753 (835)
                      ++-.+-.|.-|+.+.     ++.+....+  ....|..|++-  .++ .||++++  +++..||+....
T Consensus       224 vgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  224 VGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             EEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             EecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            999999999999872     233333322  34577777774  333 4677776  889999998764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.92  E-value=1.2  Score=47.43  Aligned_cols=158  Identities=12%  Similarity=0.159  Sum_probs=98.3

Q ss_pred             eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003271          593 LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (835)
Q Consensus       593 l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~  671 (835)
                      +.+-...|.++.|+|+.+.|++......-.||=..++.. ++++. ..-.....|.|..++. ++++--.+..+.++.+.
T Consensus        81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~Gdl-irtiPL~g~~DpE~Ieyig~n~-fvi~dER~~~l~~~~vd  158 (316)
T COG3204          81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDL-IRTIPLTGFSDPETIEYIGGNQ-FVIVDERDRALYLFTVD  158 (316)
T ss_pred             cccccccccceeeCCCcceEEEecCCCceEEEEecCCce-EEEecccccCChhHeEEecCCE-EEEEehhcceEEEEEEc
Confidence            345555699999999999998887777666665555554 44332 1223455677776643 55566677888888776


Q ss_pred             CCeeeeEe-------------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE---EEEEcCC-------CCCeEEE
Q 003271          672 NGSCAGVF-------------KSGATQMRFQPRLGRILAAAIENYISILDVETQVC---RLKLQGH-------KNQVHSV  728 (835)
Q Consensus       672 s~~~~~~~-------------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~---i~~l~~h-------~~~I~sl  728 (835)
                      ....+..+             ..+...++|+|.+..++++-+-+-+.||.+.....   +.....+       -..|.++
T Consensus       159 ~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl  238 (316)
T COG3204         159 ADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGL  238 (316)
T ss_pred             CCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccc
Confidence            55322211             23466799999999999999888888877653221   1111111       2346778


Q ss_pred             EEcCCCC-EEEEEe-CCeEEEEEcCC
Q 003271          729 CWNTSGE-YLASVS-DELVRVWSIGS  752 (835)
Q Consensus       729 ~fspdg~-~Lasgs-Dg~I~IwDl~t  752 (835)
                      .|++... +|+.+. ++.+.-.|...
T Consensus       239 ~~~~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         239 EFNAITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             eecCCCCcEEEEecCCceEEEEecCC
Confidence            8886544 444444 55666666554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.81  E-value=0.13  Score=62.42  Aligned_cols=101  Identities=21%  Similarity=0.271  Sum_probs=71.5

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCC-eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeE
Q 003271          566 DGKLLATGGHDKKAVLWCTESF-TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVM  644 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~-~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~  644 (835)
                      .+..++.|+..|.|-..|.... .....=..-.++|++++|+.+|+.++.|-.+|.|.+||+..++. ++.+..|..++.
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~-l~~i~e~~ap~t  176 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKI-LKVITEHGAPVT  176 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcc-eeeeeecCCccc
Confidence            3557888988899988887542 11122223457899999999999999999999999999998664 677776666655


Q ss_pred             EEEE---cCCCCcEEEEEeCCCcEEEEEC
Q 003271          645 SLDF---HPSKEDLLCSCDNNSEIRYWSI  670 (835)
Q Consensus       645 sl~f---sp~g~~ll~sgs~Dg~I~iwDl  670 (835)
                      .+-+   ..++. .+++++..|.  +|.+
T Consensus       177 ~vi~v~~t~~nS-~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  177 GVIFVGRTSQNS-KLLTSDTGGS--FWKL  202 (1206)
T ss_pred             eEEEEEEeCCCc-EEEEccCCCc--eEEE
Confidence            5443   33433 5667776665  4543

>PHA03098 kelch-like protein; Provisional

Probab=95.76  E-value=0.31  Score=57.77  Aligned_cols=157  Identities=10%  Similarity=0.055  Sum_probs=75.6

Q ss_pred             CcEEEEEeCC-----CcEEEEECCCCeeeeEe--ecC-ceEEEEecCCCEEEEEEcC------CcEEEEECCCCeEEEEE
Q 003271          653 EDLLCSCDNN-----SEIRYWSINNGSCAGVF--KSG-ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKL  718 (835)
Q Consensus       653 ~~ll~sgs~D-----g~I~iwDl~s~~~~~~~--~~~-i~~l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i~~l  718 (835)
                      +.+++.|+.+     ..+..||..+.+....-  ..+ ........++..++.|+.+      +.+..||..+.+-...-
T Consensus       343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~  422 (534)
T PHA03098        343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGS  422 (534)
T ss_pred             CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecC
Confidence            4566677654     35778888776543221  111 1111122344555555532      45888998865433211


Q ss_pred             cCC-CCCeEEEEEcCCCCEEEEEe-CC--------eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-
Q 003271          719 QGH-KNQVHSVCWNTSGEYLASVS-DE--------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-  787 (835)
Q Consensus       719 ~~h-~~~I~sl~fspdg~~Lasgs-Dg--------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-  787 (835)
                      ... ...-.+++. .++.+++.|+ ++        .+.+||..+..- ..+..+.........+.+  ++..+++|+.+ 
T Consensus       423 ~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W-~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~  498 (534)
T PHA03098        423 PLPISHYGGCAIY-HDGKIYVIGGISYIDNIKVYNIVESYNPVTNKW-TELSSLNFPRINASLCIF--NNKIYVVGGDKY  498 (534)
T ss_pred             CCCccccCceEEE-ECCEEEEECCccCCCCCcccceEEEecCCCCce-eeCCCCCcccccceEEEE--CCEEEEEcCCcC
Confidence            100 111112222 3455555554 21        388888877521 111111111111222222  56666666554 


Q ss_pred             ----CeEEEEEcCCCcEEEeccCCCCeeEE
Q 003271          788 ----ETLELWNMTENKTLTLSAHDKLVSSL  813 (835)
Q Consensus       788 ----g~I~IwDl~~~~~~~l~~h~~~V~~l  813 (835)
                          +.|.+||..+.....+......+..+
T Consensus       499 ~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~  528 (534)
T PHA03098        499 EYYINEIEVYDDKTNTWTLFCKFPKVIGSL  528 (534)
T ss_pred             CcccceeEEEeCCCCEEEecCCCcccccce
Confidence                47899999888776554443333333

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=95.72  E-value=0.092  Score=64.03  Aligned_cols=142  Identities=13%  Similarity=0.058  Sum_probs=93.2

Q ss_pred             CeEEEEECCCCCEEEE--EECCCeEEEEecCCCCcee----E------EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          599 WITDVRFSPSLSRLAT--SSADRTVRVWDTENPDYSL----R------TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       599 ~V~sv~fspdg~~Lat--gs~Dg~I~IWDl~t~~~~~----~------~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      .|..+...+|+...++  .+.+-.|.+||+++-....    .      ........+.++.|.|.-....+.+..|+.|+
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~  181 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLR  181 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchh
Confidence            4555555667555443  3445589999987532211    1      11122345678889987666667788899999


Q ss_pred             EEECCCCee-eeE--eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCCCEEEE
Q 003271          667 YWSINNGSC-AGV--FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLAS  739 (835)
Q Consensus       667 iwDl~s~~~-~~~--~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~fspdg~~Las  739 (835)
                      +..+..... +..  +....++++|+|.|..+++|-..|++.-|...-. ....+.+    ....|.||+|...-.++++
T Consensus       182 V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le-ik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv  260 (1405)
T KOG3630|consen  182 VKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE-IKSEIPEPPVEENYRVLSVTWLSTQEFLVV  260 (1405)
T ss_pred             hhhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccc-eeecccCCCcCCCcceeEEEEecceeEEEE
Confidence            988764322 222  3345889999999999999999999998876432 2222221    2468999999888888776


Q ss_pred             Ee
Q 003271          740 VS  741 (835)
Q Consensus       740 gs  741 (835)
                      -+
T Consensus       261 y~  262 (1405)
T KOG3630|consen  261 YG  262 (1405)
T ss_pred             ec
Confidence            54

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=95.67  E-value=4.3  Score=50.34  Aligned_cols=177  Identities=16%  Similarity=0.197  Sum_probs=100.6

Q ss_pred             cCCCCeEEEEEC---C----CCCEEEEEECCCeEEEEecC------CCC--------ceeEEeec---CCCCeEEEEEcC
Q 003271          595 EHTQWITDVRFS---P----SLSRLATSSADRTVRVWDTE------NPD--------YSLRTFTG---HSTTVMSLDFHP  650 (835)
Q Consensus       595 ~h~~~V~sv~fs---p----dg~~Latgs~Dg~I~IWDl~------t~~--------~~~~~~~~---h~~~V~sl~fsp  650 (835)
                      ....+|..|+|.   .    ..++|++= ....+.|+...      ...        .++..+..   ...+...++|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788888887   2    12355544 45566777611      111        11222221   234677888888


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE
Q 003271          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW  730 (835)
Q Consensus       651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f  730 (835)
                      ....-|+..+..|...||++.......   ..          ..-+.....|.| ++|...          ......++|
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~---~~----------~~~~~~~~~gsi-~~d~~e----------~s~w~rI~W  211 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRK---SS----------NLRLSRNISGSI-IFDPEE----------LSNWKRILW  211 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccC---Cc----------ceeeccCCCccc-cCCCcc----------cCcceeeEe
Confidence            777788888888999999982211110   00          111111122333 233221          145567899


Q ss_pred             cCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          731 NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       731 spdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      .++...|+.++...+.++|+.+......+ ........|..+.-++.....+..-....|..+++..
T Consensus       212 ~~~~~~lLv~~r~~l~~~d~~~~~~~~~l-~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  212 VSDSNRLLVCNRSKLMLIDFESNWQTEYL-VTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             cCCCCEEEEEcCCceEEEECCCCCccchh-ccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            99988999999889999999887432222 2233456788888888733222222335676777766

These proteins are found in fungi.

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=95.64  E-value=2  Score=45.33  Aligned_cols=211  Identities=10%  Similarity=0.047  Sum_probs=132.6

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 003271          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~  678 (835)
                      .-..|+-.+||...+++...+.|--.|-.+++. ...-.+....-..|..-|++...|+-.  ..-|.-+|-++.+..+.
T Consensus        63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev-~~ypLg~Ga~Phgiv~gpdg~~Witd~--~~aI~R~dpkt~evt~f  139 (353)
T COG4257          63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEV-ETYPLGSGASPHGIVVGPDGSAWITDT--GLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             CccccccCCCCceEEecCccccceecCCCCCce-EEEecCCCCCCceEEECCCCCeeEecC--cceeEEecCcccceEEe
Confidence            345677888999999988888888888888774 344445556677788889887555322  22566677766554321


Q ss_pred             -e-----ecCceEEEEecCCCEEEEEEcC---------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C
Q 003271          679 -F-----KSGATQMRFQPRLGRILAAAIE---------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D  742 (835)
Q Consensus       679 -~-----~~~i~~l~fsp~~~~ll~~s~d---------g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D  742 (835)
                       +     ........|.+.|...+++...         +.|++|+..          ....-+.||..|+|...++.- +
T Consensus       140 ~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvwyaslag  209 (353)
T COG4257         140 PLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVWYASLAG  209 (353)
T ss_pred             ecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEEEEeccc
Confidence             1     1336678899998888887632         234444433          234456788899999887766 7


Q ss_pred             CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE--EeccCCCCeeEEEEeCCCC
Q 003271          743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--TLSAHDKLVSSLAASTVNG  820 (835)
Q Consensus       743 g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~  820 (835)
                      +.|-..|..++.. +.+..-.........+.-+|.++.-++....+.+..||-......  .+.+....-.++.+...++
T Consensus       210 naiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~gr  288 (353)
T COG4257         210 NAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGR  288 (353)
T ss_pred             cceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCCCCCCCcceeeeccCCc
Confidence            7777777766521 222222222334455666777877777777778888887665544  4444444455555555454


Q ss_pred             EEE
Q 003271          821 MVA  823 (835)
Q Consensus       821 ~La  823 (835)
                      ...
T Consensus       289 VW~  291 (353)
T COG4257         289 VWL  291 (353)
T ss_pred             EEe
Confidence            433

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.63  E-value=0.33  Score=55.94  Aligned_cols=172  Identities=12%  Similarity=0.172  Sum_probs=105.3

Q ss_pred             CCeEEEEEcCCCCcEEEEEe--CCCcEEEEECCCCeeeeEeecCceEEEEecCC----CEEEEEEcCCcEEEEECCC---
Q 003271          641 TTVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNGSCAGVFKSGATQMRFQPRL----GRILAAAIENYISILDVET---  711 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sgs--~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~----~~ll~~s~dg~I~IwDl~t---  711 (835)
                      .+|..++|. ||+.++.+.-  .+|.+++=|..   .+..| .++..+.|.|-+    ..+++.-....|.||-+..   
T Consensus        20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~---viGqF-EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~   94 (671)
T PF15390_consen   20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK---VIGQF-EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTT   94 (671)
T ss_pred             ccccceEec-CCCEEEEEeeeeeCCccccCCcc---Eeecc-ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCcc
Confidence            368888887 4566665543  34444433322   12222 457788888863    4678888889999998752   


Q ss_pred             --CeEEEEEcC-C--CCC--eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271          712 --QVCRLKLQG-H--KNQ--VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       712 --~~~i~~l~~-h--~~~--I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s  783 (835)
                        .+.+..-.. .  .-+  -..+.|+|...+|++-. .+.-.+++++.... .....+ ...+-|.|.+|.+||..|++
T Consensus        95 e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~s-rVkaDi-~~~G~IhCACWT~DG~RLVV  172 (671)
T PF15390_consen   95 ERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSS-RVKADI-KTSGLIHCACWTKDGQRLVV  172 (671)
T ss_pred             ccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCc-eEEEec-cCCceEEEEEecCcCCEEEE
Confidence              222221111 1  111  23578999999998877 44445667665432 222233 45778999999999998888


Q ss_pred             EEcCC-eEEEEEcCCCcEE-----EeccCCCCeeEEEEeCCC
Q 003271          784 IGCYE-TLELWNMTENKTL-----TLSAHDKLVSSLAASTVN  819 (835)
Q Consensus       784 gs~dg-~I~IwDl~~~~~~-----~l~~h~~~V~~la~spdg  819 (835)
                      +-... .-+|||-......     .+..-.+.|.+|.-.-|.
T Consensus       173 AvGSsLHSyiWd~~qKtL~~CsfcPVFdv~~~Icsi~AT~ds  214 (671)
T PF15390_consen  173 AVGSSLHSYIWDSAQKTLHRCSFCPVFDVGGYICSIEATVDS  214 (671)
T ss_pred             EeCCeEEEEEecCchhhhhhCCcceeecCCCceEEEEEeccc
Confidence            77665 7889986544322     344556677777654433

>PHA03098 kelch-like protein; Provisional

Probab=95.62  E-value=0.44  Score=56.44  Aligned_cols=183  Identities=9%  Similarity=0.007  Sum_probs=87.9

Q ss_pred             CCCEEEEEeCCC------eEEEEEcCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCCce
Q 003271          566 DGKLLATGGHDK------KAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYS  632 (835)
Q Consensus       566 dg~~Lasgs~Dg------~I~VWd~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~~~  632 (835)
                      ++.+++.||.++      .+..||..+.+....-  .........+.+  ++.+++.|+.+     ..+.+||..+....
T Consensus       294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF--NNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE--CCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            556677776542      5778888775543211  111112222222  56777888765     35778888776532


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEcC--
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAIE--  701 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~d--  701 (835)
                      ...-..+...-.+++..  ++.+++.|+.+      ..+..||+.+.+....-.  .+ ....+...++..+++|+.+  
T Consensus       372 ~~~~lp~~r~~~~~~~~--~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  449 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNV--NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDGKIYVIGGISYI  449 (534)
T ss_pred             eCCCcCcCCccceEEEE--CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccCceEEEECCEEEEECCccCC
Confidence            11100111111122222  24566666632      468889988765443221  11 1111222344445555432  


Q ss_pred             ------CcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003271          702 ------NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG  753 (835)
Q Consensus       702 ------g~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~  753 (835)
                            ..+.+||..+.+-...-. .....-.+++. -++++++.|+ +     +.|.+||..+.
T Consensus       450 ~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~v~~yd~~~~  513 (534)
T PHA03098        450 DNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCI-FNNKIYVVGGDKYEYYINEIEVYDDKTN  513 (534)
T ss_pred             CCCcccceEEEecCCCCceeeCCCCCcccccceEEE-ECCEEEEEcCCcCCcccceeEEEeCCCC
Confidence                  238889988754332111 01111112222 2566666665 2     36777887664

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.47  E-value=0.028  Score=57.36  Aligned_cols=100  Identities=17%  Similarity=0.123  Sum_probs=65.7

Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc-eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-eccCC-CC
Q 003271          734 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK-FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAHD-KL  809 (835)
Q Consensus       734 g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~-V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l~~h~-~~  809 (835)
                      +.-+++|+ +|.|++|...-..  .....+...... .+.+.-..++.+.++++.++.|+.|++.-++.+. ...|. ..
T Consensus        70 ~~~~~vG~~dg~v~~~n~n~~g--~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~  147 (238)
T KOG2444|consen   70 SAKLMVGTSDGAVYVFNWNLEG--AHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFES  147 (238)
T ss_pred             CceEEeecccceEEEecCCccc--hHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCC
Confidence            34466666 9999999886321  111111111122 2223334455688899999999999999999884 44555 56


Q ss_pred             eeEEEEeCCCCEEEEE--ECCCcEEEeC
Q 003271          810 VSSLAASTVNGMVASA--SHDKCVKIWK  835 (835)
Q Consensus       810 V~~la~spdg~~LaSg--s~DG~V~IWd  835 (835)
                      +..+..+..+++|+.+  |.|..++.|+
T Consensus       148 ~e~~ivv~sd~~i~~a~~S~d~~~k~W~  175 (238)
T KOG2444|consen  148 GEELIVVGSDEFLKIADTSHDRVLKKWN  175 (238)
T ss_pred             cceeEEecCCceEEeeccccchhhhhcc
Confidence            6667777777888888  8888888886

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=95.36  E-value=6.3  Score=44.35  Aligned_cols=140  Identities=12%  Similarity=0.146  Sum_probs=78.5

Q ss_pred             CCEEEEEEeCCCCEEEEEe-----------CCC-eEEEEEcCC--Ce--EEEEeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271          556 SKVESCHFSPDGKLLATGG-----------HDK-KAVLWCTES--FT--VKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs-----------~Dg-~I~VWd~~t--~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg  619 (835)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  ++  ....+...-.....++|.+++ + ++++.+.
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-l-yV~~~~~   91 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-V-YVATPPD   91 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-E-EEeCCCe
Confidence            3467899999999877642           223 777776432  32  233443334456889999888 4 4444554


Q ss_pred             eEEEEecCCC-----C--ceeEEeec----CCCCeEEEEEcCCCCcEEEEEeC------------------CCcEEEEEC
Q 003271          620 TVRVWDTENP-----D--YSLRTFTG----HSTTVMSLDFHPSKEDLLCSCDN------------------NSEIRYWSI  670 (835)
Q Consensus       620 ~I~IWDl~t~-----~--~~~~~~~~----h~~~V~sl~fsp~g~~ll~sgs~------------------Dg~I~iwDl  670 (835)
                      ..++.|.+..     +  ..+..+..    +......+.|.|+|..++..++.                  .|.|..++.
T Consensus        92 i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~p  171 (367)
T TIGR02604        92 ILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNP  171 (367)
T ss_pred             EEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEec
Confidence            3344455321     1  11111222    12347789999998755544421                  144666666


Q ss_pred             CCCeeeeEeecC---ceEEEEecCCCEEEEE
Q 003271          671 NNGSCAGVFKSG---ATQMRFQPRLGRILAA  698 (835)
Q Consensus       671 ~s~~~~~~~~~~---i~~l~fsp~~~~ll~~  698 (835)
                      ..++.. .+..+   ...++|++++..+++-
T Consensus       172 dg~~~e-~~a~G~rnp~Gl~~d~~G~l~~td  201 (367)
T TIGR02604       172 DGGKLR-VVAHGFQNPYGHSVDSWGDVFFCD  201 (367)
T ss_pred             CCCeEE-EEecCcCCCccceECCCCCEEEEc
Confidence            654432 23322   4578999987766543

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=95.30  E-value=3.6  Score=46.86  Aligned_cols=71  Identities=13%  Similarity=0.211  Sum_probs=47.0

Q ss_pred             ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEE--EEcCC----------------CCEEEEEe--C
Q 003271          683 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSV--CWNTS----------------GEYLASVS--D  742 (835)
Q Consensus       683 i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl--~fspd----------------g~~Lasgs--D  742 (835)
                      +.+++.+|.+.+.++...-|.|.++|+.++..++.++|-.+.=..-  .....                ..+|+.-.  -
T Consensus       310 ~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyaprR  389 (415)
T PF14655_consen  310 GESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPRR  389 (415)
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEeccC
Confidence            6678899997766666556999999999998888777643321110  00111                12333333  7


Q ss_pred             CeEEEEEcCCC
Q 003271          743 ELVRVWSIGSG  753 (835)
Q Consensus       743 g~I~IwDl~t~  753 (835)
                      |.|.||+++++
T Consensus       390 g~lEvW~~~~g  400 (415)
T PF14655_consen  390 GILEVWSMRQG  400 (415)
T ss_pred             CeEEEEecCCC
Confidence            89999999887

>PLN02153 epithiospecifier protein

Probab=95.30  E-value=1.4  Score=48.85  Aligned_cols=173  Identities=8%  Similarity=-0.017  Sum_probs=80.5

Q ss_pred             CcEEEEEeCC-----CcEEEEECCCCeeeeEee-------cC-ceEEEEecCCCEEEEEEcC-----------CcEEEEE
Q 003271          653 EDLLCSCDNN-----SEIRYWSINNGSCAGVFK-------SG-ATQMRFQPRLGRILAAAIE-----------NYISILD  708 (835)
Q Consensus       653 ~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~-------~~-i~~l~fsp~~~~ll~~s~d-----------g~I~IwD  708 (835)
                      ..+++.|+.+     ..+.+||+.+.+....-.       .. ....+...++..++.|+.+           ..|.+||
T Consensus        86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd  165 (341)
T PLN02153         86 TKLYIFGGRDEKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYN  165 (341)
T ss_pred             CEEEEECCCCCCCccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEE
Confidence            4466666643     357889988765432211       11 1112223344555555543           2477888


Q ss_pred             CCCCeEEEEEcCC-----CCCeEEEEEcCCCCEEEEEe-C-------------CeEEEEEcCCCCCcceEEEee-cCCC-
Q 003271          709 VETQVCRLKLQGH-----KNQVHSVCWNTSGEYLASVS-D-------------ELVRVWSIGSGSKGECIHELS-CTGN-  767 (835)
Q Consensus       709 l~t~~~i~~l~~h-----~~~I~sl~fspdg~~Lasgs-D-------------g~I~IwDl~t~~~~~~i~~l~-~~~~-  767 (835)
                      .++.+-.. +...     ...-.+++. -++++++.++ +             +.|.+||+.+..- ..+.... .... 
T Consensus       166 ~~~~~W~~-l~~~~~~~~~r~~~~~~~-~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W-~~~~~~g~~P~~r  242 (341)
T PLN02153        166 IADGKWVQ-LPDPGENFEKRGGAGFAV-VQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKW-TEVETTGAKPSAR  242 (341)
T ss_pred             CCCCeEee-CCCCCCCCCCCCcceEEE-ECCeEEEEeccccccccCCccceecCceEEEEcCCCcE-EeccccCCCCCCc
Confidence            87654322 1111     111112222 2455544433 2             3588888877521 1111110 0111 


Q ss_pred             ceEEEEEeCCCCEEEEEEcC--------------CeEEEEEcCCCcEEEeccC------CCC--eeEEEEeCCCCEEEEE
Q 003271          768 KFHSCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTLSAH------DKL--VSSLAASTVNGMVASA  825 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~l~~h------~~~--V~~la~spdg~~LaSg  825 (835)
                      ...+++ .-++..+++|+..              ..|+.||..+.....+...      ...  ..++.+..++++++.|
T Consensus       243 ~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v~~~~~~~~~g  321 (341)
T PLN02153        243 SVFAHA-VVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATVYGKNGLLMHG  321 (341)
T ss_pred             ceeeeE-EECCEEEEECcccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCccccccccccCCcceEEEEc
Confidence            112222 2345666666641              2688899887776544311      111  1233344445677777


Q ss_pred             ECCC
Q 003271          826 SHDK  829 (835)
Q Consensus       826 s~DG  829 (835)
                      +.++
T Consensus       322 G~~~  325 (341)
T PLN02153        322 GKLP  325 (341)
T ss_pred             CcCC
Confidence            7643

>PRK13684 Ycf48-like protein; Provisional

Probab=95.28  E-value=2  Score=47.71  Aligned_cols=148  Identities=11%  Similarity=0.054  Sum_probs=85.4

Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee
Q 003271          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC  675 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~  675 (835)
                      ...+.++.+.+++.+++++ ..|.+..- .+.+.... .........++++.+.+++. +++.+ ..|.+++=..+.+..
T Consensus       172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s-~~~gg~tW~~~~~~~~~~l~~i~~~~~g~-~~~vg-~~G~~~~~s~d~G~s  247 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVS-SRGNFYST-WEPGQTAWTPHQRNSSRRLQSMGFQPDGN-LWMLA-RGGQIRFNDPDDLES  247 (334)
T ss_pred             cceEEEEEECCCCeEEEEe-CCceEEEE-cCCCCCeEEEeeCCCcccceeeeEcCCCC-EEEEe-cCCEEEEccCCCCCc
Confidence            4578999999988766655 45544432 22221112 22233446789999999876 44444 457665333444433


Q ss_pred             eeEee-------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE---cCCCCCeEEEEEcCCCCEEEEEeCCeE
Q 003271          676 AGVFK-------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELV  745 (835)
Q Consensus       676 ~~~~~-------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~~I~sl~fspdg~~LasgsDg~I  745 (835)
                      -....       ..+..+.+.+++. +++++.+|.|.. ....++.-...   ..-...+..+.|..+++.+++|..|.|
T Consensus       248 W~~~~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~G~i  325 (334)
T PRK13684        248 WSKPIIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQRGVL  325 (334)
T ss_pred             cccccCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCCceE
Confidence            22111       2356778888655 555666675553 33333322222   222346788888888888888889988


Q ss_pred             EEEEc
Q 003271          746 RVWSI  750 (835)
Q Consensus       746 ~IwDl  750 (835)
                      ..|+-
T Consensus       326 l~~~~  330 (334)
T PRK13684        326 LRYVG  330 (334)
T ss_pred             EEecC
Confidence            87763

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.21  E-value=0.0083  Score=70.85  Aligned_cols=171  Identities=11%  Similarity=0.075  Sum_probs=97.5

Q ss_pred             EecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcC--CCeEE-----EEeccCCCCeEEEEECC---CCCEEEEEECC
Q 003271          550 LIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE--SFTVK-----STLEEHTQWITDVRFSP---SLSRLATSSAD  618 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~--t~~~i-----~~l~~h~~~V~sv~fsp---dg~~Latgs~D  618 (835)
                      .+++-.+.|-.+.|-. +...++  -.-|.+.||+++  .|++.     +........+.-|.|+|   +..++..+-.+
T Consensus       127 l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~  204 (1283)
T KOG1916|consen  127 LAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKG  204 (1283)
T ss_pred             HHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCC
Confidence            3456677777777744 212222  223678899875  34332     22223334455566665   56677788888


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEE
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAA  698 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~  698 (835)
                      ++|++.+++...  ...+.+|...+..++|...|-..+.+                             ++|||..++++
T Consensus       205 ~~i~lL~~~ra~--~~l~rsHs~~~~d~a~~~~g~~~l~~-----------------------------lSpDGtv~a~a  253 (1283)
T KOG1916|consen  205 GEIRLLNINRAL--RSLFRSHSQRVTDMAFFAEGVLKLAS-----------------------------LSPDGTVFAWA  253 (1283)
T ss_pred             CceeEeeechHH--HHHHHhcCCCcccHHHHhhchhhhee-----------------------------eCCCCcEEEEe
Confidence            999998887643  35566688888888877665433433                             34555555555


Q ss_pred             EcCCcEEEE-----ECCCCeEEEEEcCCC-CCeEEEEEcCC---------CCEEEEEe--CCeEEEEEcCCC
Q 003271          699 AIENYISIL-----DVETQVCRLKLQGHK-NQVHSVCWNTS---------GEYLASVS--DELVRVWSIGSG  753 (835)
Q Consensus       699 s~dg~I~Iw-----Dl~t~~~i~~l~~h~-~~I~sl~fspd---------g~~Lasgs--Dg~I~IwDl~t~  753 (835)
                      +.||.+.+|     +....+|.+..+.|. .+-.|..|+..         -.++++++  +..+++|.....
T Consensus       254 ~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w  325 (1283)
T KOG1916|consen  254 ISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPW  325 (1283)
T ss_pred             ecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccch
Confidence            555554444     334445555666666 33333333221         12455555  558888876554

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.11  E-value=0.069  Score=64.83  Aligned_cols=95  Identities=16%  Similarity=0.166  Sum_probs=67.7

Q ss_pred             CCEEEEEEcCCcEEEEECCCCeE-EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc-
Q 003271          692 LGRILAAAIENYISILDVETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK-  768 (835)
Q Consensus       692 ~~~ll~~s~dg~I~IwDl~t~~~-i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~-  768 (835)
                      +..+++++..|.|..+|+...-. ...-..-.++|++++|+.+|.+++.|- +|.|.+||+..+   +.++.+..+..+ 
T Consensus        99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen   99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---KILKVITEHGAPV  175 (1206)
T ss_pred             eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---cceeeeeecCCcc
Confidence            45677788888888888876421 122222457899999999999999998 999999999988   455555555544 


Q ss_pred             --eEEEEEeCCCCEEEEEEcCCe
Q 003271          769 --FHSCVFHPTFPSLLVIGCYET  789 (835)
Q Consensus       769 --V~sv~fspdg~~L~sgs~dg~  789 (835)
                        |..+.+..++..++++...|.
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs  198 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS  198 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc
Confidence              444455566666777777775

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.06  E-value=4.1  Score=43.35  Aligned_cols=138  Identities=17%  Similarity=0.174  Sum_probs=86.2

Q ss_pred             CeEEEEECCCCCEEEEEE---CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE-CCCCe
Q 003271          599 WITDVRFSPSLSRLATSS---ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS-INNGS  674 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs---~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD-l~s~~  674 (835)
                      .+.+.++++++..++...   ....++++......  ...+.  ...+..-.|++++. +.+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~--~~~~~--g~~l~~PS~d~~g~-~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPV--RPVLT--GGSLTRPSWDPDGW-VWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcc--eeecc--CCccccccccCCCC-EEEEEcCCCceEEEEecCCCc
Confidence            688999999999877665   23355555544322  22222  23678888999954 555555555666663 33332


Q ss_pred             eee-Ee-----ecCceEEEEecCCCEEEEEEc---CCcEEEEECC---CC------eEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          675 CAG-VF-----KSGATQMRFQPRLGRILAAAI---ENYISILDVE---TQ------VCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       675 ~~~-~~-----~~~i~~l~fsp~~~~ll~~s~---dg~I~IwDl~---t~------~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                      ... ..     ...|..++++|+|..++....   ++.|.+--+.   .+      ..+.........+..+.|.+++.+
T Consensus       100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L  179 (253)
T PF10647_consen  100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL  179 (253)
T ss_pred             ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence            211 11     126899999999999888773   4667766543   22      111122233568899999999998


Q ss_pred             EEEEe
Q 003271          737 LASVS  741 (835)
Q Consensus       737 Lasgs  741 (835)
                      ++.+.
T Consensus       180 ~V~~~  184 (253)
T PF10647_consen  180 VVLGR  184 (253)
T ss_pred             EEEeC
Confidence            88877

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.80  E-value=5.5  Score=48.71  Aligned_cols=93  Identities=14%  Similarity=0.181  Sum_probs=51.5

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~  677 (835)
                      -.|..|.++++|++|+..+..| |.|-.+.........+.+....|.|=.+.-+ ..++ ....                
T Consensus        85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~-~~~~-~~~~----------------  145 (717)
T PF10168_consen   85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVD-ERFF-TSNS----------------  145 (717)
T ss_pred             eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEec-hhhc-cCCC----------------
Confidence            3688899999999999988866 4554443211001122222333333333222 2122 1110                


Q ss_pred             EeecCceEEEEecC---CCEEEEEEcCCcEEEEECCC
Q 003271          678 VFKSGATQMRFQPR---LGRILAAAIENYISILDVET  711 (835)
Q Consensus       678 ~~~~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t  711 (835)
                        ...+..+.|+|.   +.+|++-+.|+.+++||+..
T Consensus       146 --~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  146 --SLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             --CceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence              123456677776   46777888888888888764

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=94.69  E-value=0.85  Score=51.34  Aligned_cols=105  Identities=10%  Similarity=0.026  Sum_probs=60.4

Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCeEEEE-EcCCCC----CcceE-EEeecC----CCceEEEEEeCCCCEEEEEEcC----
Q 003271          722 KNQVHSVCWNTSGEYLASVSDELVRVW-SIGSGS----KGECI-HELSCT----GNKFHSCVFHPTFPSLLVIGCY----  787 (835)
Q Consensus       722 ~~~I~sl~fspdg~~LasgsDg~I~Iw-Dl~t~~----~~~~i-~~l~~~----~~~V~sv~fspdg~~L~sgs~d----  787 (835)
                      ......+++.++| +++ +....|..| |.....    ..+.+ ..+...    ......++|.|+|.+.++.+..    
T Consensus        71 l~~p~Gi~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~  148 (367)
T TIGR02604        71 LSMVTGLAVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK  148 (367)
T ss_pred             CCCccceeEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence            3456788998888 444 443344444 543221    11222 223221    3447789999999866654421    


Q ss_pred             ---------------CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271          788 ---------------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       788 ---------------g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D  828 (835)
                                     +.|.-+|..+++...+...-.....++|+++|.++++-..+
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~  204 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDNDD  204 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEccCC
Confidence                           35666666666554433333446789999999887765433

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.57  E-value=1.2  Score=53.10  Aligned_cols=126  Identities=11%  Similarity=0.119  Sum_probs=82.8

Q ss_pred             ceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-cCCCCeEEEEEC--CCCCEEEEEECCC
Q 003271          543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFS--PSLSRLATSSADR  619 (835)
Q Consensus       543 ~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fs--pdg~~Latgs~Dg  619 (835)
                      ..+.....+...-..+.-+.-|.-++..++-+....+.|||...+.....-. ...+.|.++.|.  |++..+++.+..+
T Consensus        17 ~~w~~t~~~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~   96 (631)
T PF12234_consen   17 IEWLLTSTFETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPH   96 (631)
T ss_pred             EEEEEEEEEecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCc
Confidence            3444555555555666667666666665555556689999999877553332 356789999995  5788999999999


Q ss_pred             eEEEEecC-----CCC---ceeEE--eecCC-CCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003271          620 TVRVWDTE-----NPD---YSLRT--FTGHS-TTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (835)
Q Consensus       620 ~I~IWDl~-----t~~---~~~~~--~~~h~-~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~  671 (835)
                      .|.+|.-.     ...   ..++.  +..|+ .+|.+..|.++|. +++++  ++.+.|+|-.
T Consensus        97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~-LvV~s--GNqlfv~dk~  156 (631)
T PF12234_consen   97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGT-LVVGS--GNQLFVFDKW  156 (631)
T ss_pred             EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCe-EEEEe--CCEEEEECCC
Confidence            99998532     111   11221  23333 5799999999975 43333  4578888754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=94.56  E-value=3  Score=51.36  Aligned_cols=177  Identities=11%  Similarity=0.129  Sum_probs=98.4

Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEeecCc-----------eEEEEe----------------cCCCEEEEEEcCCcEEEE
Q 003271          655 LLCSCDNNSEIRYWSINNGSCAGVFKSGA-----------TQMRFQ----------------PRLGRILAAAIENYISIL  707 (835)
Q Consensus       655 ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i-----------~~l~fs----------------p~~~~ll~~s~dg~I~Iw  707 (835)
                      .++.|+.++.|.-.|..+++.+..+....           ..+.+.                ..++.+++++.|+.|.-+
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            34455556777777777777665554211           111111                234688999999999999


Q ss_pred             ECCCCeEEEEEcCCCCCeE-------------EEEEcC---CCCEEEEEe----------CCeEEEEEcCCCCCcceEEE
Q 003271          708 DVETQVCRLKLQGHKNQVH-------------SVCWNT---SGEYLASVS----------DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       708 Dl~t~~~i~~l~~h~~~I~-------------sl~fsp---dg~~Lasgs----------Dg~I~IwDl~t~~~~~~i~~  761 (835)
                      |.++++.+..+.. .+.|.             .+.-.|   ++..++.++          +|.|+-||.++++   .+-.
T Consensus       276 DA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGk---l~W~  351 (764)
T TIGR03074       276 DADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGA---LVWA  351 (764)
T ss_pred             ECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCc---EeeE
Confidence            9999998877642 22110             111111   344444322          4789999999984   3333


Q ss_pred             eec------------------CCCceEEEEEeCCCCEEEEEEc------------------CCeEEEEEcCCCcEE-Eec
Q 003271          762 LSC------------------TGNKFHSCVFHPTFPSLLVIGC------------------YETLELWNMTENKTL-TLS  804 (835)
Q Consensus       762 l~~------------------~~~~V~sv~fspdg~~L~sgs~------------------dg~I~IwDl~~~~~~-~l~  804 (835)
                      +..                  ..+.-...++++....++....                  .+.|.-.|.++++.. .+.
T Consensus       352 ~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q  431 (764)
T TIGR03074       352 WDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQ  431 (764)
T ss_pred             EecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEec
Confidence            221                  0011123455555555554321                  246777788888877 222


Q ss_pred             --cCCC-------CeeEEEEeC-CCC---EEEEEECCCcEEEeC
Q 003271          805 --AHDK-------LVSSLAAST-VNG---MVASASHDKCVKIWK  835 (835)
Q Consensus       805 --~h~~-------~V~~la~sp-dg~---~LaSgs~DG~V~IWd  835 (835)
                        .|+-       ...-+.+.. +|+   .|+.++.+|.+++.|
T Consensus       432 ~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlD  475 (764)
T TIGR03074       432 TVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLD  475 (764)
T ss_pred             ccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEE
Confidence              2311       111122222 553   788899999988875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=94.55  E-value=8.8  Score=41.97  Aligned_cols=231  Identities=14%  Similarity=0.011  Sum_probs=113.5

Q ss_pred             CCCEEEEEeCCCeEEEEEcCC--CeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCc-----------
Q 003271          566 DGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDY-----------  631 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t--~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~-----------  631 (835)
                      ++++|+.|+.+|...+ ++..  .+..+.+  +...|+++...+.-+.|++-+ ....++++++..-..           
T Consensus        12 ~~~~lL~GTe~Gly~~-~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~   88 (302)
T smart00036       12 DGKWLLVGTEEGLYVL-NISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLV   88 (302)
T ss_pred             CCcEEEEEeCCceEEE-EcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCcccc
Confidence            4468999998885544 4554  3444444  566899999998877666654 334599999842221           


Q ss_pred             ---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEe---e----cCceEEEEecC--CCEE
Q 003271          632 ---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVF---K----SGATQMRFQPR--LGRI  695 (835)
Q Consensus       632 ---~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~---~----~~i~~l~fsp~--~~~l  695 (835)
                         .......|......+.+......+++++.....|.++.....    ...+.+   .    .....+..++.  ...+
T Consensus        89 ~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~l  168 (302)
T smart00036       89 IRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGI  168 (302)
T ss_pred             ccccceEeCCcCCceEEEEEEcCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEE
Confidence               001122343333333333222223334444566666544322    112211   0    11222222322  4567


Q ss_pred             EEEEcCCcEEEEECCC--CeEEE-----EEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCcceEEEeecCCC
Q 003271          696 LAAAIENYISILDVET--QVCRL-----KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGN  767 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t--~~~i~-----~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t-~~~~~~i~~l~~~~~  767 (835)
                      ++|+..+...++++..  .....     ..........++..-+++.+|+ +-|....+.|... .........+   ..
T Consensus       169 cvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Ll-c~~~~~v~Vn~~G~~~~r~~~l~w---~~  244 (302)
T smart00036      169 CIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLL-CYDEFGVFVNLYGKRRSRNPILHW---EF  244 (302)
T ss_pred             EEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEE-EECcEEEEEeCCCCccccceEEEc---CC
Confidence            7777653444444432  11000     0111110233344444555554 4455455555543 1111111122   33


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccC
Q 003271          768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH  806 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h  806 (835)
                      .+.++++.  .++|++... ..|.|+++.+++.+....+
T Consensus       245 ~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      245 MPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD  280 (302)
T ss_pred             cccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence            45566776  356776654 4599999999988754443

Unpublished observations.

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=94.52  E-value=8  Score=41.35  Aligned_cols=226  Identities=12%  Similarity=0.041  Sum_probs=123.3

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCC---eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~---~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      -.++..  .|++..++..|.-+.+.|+.+.   .+...+.......+.++.+  |++-+.+..|+-+.|-|+.++..++.
T Consensus       131 aygv~v--sGn~aYVadlddgfLivdvsdpssP~lagrya~~~~d~~~v~IS--Gn~AYvA~~d~GL~ivDVSnp~sPvl  206 (370)
T COG5276         131 AYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--GNYAYVAWRDGGLTIVDVSNPHSPVL  206 (370)
T ss_pred             EEEEEe--cCCEEEEeeccCcEEEEECCCCCCceeeeeeccCCCCceeEEEe--cCeEEEEEeCCCeEEEEccCCCCCeE
Confidence            344444  4778888886667778887643   3445555555555677775  66788888999999999998765443


Q ss_pred             EeecCCC-CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec----CceEE-EEecCCCEEEEEEcCCcEEEEE
Q 003271          635 TFTGHST-TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----GATQM-RFQPRLGRILAAAIENYISILD  708 (835)
Q Consensus       635 ~~~~h~~-~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----~i~~l-~fsp~~~~ll~~s~dg~I~IwD  708 (835)
                      .-.-..+ .+.++..+++.. +++  ..+.-+.+-|....+....+..    .+.++ .+.-.+++.+++..+..+-+.|
T Consensus       207 i~~~n~g~g~~sv~vsdnr~-y~v--vy~egvlivd~s~~ssp~~~gsyet~~p~~~s~v~Vs~~~~Yvadga~gl~~id  283 (370)
T COG5276         207 IGSYNTGPGTYSVSVSDNRA-YLV--VYDEGVLIVDVSGPSSPTVFGSYETSNPVSISTVPVSGEYAYVADGAKGLPIID  283 (370)
T ss_pred             EEEEecCCceEEEEecCCee-EEE--EcccceEEEecCCCCCceEeeccccCCcccccceecccceeeeeccccCceeEe
Confidence            3222223 678888776632 332  2245677778777664444431    11121 3344456677777777777777


Q ss_pred             CCCCeEE---EEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          709 VETQVCR---LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       709 l~t~~~i---~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      +.+....   ..+......-..+..  .+.++.........+.+....+   ......+....+.++..+-+.+.+.+..
T Consensus       284 isnp~spfl~ss~~t~g~~a~gi~a--y~~y~yiadkn~g~vV~~s~~s---~m~~~~g~~ti~~s~~v~~~~q~~y~~d  358 (370)
T COG5276         284 ISNPPSPFLSSSLDTAGYQAAGIRA--YGNYNYIADKNTGAVVDASPPS---MMDKRPGRPTIGQSCDVSVDTQIIYSTD  358 (370)
T ss_pred             ccCCCCCchhccccCCCccccceEE--ecCeeEeccCCceEEEeCCChh---hcccccCcceEeeecceEEEeeEEEEee
Confidence            7643211   111111111222222  2334443332244444444321   1111112222334444444555778888


Q ss_pred             cCCeEEEEEc
Q 003271          786 CYETLELWNM  795 (835)
Q Consensus       786 ~dg~I~IwDl  795 (835)
                      .++.+.||+.
T Consensus       359 ~~~gl~i~~~  368 (370)
T COG5276         359 YNGGLSIIEY  368 (370)
T ss_pred             cCCCEEEEEe
Confidence            8888888875

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=94.45  E-value=8.5  Score=41.79  Aligned_cols=163  Identities=10%  Similarity=0.091  Sum_probs=94.0

Q ss_pred             cEEEEECCCCeeeeEee---------cCceEEEEecCC-----CEEEEEEc-CCcEEEEECCCCeEEEEEcCCC------
Q 003271          664 EIRYWSINNGSCAGVFK---------SGATQMRFQPRL-----GRILAAAI-ENYISILDVETQVCRLKLQGHK------  722 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~---------~~i~~l~fsp~~-----~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~------  722 (835)
                      .|.+||+.+.+.++.+.         +....+++....     .+++.+.. .+.|.|||+.+++..+.+..+.      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            67788888888777664         225567776633     34444444 3689999999987765554321      


Q ss_pred             -------------CCeEEEEEcC---CCCEEEEEeCCeEEEEEcCC-----CCCc------ceEEEeecCCCceEEEEEe
Q 003271          723 -------------NQVHSVCWNT---SGEYLASVSDELVRVWSIGS-----GSKG------ECIHELSCTGNKFHSCVFH  775 (835)
Q Consensus       723 -------------~~I~sl~fsp---dg~~LasgsDg~I~IwDl~t-----~~~~------~~i~~l~~~~~~V~sv~fs  775 (835)
                                   ..+..++.+|   ++++|+...=...++|.+.+     ....      ..+..+-........++++
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D  194 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAID  194 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEE
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEEC
Confidence                         2355666655   66777776622233444332     1110      1222222223456778899


Q ss_pred             CCCCEEEEEEcCCeEEEEEcCC-----Cc-EEEeccC-CCCeeEEEEeC--CCCEEEEEE
Q 003271          776 PTFPSLLVIGCYETLELWNMTE-----NK-TLTLSAH-DKLVSSLAAST--VNGMVASAS  826 (835)
Q Consensus       776 pdg~~L~sgs~dg~I~IwDl~~-----~~-~~~l~~h-~~~V~~la~sp--dg~~LaSgs  826 (835)
                      ++|..+++--..+.|..|+..+     .. .+..... -..+.++.+.+  +|.+.+.+.
T Consensus       195 ~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~sn  254 (287)
T PF03022_consen  195 PNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLSN  254 (287)
T ss_dssp             TTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE-
T ss_pred             CCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEEC
Confidence            9998777777888999999886     21 2222222 35788999998  777666554

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>PRK10350 hypothetical protein; Provisional

Probab=94.44  E-value=0.15  Score=46.65  Aligned_cols=30  Identities=33%  Similarity=0.313  Sum_probs=16.1

Q ss_pred             ccccchhhhhh-hHHHHHHHHHHHHHHHHHh
Q 003271           68 NEKHSESAASY-IESQVIKAREQQQQQQQQH   97 (835)
Q Consensus        68 ~~~~s~~~~~y-iq~qq~q~~~qqqqqqq~~   97 (835)
                      +..++.....| +.+++..+.+.|.+|++++
T Consensus        21 N~~NNPnqpGY~ipSQQRmQtqMQ~QQ~qQq   51 (145)
T PRK10350         21 NTLNNPNQPGYQIPSQQRMQTQMQTQQIQQK   51 (145)
T ss_pred             hccCCCCCCCCcCcHHHHHHHHHHHHHHHHH
Confidence            34455556678 6666655555444444333

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=94.41  E-value=14  Score=43.55  Aligned_cols=245  Identities=12%  Similarity=0.106  Sum_probs=120.1

Q ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCe---EEEEeccC-CCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271          564 SPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEH-TQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       564 Spdg~~Lasgs~Dg~I~VWd~~t~~---~i~~l~~h-~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      ..++..++.+..+|.+....+....   .+..+ +. .....++.+..++ .+|+.|+.-|.=.++.+......+.....
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~-g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~  297 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYL-GTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLP  297 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEE-EE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE-
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEc-CCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEecc
Confidence            4567788899999999888775433   12222 22 4456677776554 47888887555444444433322222222


Q ss_pred             CCCCeEEEEEcCC---CC-------cEEEEEe--CCCcEEEEECCCCe---eeeEee-cCceEEEEecC----CCEEEEE
Q 003271          639 HSTTVMSLDFHPS---KE-------DLLCSCD--NNSEIRYWSINNGS---CAGVFK-SGATQMRFQPR----LGRILAA  698 (835)
Q Consensus       639 h~~~V~sl~fsp~---g~-------~ll~sgs--~Dg~I~iwDl~s~~---~~~~~~-~~i~~l~fsp~----~~~ll~~  698 (835)
                      .-++|.++++.+.   +.       .++++++  .+|.+++..---+-   ...... .++..+-.-+.    +.+++..
T Consensus       298 N~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S  377 (504)
T PF10433_consen  298 NWGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLS  377 (504)
T ss_dssp             ---SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEE
T ss_pred             CcCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEE
Confidence            4478888888532   12       4554443  56778776432111   111111 11333222221    3444444


Q ss_pred             EcCCcEEEEECC---CCeEEEEEc--C---CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec-CCCce
Q 003271          699 AIENYISILDVE---TQVCRLKLQ--G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-TGNKF  769 (835)
Q Consensus       699 s~dg~I~IwDl~---t~~~i~~l~--~---h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~-~~~~V  769 (835)
                      . ...-.++.+.   ..+.+..+.  +   ....+.+-.+.  +..++=.....|++.+....   ........ .+..|
T Consensus       378 ~-~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~~i~l~~~~~~---~~~~~w~~~~~~~I  451 (504)
T PF10433_consen  378 F-PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPKGIRLIDLEDG---KLTQEWKPPAGSII  451 (504)
T ss_dssp             E-SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESSEEEEEESSST---SEEEEEE-TTS---
T ss_pred             c-CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecCeEEEEECCCC---eEEEEEeCCCCCeE
Confidence            4 4444555553   233332221  1   12223333333  55566666667899987665   44444433 33445


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eec-----cCCCCeeEEEEeC
Q 003271          770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-----AHDKLVSSLAAST  817 (835)
Q Consensus       770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-----~h~~~V~~la~sp  817 (835)
                      .+++..  +.+++++..++.+.++.+...... ...     .....|.|+...|
T Consensus       452 ~~a~~~--~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eis~l~i~p  503 (504)
T PF10433_consen  452 VAASIN--DPQVLVALSGGELVYFELDDNKISVSDNDETILELDNEISCLSIEP  503 (504)
T ss_dssp             SEEEES--SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-SS-EEEEE---
T ss_pred             EEEEEC--CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCCCceEEEEeCC
Confidence            444443  356888888889999998877764 211     2567888888766

...

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=94.40  E-value=2.8  Score=51.14  Aligned_cols=27  Identities=33%  Similarity=0.405  Sum_probs=21.4

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVL  581 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~V  581 (835)
                      .-.|..|.++++|++||..|..|.+.+
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~v~V~  110 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRGVVVL  110 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCcEEEE
Confidence            346889999999999999887664444

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=94.24  E-value=1.4  Score=44.58  Aligned_cols=173  Identities=13%  Similarity=0.078  Sum_probs=97.8

Q ss_pred             CCCEEEEEEC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceE
Q 003271          608 SLSRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQ  685 (835)
Q Consensus       608 dg~~Latgs~--Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~  685 (835)
                      ++.++.+.+.  ...|++||+.+++........ ...+..=-...-++.+..-.-.+|.-..+|.++.+++..+.-.-..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~-~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLA-PDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecC-CccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc
Confidence            4556665554  347999999988754332222 1222221122224455556667899999999999988877655444


Q ss_pred             EEEecCCCEEEEEEcCCcEEEEECCCCeEEE----EEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceE
Q 003271          686 MRFQPRLGRILAAAIENYISILDVETQVCRL----KLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI  759 (835)
Q Consensus       686 l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~----~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i  759 (835)
                      -....++..++.+.....++.-|.++.....    ++.+ .-..+..+.|- +|.+.+-.- +..|...|..++   +.+
T Consensus       134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sG---rV~  209 (262)
T COG3823         134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSG---RVV  209 (262)
T ss_pred             eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCC---cEE
Confidence            4455666777777777777777776543322    2222 11223334442 454444333 445555555555   222


Q ss_pred             EE------------eecCCCceEEEEEeCCCCEEEEEE
Q 003271          760 HE------------LSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       760 ~~------------l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      ..            ...+.+..+.+++.|+...++..+
T Consensus       210 ~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         210 AWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            22            123345678899999885555544

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=94.14  E-value=0.14  Score=39.43  Aligned_cols=33  Identities=21%  Similarity=0.438  Sum_probs=29.3

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~  588 (835)
                      ...|.+++|+|...+||.|..||.|.||.+ +++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~q   43 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQ   43 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCc
Confidence            456999999999999999999999999998 444

>PHA02790 Kelch-like protein; Provisional

Probab=94.08  E-value=1.8  Score=50.71  Aligned_cols=177  Identities=7%  Similarity=-0.002  Sum_probs=82.7

Q ss_pred             CCCEEEEEeCCC-----eEEEEEcCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEECC--CeEEEEecCCCCceeEEe
Q 003271          566 DGKLLATGGHDK-----KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       566 dg~~Lasgs~Dg-----~I~VWd~~t~~~i~--~l~~h~~~V~sv~fspdg~~Latgs~D--g~I~IWDl~t~~~~~~~~  636 (835)
                      ++.++++||.++     .+..||..+.+-..  .+.........+.  -++.+.+.|+.+  ..+..||..++..  ...
T Consensus       271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~~~~iYviGG~~~~~sve~ydp~~n~W--~~~  346 (480)
T PHA02790        271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--ANNKLYVVGGLPNPTSVERWFHGDAAW--VNM  346 (480)
T ss_pred             CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--ECCEEEEECCcCCCCceEEEECCCCeE--EEC
Confidence            355667776543     56778877654332  2211111122222  367777777764  3578888765543  121


Q ss_pred             ecCCCCe--EEEEEcCCCCcEEEEEeCCC---cEEEEECCCCeeeeEee--cCc-eEEEEecCCCEEEEEEcCCcEEEEE
Q 003271          637 TGHSTTV--MSLDFHPSKEDLLCSCDNNS---EIRYWSINNGSCAGVFK--SGA-TQMRFQPRLGRILAAAIENYISILD  708 (835)
Q Consensus       637 ~~h~~~V--~sl~fsp~g~~ll~sgs~Dg---~I~iwDl~s~~~~~~~~--~~i-~~l~fsp~~~~ll~~s~dg~I~IwD  708 (835)
                      ..-..+.  .+++..  ++.+.+.|+.++   .+..||.++.+....-.  .+. ...+..- ++.|++.+  |.+.+||
T Consensus       347 ~~l~~~r~~~~~~~~--~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~-~~~IYv~G--G~~e~yd  421 (480)
T PHA02790        347 PSLLKPRCNPAVASI--NNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVF-GRRLFLVG--RNAEFYC  421 (480)
T ss_pred             CCCCCCCcccEEEEE--CCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEE-CCEEEEEC--CceEEec
Confidence            1111111  122222  245767776543   47788887765443211  111 1111122 34444443  4577888


Q ss_pred             CCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCC
Q 003271          709 VETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSG  753 (835)
Q Consensus       709 l~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~  753 (835)
                      .++.+-..  .+....... +++. -+|++.+.|+ +     ..|.+||..++
T Consensus       422 p~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        422 ESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             CCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence            87654332  221111112 2222 2455555555 3     24566665544

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.07  E-value=13  Score=41.85  Aligned_cols=185  Identities=6%  Similarity=-0.032  Sum_probs=97.8

Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecC-CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce-EE--
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT-QM--  686 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~-~l--  686 (835)
                      .++++..||.|.-.|.+++.......... ...+.+-.+..+|+  ++.++.++.++.+|.++++.+..+..... .+  
T Consensus        70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~--i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~~  147 (370)
T COG1520          70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK--IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYAS  147 (370)
T ss_pred             eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe--EEEecccceEEEEECCCCcEEEEEecCCCeEEec
Confidence            45555788888888888776422111111 11222222333554  55777788999999998988877765541 11  


Q ss_pred             EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC---CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEE
Q 003271          687 RFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       687 ~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~  761 (835)
                      ........++..+.++.++..|..+++.+.......   ..+..-....++..++...  ++.+.-+|..++.   .+..
T Consensus       148 ~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~G~---~~w~  224 (370)
T COG1520         148 PPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGTVYVGSDGYDGILYALNAEDGT---LKWS  224 (370)
T ss_pred             CcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecceEEEecCCCcceEEEEEccCCc---Eeee
Confidence            111223455555578999999999988877654322   1111111122333333332  3356666666652   2222


Q ss_pred             ee----cCCC------ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          762 LS----CTGN------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       762 l~----~~~~------~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      ..    ....      .+..-...-++ .++.++.++.+...|..+++.+
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~v~v~~-~~~~~~~~g~~~~l~~~~G~~~  273 (370)
T COG1520         225 QKVSQTIGRTAISTTPAVDGGPVYVDG-GVYAGSYGGKLLCLDADTGELI  273 (370)
T ss_pred             eeeecccCcccccccccccCceEEECC-cEEEEecCCeEEEEEcCCCceE
Confidence            10    0000      00000111112 2466777777888888888877

>PLN02193 nitrile-specifier protein

Probab=94.02  E-value=16  Score=42.72  Aligned_cols=169  Identities=8%  Similarity=-0.023  Sum_probs=81.5

Q ss_pred             CcEEEEEeCC-------CcEEEEECCCCeeeeEee---cC----ceEEEEecCCCEEEEEEcC-----CcEEEEECCCCe
Q 003271          653 EDLLCSCDNN-------SEIRYWSINNGSCAGVFK---SG----ATQMRFQPRLGRILAAAIE-----NYISILDVETQV  713 (835)
Q Consensus       653 ~~ll~sgs~D-------g~I~iwDl~s~~~~~~~~---~~----i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~  713 (835)
                      +.+++.|+.+       ..+.+||+.+.+-...-.   .+    .......-++..++.|+.+     +.+.+||+.+.+
T Consensus       176 ~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~~  255 (470)
T PLN02193        176 NKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTNE  255 (470)
T ss_pred             CEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCCE
Confidence            4566666643       347888988765442111   01    0111122233445555543     468899998764


Q ss_pred             EEEEEcC----CCCCeEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCcceEEEeec------CCCceEEEEEeCC
Q 003271          714 CRLKLQG----HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHPT  777 (835)
Q Consensus       714 ~i~~l~~----h~~~I~sl~fspdg~~Lasgs-Dg-----~I~IwDl~t~~~~~~i~~l~~------~~~~V~sv~fspd  777 (835)
                      -...-..    ....-.+++. -++++++.|+ ++     .+.+||+.+..    ...+..      .... ..++. -+
T Consensus       256 W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~----W~~~~~~~~~~~~R~~-~~~~~-~~  328 (470)
T PLN02193        256 WKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKK----WFHCSTPGDSFSIRGG-AGLEV-VQ  328 (470)
T ss_pred             EEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCE----EEeCCCCCCCCCCCCC-cEEEE-EC
Confidence            3321110    1111122322 2455555554 32     46788877642    111111      1111 12222 25


Q ss_pred             CCEEEEEEcC----CeEEEEEcCCCcEEEeccC----CCCeeEEEEeCCCCEEEEEECC
Q 003271          778 FPSLLVIGCY----ETLELWNMTENKTLTLSAH----DKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       778 g~~L~sgs~d----g~I~IwDl~~~~~~~l~~h----~~~V~~la~spdg~~LaSgs~D  828 (835)
                      ++.+++++.+    ..|.+||+.+.+...+...    .......+..-++++++.|+.+
T Consensus       329 gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~  387 (470)
T PLN02193        329 GKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI  387 (470)
T ss_pred             CcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence            6666666655    4699999998887654322    1111111223356777777753

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=94.00  E-value=3.4  Score=47.70  Aligned_cols=266  Identities=14%  Similarity=0.022  Sum_probs=131.8

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      ..+|..+.++-.|. |.+|+.|| +..||..+++.+..-.... ..|..+..+-.+ .|.+|+++| |++.+.+.....-
T Consensus       164 d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~qg-~LWVGTdqG-v~~~e~~G~~~sn  239 (671)
T COG3292         164 DTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQG-RLWVGTDQG-VYLQEAEGWRASN  239 (671)
T ss_pred             CccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhcC-cEEEEeccc-eEEEchhhccccc
Confidence            34688888888884 55676665 7778888888776554433 566666555454 566777776 7887776532211


Q ss_pred             EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIENYISILD  708 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg~I~IwD  708 (835)
                      ....-....|..+.-+..|.  +..|+..|..+.--.+.+-.+...+     +.+.++..+.+ +.+-+++.++.+++-+
T Consensus       240 ~~~~lp~~~I~ll~qD~qG~--lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vnsL~~D~d-GsLWv~t~~giv~~~~  316 (671)
T COG3292         240 WGPMLPSGNILLLVQDAQGE--LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVNSLWLDTD-GSLWVGTYGGIVRYLT  316 (671)
T ss_pred             cCCCCcchheeeeecccCCC--EEEeecccceeEecCCCCccccccccCCccccccceeeccC-CCEeeeccCceEEEec
Confidence            11111223444444444443  3345545544322222221111111     12333444444 4455666666666544


Q ss_pred             CCCCeEEEEEcCCCC-CeEEEEEcC---CCCEEEEEeCCeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEE
Q 003271          709 VETQVCRLKLQGHKN-QVHSVCWNT---SGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       709 l~t~~~i~~l~~h~~-~I~sl~fsp---dg~~LasgsDg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L~s  783 (835)
                      .+ ......+....+ .+-.++..|   +.......+-|.+.+-+-.++   ..+... ...+..|+.+++..++. +..
T Consensus       317 a~-w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns~g~L~van~stG---~~v~sv~q~Rg~nit~~~~d~~g~-lWl  391 (671)
T COG3292         317 AD-WKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNSIGELMVANGSTG---ELVRSVHQLRGMNITTTLEDSRGR-LWL  391 (671)
T ss_pred             ch-hhheeeeecCCCchhhhhccCchhcccceeeccccceEEEecCCCC---cEEEEeeeccccccchhhhccCCc-EEE
Confidence            32 111111111111 111111111   011111111223333333333   222221 11234566666666544 777


Q ss_pred             EEcCCeEEEEEcCC-CcEEEec--cCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          784 IGCYETLELWNMTE-NKTLTLS--AHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       784 gs~dg~I~IwDl~~-~~~~~l~--~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      ++..+-+..|+..+ +..+...  ...++|..|.=.|+++ |..|+.+|.+++
T Consensus       392 gs~q~GLsrl~n~n~~avlde~agl~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         392 GSMQNGLSRLDNKNEWAVLDEDAGLPSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             EecccchhhhccCCcccccccccCCcccceeeeeecCCCC-EEEeccCCeEec
Confidence            77776677777666 4444222  2356788888888888 677888887653

>PLN02153 epithiospecifier protein

Probab=93.91  E-value=11  Score=41.68  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=52.1

Q ss_pred             CCCEEEEEeCC-------CeEEEEEcCCCeEEEEec--c-CCC---CeEEEEECCCCCEEEEEECC-----CeEEEEecC
Q 003271          566 DGKLLATGGHD-------KKAVLWCTESFTVKSTLE--E-HTQ---WITDVRFSPSLSRLATSSAD-----RTVRVWDTE  627 (835)
Q Consensus       566 dg~~Lasgs~D-------g~I~VWd~~t~~~i~~l~--~-h~~---~V~sv~fspdg~~Latgs~D-----g~I~IWDl~  627 (835)
                      ++++++.|+.+       ..+.+||+.+.+-.....  . ...   ....+.+  ++++++.|+.+     ..|.+||+.
T Consensus        32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~  109 (341)
T PLN02153         32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV--GTKLYIFGGRDEKREFSDFYSYDTV  109 (341)
T ss_pred             CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE--CCEEEEECCCCCCCccCcEEEEECC
Confidence            45566666653       357888887754332111  0 010   1222333  45677777653     357888887


Q ss_pred             CCCceeEEeecC-----C-CC-eEEEEEcCCCCcEEEEEeCC-----------CcEEEEECCCCeee
Q 003271          628 NPDYSLRTFTGH-----S-TT-VMSLDFHPSKEDLLCSCDNN-----------SEIRYWSINNGSCA  676 (835)
Q Consensus       628 t~~~~~~~~~~h-----~-~~-V~sl~fsp~g~~ll~sgs~D-----------g~I~iwDl~s~~~~  676 (835)
                      +...  ..+...     . .. -.+++.. + +.+++.|+.+           ..|.+||+.+.+-.
T Consensus       110 t~~W--~~~~~~~~~~~p~~R~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~  172 (341)
T PLN02153        110 KNEW--TFLTKLDEEGGPEARTFHSMASD-E-NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV  172 (341)
T ss_pred             CCEE--EEeccCCCCCCCCCceeeEEEEE-C-CEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence            6543  211110     1 11 1222222 2 3466666643           25778898876543

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=93.90  E-value=4  Score=41.86  Aligned_cols=56  Identities=16%  Similarity=0.148  Sum_probs=40.8

Q ss_pred             CEEEEEeCCCeEEEEEcC--CCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---C---eEEEE
Q 003271          568 KLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R---TVRVW  624 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~--t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g---~I~IW  624 (835)
                      +.|+.+...++|.+|++.  ......++..- +.|..+.++..|++|+|--.+   .   .+|+|
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            355444667889999987  45566666544 789999999999999997442   2   56665

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=93.80  E-value=6.4  Score=43.27  Aligned_cols=100  Identities=12%  Similarity=0.050  Sum_probs=48.0

Q ss_pred             CcEEEEEeCC-----CcEEEEECCCCeee---eEe---ecCce-EEEEecCCCEEEEEEc-----CCcEEEEECCCCeEE
Q 003271          653 EDLLCSCDNN-----SEIRYWSINNGSCA---GVF---KSGAT-QMRFQPRLGRILAAAI-----ENYISILDVETQVCR  715 (835)
Q Consensus       653 ~~ll~sgs~D-----g~I~iwDl~s~~~~---~~~---~~~i~-~l~fsp~~~~ll~~s~-----dg~I~IwDl~t~~~i  715 (835)
                      +.+++.|+.+     ..+..||+.+.+..   ..+   ..... ..+..-++..++.|+.     ...+..||+.+.+-.
T Consensus        73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~  152 (323)
T TIGR03548        73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDGTLYVGGGNRNGKPSNKSYLFNLETQEWF  152 (323)
T ss_pred             CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECCEEEEEeCcCCCccCceEEEEcCCCCCee
Confidence            3466666644     35777787765531   111   11111 1112223444555553     246888998865432


Q ss_pred             E--EEcCCCCCeEEEEEcCCCCEEEEEe-CC----eEEEEEcCCC
Q 003271          716 L--KLQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWSIGSG  753 (835)
Q Consensus       716 ~--~l~~h~~~I~sl~fspdg~~Lasgs-Dg----~I~IwDl~t~  753 (835)
                      .  .+... ......+..-++++.+.|+ ++    .+.+||..+.
T Consensus       153 ~~~~~p~~-~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~  196 (323)
T TIGR03548       153 ELPDFPGE-PRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKN  196 (323)
T ss_pred             ECCCCCCC-CCCcceEEEECCEEEEEcCCCCccccceEEEecCCC
Confidence            2  22111 1112222233556666665 43    3568888775

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.61  E-value=9.8  Score=45.47  Aligned_cols=214  Identities=13%  Similarity=0.089  Sum_probs=99.9

Q ss_pred             CCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          555 TSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      .+...++..+|.... ++  +.--.|+||++ +|..+..+.-....+..+.|+.+. .|++...||+|+||++.......
T Consensus        43 ~gGpIAV~r~p~~~~~~~--~a~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~e-eLI~v~k~g~v~Vy~~~ge~ie~  118 (829)
T KOG2280|consen   43 FGGPIAVTRSPSKLVPLY--SARPYIRIFNI-SGQLLGRILWKHGELIGMGWSDDE-ELICVQKDGTVHVYGLLGEFIES  118 (829)
T ss_pred             cCCceEEEeccccccccc--ccceeEEEEec-cccchHHHHhcCCCeeeecccCCc-eEEEEeccceEEEeecchhhhcc
Confidence            344445555553211 11  23346888886 455554444334478899999775 55666799999999987433211


Q ss_pred             EEe--ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec------CceEEE-EecCCCEEEEEEcC--C
Q 003271          634 RTF--TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS------GATQMR-FQPRLGRILAAAIE--N  702 (835)
Q Consensus       634 ~~~--~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~------~i~~l~-fsp~~~~ll~~s~d--g  702 (835)
                      ...  ......|..+.|..+|  +++ -..+|.|.+-+-......+..+.      ...+.. +.|.....+....+  -
T Consensus       119 ~svg~e~~~~~I~ec~~f~~G--Vav-lt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v  195 (829)
T KOG2280|consen  119 NSVGFESQMSDIVECRFFHNG--VAV-LTVSGQVILINGVEEPKLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAV  195 (829)
T ss_pred             cccccccccCceeEEEEecCc--eEE-EecCCcEEEEcCCCcchhhhCCCCCCccCCCcceeEecCCCcceeEEeechhh
Confidence            001  1112234433333333  222 22244444333222212222211      112222 12211111111111  0


Q ss_pred             cEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-CceEEEEEeCCC
Q 003271          703 YISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-NKFHSCVFHPTF  778 (835)
Q Consensus       703 ~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-~~V~sv~fspdg  778 (835)
                      ...++-.+.. .....+....+.+..+..||+.++|+.-. +|.|.+-++...   .++.++.+.. ...-.++|.-+.
T Consensus       196 ~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~---~~lce~~~~~~~~p~qm~Wcgnd  271 (829)
T KOG2280|consen  196 GLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLS---QILCEFNCTDHDPPKQMAWCGND  271 (829)
T ss_pred             hhcccceecccccccccCCCCceEEEEEEcCCcceEEEEecCCcEEEEecchh---hhhhccCCCCCCchHhceeecCC
Confidence            0111111111 11122222345677889999999999888 899988887765   4444444221 122245555443

>PF11498 Activator_LAG-3: Transcriptional activator LAG-3; InterPro: IPR021587 The C

Probab=93.50  E-value=0.021  Score=60.69  Aligned_cols=13  Identities=31%  Similarity=0.547  Sum_probs=0.0

Q ss_pred             HhhhcccCCCCCC
Q 003271          122 QQQRRDSTQHLND  134 (835)
Q Consensus       122 q~q~~~~~~~~~~  134 (835)
                      |+++..+.+++||
T Consensus       372 Q~qQ~qQq~qmng  384 (468)
T PF11498_consen  372 QQQQQQQQHQMNG  384 (468)
T ss_dssp             -------------
T ss_pred             HHHhhhhhhhccc
Confidence            4444455556776

elegans Notch pathway, involved in the control of growth, differentiation and patterning in animal development, relies on either of the receptors GLP-1 or LIN-12 []. Both these receptors promote signalling by the recruitment of LAG-3 to target promoters, where it then acts as a transcriptional activator. LAG-3 works as a ternary complex together with the DNA binding protein, LAG-1 []. ; PDB: 2FO1_D.

>PHA02790 Kelch-like protein; Provisional

Probab=93.45  E-value=3.1  Score=48.66  Aligned_cols=142  Identities=8%  Similarity=0.004  Sum_probs=67.9

Q ss_pred             CcEEEEEeCC--CcEEEEECCCCeeeeE--eecCceE-EEEecCCCEEEEEEcC---CcEEEEECCCCeEEEE--EcCCC
Q 003271          653 EDLLCSCDNN--SEIRYWSINNGSCAGV--FKSGATQ-MRFQPRLGRILAAAIE---NYISILDVETQVCRLK--LQGHK  722 (835)
Q Consensus       653 ~~ll~sgs~D--g~I~iwDl~s~~~~~~--~~~~i~~-l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i~~--l~~h~  722 (835)
                      +.+++.|+.+  ..+..||..+++....  +...... ....-++..+++|+.+   ..+..||.++.+-...  +....
T Consensus       319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r  398 (480)
T PHA02790        319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH  398 (480)
T ss_pred             CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence            4566677653  4678888876544322  2211111 2223344555555544   3477888876543321  11011


Q ss_pred             CCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCC
Q 003271          723 NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE  797 (835)
Q Consensus       723 ~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~  797 (835)
                      .. .+++ .-++++.+.|  |.+.+||..+.. ...+..+........ ++ .-+++..++||.+     ..|.+||..+
T Consensus       399 ~~-~~~~-~~~~~IYv~G--G~~e~ydp~~~~-W~~~~~m~~~r~~~~-~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~  471 (480)
T PHA02790        399 YK-SCAL-VFGRRLFLVG--RNAEFYCESSNT-WTLIDDPIYPRDNPE-LI-IVDNKLLLIGGFYRGSYIDTIEVYNNRT  471 (480)
T ss_pred             cc-ceEE-EECCEEEEEC--CceEEecCCCCc-EeEcCCCCCCccccE-EE-EECCEEEEECCcCCCcccceEEEEECCC
Confidence            11 1222 2345555555  456788887652 122222221122222 22 2355666666643     3677888777


Q ss_pred             CcEE
Q 003271          798 NKTL  801 (835)
Q Consensus       798 ~~~~  801 (835)
                      ++..
T Consensus       472 ~~W~  475 (480)
T PHA02790        472 YSWN  475 (480)
T ss_pred             CeEE
Confidence            6654

>PLN02193 nitrile-specifier protein

Probab=93.32  E-value=10  Score=44.31  Aligned_cols=190  Identities=6%  Similarity=-0.024  Sum_probs=89.7

Q ss_pred             CCCEEEEEECC-------CeEEEEecCCCCceeEEeec-CCC--Ce-EEEEEcCCCCcEEEEEeCC-----CcEEEEECC
Q 003271          608 SLSRLATSSAD-------RTVRVWDTENPDYSLRTFTG-HST--TV-MSLDFHPSKEDLLCSCDNN-----SEIRYWSIN  671 (835)
Q Consensus       608 dg~~Latgs~D-------g~I~IWDl~t~~~~~~~~~~-h~~--~V-~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~  671 (835)
                      ++.+++.|+.+       ..+.+||+.+.........+ ...  .. .+++..  +..+++.|+.+     ..+.+||+.
T Consensus       175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~--~~~lYvfGG~~~~~~~ndv~~yD~~  252 (470)
T PLN02193        175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSI--GSTLYVFGGRDASRQYNGFYSFDTT  252 (470)
T ss_pred             CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEE--CCEEEEECCCCCCCCCccEEEEECC
Confidence            34566666643       24778888765432111111 111  01 112222  34566677654     468889998


Q ss_pred             CCeeeeEeec-----C-ceEEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEEEEc-----CCCCCeEEEEEcCCCC
Q 003271          672 NGSCAGVFKS-----G-ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGE  735 (835)
Q Consensus       672 s~~~~~~~~~-----~-i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~l~-----~h~~~I~sl~fspdg~  735 (835)
                      +.+.......     + ....+..-++..++.|+.+     ..+..||+.+.+-...-.     ..... .+++. -+++
T Consensus       253 t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~-~~~~~-~~gk  330 (470)
T PLN02193        253 TNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGG-AGLEV-VQGK  330 (470)
T ss_pred             CCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCC-cEEEE-ECCc
Confidence            7665432211     1 1111222234455555543     346788887654322110     00111 12222 2456


Q ss_pred             EEEEEe-C----CeEEEEEcCCCCCcceEEEee-cC-CCceEEEEEeCCCCEEEEEEcC--------------CeEEEEE
Q 003271          736 YLASVS-D----ELVRVWSIGSGSKGECIHELS-CT-GNKFHSCVFHPTFPSLLVIGCY--------------ETLELWN  794 (835)
Q Consensus       736 ~Lasgs-D----g~I~IwDl~t~~~~~~i~~l~-~~-~~~V~sv~fspdg~~L~sgs~d--------------g~I~IwD  794 (835)
                      +++.++ +    ..|.+||+.+..- ..+.... .. .....+++ .-+++.+++|+..              ..+.+||
T Consensus       331 iyviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D  408 (470)
T PLN02193        331 VWVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASA-AVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALD  408 (470)
T ss_pred             EEEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEE-EECCEEEEECCccCCccccccCccceeccEEEEE
Confidence            666555 4    4689999887521 1111110 01 11112222 2345566666642              2588999


Q ss_pred             cCCCcEEEe
Q 003271          795 MTENKTLTL  803 (835)
Q Consensus       795 l~~~~~~~l  803 (835)
                      +.+.....+
T Consensus       409 ~~t~~W~~~  417 (470)
T PLN02193        409 TETLQWERL  417 (470)
T ss_pred             cCcCEEEEc
Confidence            988876644

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=93.21  E-value=0.02  Score=67.82  Aligned_cols=118  Identities=19%  Similarity=0.247  Sum_probs=73.7

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEE-----------ECCCCCEEEEEECCCeEEEEec
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR-----------FSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~-----------fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      |..|-|.++.-++.++-.++.|++.+.++... ..+.+|...+++++           .+|||+.|++++.||.++.|-+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            44444555677888888889998877654322 34455776666554           5899999999999999999876


Q ss_pred             CCCC----ceeEEeecCC-CCeEEEEEcCCC---------CcEEEEEeCCCcEEEEECCCCeee
Q 003271          627 ENPD----YSLRTFTGHS-TTVMSLDFHPSK---------EDLLCSCDNNSEIRYWSINNGSCA  676 (835)
Q Consensus       627 ~t~~----~~~~~~~~h~-~~V~sl~fsp~g---------~~ll~sgs~Dg~I~iwDl~s~~~~  676 (835)
                      --..    .+++..+.|+ .+-.|.-|+...         ..+|-+...+..+++|.....+|.
T Consensus       265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence            4211    1234455555 232333233221         123334455678999988877776

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=93.19  E-value=29  Score=43.20  Aligned_cols=156  Identities=18%  Similarity=0.209  Sum_probs=92.5

Q ss_pred             CCCCCEEEEEEe---C----CCCEEEEEeCCCeEEEEEcC------C---------CeEEEEecc---CCCCeEEEEECC
Q 003271          553 ASTSKVESCHFS---P----DGKLLATGGHDKKAVLWCTE------S---------FTVKSTLEE---HTQWITDVRFSP  607 (835)
Q Consensus       553 gH~~~V~sl~fS---p----dg~~Lasgs~Dg~I~VWd~~------t---------~~~i~~l~~---h~~~V~sv~fsp  607 (835)
                      .-..+|..|+|.   .    ..++|++= ....+.|+...      .         ..++..+..   ...+..+|+|+|
T Consensus        77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vr-t~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP  155 (765)
T PF10214_consen   77 DDGSPIKQIKFATLSESFDEKSRWLAVR-TETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP  155 (765)
T ss_pred             CCCCCeeEEEecccccccCCcCcEEEEE-cCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence            456788889888   2    22355543 45667777611      1         123334432   233677899998


Q ss_pred             -CCCEEEEEECCCeEEEEecCCCC----ceeEEeecCC----------CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC
Q 003271          608 -SLSRLATSSADRTVRVWDTENPD----YSLRTFTGHS----------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN  672 (835)
Q Consensus       608 -dg~~Latgs~Dg~I~IWDl~t~~----~~~~~~~~h~----------~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s  672 (835)
                       +...||+....|...||++....    ..+.....+.          +....|.|.++.+.+|+ ++ ...+.++|+++
T Consensus       156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv-~~-r~~l~~~d~~~  233 (765)
T PF10214_consen  156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLV-CN-RSKLMLIDFES  233 (765)
T ss_pred             CccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEE-Ec-CCceEEEECCC
Confidence             45689999999999999992111    1111111111          22347788877665554 43 56899999988


Q ss_pred             Ceeee-Eee----cCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271          673 GSCAG-VFK----SGATQMRFQPRLGRILAAAIENYISILDVET  711 (835)
Q Consensus       673 ~~~~~-~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t  711 (835)
                      ..... ...    ..+..+.-++.....+..-....|..+|+..
T Consensus       234 ~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~  277 (765)
T PF10214_consen  234 NWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS  277 (765)
T ss_pred             CCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence            76533 221    2366677666633333333447788888876

These proteins are found in fungi.

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.99  E-value=0.74  Score=56.62  Aligned_cols=140  Identities=11%  Similarity=0.015  Sum_probs=84.3

Q ss_pred             ceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEE-----EEcC------CCCCeEEEEEcCCCC--EEEEEeCCeEEE
Q 003271          683 ATQMRFQPRLGRILAAAI--ENYISILDVETQVCRL-----KLQG------HKNQVHSVCWNTSGE--YLASVSDELVRV  747 (835)
Q Consensus       683 i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~-----~l~~------h~~~I~sl~fspdg~--~LasgsDg~I~I  747 (835)
                      +..+...+|....++...  +-.|+.||+++.....     -+..      ...-..++.|+|.-.  .+++-.|+.|+|
T Consensus       103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V  182 (1405)
T KOG3630|consen  103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV  182 (1405)
T ss_pred             ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence            334444555444444333  3378888987532211     1111      223455778887543  333334899998


Q ss_pred             EEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec---c-CCCCeeEEEEeCCCCEEE
Q 003271          748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS---A-HDKLVSSLAASTVNGMVA  823 (835)
Q Consensus       748 wDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~---~-h~~~V~~la~spdg~~La  823 (835)
                      ..+.-..  ..+.. .......++++|+|.|+.+++|-..|++.-|...-.....+.   . ....|.+|+|-....++|
T Consensus       183 ~~~~~~~--~~v~s-~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflv  259 (1405)
T KOG3630|consen  183 KSTKQLA--QNVTS-FPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLV  259 (1405)
T ss_pred             hhhhhhh--hhhcc-cCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEE
Confidence            8775431  11111 223567899999999999999999999988875443222221   1 147899999988777666


Q ss_pred             EE
Q 003271          824 SA  825 (835)
Q Consensus       824 Sg  825 (835)
                      +-
T Consensus       260 vy  261 (1405)
T KOG3630|consen  260 VY  261 (1405)
T ss_pred             Ee
Confidence            54

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=92.93  E-value=2.7  Score=50.13  Aligned_cols=109  Identities=12%  Similarity=0.190  Sum_probs=71.0

Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEE--eCCCCEEEEEEcCCeEEEEEcC---
Q 003271          723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF--HPTFPSLLVIGCYETLELWNMT---  796 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f--spdg~~L~sgs~dg~I~IwDl~---  796 (835)
                      ..+.-+.-+.-++..++.+ ...+.|||.+.+.. +.-..+ ...+.|..+.|  .|++..+++.|....|.+|--.   
T Consensus        30 ~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~l-E~~~~f-~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~d  107 (631)
T PF12234_consen   30 SNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVL-EYEESF-SEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYD  107 (631)
T ss_pred             CCcceEeecccCcEEEEECCCCEEEEEEcCCcEE-EEeeee-cCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchh
Confidence            3444455555555555554 44999999988731 111122 45678899988  5789999999999999998531   


Q ss_pred             --CC----c---EEEeccCC-CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          797 --EN----K---TLTLSAHD-KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       797 --~~----~---~~~l~~h~-~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        ..    .   .+.+..|+ .+|.+..|.++|.+++.++  +.+.|+|
T Consensus       108 y~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~d  154 (631)
T PF12234_consen  108 YTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFD  154 (631)
T ss_pred             hhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEEC
Confidence              11    1   12344555 6899999999997666554  3566654

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.90  E-value=20  Score=40.73  Aligned_cols=109  Identities=12%  Similarity=0.008  Sum_probs=64.2

Q ss_pred             cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe-----EEEEEcC--CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271          681 SGATQMRFQPRLGRILAAAIENYISILDVETQV-----CRLKLQG--HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG  753 (835)
Q Consensus       681 ~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~-----~i~~l~~--h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~  753 (835)
                      ..+..+.+.+++..++++ ..|.+..- ...+.     .......  ....+.++.|.+++..+++|..|.+.+.. ..+
T Consensus       281 ~~l~~v~~~~dg~l~l~g-~~G~l~~S-~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G  357 (398)
T PLN00033        281 RRIQNMGWRADGGLWLLT-RGGGLYVS-KGTGLTEEDFDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGG  357 (398)
T ss_pred             cceeeeeEcCCCCEEEEe-CCceEEEe-cCCCCcccccceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCC
Confidence            346778888887666554 55555443 22232     1222211  22358899999999988888888766653 333


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      +..............++.+.|.++++ .++.+.+|.|.-|
T Consensus       358 ~tW~~~~~~~~~~~~ly~v~f~~~~~-g~~~G~~G~il~~  396 (398)
T PLN00033        358 KSWKRDKGADNIAANLYSVKFFDDKK-GFVLGNDGVLLRY  396 (398)
T ss_pred             cceeEccccCCCCcceeEEEEcCCCc-eEEEeCCcEEEEe
Confidence            22222221223345678888877655 6777777776654

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=92.86  E-value=7.3  Score=42.82  Aligned_cols=108  Identities=8%  Similarity=0.086  Sum_probs=53.4

Q ss_pred             CCCEEEEEeCC-----CeEEEEEcCCCeE---EEEeccCCCCe--EEEEECCCCCEEEEEEC-----CCeEEEEecCCCC
Q 003271          566 DGKLLATGGHD-----KKAVLWCTESFTV---KSTLEEHTQWI--TDVRFSPSLSRLATSSA-----DRTVRVWDTENPD  630 (835)
Q Consensus       566 dg~~Lasgs~D-----g~I~VWd~~t~~~---i~~l~~h~~~V--~sv~fspdg~~Latgs~-----Dg~I~IWDl~t~~  630 (835)
                      ++.+++.|+.+     ..+..||+.+.+-   ...+..-....  .+++. -++++++.|+.     ...+.+||+.+..
T Consensus        72 ~~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~  150 (323)
T TIGR03548        72 ENGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQE  150 (323)
T ss_pred             CCEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCC
Confidence            56677777754     3567777766543   12221111111  12222 25566677664     2468888988765


Q ss_pred             ceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEECCCCeee
Q 003271          631 YSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNGSCA  676 (835)
Q Consensus       631 ~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~Dg----~I~iwDl~s~~~~  676 (835)
                      ..... +... ......+..-+ +.+++.|+.++    .+.+||+.+.+..
T Consensus       151 W~~~~~~p~~-~r~~~~~~~~~-~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       151 WFELPDFPGE-PRVQPVCVKLQ-NELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             eeECCCCCCC-CCCcceEEEEC-CEEEEEcCCCCccccceEEEecCCCeeE
Confidence            42211 1111 11111211222 45777776553    3568898876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=92.62  E-value=14  Score=41.79  Aligned_cols=14  Identities=7%  Similarity=0.128  Sum_probs=10.1

Q ss_pred             CcEEEEECCCCeee
Q 003271          663 SEIRYWSINNGSCA  676 (835)
Q Consensus       663 g~I~iwDl~s~~~~  676 (835)
                      ..|.+||..+.+..
T Consensus       189 ~~v~~YD~~t~~W~  202 (376)
T PRK14131        189 KEVLSYDPSTNQWK  202 (376)
T ss_pred             ceEEEEECCCCeee
Confidence            35888998876654

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=92.43  E-value=24  Score=40.35  Aligned_cols=147  Identities=12%  Similarity=0.110  Sum_probs=79.7

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC----CC-CEEEEEeCCCeE
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP----DG-KLLATGGHDKKA  579 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp----dg-~~Lasgs~Dg~I  579 (835)
                      ....+.+||.+|.+++|..........               .+-.-..-..+|..+..-.    .. ..||+ -.-.++
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~---------------~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl   99 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPE---------------DLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKL   99 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCc---------------cEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEE
Confidence            346788899999999996633321100               0111112234566665432    22 23443 556788


Q ss_pred             EEEEcCC--Ce-------EEEEeccCCC--CeEEEEECC----C-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe
Q 003271          580 VLWCTES--FT-------VKSTLEEHTQ--WITDVRFSP----S-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV  643 (835)
Q Consensus       580 ~VWd~~t--~~-------~i~~l~~h~~--~V~sv~fsp----d-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V  643 (835)
                      .||.+..  +.       .+..+..|.-  ....+++-|    . ..+|++-+.||.+.+|+-+.-.  ...+....--.
T Consensus       100 ~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~--f~~~lp~~llP  177 (418)
T PF14727_consen  100 SVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFA--FSRFLPDFLLP  177 (418)
T ss_pred             EEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEE--EEEEcCCCCCC
Confidence            8887621  11       1122223322  223333322    2 3578889999999999977532  22222223333


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEEC
Q 003271          644 MSLDFHPSKEDLLCSCDNNSEIRYWSI  670 (835)
Q Consensus       644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl  670 (835)
                      ..++|.+..+ .|++++.+..|..|..
T Consensus       178 gPl~Y~~~tD-sfvt~sss~~l~~Yky  203 (418)
T PF14727_consen  178 GPLCYCPRTD-SFVTASSSWTLECYKY  203 (418)
T ss_pred             cCeEEeecCC-EEEEecCceeEEEecH
Confidence            4567777655 5557777778877764

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=92.23  E-value=0.42  Score=36.75  Aligned_cols=31  Identities=16%  Similarity=0.354  Sum_probs=28.5

Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      ...|.+++|+|...+||.++.||.|.||.++
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4569999999999999999999999999984

>COG1770 PtrB Protease II [Amino acid transport and metabolism]

Probab=92.10  E-value=32  Score=41.02  Aligned_cols=198  Identities=13%  Similarity=0.055  Sum_probs=110.9

Q ss_pred             CeEEEEECCCCCEEEEEEC-----CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEE
Q 003271          599 WITDVRFSPSLSRLATSSA-----DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWS  669 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~-----Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg----~I~iwD  669 (835)
                      .+-.++.+||.+++|-+-.     .-++++-|+.++......+.   +....++|.++++.++++-..++    .|....
T Consensus       130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i~---~~~~~~~Wa~d~~~lfYt~~d~~~rp~kv~~h~  206 (682)
T COG1770         130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEIT---NTSGSFAWAADGKTLFYTRLDENHRPDKVWRHR  206 (682)
T ss_pred             eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhhc---ccccceEEecCCCeEEEEEEcCCCCcceEEEEe
Confidence            4556788999888876533     34789999998875333333   34667899999998888876655    233333


Q ss_pred             CCC----CeeeeEeecC--ceEEEEecCCCEEEEEEcC---CcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEE
Q 003271          670 INN----GSCAGVFKSG--ATQMRFQPRLGRILAAAIE---NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLA  738 (835)
Q Consensus       670 l~s----~~~~~~~~~~--i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~La  738 (835)
                      +.+    .+.+..-+..  ...+.-+.+..+|+....+   +.+++.+......  ........+--..+.-  .+.+++
T Consensus       207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~eY~~eh--~~d~f~  284 (682)
T COG1770         207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVEYSVEH--GGDRFY  284 (682)
T ss_pred             cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcEEeeee--cCcEEE
Confidence            333    1222222222  2233334455666665543   5677887775432  2222111111122221  233333


Q ss_pred             -EEe-CC-eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEE
Q 003271          739 -SVS-DE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTL  801 (835)
Q Consensus       739 -sgs-Dg-~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~  801 (835)
                       -.. +| ..+|+.............+..|...+.--.|+--..+|+....++   .|++++..++...
T Consensus       285 i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~  353 (682)
T COG1770         285 ILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEER  353 (682)
T ss_pred             EEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCcee
Confidence             333 55 566665444111233445556776666667777777788777665   8889998776654

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=91.62  E-value=27  Score=39.26  Aligned_cols=180  Identities=12%  Similarity=0.173  Sum_probs=102.3

Q ss_pred             CcEEEEEeCCCcEEEEECCCCeeeeEee-cCceEEE----EecCCCE--EEEEEc-C---CcEEEEECC--CCeEEEEEc
Q 003271          653 EDLLCSCDNNSEIRYWSINNGSCAGVFK-SGATQMR----FQPRLGR--ILAAAI-E---NYISILDVE--TQVCRLKLQ  719 (835)
Q Consensus       653 ~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-~~i~~l~----fsp~~~~--ll~~s~-d---g~I~IwDl~--t~~~i~~l~  719 (835)
                      +.+++....++-+.+||+. |+.+..+. +....+.    |.-.+..  |++++. +   ..|++|.+.  ++. +..+.
T Consensus        68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~-L~~v~  145 (381)
T PF02333_consen   68 KSLIIGTDKKGGLYVYDLD-GKELQSLPVGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGE-LTDVT  145 (381)
T ss_dssp             G-EEEEEETTTEEEEEETT-S-EEEEE-SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTE-EEE-C
T ss_pred             cceEEEEeCCCCEEEEcCC-CcEEEeecCCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCc-ceEcC
Confidence            3477778888999999998 45555554 2233222    2223333  444443 2   468888665  343 33322


Q ss_pred             C-------CCCCeEEEEEc--C-CCCEEEE-Ee-CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271          720 G-------HKNQVHSVCWN--T-SGEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       720 ~-------h~~~I~sl~fs--p-dg~~Las-gs-Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg~~L~s  783 (835)
                      .       ....++.+|+.  + +|.+.+. .. +|.+..|.+.....    .+.++++.. ...+-.|+......+|++
T Consensus       146 ~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYv  224 (381)
T PF02333_consen  146 DPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV-GSQPEGCVVDDETGRLYV  224 (381)
T ss_dssp             BTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE--SS-EEEEEEETTTTEEEE
T ss_pred             CCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC-CCcceEEEEecccCCEEE
Confidence            1       12346777763  3 4655444 44 88888888863222    245666665 457999999999999999


Q ss_pred             EEcCCeEEEEEcCCC-----cEEEe-c--cCCCCeeEEEEeC--CCC-EEEEE-ECCCcEEEeC
Q 003271          784 IGCYETLELWNMTEN-----KTLTL-S--AHDKLVSSLAAST--VNG-MVASA-SHDKCVKIWK  835 (835)
Q Consensus       784 gs~dg~I~IwDl~~~-----~~~~l-~--~h~~~V~~la~sp--dg~-~LaSg-s~DG~V~IWd  835 (835)
                      +-.+--|+-|+.+..     ..+.. .  .....|-.|++-.  +++ ||+.+ -.+++..|||
T Consensus       225 gEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~  288 (381)
T PF02333_consen  225 GEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYD  288 (381)
T ss_dssp             EETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEE
T ss_pred             ecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEe
Confidence            999999999988632     22222 1  2345678888753  333 44444 4566787775

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=91.48  E-value=26  Score=38.80  Aligned_cols=41  Identities=12%  Similarity=0.172  Sum_probs=23.6

Q ss_pred             eEEEEEcCCCcEEEeccCCCCe-eEEEEeCCCCEEEEEECCC
Q 003271          789 TLELWNMTENKTLTLSAHDKLV-SSLAASTVNGMVASASHDK  829 (835)
Q Consensus       789 ~I~IwDl~~~~~~~l~~h~~~V-~~la~spdg~~LaSgs~DG  829 (835)
                      .+.+||.++.+...+....... ...+..-++++++.|+.+.
T Consensus       291 ~~e~yd~~~~~W~~~~~lp~~~~~~~~~~~~~~iyv~GG~~~  332 (346)
T TIGR03547       291 SSEVYALDNGKWSKVGKLPQGLAYGVSVSWNNGVLLIGGENS  332 (346)
T ss_pred             EeeEEEecCCcccccCCCCCCceeeEEEEcCCEEEEEeccCC
Confidence            5778998877654333222211 2223445788888888653

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.41  E-value=0.024  Score=63.32  Aligned_cols=139  Identities=16%  Similarity=0.292  Sum_probs=97.4

Q ss_pred             eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEE
Q 003271          684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~  761 (835)
                      ....|.+.+..+++++.+..+..||-.... ..... .......++|+.++..++...  .+.+++||+.+...    ..
T Consensus        38 i~~~w~~e~~nlavaca~tiv~~YD~agq~-~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eyt----qq  111 (615)
T KOG2247|consen   38 IIHRWRPEGHNLAVACANTIVIYYDKAGQV-ILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYT----QQ  111 (615)
T ss_pred             ceeeEecCCCceehhhhhhHHHhhhhhcce-ecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhH----HH
Confidence            345677777778888888888888865432 22222 344556788988887766655  88999999987521    11


Q ss_pred             eecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-CCCCeeEEEEeCCCCEEEEEECCC
Q 003271          762 LSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-HDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       762 l~~~-~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      +... ...-.-..|++.++.++.+...+.+.||+..+.+.....+ |...+++++|.+.+ +++.++.|.
T Consensus       112 LE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~  180 (615)
T KOG2247|consen  112 LESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDN  180 (615)
T ss_pred             HhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHH
Confidence            1111 1112226899999999999999999999998887775555 99999999999876 455555454

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=91.38  E-value=36  Score=40.95  Aligned_cols=120  Identities=17%  Similarity=0.171  Sum_probs=65.2

Q ss_pred             eecCceEEEEecCCCEEEEEEcCCcEEEEECCCC--eEEEEEcC-CCCCeEEEEEcC------CCCEEEEEe--CC---e
Q 003271          679 FKSGATQMRFQPRLGRILAAAIENYISILDVETQ--VCRLKLQG-HKNQVHSVCWNT------SGEYLASVS--DE---L  744 (835)
Q Consensus       679 ~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~--~~i~~l~~-h~~~I~sl~fsp------dg~~Lasgs--Dg---~  744 (835)
                      ++..+..+.|..++..+++...+|.|.+||...+  +.+..+.. +...+..-+|-+      ...++++.+  ++   .
T Consensus       128 l~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~  207 (670)
T PF10395_consen  128 LDDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLS  207 (670)
T ss_pred             cccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEE
Confidence            4566888899999999999999999999999322  11112211 222121112222      223444333  22   7


Q ss_pred             EEEEEcCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          745 VRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       745 I~IwDl~t~~~~~~i~~l~---~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      ++++.+....  ..+.++.   .+......+.|+-....|+.- .+++|.+|++..-+..
T Consensus       208 ykL~~l~~~~--~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~  264 (670)
T PF10395_consen  208 YKLISLSNES--SSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQ  264 (670)
T ss_pred             EEEEEeccCC--cceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEE
Confidence            8888882211  2223332   222333333343333334444 6779999999776654

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>KOG1896 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT1 (CPSF subunit) [RNA processing and modification]

Probab=91.36  E-value=50  Score=41.83  Aligned_cols=137  Identities=15%  Similarity=0.118  Sum_probs=77.7

Q ss_pred             CEEEEEEc---------CCcEEEEECCC-----Ce-----EEEEE--cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003271          693 GRILAAAI---------ENYISILDVET-----QV-----CRLKL--QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG  751 (835)
Q Consensus       693 ~~ll~~s~---------dg~I~IwDl~t-----~~-----~i~~l--~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~  751 (835)
                      .++++|+.         .|.++|||+-.     ++     .++.+  +.-++.|..+|= -+| +|+++..-.|.||++.
T Consensus      1047 ~ylavGT~~~~gEDv~~RGr~hi~diIeVVPepgkP~t~~KlKel~~eE~KGtVsavce-V~G-~l~~~~GqKI~v~~l~ 1124 (1366)
T KOG1896|consen 1047 PYLAVGTAFIQGEDVPARGRIHIFDIIEVVPEPGKPFTKNKLKELYIEEQKGTVSAVCE-VRG-HLLSSQGQKIIVRKLD 1124 (1366)
T ss_pred             ceEEEEEeecccccccCcccEEEEEEEEecCCCCCCcccceeeeeehhhcccceEEEEE-ecc-EEEEccCcEEEEEEec
Confidence            46666653         37899998742     21     11111  224567776653 344 4555666789999995


Q ss_pred             CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC-cEEEec---cCCCCeeEEEEeCCCC--EEEEE
Q 003271          752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-KTLTLS---AHDKLVSSLAASTVNG--MVASA  825 (835)
Q Consensus       752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~-~~~~l~---~h~~~V~~la~spdg~--~LaSg  825 (835)
                      .......+.-+   .-.+......--.++|++|.--..|.+.-..+. ..+.+.   ...-.+.++.|--||.  .++++
T Consensus      1125 r~~~ligVaFi---D~~~yv~s~~~vknlIl~gDV~ksisfl~fqeep~rlsL~srd~~~l~v~s~EFLVdg~~L~flvs 1201 (1366)
T KOG1896|consen 1125 RDSELIGVAFI---DLPLYVHSMKVVKNLILAGDVMKSISFLGFQEEPYRLSLLSRDFEPLNVYSTEFLVDGSNLSFLVS 1201 (1366)
T ss_pred             cCCcceeeEEe---ccceeEEehhhhhhheehhhhhhceEEEEEccCceEEEEeecCCchhhceeeeeEEcCCeeEEEEE
Confidence            44221222211   222333333334556777777777776655432 222222   2234577888877776  67888


Q ss_pred             ECCCcEEEe
Q 003271          826 SHDKCVKIW  834 (835)
Q Consensus       826 s~DG~V~IW  834 (835)
                      ..|++|++|
T Consensus      1202 Da~rNi~vy 1210 (1366)
T KOG1896|consen 1202 DADRNIHVY 1210 (1366)
T ss_pred             cCCCcEEEE
Confidence            899999886

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=91.20  E-value=0.056  Score=60.49  Aligned_cols=146  Identities=12%  Similarity=0.149  Sum_probs=104.4

Q ss_pred             eEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe
Q 003271          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (835)
Q Consensus       600 V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~  679 (835)
                      .....|.+.+.-++.++.+..|..||-.....   .-...++....++|+.+++.+++.+-..+.+++||+.+...-..-
T Consensus        37 pi~~~w~~e~~nlavaca~tiv~~YD~agq~~---le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytqqLE  113 (615)
T KOG2247|consen   37 PIIHRWRPEGHNLAVACANTIVIYYDKAGQVI---LELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLE  113 (615)
T ss_pred             cceeeEecCCCceehhhhhhHHHhhhhhccee---cccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHHHHh
Confidence            34556778777788888898999998664322   122234556778899888888888888999999999864322111


Q ss_pred             ecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEE
Q 003271          680 KSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVW  748 (835)
Q Consensus       680 ~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~Iw  748 (835)
                      .++   -.-+.|++....++.+...+.+.|+...+.+.+...-.|...+++++|.+.+..+..+.|..+.+-
T Consensus       114 ~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~  185 (615)
T KOG2247|consen  114 SGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVT  185 (615)
T ss_pred             ccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHh
Confidence            111   222668888888888989999999999887766666558999999999988776655546544433

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=91.13  E-value=6.9  Score=40.17  Aligned_cols=136  Identities=20%  Similarity=0.248  Sum_probs=78.2

Q ss_pred             CEEEEEEcCCcEEEEECCC--CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CC---eEEEE-EcCCC---CCcceE
Q 003271          693 GRILAAAIENYISILDVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DE---LVRVW-SIGSG---SKGECI  759 (835)
Q Consensus       693 ~~ll~~s~dg~I~IwDl~t--~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg---~I~Iw-Dl~t~---~~~~~i  759 (835)
                      +.++++.....|.+|++..  ......|. .-+.|..+.++..|+||++--    ..   .+|+| +.+..   ....++
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~-Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFS-TVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEc-chhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            6677778888999999983  35556665 447899999999999999976    22   55665 22211   110111


Q ss_pred             ---------------------EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE-------EEe----ccC-
Q 003271          760 ---------------------HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-------LTL----SAH-  806 (835)
Q Consensus       760 ---------------------~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~-------~~l----~~h-  806 (835)
                                           .++. ....+.+++..|-...|++|+.+ ++.||.+.....       +.+    ..| 
T Consensus       108 RiaG~~v~~~~~~~~~~qleiiElP-l~~~p~ciaCC~~tG~LlVg~~~-~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  108 RIAGHRVTPSFNESSKDQLEIIELP-LSEPPLCIACCPVTGNLLVGCGN-KLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             EEcccccccCCCCccccceEEEEec-CCCCCCEEEecCCCCCEEEEcCC-EEEEEEEEEEEEecccccEEechhhhhhee
Confidence                                 1111 12355666666654446666554 777877643332       111    112 


Q ss_pred             CC-CeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          807 DK-LVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       807 ~~-~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .+ .+..+++.  +.++|..++ -.++|.
T Consensus       186 ~~~~p~~v~ic--~~yiA~~s~-~ev~Vl  211 (215)
T PF14761_consen  186 DNFKPTQVAIC--EGYIAVMSD-LEVLVL  211 (215)
T ss_pred             cCceEEEEEEE--eeEEEEecC-CEEEEE
Confidence            11 24555654  567776654 455554

>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family

Probab=90.94  E-value=29  Score=38.39  Aligned_cols=64  Identities=6%  Similarity=-0.021  Sum_probs=31.3

Q ss_pred             CCCEEEEEeC-CCeEEEEEcCC----CeEEEEeccC-CCCeEEEEECCCCCEEEEEECC-----------CeEEEEecCC
Q 003271          566 DGKLLATGGH-DKKAVLWCTES----FTVKSTLEEH-TQWITDVRFSPSLSRLATSSAD-----------RTVRVWDTEN  628 (835)
Q Consensus       566 dg~~Lasgs~-Dg~I~VWd~~t----~~~i~~l~~h-~~~V~sv~fspdg~~Latgs~D-----------g~I~IWDl~t  628 (835)
                      ++++.++|+. ...+.++|++.    ...+..+... ......+.  -++++.+.|+.+           ..+..||..+
T Consensus        17 ~~~vyv~GG~~~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~--~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~   94 (346)
T TIGR03547        17 GDKVYVGLGSAGTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAA--IDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKK   94 (346)
T ss_pred             CCEEEEEccccCCeeEEEECCCCCCCceECCCCCCCCcccceEEE--ECCEEEEEeCCCCCCCCCcceecccEEEEECCC
Confidence            4555555554 24566777632    2222222211 11111222  256777777753           2477788876


Q ss_pred             CCc
Q 003271          629 PDY  631 (835)
Q Consensus       629 ~~~  631 (835)
                      ...
T Consensus        95 ~~W   97 (346)
T TIGR03547        95 NSW   97 (346)
T ss_pred             CEE
Confidence            553

Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=90.86  E-value=6  Score=37.50  Aligned_cols=107  Identities=8%  Similarity=0.090  Sum_probs=61.9

Q ss_pred             cCCCEEEEEEcCCcEEEEECCCC--------eEEEEEcCCCCCeEEEEEcC-----CCCEEEEEeCCeEEEEEcCCCCCc
Q 003271          690 PRLGRILAAAIENYISILDVETQ--------VCRLKLQGHKNQVHSVCWNT-----SGEYLASVSDELVRVWSIGSGSKG  756 (835)
Q Consensus       690 p~~~~ll~~s~dg~I~IwDl~t~--------~~i~~l~~h~~~I~sl~fsp-----dg~~LasgsDg~I~IwDl~t~~~~  756 (835)
                      .....|++++..++|.|++....        ..+..+. -...|++|+-.+     +...|+.|+...|..||+..... 
T Consensus         8 G~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaYDV~~N~d-   85 (136)
T PF14781_consen    8 GVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAYDVENNSD-   85 (136)
T ss_pred             CCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEEEcccCch-
Confidence            33344555555566666654422        1122222 345666665432     45789999999999999988632 


Q ss_pred             ceEEEeecCCCceEEEEEe---CCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          757 ECIHELSCTGNKFHSCVFH---PTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       757 ~~i~~l~~~~~~V~sv~fs---pdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                        +. ++.-...++++.+-   ....-++..+.+..|.-||....+..
T Consensus        86 --~F-yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f  130 (136)
T PF14781_consen   86 --LF-YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF  130 (136)
T ss_pred             --hh-hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence              21 12223556666553   22334666666778888887766655

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.84  E-value=3.4  Score=46.39  Aligned_cols=103  Identities=11%  Similarity=0.142  Sum_probs=68.7

Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC--
Q 003271          721 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT--  796 (835)
Q Consensus       721 h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~--  796 (835)
                      ..++|.++.|++|.+.|++-- |++|.+++...... ....++.......|..++|+.+ .-++.....| |.+|-+.  
T Consensus        65 d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pe  142 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPE  142 (657)
T ss_pred             CCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchh
Confidence            456999999999999999987 99999999843321 1223333444556888999877 4466666554 5555443  


Q ss_pred             CCcEEEeccCCCCeeEEEEeCCCCEEEEE
Q 003271          797 ENKTLTLSAHDKLVSSLAASTVNGMVASA  825 (835)
Q Consensus       797 ~~~~~~l~~h~~~V~~la~spdg~~LaSg  825 (835)
                      ...+.....|...|.=..|.++.+.+.-+
T Consensus       143 krslRlVks~~~nvnWy~yc~et~v~LL~  171 (657)
T KOG2377|consen  143 KRSLRLVKSHNLNVNWYMYCPETAVILLS  171 (657)
T ss_pred             hhhhhhhhhcccCccEEEEccccceEeee
Confidence            33333555677778778888877744433

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.81  E-value=6.2  Score=50.14  Aligned_cols=227  Identities=13%  Similarity=0.100  Sum_probs=109.8

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC-CeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~-~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      .....++|+|.-.++|.++.+|.|++|-..-.+.+.....-.. .+..+.|-.......+...+..+.+|.......   
T Consensus        36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~~~~~~~---  112 (993)
T KOG1983|consen   36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLVGISRNLVLSDDDSLHLWSIKIKTG---  112 (993)
T ss_pred             CCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeeecccccceeecccceeeecccccce---
Confidence            3456789999999999999999999997654443322221111 122222222222333334455566666553221   


Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecCceEE-EEecCCCEEEEEEcCCcEEEEEC
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSGATQM-RFQPRLGRILAAAIENYISILDV  709 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~i~~l-~fsp~~~~ll~~s~dg~I~IwDl  709 (835)
                        ..+...+++....+-  -..+.+ ..+.+++||..-......    +....... ...+..-.+..--.+-.-.++-+
T Consensus       113 --~~~~~~~~~~~~~~~--~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~  187 (993)
T KOG1983|consen  113 --VFLKQEITSFVTDPP--PDWLIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLISL  187 (993)
T ss_pred             --eecCCcceeccCCCC--cchhcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceeec
Confidence              112233333332222  112344 778888888753221110    00100000 00000000000000101111111


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCe
Q 003271          710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET  789 (835)
Q Consensus       710 ~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~  789 (835)
                      ....  ..+.-+..++.+..+......+..+..+.+.+|+....   .....+....     ..+.+++..++++-.||.
T Consensus       188 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~-----~~~~~~~~~~v~~h~Dgs  257 (993)
T KOG1983|consen  188 PDAY--LGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASK---YVQSAYLPNG-----QLESRDGSHFVSYHTDGS  257 (993)
T ss_pred             cccc--ccccccccccceeeeecCCCcceeeeeeeeeehhcccc---cchhhccccc-----ccCccCCceEEEEEecCC
Confidence            1001  12223555666666666666666666777777765543   1222222111     122788899999999999


Q ss_pred             EEEEEcCCCcE
Q 003271          790 LELWNMTENKT  800 (835)
Q Consensus       790 I~IwDl~~~~~  800 (835)
                      +.+||...++.
T Consensus       258 ~~fWd~s~g~~  268 (993)
T KOG1983|consen  258 YAFWDVSSGKL  268 (993)
T ss_pred             EEeeecCCCce
Confidence            99999988754

>PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A

Probab=90.74  E-value=39  Score=39.76  Aligned_cols=224  Identities=13%  Similarity=0.130  Sum_probs=108.2

Q ss_pred             CCCCCEEEEEECCCeEEEEecCCCCc-eeEEeecC-CCCeEEEEEcCCCCcEEEEEeC--CCcEEEEECCCCeeeeEee-
Q 003271          606 SPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGH-STTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNGSCAGVFK-  680 (835)
Q Consensus       606 spdg~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h-~~~V~sl~fsp~g~~ll~sgs~--Dg~I~iwDl~s~~~~~~~~-  680 (835)
                      ..++..++.+..+|.+....+..... ......+. .....++++..++..+++.|+.  |+.+..|....-+.+..+. 
T Consensus       219 ~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~g~d~lf~gs~~gds~l~~~~~~~l~~~~~~~N  298 (504)
T PF10433_consen  219 DKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKNGGDYLFVGSEFGDSQLLQISLSNLEVLDSLPN  298 (504)
T ss_dssp             STTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEESTT--EEEEEESSS-EEEEEEESESEEEEEEE--
T ss_pred             cCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcCCCEEEEEEEecCCcEEEEEeCCCcEEEEeccC
Confidence            34577889999999999888775431 12222222 4566788887776445556654  4555566644445555554 


Q ss_pred             -cCceEEEEecC----CC------EEEEEEc---CCcEEEEECCCCeE--EEEEcCC--CCCeEEEEEcC-CCCEEEEEe
Q 003271          681 -SGATQMRFQPR----LG------RILAAAI---ENYISILDVETQVC--RLKLQGH--KNQVHSVCWNT-SGEYLASVS  741 (835)
Q Consensus       681 -~~i~~l~fsp~----~~------~ll~~s~---dg~I~IwDl~t~~~--i~~l~~h--~~~I~sl~fsp-dg~~Lasgs  741 (835)
                       +++..+++...    ..      .+++++.   +|.++++.-.-+-.  .......  ...++.+.... ++.||+.+.
T Consensus       299 ~~Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~  378 (504)
T PF10433_consen  299 WGPIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRNGIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSF  378 (504)
T ss_dssp             --SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEESBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEE
T ss_pred             cCCccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEeccCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEc
Confidence             56777776532    12      6677663   57788774322111  1111112  22333333222 256777777


Q ss_pred             CCeEEEEEcCCCCCcceEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-e-ccCCCCeeEEE
Q 003271          742 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-SAHDKLVSSLA  814 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~l-----~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l-~~h~~~V~~la  814 (835)
                      ...-+|+.+........+..+     ......+.+..+.  +..++=.... .|++.+....+... + ......|.+.+
T Consensus       379 ~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~~ivQVt~~-~i~l~~~~~~~~~~~w~~~~~~~I~~a~  455 (504)
T PF10433_consen  379 PNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DGRIVQVTPK-GIRLIDLEDGKLTQEWKPPAGSIIVAAS  455 (504)
T ss_dssp             SSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TTEEEEEESS-EEEEEESSSTSEEEEEE-TTS---SEEE
T ss_pred             CCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CCeEEEEecC-eEEEEECCCCeEEEEEeCCCCCeEEEEE
Confidence            666667777421111222221     1112222222222  3334433333 58888887777663 2 23445566655


Q ss_pred             EeCCCCEEEEEECCCcEEEe
Q 003271          815 ASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       815 ~spdg~~LaSgs~DG~V~IW  834 (835)
                      +.  +.+++.+..++.+.++
T Consensus       456 ~~--~~~v~v~~~~~~~~~~  473 (504)
T PF10433_consen  456 IN--DPQVLVALSGGELVYF  473 (504)
T ss_dssp             ES--SSEEEEEE-TTEEEEE
T ss_pred             EC--CCEEEEEEeCCcEEEE
Confidence            54  3455555556666554

...

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.71  E-value=5.8  Score=47.84  Aligned_cols=103  Identities=13%  Similarity=0.075  Sum_probs=67.4

Q ss_pred             CCCCEEEEEe-CCeEEEEEcCCC-----------C------CcceEEEeecCCCceEEEEEe--CCCCEEEEEEcCCeEE
Q 003271          732 TSGEYLASVS-DELVRVWSIGSG-----------S------KGECIHELSCTGNKFHSCVFH--PTFPSLLVIGCYETLE  791 (835)
Q Consensus       732 pdg~~Lasgs-Dg~I~IwDl~t~-----------~------~~~~i~~l~~~~~~V~sv~fs--pdg~~L~sgs~dg~I~  791 (835)
                      -+..+|++|. ||.|.+|.+.+-           .      ..++...+. ....++.++++  ...++||+++....|.
T Consensus       112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~rlIAVSsNs~~VT  190 (717)
T PF08728_consen  112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSRLIAVSSNSQEVT  190 (717)
T ss_pred             CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcceEEEEecCCceEE
Confidence            3456666666 999999976321           0      011222222 34578999998  7788888888777776


Q ss_pred             EEEcCC--CcEE--EeccCCCCeeEEEEeCCC---C---EEEEEECCCcEEEeC
Q 003271          792 LWNMTE--NKTL--TLSAHDKLVSSLAASTVN---G---MVASASHDKCVKIWK  835 (835)
Q Consensus       792 IwDl~~--~~~~--~l~~h~~~V~~la~spdg---~---~LaSgs~DG~V~IWd  835 (835)
                      ||-...  .+..  ....|...|-+|+|-++.   .   +|++++-.|.|.+|+
T Consensus       191 VFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~  244 (717)
T PF08728_consen  191 VFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK  244 (717)
T ss_pred             EEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence            665433  2222  223467789999998754   2   788889999988874

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=90.68  E-value=1.5  Score=45.58  Aligned_cols=70  Identities=11%  Similarity=0.109  Sum_probs=52.3

Q ss_pred             eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE-------c-------CCCCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 003271          684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-------Q-------GHKNQVHSVCWNTSGEYLASVSDELVRVWS  749 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l-------~-------~h~~~I~sl~fspdg~~LasgsDg~I~IwD  749 (835)
                      ..+.+...+.++++.+.+|.+++||+.+.+.+..-       .       .....|..+.++.+|.-|++-++|..+.|+
T Consensus        14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~   93 (219)
T PF07569_consen   14 PVSFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYS   93 (219)
T ss_pred             ceEEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEec
Confidence            34445566778888888888888888877665432       1       245678888999999999988889999998


Q ss_pred             cCCC
Q 003271          750 IGSG  753 (835)
Q Consensus       750 l~t~  753 (835)
                      ..-+
T Consensus        94 ~~L~   97 (219)
T PF07569_consen   94 PDLG   97 (219)
T ss_pred             cccc
Confidence            7654

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.68  E-value=17  Score=37.12  Aligned_cols=169  Identities=9%  Similarity=0.062  Sum_probs=87.3

Q ss_pred             CCCEEEEEeC--CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeecCCCC
Q 003271          566 DGKLLATGGH--DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTT  642 (835)
Q Consensus       566 dg~~Lasgs~--Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~  642 (835)
                      +|.++.+.+.  ...|++||+.+++.+..-.-....+..=-...-+.++ +-.-.+|...+||.++-+. +..+. ..+.
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~-lg~~~-y~Ge  132 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEE-LGRFS-YEGE  132 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhh-hcccc-cCCc
Confidence            4566666553  3479999999998876543322111111111112222 2233578888999887553 32222 2233


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-----C---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-----G---ATQMRFQPRLGRILAAAIENYISILDVETQVC  714 (835)
Q Consensus       643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-----~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~  714 (835)
                      =+.++.  +++.++ .++...++++-|.++......+..     +   ...+.|. +|..++-.-.+..|...|..+++.
T Consensus       133 GWgLt~--d~~~Li-msdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGrV  208 (262)
T COG3823         133 GWGLTS--DDKNLI-MSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPDSGRV  208 (262)
T ss_pred             ceeeec--CCcceE-eeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCCCCcE
Confidence            455543  344455 444455677777765544333221     1   2222222 222222233445666667777766


Q ss_pred             EEEEc------------CCCCCeEEEEEcCCC-CEEEEE
Q 003271          715 RLKLQ------------GHKNQVHSVCWNTSG-EYLASV  740 (835)
Q Consensus       715 i~~l~------------~h~~~I~sl~fspdg-~~Lasg  740 (835)
                      +..+.            .|..-...+++.|++ +++++|
T Consensus       209 ~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         209 VAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            65443            244456788888887 444444

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=90.66  E-value=20  Score=40.45  Aligned_cols=39  Identities=15%  Similarity=0.183  Sum_probs=20.9

Q ss_pred             EEEEEcCCCcEEEeccCC-CCeeEEEEeCCCCEEEEEECC
Q 003271          790 LELWNMTENKTLTLSAHD-KLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       790 I~IwDl~~~~~~~l~~h~-~~V~~la~spdg~~LaSgs~D  828 (835)
                      +.+||.++.+...+..-. ..-...+..-++++++.|+..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQGLAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCCccceEEEEeCCEEEEEcCCC
Confidence            568898877654322111 111222344467788888753

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=90.64  E-value=38  Score=39.18  Aligned_cols=57  Identities=19%  Similarity=0.183  Sum_probs=39.2

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE--EEEec-----cCCCCeEEEEECCCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE-----EHTQWITDVRFSPSL  609 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--i~~l~-----~h~~~V~sv~fspdg  609 (835)
                      ..-..-+.|+|.|||++|++--..|.|++++..++..  +..+.     ...+....|+|+|+-
T Consensus        27 ~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        27 SGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             CCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3445578999999998777765569999998655432  22221     125678999999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=90.32  E-value=33  Score=37.92  Aligned_cols=100  Identities=12%  Similarity=0.106  Sum_probs=60.8

Q ss_pred             ceEEEEecCCCEEEEEEcC------CcEEEEECCCCeEEEEEc---------------CCCCCeEEEEEcCCCCEEEEEe
Q 003271          683 ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQ---------------GHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       683 i~~l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~---------------~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      ...+++.+++.++++.-.+      ..|+.++.. ++.+..+.               .....+.+|+++|+|..|+++.
T Consensus        87 ~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~  165 (326)
T PF13449_consen   87 PEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM  165 (326)
T ss_pred             hhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence            4467786666655555556      678888876 54443331               1345688999999999666553


Q ss_pred             ------CC--e-------EEEEEcCCCC----CcceEEEeec-----CCCceEEEEEeCCCCEEEE
Q 003271          742 ------DE--L-------VRVWSIGSGS----KGECIHELSC-----TGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       742 ------Dg--~-------I~IwDl~t~~----~~~~i~~l~~-----~~~~V~sv~fspdg~~L~s  783 (835)
                            |+  .       ++|+.+....    .......+..     ....+..+.+.+++++|+.
T Consensus       166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence                  22  2       5555554322    1122333332     4677899999999986654

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=90.30  E-value=6.5  Score=44.96  Aligned_cols=99  Identities=14%  Similarity=0.085  Sum_probs=57.6

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE
Q 003271          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV  678 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~  678 (835)
                      .|..|..++.|..++.++.+|.+.++=...-. .-..+......|.|=.|.-+ ..++ +.+.  .              
T Consensus       105 eV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG-~~s~~eDgk~~v~CRt~~i~-~~~f-tss~--~--------------  165 (741)
T KOG4460|consen  105 EVYQVLLSPTGSHVALIGIKGLMVMELPKRWG-KNSEFEDGKSTVNCRTTPVA-ERFF-TSST--S--------------  165 (741)
T ss_pred             EEEEEEecCCCceEEEecCCeeEEEEchhhcC-ccceecCCCceEEEEeeccc-ceee-ccCC--c--------------
Confidence            47778889999999999999965554322111 12233333334555444332 2222 1111  1              


Q ss_pred             eecCceEEEEecCC---CEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271          679 FKSGATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKL  718 (835)
Q Consensus       679 ~~~~i~~l~fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~l  718 (835)
                        -.+..++|+|+.   ..++.-+.|+.|++||+...+.++..
T Consensus       166 --ltl~Qa~WHP~S~~D~hL~iL~sdnviRiy~lS~~telylq  206 (741)
T KOG4460|consen  166 --LTLKQAAWHPSSILDPHLVLLTSDNVIRIYSLSEPTELYLQ  206 (741)
T ss_pred             --eeeeeccccCCccCCceEEEEecCcEEEEEecCCcchhhcc
Confidence              123456677764   67888888889999988876665443

>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins

Probab=89.98  E-value=19  Score=41.23  Aligned_cols=30  Identities=13%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          768 KFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      .|..++..+..+.+++.+.++.|.+|++..
T Consensus       191 ~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~  220 (422)
T PF08801_consen  191 KIVQVAVDPSRRLLYTLTSDGSIQVWDLGP  220 (422)
T ss_dssp             -EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred             ceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence            477777777778888888888888888864

RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=89.90  E-value=32  Score=37.24  Aligned_cols=215  Identities=12%  Similarity=0.066  Sum_probs=120.3

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEecC------CCCceeEEeec-----CCCCeEEEEEcCCCC-----------cEE
Q 003271          599 WITDVRFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTFTG-----HSTTVMSLDFHPSKE-----------DLL  656 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~------t~~~~~~~~~~-----h~~~V~sl~fsp~g~-----------~ll  656 (835)
                      .-+.|+|+|.+.+.++....+...+||..      .....+..+..     .....+.+.|+....           -.+
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F  103 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF  103 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence            35789999998888888788999999987      11111222221     224567777764322           235


Q ss_pred             EEEeCCCcEEEEECCCCee-----eeEee----cC-ceEEEEec--CCCEEEEEEc-CCcEEEEECCCCeEEE--EEcCC
Q 003271          657 CSCDNNSEIRYWSINNGSC-----AGVFK----SG-ATQMRFQP--RLGRILAAAI-ENYISILDVETQVCRL--KLQGH  721 (835)
Q Consensus       657 ~sgs~Dg~I~iwDl~s~~~-----~~~~~----~~-i~~l~fsp--~~~~ll~~s~-dg~I~IwDl~t~~~i~--~l~~h  721 (835)
                      +.+++||+|.-|...-+..     ...+.    +. ...+++..  .+++|+++.. .++|.|||-.-.....  .+...
T Consensus       104 if~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~DP  183 (336)
T TIGR03118       104 LFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFIDP  183 (336)
T ss_pred             EEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccCC
Confidence            6788999999998643222     11222    11 33444443  3566666554 6889999865332211  11100


Q ss_pred             C----------------CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--cCCCceEEEEEeC------
Q 003271          722 K----------------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHP------  776 (835)
Q Consensus       722 ~----------------~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--~~~~~V~sv~fsp------  776 (835)
                      .                -.|+...-.++.+.=+.+. -|.|-+||+.-    ..++.+.  +.-...+.++..|      
T Consensus       184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G----~l~~r~as~g~LNaPWG~a~APa~FG~~  259 (336)
T TIGR03118       184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG----QLLRRVASSGRLNAPWGLAIAPESFGSL  259 (336)
T ss_pred             CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC----cEEEEeccCCcccCCceeeeChhhhCCC
Confidence            0                0011111122222222222 46899999765    3555442  2234456666654      


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC------CCeeEEEEeC
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHD------KLVSSLAAST  817 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~------~~V~~la~sp  817 (835)
                      .+..|+---.||+|..||..+++.+ .+....      ..++.|+|..
T Consensus       260 sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn  307 (336)
T TIGR03118       260 SGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN  307 (336)
T ss_pred             CCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence            3555555556999999999988866 333322      3467888865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=89.86  E-value=3.5  Score=46.88  Aligned_cols=135  Identities=13%  Similarity=0.084  Sum_probs=88.0

Q ss_pred             CCCEEEE-EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC--------CCEEEEEeCCeEEEEEcCCCCCcceEEE
Q 003271          691 RLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS--------GEYLASVSDELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       691 ~~~~ll~-~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd--------g~~LasgsDg~I~IwDl~t~~~~~~i~~  761 (835)
                      +...|+. +.....++-.|++.|+.+....-|...  -+.|.|+        ...|+..++..|.-.|.+-......+..
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            3344433 334567888899999999888866654  4667764        3457777777777777665432112222


Q ss_pred             ee--cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271          762 LS--CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       762 l~--~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~D  828 (835)
                      ..  .......+..- ....+|++++..|.|++||--..... .+.+....|..|..+.+|++|++.|..
T Consensus       556 sKdY~tKn~Fss~~t-TesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         556 SKDYKTKNKFSSGMT-TESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ehhcccccccccccc-ccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc
Confidence            11  11222333333 34458999999999999996554433 667778899999999999988777654

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=89.60  E-value=48  Score=38.77  Aligned_cols=141  Identities=12%  Similarity=0.052  Sum_probs=72.1

Q ss_pred             CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC---CCeEEEEEcCC
Q 003271          575 HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS---TTVMSLDFHPS  651 (835)
Q Consensus       575 ~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~---~~V~sl~fsp~  651 (835)
                      ..+.+.++|. .|.++..+.........+.+.++|.+++...  ..++.+|+....  +..+....   ..-..+...|+
T Consensus       126 ~~~~~~~iD~-~G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G~v--~~~~~l~~~~~~~HHD~~~l~n  200 (477)
T PF05935_consen  126 SSSYTYLIDN-NGDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLGKV--IWEYDLPGGYYDFHHDIDELPN  200 (477)
T ss_dssp             BEEEEEEEET-TS-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT--E--EEEEE--TTEE-B-S-EEE-TT
T ss_pred             CCceEEEECC-CccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCCCE--EEeeecCCcccccccccEECCC
Confidence            4556667774 4455555433222222267788888887665  778888887432  22222111   11245667788


Q ss_pred             CCcEEEEEe-------C-----CCcEEEEECCCCeeeeEee------------------------------cCceEEEEe
Q 003271          652 KEDLLCSCD-------N-----NSEIRYWSINNGSCAGVFK------------------------------SGATQMRFQ  689 (835)
Q Consensus       652 g~~ll~sgs-------~-----Dg~I~iwDl~s~~~~~~~~------------------------------~~i~~l~fs  689 (835)
                      |+.++++..       .     .-.|..+| .+|+.+..+.                              .++.++.+.
T Consensus       201 Gn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd  279 (477)
T PF05935_consen  201 GNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYD  279 (477)
T ss_dssp             S-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEE
T ss_pred             CCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEe
Confidence            876555541       0     11344455 5555443321                              236788999


Q ss_pred             cCCCEEEEEEcC-CcEEEEECCCCeEEEEEcCC
Q 003271          690 PRLGRILAAAIE-NYISILDVETQVCRLKLQGH  721 (835)
Q Consensus       690 p~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h  721 (835)
                      +.++.|++.+.. ..|..+|.++++....+..+
T Consensus       280 ~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~  312 (477)
T PF05935_consen  280 PSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP  312 (477)
T ss_dssp             TTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred             CCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence            977888888876 48999999999888877654

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PRK05560 DNA gyrase subunit A; Validated

Probab=89.42  E-value=55  Score=40.94  Aligned_cols=229  Identities=9%  Similarity=0.011  Sum_probs=0.0

Q ss_pred             CCCCEEEEEECCCeEEEEecCCCCceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEE--EECCCCe---
Q 003271          607 PSLSRLATSSADRTVRVWDTENPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRY--WSINNGS---  674 (835)
Q Consensus       607 pdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~-------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i--wDl~s~~---  674 (835)
                      ++...+++-+.+|.|+.-.+.+.......-.+       ..+.+..+........+++..+....+++  +++....   
T Consensus       496 ~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~  575 (805)
T PRK05560        496 PEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTA  575 (805)
T ss_pred             CCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCC


Q ss_pred             --------eeeEeecCceEEEEec---CCCEEEEEEcCCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          675 --------CAGVFKSGATQMRFQP---RLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       675 --------~~~~~~~~i~~l~fsp---~~~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                              ....-...+..+....   +...++..+.+|.++-.++..       +.....+.....-+..+..+.+..+
T Consensus       576 ~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~d~l  655 (805)
T PRK05560        576 RGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGDDDI  655 (805)
T ss_pred             CCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCCCEE


Q ss_pred             EEEEeCCeEEEEEcCC------CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc----------E
Q 003271          737 LASVSDELVRVWSIGS------GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK----------T  800 (835)
Q Consensus       737 LasgsDg~I~IwDl~t------~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~----------~  800 (835)
                      ++....|.+..+.+..      ...+..+..+.....-+..+.+.++..+++..+..|.++...+..-.          .
T Consensus       656 ll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG~~~  735 (805)
T PRK05560        656 LLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKGVIT  735 (805)
T ss_pred             EEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCcEEe


Q ss_pred             EEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          801 LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       801 ~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.+....+.+..+........++..+.+|.+..++
T Consensus       736 lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~  770 (805)
T PRK05560        736 IKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTR  770 (805)
T ss_pred             eeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEE

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=89.13  E-value=0.33  Score=59.21  Aligned_cols=6  Identities=33%  Similarity=0.296  Sum_probs=3.0

Q ss_pred             cccccc
Q 003271          280 QQQKSL  285 (835)
Q Consensus       280 ~~~~~~  285 (835)
                      +|.+||
T Consensus      2018 ~q~~~~ 2023 (2131)
T KOG4369|consen 2018 AQQSFM 2023 (2131)
T ss_pred             cCCCCC
Confidence            345555

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=89.05  E-value=12  Score=35.47  Aligned_cols=115  Identities=12%  Similarity=0.094  Sum_probs=71.3

Q ss_pred             EEEECCCCCEEEEEECCCeEEEEecCCCCc-------eeEEeecCCCCeEEEEEcC----CCCcEEEEEeCCCcEEEEEC
Q 003271          602 DVRFSPSLSRLATSSADRTVRVWDTENPDY-------SLRTFTGHSTTVMSLDFHP----SKEDLLCSCDNNSEIRYWSI  670 (835)
Q Consensus       602 sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-------~~~~~~~h~~~V~sl~fsp----~g~~ll~sgs~Dg~I~iwDl  670 (835)
                      .-+|......|+.++.-|.|.|++......       .+. +..-...|++|+--+    ++..+|+.|+ ...|..||+
T Consensus         3 iGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~-~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV   80 (136)
T PF14781_consen    3 IGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDIS-FLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV   80 (136)
T ss_pred             EEEeCCCceeEEEEecCCEEEEECCCccccccccccCcee-EEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence            445666666788888889999998764321       122 233456677776543    3355666666 678999999


Q ss_pred             CCCeee--eEeecCceEEEEecC---CCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271          671 NNGSCA--GVFKSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLKL  718 (835)
Q Consensus       671 ~s~~~~--~~~~~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t~~~i~~l  718 (835)
                      .....+  +.+..++.++.+-.-   ...++..+.+..|.-||.+-.+...+.
T Consensus        81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtV  133 (136)
T PF14781_consen   81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTV  133 (136)
T ss_pred             ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEe
Confidence            876543  455566777665322   234555555567777777665555544

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=88.98  E-value=6  Score=45.08  Aligned_cols=141  Identities=12%  Similarity=0.113  Sum_probs=88.7

Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCC-------CEEEEEEcCCcEEEEECCCC-eEEE--EEc
Q 003271          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRL-------GRILAAAIENYISILDVETQ-VCRL--KLQ  719 (835)
Q Consensus       651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~-------~~ll~~s~dg~I~IwDl~t~-~~i~--~l~  719 (835)
                      +...++..|+....++--|++.|+.+..+..+ -..+.|.|..       ..-++|-.+..|.-.|.+-. ..+.  .++
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~esK  557 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVESK  557 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCccceEEeecccceEEecccccCCceeeeeeh
Confidence            44445556667778888999999998887744 2256677753       23556667777777776632 2222  111


Q ss_pred             C--CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          720 G--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       720 ~--h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      .  ......|..-. ..-||++++ .|.|++||--..   .....+.+.+..|..+..+.+|.+|++.+.. .|.+.|+.
T Consensus       558 dY~tKn~Fss~~tT-esGyIa~as~kGDirLyDRig~---rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~~  632 (776)
T COG5167         558 DYKTKNKFSSGMTT-ESGYIAAASRKGDIRLYDRIGK---RAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDVP  632 (776)
T ss_pred             hccccccccccccc-cCceEEEecCCCceeeehhhcc---hhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEecc
Confidence            1  12223333322 334677777 899999996443   2333455667889999999999987776654 66676763

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=88.84  E-value=2.4  Score=44.09  Aligned_cols=61  Identities=16%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             EeCCCCEEEEEEcCCeEEEEEcCCCcEEE--------ec-------cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          774 FHPTFPSLLVIGCYETLELWNMTENKTLT--------LS-------AHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       774 fspdg~~L~sgs~dg~I~IwDl~~~~~~~--------l~-------~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +...+.+|++.+.+|.+++||+.+++.+.        +.       .....|..+.++.+|.-|++-+ +|..+.|+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~   93 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS   93 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence            45578899999999999999999988651        11       3556788999998888777655 57778775

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.36  E-value=13  Score=44.38  Aligned_cols=165  Identities=12%  Similarity=0.167  Sum_probs=80.7

Q ss_pred             CcEEEEECCCCeeeeEe---ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE---EEcCCCCCeEEEEEcCCCCE
Q 003271          663 SEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       663 g~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~---~l~~h~~~I~sl~fspdg~~  736 (835)
                      -.|+||++. |..+..+   .+.+-.+.|+.+ ..|++...+|.+++|++-......   -+......|..+.|..+|-.
T Consensus        64 ~~I~If~~s-G~lL~~~~w~~~~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~ie~~svg~e~~~~~I~ec~~f~~GVa  141 (829)
T KOG2280|consen   64 PYIRIFNIS-GQLLGRILWKHGELIGMGWSDD-EELICVQKDGTVHVYGLLGEFIESNSVGFESQMSDIVECRFFHNGVA  141 (829)
T ss_pred             eeEEEEecc-ccchHHHHhcCCCeeeecccCC-ceEEEEeccceEEEeecchhhhcccccccccccCceeEEEEecCceE
Confidence            356667665 3332221   234566677765 668888999999999986432221   11223344665656567766


Q ss_pred             EEEEeCCeEEEEEcCCCCCcceEEEeec---CCCceEEEE-EeCCCC-E-EEEEEcCCeEEEEEcC--CCcEEEeccCCC
Q 003271          737 LASVSDELVRVWSIGSGSKGECIHELSC---TGNKFHSCV-FHPTFP-S-LLVIGCYETLELWNMT--ENKTLTLSAHDK  808 (835)
Q Consensus       737 LasgsDg~I~IwDl~t~~~~~~i~~l~~---~~~~V~sv~-fspdg~-~-L~sgs~dg~I~IwDl~--~~~~~~l~~h~~  808 (835)
                      +.+.++..+.+.++...    .+.+...   ......+-. +.|... . ++-....-...++-..  ......+.....
T Consensus       142 vlt~~g~v~~i~~~~~~----~~~~~~diP~~~~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~  217 (829)
T KOG2280|consen  142 VLTVSGQVILINGVEEP----KLRKMPDIPYNELPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNS  217 (829)
T ss_pred             EEecCCcEEEEcCCCcc----hhhhCCCCCCccCCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCCCCc
Confidence            65555555555555442    1111111   111111111 112111 1 1111100011112222  222223333345


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          809 LVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       809 ~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .+..+.+||+.++|+--..+|.|.+
T Consensus       218 ~~~ki~VS~n~~~laLyt~~G~i~~  242 (829)
T KOG2280|consen  218 SVVKISVSPNRRFLALYTETGKIWV  242 (829)
T ss_pred             eEEEEEEcCCcceEEEEecCCcEEE
Confidence            6778888988888888888887765

>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast)

Probab=88.27  E-value=67  Score=38.72  Aligned_cols=155  Identities=12%  Similarity=0.145  Sum_probs=88.5

Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee--EEeecCC------CCeEEEEEcCCCCcEEEEEe-CC--CcE
Q 003271          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL--RTFTGHS------TTVMSLDFHPSKEDLLCSCD-NN--SEI  665 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~--~~~~~h~------~~V~sl~fsp~g~~ll~sgs-~D--g~I  665 (835)
                      .+.|..|.|..+++.+++...+|.|.+||........  ..-..+.      ..|.........+.+++.+. .+  -.+
T Consensus       129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~~~~~~v~ys~fv~~~~~~~~~~~ll~v~~~~~~k~~y  208 (670)
T PF10395_consen  129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKLKSSINVSYSKFVNDFELENGKDLLLTVSQLSNSKLSY  208 (670)
T ss_pred             ccceEEEEEecCCCEEEEEEcCCcEEEEeccccccccccccccccccceehhhhhcccccccCCceEEEEEEcCCCcEEE
Confidence            5679999999999999999999999999993322111  1111111      12222221112233444443 12  356


Q ss_pred             EEEEC--CCCeeeeEe----e-cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC-----CC-CCeEEEEEcC
Q 003271          666 RYWSI--NNGSCAGVF----K-SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG-----HK-NQVHSVCWNT  732 (835)
Q Consensus       666 ~iwDl--~s~~~~~~~----~-~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-----h~-~~I~sl~fsp  732 (835)
                      +++.+  ....+...-    . .......|....+.++.- .++.|.+|++...+...++.-     .. ..+.++. .|
T Consensus       209 kL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~~G~LY~l-~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl~-~~  286 (670)
T PF10395_consen  209 KLISLSNESSSIFELSSTILENFGLEDSKFCYQFGKLYQL-SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSLK-PP  286 (670)
T ss_pred             EEEEeccCCcceEEeehheeccCCcccceEEEeCCEEEEE-eCCEEEEEEcCCceEEEEEEechhhccccccceEee-cC
Confidence            77777  322222211    1 112333444445666655 778999999988766655432     11 2344443 34


Q ss_pred             CCCEEEEEeCCeEEEEEcCCC
Q 003271          733 SGEYLASVSDELVRVWSIGSG  753 (835)
Q Consensus       733 dg~~LasgsDg~I~IwDl~t~  753 (835)
                      ..+.++.+.++.|++.|+.-.
T Consensus       287 s~nRvLLs~~nkIyLld~~~~  307 (670)
T PF10395_consen  287 SPNRVLLSVNNKIYLLDLKFE  307 (670)
T ss_pred             CCCeEEEEcCCEEEEEeehhh
Confidence            555666677889999998754

It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.15  E-value=5  Score=42.29  Aligned_cols=129  Identities=16%  Similarity=0.135  Sum_probs=72.9

Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEe---ecCCCceEEEEEeC
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHP  776 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l---~~~~~~V~sv~fsp  776 (835)
                      -.+||+.+++.............+-.+.+||++|.+|+  +|  .+++|+...........+.   -......-++..-+
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            34677777654432222222333345778999999988  44  6888886541110111111   12234445566678


Q ss_pred             CCCEEEEEEcCC-eEEEEEcCC--CcEEEe--cc------CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          777 TFPSLLVIGCYE-TLELWNMTE--NKTLTL--SA------HDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       777 dg~~L~sgs~dg-~I~IwDl~~--~~~~~l--~~------h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      ||+.|++|+... +..+|.-..  .....+  ..      ....---+...|+|++++.+..+..|.
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s~i~  194 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGSIIY  194 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCcEEE
Confidence            999999999886 566666532  122211  11      111122456679999999988776554

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=87.97  E-value=83  Score=39.45  Aligned_cols=163  Identities=13%  Similarity=0.121  Sum_probs=85.6

Q ss_pred             EEEEECCCCeeeeEeecC-------ceEEEEecCCCE-EE-EEEc-----------CCcEEEEECCC-CeEEEEEc--CC
Q 003271          665 IRYWSINNGSCAGVFKSG-------ATQMRFQPRLGR-IL-AAAI-----------ENYISILDVET-QVCRLKLQ--GH  721 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~~-------i~~l~fsp~~~~-ll-~~s~-----------dg~I~IwDl~t-~~~i~~l~--~h  721 (835)
                      |+++|..+++.+..+...       +..+.|+..... ++ ++..           +|.++.|++-. ++.+.-+.  .-
T Consensus       855 I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~~  934 (1205)
T KOG1898|consen  855 IRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTEI  934 (1205)
T ss_pred             EEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccCC
Confidence            566666666555444322       334445544433 22 3221           34466666543 23221111  12


Q ss_pred             CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE--EEEcCCCc
Q 003271          722 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE--LWNMTENK  799 (835)
Q Consensus       722 ~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~--IwDl~~~~  799 (835)
                      .+.|.++  .|...++++|-...+++||+...+.. ...++......|..+.+  .+..|++|.....|.  .|+-.++.
T Consensus       935 ~~~v~Ai--~~f~~~~LagvG~~l~~YdlG~K~lL-Rk~e~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~~n~ 1009 (1205)
T KOG1898|consen  935 PGPVGAI--CPFQGRVLAGVGRFLRLYDLGKKKLL-RKCELKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRREDNQ 1009 (1205)
T ss_pred             CccceEE--eccCCEEEEecccEEEEeeCChHHHH-hhhhhccCceEEEEEee--cceEEEEeeccceEEEEEEecCCCe
Confidence            3344444  46666888888899999999775221 11112223445666665  445688887766544  45555566


Q ss_pred             EEEecc--CCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          800 TLTLSA--HDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       800 ~~~l~~--h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .+.+..  ....|+++.+- |...+|.+..=|.+.+
T Consensus      1010 l~~fadD~~pR~Vt~~~~l-D~~tvagaDrfGNi~~ 1044 (1205)
T KOG1898|consen 1010 LIVFADDPVPRHVTALELL-DYDTVAGADRFGNIAV 1044 (1205)
T ss_pred             EEEEeCCCccceeeEEEEe-cCCceeeccccCcEEE
Confidence            654432  23456666654 4445666666666554

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.77  E-value=4.6  Score=50.92  Aligned_cols=137  Identities=10%  Similarity=0.132  Sum_probs=79.8

Q ss_pred             EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE--------cCCC-CEEEEEeCCeEEEEEcCCCCCc----c--eEEEe
Q 003271          698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCW--------NTSG-EYLASVSDELVRVWSIGSGSKG----E--CIHEL  762 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f--------spdg-~~LasgsDg~I~IwDl~t~~~~----~--~i~~l  762 (835)
                      .+.|+.+.+|+.+++.....+.+....|..|..        -|.= ..|+.++--.|.++-+.-....    .  ....+
T Consensus        95 iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i  174 (1311)
T KOG1900|consen   95 ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKI  174 (1311)
T ss_pred             EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceee
Confidence            345677777777776555556555555555533        1221 2344444445555544322110    1  11233


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EEcCCC-------c--------------EEEec-cCCCCeeEEEEeCC
Q 003271          763 SCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTEN-------K--------------TLTLS-AHDKLVSSLAASTV  818 (835)
Q Consensus       763 ~~~~~~V~sv~fspdg~~L~sgs~dg~I~I--wDl~~~-------~--------------~~~l~-~h~~~V~~la~spd  818 (835)
                      ...+..|+++....+|+ |+.+|.||.|+=  |...++       +              ...+. .+.++|..|++...
T Consensus       175 ~~dg~~V~~I~~t~nGR-IF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~S  253 (1311)
T KOG1900|consen  175 SVDGVSVNCITYTENGR-IFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNS  253 (1311)
T ss_pred             ecCCceEEEEEeccCCc-EEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccc
Confidence            34466788888888887 555555664432  222211       0              11233 56779999999888


Q ss_pred             CCEEEEEECCCcEEEeC
Q 003271          819 NGMVASASHDKCVKIWK  835 (835)
Q Consensus       819 g~~LaSgs~DG~V~IWd  835 (835)
                      ..++.+-+..|+|.+||
T Consensus       254 R~IlY~lsek~~v~~Y~  270 (1311)
T KOG1900|consen  254 RNILYVLSEKGTVSAYD  270 (1311)
T ss_pred             cceeeeeccCceEEEEE
Confidence            88999999999999996

>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]

Probab=87.55  E-value=75  Score=38.50  Aligned_cols=260  Identities=14%  Similarity=0.060  Sum_probs=0.0

Q ss_pred             CEEEEEEeCCCCEEEEEeCC---------CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCe--EEEEe
Q 003271          557 KVESCHFSPDGKLLATGGHD---------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--VRVWD  625 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~D---------g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~--I~IWD  625 (835)
                      .+....+++++..++.....         ..+.+.|...    .....+...+..+.|+|++..++..+.++.  ..+|-
T Consensus        14 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~----~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~l~l   89 (620)
T COG1506          14 RVSDPRVSPPGGRLAYILTGLDFLKPLYKSSLWVSDGKT----VRLLTFGGGVSELRWSPDGSVLAFVSTDGGRVAQLYL   89 (620)
T ss_pred             cccCcccCCCCceeEEeeccccccccccccceEEEeccc----ccccccCCcccccccCCCCCEEEEEeccCCCcceEEE


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEE---------EEe-----------------CCCcEEEEECC-CCeeeeE
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC---------SCD-----------------NNSEIRYWSIN-NGSCAGV  678 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~---------sgs-----------------~Dg~I~iwDl~-s~~~~~~  678 (835)
                      +... .   .+..+...|....|++.+..+++         .+.                 ....+.+.|.. .......
T Consensus        90 ~~~~-g---~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~l~~~d~~~~~~~~~~  165 (620)
T COG1506          90 VDVG-G---LITKTAFGVSDARWSPDGDRIAFLTAEGASKRDGGDHLFVDRLPVWFDGRGGERSDLYVVDIESKLIKLGL  165 (620)
T ss_pred             EecC-C---ceeeeecccccceeCCCCCeEEEEecccccccCCceeeeecccceeecCCCCcccceEEEccCcccccccC


Q ss_pred             eecCceEEEEecCCCEEEEEEcCCc-------EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---C-C----
Q 003271          679 FKSGATQMRFQPRLGRILAAAIENY-------ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---D-E----  743 (835)
Q Consensus       679 ~~~~i~~l~fsp~~~~ll~~s~dg~-------I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---D-g----  743 (835)
                      ....+....+++++..++....+..       ..++.. ....+..+......+..+.|.++|+.++..+   + +    
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~gk~~~~~~~~~~~~~~~~  244 (620)
T COG1506         166 GNLDVVSFATDGDGRLVASIRLDDDADPWVTNLYVLIE-GNGELESLTPGEGSISKLAFDADGKSIALLGTESDRGLAEG  244 (620)
T ss_pred             CCCceeeeeeCCCCceeEEeeeccccCCceEeeEEEec-CCCceEEEcCCCceeeeeeeCCCCCeeEEeccCCccCcccc


Q ss_pred             -eEEEEEcCCCCCcceEEEeecCC--CceEEEEEeCCCCEEEEEEcC--CeEEEEEcCCCcEEEeccCCCCeeEEEEeCC
Q 003271          744 -LVRVWSIGSGSKGECIHELSCTG--NKFHSCVFHPTFPSLLVIGCY--ETLELWNMTENKTLTLSAHDKLVSSLAASTV  818 (835)
Q Consensus       744 -~I~IwDl~t~~~~~~i~~l~~~~--~~V~sv~fspdg~~L~sgs~d--g~I~IwDl~~~~~~~l~~h~~~V~~la~spd  818 (835)
                       .+.+++...+   +....+....  .....+.+.-++..++....+  +...++.+................-..|+.+
T Consensus       245 ~~~~~~~~~~~---~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~v~~f~~~  321 (620)
T COG1506         245 DFILLLDGELG---EVDGDLSSGDDTRGAWAVEGGLDGDGLLFIATDGGGSSPLFRVDDLGGGVEGLSGDDGGVPGFDVD  321 (620)
T ss_pred             ceEEEEecccc---ccceeeccCCcccCcHHhccccCCCcEEEEEecCCCceEEEEEeccCCceeeecCCCceEEEEeeC


Q ss_pred             CCEEEEEECC
Q 003271          819 NGMVASASHD  828 (835)
Q Consensus       819 g~~LaSgs~D  828 (835)
                      ++.++..-..
T Consensus       322 ~~~~~~~~s~  331 (620)
T COG1506         322 GRKLALAYSS  331 (620)
T ss_pred             CCEEEEEecC

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.54  E-value=28  Score=38.40  Aligned_cols=100  Identities=13%  Similarity=0.186  Sum_probs=60.7

Q ss_pred             CeEEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCcceE---EEe---------ecCCCceEEEEEeCCCCEEEEE
Q 003271          724 QVHSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECI---HEL---------SCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-D------g~I~IwDl~t~~~~~~i---~~l---------~~~~~~V~sv~fspdg~~L~sg  784 (835)
                      ...+|++.++|.++++.- +      ..|+.++.. +.....+   ..+         ......+-.++++|+|..|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            344677777888777766 6      678888765 3221111   011         1234568899999999977776


Q ss_pred             EcCC-------e-------EEE--EEcCC-CcE---E--Eecc-----CCCCeeEEEEeCCCCEEEE
Q 003271          785 GCYE-------T-------LEL--WNMTE-NKT---L--TLSA-----HDKLVSSLAASTVNGMVAS  824 (835)
Q Consensus       785 s~dg-------~-------I~I--wDl~~-~~~---~--~l~~-----h~~~V~~la~spdg~~LaS  824 (835)
                      ....       .       ++|  ||..+ +..   .  .+..     ....|..+.+.+++++|+.
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            5422       1       445  45544 211   1  2222     4567899999999987664

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.98  E-value=4.7  Score=50.90  Aligned_cols=202  Identities=14%  Similarity=0.181  Sum_probs=0.0

Q ss_pred             eCCCeEEEEEcCCCeEEEEeccCCCCeEEEE--------ECCCCCEEEEEECCCeEEEEecC--CCCceeEEeecC----
Q 003271          574 GHDKKAVLWCTESFTVKSTLEEHTQWITDVR--------FSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGH----  639 (835)
Q Consensus       574 s~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~--------fspdg~~Latgs~Dg~I~IWDl~--t~~~~~~~~~~h----  639 (835)
                      +-|+.+.+|+.+++.....+.+-...|..|.        |.|.=+++++.+.--.|.|+-+.  +.......+..+    
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee


Q ss_pred             --CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE
Q 003271          640 --STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  717 (835)
Q Consensus       640 --~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~  717 (835)
                        ...|.|+....+|+ ++++|-++   .+|.+.-...-.-+......++.+..---.++.+   .+.+.          
T Consensus       176 ~dg~~V~~I~~t~nGR-IF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs---~~~~~----------  238 (1311)
T KOG1900|consen  176 VDGVSVNCITYTENGR-IFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS---LLSVP----------  238 (1311)
T ss_pred             cCCceEEEEEeccCCc-EEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhh---hhcCC----------


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC---------------------ceEEEEEe
Q 003271          718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN---------------------KFHSCVFH  775 (835)
Q Consensus       718 l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~---------------------~V~sv~fs  775 (835)
                       ..+..+|..+..+..-.++.+-+ .++|.+||+.......+...-..+..                     .|..+.-.
T Consensus       239 -~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~~~~~~~i~~qa~~~~~~~~~s~f~~IvsI~~l~~~  317 (1311)
T KOG1900|consen  239 -GSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFVSVSRNYIDVQALSLKNPLDDSVFFSIVSISPLSAS  317 (1311)
T ss_pred             -CCCCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeeeehhHHHHHHHhhhccccCCCcccceeEEecccCcc


Q ss_pred             CCCCEEEEEEcCCeEEEE
Q 003271          776 PTFPSLLVIGCYETLELW  793 (835)
Q Consensus       776 pdg~~L~sgs~dg~I~Iw  793 (835)
                      ......+++-....|++|
T Consensus       318 es~~l~LvA~ts~GvRlY  335 (1311)
T KOG1900|consen  318 ESNDLHLVAITSTGVRLY  335 (1311)
T ss_pred             cccceeEEEEecCCeEEE

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=86.98  E-value=23  Score=42.64  Aligned_cols=269  Identities=13%  Similarity=0.143  Sum_probs=0.0

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec------CCCCCEEEEEEeCCCCEEEEEeCCCeEEE
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP------ASTSKVESCHFSPDGKLLATGGHDKKAVL  581 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~------gH~~~V~sl~fSpdg~~Lasgs~Dg~I~V  581 (835)
                      ...-|+.|.-|++.-.....+.           ++..--++..+.      .|-+.++.++|.-++--++....|.+   
T Consensus        34 ~c~l~s~d~Giev~~~s~~~d~-----------s~l~~F~ip~f~dkl~s~~hf~~~~~~~f~~~~gDii~~~~dp~---   99 (1243)
T COG5290          34 TCVLGSTDKGIEVAKESSIYDE-----------SGLKRFEIPFFPDKLLSFKHFHVLTFEYFLIDEGDIIHLVNDPT---   99 (1243)
T ss_pred             EeecCCCCCCeeeeeeccccch-----------hheeEeccCCcchHhhhhhhhhhhheeeEEecCCcEEEEEcCCC---


Q ss_pred             EEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC----CCeEEEEEc--------
Q 003271          582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS----TTVMSLDFH--------  649 (835)
Q Consensus       582 Wd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~----~~V~sl~fs--------  649 (835)
                         .....+..+..-...|...+|+.|...++....+..|.+++-.-.-.....+....    +.-..+.|-        
T Consensus       100 ---p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd~ise~~L~~~dl~ef~khi~VgWgkketqfrg  176 (1243)
T COG5290         100 ---PAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFDPISEYHLKKSDLVEFGKHIRVGWGKKETQFRG  176 (1243)
T ss_pred             ---cccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEeccccccchhhcchhHHHHhccceEeeecccchhccc


Q ss_pred             ----------------CCCCcEEEEEeCCCcEEEE--ECCCCeeeeEeecC-----ceE------------------EEE
Q 003271          650 ----------------PSKEDLLCSCDNNSEIRYW--SINNGSCAGVFKSG-----ATQ------------------MRF  688 (835)
Q Consensus       650 ----------------p~g~~ll~sgs~Dg~I~iw--Dl~s~~~~~~~~~~-----i~~------------------l~f  688 (835)
                                      ..|+  +........+..|  |..-...-+.-..+     +.+                  +.|
T Consensus       177 k~~raqlrdptmp~~vD~G~--l~avd~~k~~i~wrgD~~y~~v~r~Ee~prra~rvysreg~lds~sep~~g~e~~LSW  254 (1243)
T COG5290         177 KGARAQLRDPTMPYMVDYGD--LFAVDTNKKIIFWRGDTEYNLVGRSEERPRRAFRVYSREGQLDSASEPVTGMEHQLSW  254 (1243)
T ss_pred             cchhhhccCCCCcccccccc--eeEeeCCceEEEEccCcceeeecchhcccccceeeeccccccccccCCcccchhcccc


Q ss_pred             ecCCCEEEEEEcCCc-----EEEEECC---CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEE
Q 003271          689 QPRLGRILAAAIENY-----ISILDVE---TQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH  760 (835)
Q Consensus       689 sp~~~~ll~~s~dg~-----I~IwDl~---t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~  760 (835)
                      -|.|..+++...||.     |.++.-+   .|+.-.... ....+..++|+-....++.+..+.|.+|-..+-   ....
T Consensus       255 kpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~-~dEk~~~~~wn~~s~vlav~~~n~~~lwttkNy---hWYL  330 (1243)
T COG5290         255 KPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVG-CDEKAFLENWNLLSTVLAVAEGNLLKLWTTKNY---HWYL  330 (1243)
T ss_pred             ccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCC-chhhhhhhhhhHHHHHHHHhhcceEEEEEccce---EEEE


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          761 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       761 ~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      .....-..+.-+.|+|....-+.-...+.|...+.....
T Consensus       331 K~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k~  369 (1243)
T COG5290         331 KVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFSEKK  369 (1243)
T ss_pred             EEeecCCCcceeeeccccCcEEEEecCCeEEEEEeehhh

>PRK05560 DNA gyrase subunit A; Validated

Probab=86.90  E-value=94  Score=38.92  Aligned_cols=262  Identities=12%  Similarity=0.074  Sum_probs=0.0

Q ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec--------cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~--------~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      .+-++...+++-+.+|.|+.-++.+......-.        .-.+.+..+........|+..+..|.+....+..-...-
T Consensus       493 dlI~~E~v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~  572 (805)
T PRK05560        493 DLIPEEDVVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEAS  572 (805)
T ss_pred             hccCCCCEEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCC


Q ss_pred             -----------EEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCC-------CeeeeEeecC--ceEEEEecCC
Q 003271          634 -----------RTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINN-------GSCAGVFKSG--ATQMRFQPRL  692 (835)
Q Consensus       634 -----------~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iwDl~s-------~~~~~~~~~~--i~~l~fsp~~  692 (835)
                                 ..+.....-|.++.+... ....++..+.+|.|+--++..       +.....++.+  +..+......
T Consensus       573 ~~~~G~~i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke~D~lv~v~~~~~~  652 (805)
T PRK05560        573 RTARGRPIVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDEGDELIGVRLTDGD  652 (805)
T ss_pred             cCCCCeEHHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCCCCEEEEEEEeCCC


Q ss_pred             CEEEEEEcCCcEEEEECC---------CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEc------CCCCCc
Q 003271          693 GRILAAAIENYISILDVE---------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI------GSGSKG  756 (835)
Q Consensus       693 ~~ll~~s~dg~I~IwDl~---------t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl------~t~~~~  756 (835)
                      ..+++.+..|.+..+.+.         .|.....+.....-+..+.+.+++.+++..+ .|.++...+      +.+..+
T Consensus       653 d~lll~T~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~~~~~~il~vTk~G~iKr~~l~e~~~~~R~~kG  732 (805)
T PRK05560        653 DDILLATKNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVREDSQEILTVTENGYGKRTPVSEYRLQGRGGKG  732 (805)
T ss_pred             CEEEEEECCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEcCCCcEEEEEEeCCeEEEEEHHHhhccCCCCCc


Q ss_pred             ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEE
Q 003271          757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASA  825 (835)
Q Consensus       757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSg  825 (835)
                      .....+......+..+........+++.+.+|.+..++..  .+.........|..+.+..++..+...
T Consensus       733 ~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~--eI~~~gR~a~GVk~I~L~~~D~V~~~~  799 (805)
T PRK05560        733 VITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVS--EISITGRNTQGVRLIRLDEGDKVVSVA  799 (805)
T ss_pred             EEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHH--HCCccccCCCCeeeEecCCCCEEEEEE

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	835
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		4e-24
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		1e-20
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		2e-20
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-20
2gnq_A	336	Structure Of Wdr5 Length = 336		2e-20
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-20
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-20
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		2e-20
2h9l_A	329	Wdr5delta23 Length = 329		2e-20
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-20
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		3e-20
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		3e-20
2g99_A	308	Structural Basis For The Specific Recognition Of Me		3e-20
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		3e-20
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		4e-20
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		7e-20
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		2e-19
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-19
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		3e-19
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		3e-16
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		5e-16
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		2e-13
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		3e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		2e-12
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		3e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		3e-12
2hes_X	330	Cytosolic Iron-sulphur Assembly Protein- 1 Length =		2e-07
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		8e-04
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		9e-11
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-11
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		2e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-10
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-06
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		5e-10
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		4e-07
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		9e-10
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		4e-09
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		4e-09
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		6e-09
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		7e-09
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		8e-09
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		8e-09
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		8e-09
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		1e-08
4ggd_A	431	Structural Analysis Of Human Cdc20 Supports Multisi		2e-05
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-08
4gga_A	420	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-05
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		3e-08
4ggc_A	318	Structural Analysis Of Human Cdc20 Supports Multi-S		2e-04
3cfs_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		5e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		6e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		9e-06
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		7e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		8e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-06
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		1e-05
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-06
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		1e-05
3cfv_B	414	Structural Basis Of The Interaction Of Rbap46RBAP48		2e-06
2yba_A	422	Crystal Structure Of Nurf55 In Complex With Histone		2e-06
3c99_A	432	Structural Basis Of Histone H4 Recognition By P55 L		2e-06
2xyi_A	430	Crystal Structure Of Nurf55 In Complex With A H4 Pe		2e-06
3gfc_A	425	Crystal Structure Of Histone-Binding Protein Rbbp4		3e-06
3jrp_A	379	Sec13 With Nup145c (Aa109-179) Insertion Blade Leng		7e-06
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		1e-05
3jro_A	753	Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice		1e-05
2pm6_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		1e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		1e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		1e-05
2pm9_B	297	Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT O		1e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		4e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		5e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		5e-05
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		6e-05
2pm7_B	297	Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF		8e-05
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		5e-04
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		6e-04
4aez_A	401	Crystal Structure Of Mitotic Checkpoint Complex Len		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score =  110 bits (274), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 80/295 (27%), Positives = 142/295 (48%), Gaps = 22/295 (7%)
Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP 607
            Q +   +S V    FSPDG+ +A+   DK   LW      ++ TL  H+  +  V FSP
Sbjct: 50  LQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTGHSSSVRGVAFSP 108
Query: 608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY 667
               +A++S D+TV++W+       L+T TGHS++V  + F P  + +  + D+ + ++ 
Sbjct: 109 DGQTIASASDDKTVKLWNRNG--QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKT-VKL 165
Query: 668 WSIN-------NGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG 720
           W+ N        G  + V+      + F P    I +A+ +  + + +   Q+ +  L G
Sbjct: 166 WNRNGQLLQTLTGHSSSVWG-----VAFSPDGQTIASASDDKTVKLWNRNGQLLQ-TLTG 219
Query: 721 HKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779
           H + V  V ++  G+ +AS SD+  V++W+      G+ +  L+   +  +   F P   
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWN----RNGQLLQTLTGHSSSVNGVAFRPDGQ 275
Query: 780 SLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
           ++      +T++LWN       TL+ H   V  +A S     +ASAS DK VK+W
Sbjct: 276 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLW 330

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/298 (24%), Positives = 129/298 (43%), Gaps = 30/298 (10%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           F P   ++ +   D    +W  E+   + TL+ HT  + D+ F  S   LA+ SAD T++
Sbjct: 116 FHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIK 175
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682
           +WD +  +  +RT  GH   V S+   P+  D + S   +  I+ W +  G C   F   
Sbjct: 176 LWDFQGFE-CIRTMHGHDHNVSSVSIMPNG-DHIVSASRDKTIKMWEVQTGYCVKTFTGH 233
Query: 683 ATQMRF-QPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY--- 736
              +R  +P     L A+  N   + +  V T+ C+ +L+ H++ V  + W     Y   
Sbjct: 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSI 293
Query: 737 ------------------LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF 778
                             L+   D+ +++W +   S G C+  L    N     +FH   
Sbjct: 294 SEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGVLFHSGG 350
Query: 779 PSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
             +L     +TL +W+    + + TL+AH+  V+SL        V + S D+ VK+W+
Sbjct: 351 KFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 45  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 104
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 105 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 162
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 163 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 222
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 223 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 278
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 279 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 331

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 47  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 106
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 107 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 164
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 165 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 224
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 225 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 280
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 281 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 333

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 28  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 87
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 88  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 145
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 146 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 205
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 206 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 261
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 262 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 314

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 29  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 88
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 89  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 146
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 147 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 206
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 207 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 262
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 263 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 315

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 40  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 99
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 100 ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 157
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 158 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 217
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 218 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 273
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 274 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 326

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 24  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 83
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 84  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 141
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 142 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 201
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 202 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 257
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 258 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 310

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 22  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 81
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 82  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 139
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 140 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 199
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 200 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 255
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 256 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 308

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 83  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 19  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 78
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 79  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 136
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 137 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 196
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 197 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 252
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 253 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 305

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/293 (27%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 23  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 82
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 83  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGK 140
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 141 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 200
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 201 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 256
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + L  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 257 EDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 309

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 97.1 bits (240), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/316 (27%), Positives = 150/316 (47%), Gaps = 19/316 (6%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA    DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---TQMRFQPRLGRILAAAIENYISILD 708
           + +L+ S   +  +R W +  G C     + +   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 709 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 766
             +  C   L    N  V  V ++ +G+Y LA+  D  +++W     SKG+C+   +   
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 767 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 821
           N+ + C+   F  T    +V G  + L  +WN+ T+     L  H  +V S A      +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 822 VASAS--HDKCVKIWK 835
           +ASA+  +DK +K+WK
Sbjct: 297 IASAALENDKTIKLWK 312

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 204 SPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + +  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 19/316 (6%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---TQMRFQPRLGRILAAAIENYISILD 708
           + +L+ S   +  +R W +  G C     + +   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 709 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 766
             +  C   L    N  V  V ++ +G+Y LA+  D  +++W     SKG+C+   +   
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 767 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 821
           N+ + C+   F  T    +V G  + L  +WN+ T+     L  H  +V S A      +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 822 VASAS--HDKCVKIWK 835
           +ASA+  +DK +K++K
Sbjct: 297 IASAALENDKTIKLYK 312

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/316 (26%), Positives = 151/316 (47%), Gaps = 19/316 (6%)
Query: 532 RVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS 591
           ++GR +E  K     +F L    T  V S  FSP+G+ LA+   DK   +W       + 
Sbjct: 4   QMGRGSEFVKPNYALKFTL-AGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK 62
Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H   I+DV +S   + L ++S D+T+++WD  +    L+T  GHS  V   +F+P 
Sbjct: 63  TISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP- 120
Query: 652 KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---TQMRFQPRLGRILAAAIENYISILD 708
           + +L+ S   +  +R W +  G C     + +   + + F      I++++ +    I D
Sbjct: 121 QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWD 180
Query: 709 VETQVCRLKLQGHKN-QVHSVCWNTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTG 766
             +  C   L    N  V  V ++ +G+Y LA+  D  +++W     SKG+C+   +   
Sbjct: 181 TASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY---SKGKCLKTYTGHK 237
Query: 767 NKFHSCV---FHPTFPSLLVIGCYETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGM 821
           N+ + C+   F  T    +V G  + L  +WN+ T+     L  H  +V S A      +
Sbjct: 238 NEKY-CIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENI 296
Query: 822 VASAS--HDKCVKIWK 835
           +ASA+  +DK +K++K
Sbjct: 297 IASAALENDKTIKLFK 312

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 79/293 (26%), Positives = 141/293 (48%), Gaps = 18/293 (6%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T  V S  FSP+G+ LA+   DK   +W       + T+  H   I+DV +S   + L +
Sbjct: 26  TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVS 85
Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +S D+T+++WD  +    L+T  GHS  V   +F+P + +L+ S   +  +R W +  G 
Sbjct: 86  ASDDKTLKIWDVSSGK-CLKTLKGHSNYVFCCNFNP-QSNLIVSGSFDESVRIWDVKTGM 143
Query: 675 CAGVFKSGA---TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-QVHSVCW 730
           C     + +   + + F      I++++ +    I D  +  C   L    N  V  V +
Sbjct: 144 CLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKF 203
Query: 731 NTSGEY-LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCV---FHPTFPSLLVIGC 786
           + +G+Y LA+  D  +++W     SKG+C+   +   N+ + C+   F  T    +V G 
Sbjct: 204 SPNGKYILAATLDNDLKLWDY---SKGKCLKTYTGHKNEKY-CIFANFSVTGGKWIVSGS 259
Query: 787 YETL-ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK 835
            + +  +WN+ T+     L  H  +V S A      ++ASA+  +DK +K+WK
Sbjct: 260 EDNMVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK 312

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 87/314 (27%), Positives = 144/314 (45%), Gaps = 46/314 (14%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADR 619
           ++P G LLA+ G D++  +W TE  S+  KS L E H + +  V +SP  + LA++S D 
Sbjct: 24  WNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDA 83
Query: 620 TVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SC 675
           T  +W     D+  + T  GH   V S+ + PS  +LL +C  +  +  W ++      C
Sbjct: 84  TTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG-NLLATCSRDKSVWVWEVDEEDEYEC 142
Query: 676 AGVFKSGATQMR---FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCW 730
             V  S    ++   + P    + +A+ ++ + +   E    VC   L+GH++ V S+ +
Sbjct: 143 VSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAF 202
Query: 731 NTSGEYLASVSDE-LVRVW------------SIGSGSKGECIHELSCTGNKFHS-CVFHP 776
           + SG+ LAS SD+  VR+W              GS    +CI    CT + FHS  ++  
Sbjct: 203 DPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCI----CTLSGFHSRTIYDI 258
Query: 777 TFPSL---LVIGCY-ETLELWNMTENK-----TLTLSAHDKLVSSLAASTVN------GM 821
            +  L   L   C  + + ++    N      T +L+AH     S   + V       G+
Sbjct: 259 AWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGL 318
Query: 822 VASASHDKCVKIWK 835
           +AS S D  V  WK
Sbjct: 319 LASCSDDGEVAFWK 332

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 83.2 bits (204), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 76/274 (27%), Positives = 129/274 (47%), Gaps = 21/274 (7%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVW 624
           G  + +G  D    +W   +     TL  HT   W + +R +  +S     S DRT++VW
Sbjct: 129 GNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIIS----GSTDRTLKVW 184
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
           + E  +  + T  GH++TV  +  H   E  + S   ++ +R W I  G C  V      
Sbjct: 185 NAETGE-CIHTLYGHTSTVRCMHLH---EKRVVSGSRDATLRVWDIETGQCLHVLMGHVA 240
Query: 685 QMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D 742
            +R     GR +++ A +  + + D ET+ C   LQGH N+V+S+     G ++ S S D
Sbjct: 241 AVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL--QFDGIHVVSGSLD 298
Query: 743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL- 801
             +RVW + +G+   CIH L  TG++  +         L+      T+++W++   + L 
Sbjct: 299 TSIRVWDVETGN---CIHTL--TGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQ 353
Query: 802 TLSAHDKLVSSLAASTVN-GMVASASHDKCVKIW 834
           TL   +K  S++     N   V ++S D  VK+W
Sbjct: 354 TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 80/311 (25%), Positives = 131/311 (42%), Gaps = 71/311 (22%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
           P+S   + S  FSPDGK LATG  D+   +W  E+  +   L+ H Q I  + + PS  +
Sbjct: 120 PSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDK 179
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
           L + S DRTVR+WD       LR  TG  +  +S++                        
Sbjct: 180 LVSGSGDRTVRIWD-------LR--TGQCSLTLSIE------------------------ 206
Query: 672 NGSCAGVFKSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQ-------GHKN 723
                     G T +   P  G+ +AA +++  + + D ET     +L        GHK+
Sbjct: 207 ---------DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD 257
Query: 724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------GECIHELSCTGNK-FHSC 772
            V+SV +   G+ + S S D  V++W++ + +          G C  E++  G+K F   
Sbjct: 258 SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC--EVTYIGHKDFVLS 315
Query: 773 VFHPTFPSLLVIGCYET-LELWN-MTENKTLTLSAHDKLVSSLAASTVNGM------VAS 824
           V        ++ G  +  +  W+  + N  L L  H   V S+A +  + +       A+
Sbjct: 316 VATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFAT 375
Query: 825 ASHDKCVKIWK 835
            S D   +IWK
Sbjct: 376 GSGDCKARIWK 386

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 54/239 (22%), Positives = 96/239 (40%), Gaps = 43/239 (17%)
Query: 630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR-- 687
           D  L     H++ V  + F    E L   C+  +++  + +++GS        +   +  
Sbjct: 54  DVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQV--YRVSDGSLVARLSDDSAANKDP 111
Query: 688 -------------------FQPRLGRILAAAIEN-YISILDVETQVCRLKLQGHKNQVHS 727
                              F P  G+ LA   E+  I I D+E +   + LQGH+  ++S
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 170
Query: 728 VCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC 786
           + +  SG+ L S S D  VR+W + +   G+C   LS   +   +    P     +  G 
Sbjct: 171 LDYFPSGDKLVSGSGDRTVRIWDLRT---GQCSLTLSIE-DGVTTVAVSPGDGKYIAAGS 226
Query: 787 YE-TLELWNM----------TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
            +  + +W+           +EN++ T   H   V S+  +     V S S D+ VK+W
Sbjct: 227 LDRAVRVWDSETGFLVERLDSENESGT--GHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 283

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/184 (26%), Positives = 91/184 (49%), Gaps = 5/184 (2%)
Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
           FSPD + LATG H  K  ++  ES   + +L+   ++I  + +SP    LA+ + D  + 
Sbjct: 130 FSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG 682
           ++D       L T  GH+  + SL F P  + LL +  ++  I+ + + + + AG     
Sbjct: 190 IFDIATGKL-LHTLEGHAMPIRSLTFSPDSQ-LLVTASDDGYIKIYDVQHANLAGTLSGH 247
Query: 683 AT---QMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS 739
           A+    + F P     ++++ +  + + DV T+ C      H++QV  V +N +G  + S
Sbjct: 248 ASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVS 307
Query: 740 VSDE 743
           V D+
Sbjct: 308 VGDD 311

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 63/233 (27%), Positives = 112/233 (48%), Gaps = 18/233 (7%)
Query: 552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSR 611
           P + +KV S   S D  LL+ G +  +    C+     +  LE H+ +++DV  S + + 
Sbjct: 25  PETATKVVST--SRDKTLLSWGPNPDRHSSECSYGLPDRR-LEGHSAFVSDVALSNNGNF 81
Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
             ++S D ++R+W+ +N     + F GH+  V+S+ F P    ++    +N+ +R W++ 
Sbjct: 82  AVSASWDHSLRLWNLQNGQCQYK-FLGHTKDVLSVAFSPDNRQIVSGGRDNA-LRVWNV- 138
Query: 672 NGSCAGVFKSGA-----TQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQGHKNQ 724
            G C      GA     + +RF P L    I++   +N + + D+ T      L+GH N 
Sbjct: 139 KGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNY 198
Query: 725 VHSVCWNTSGEYLASV-SDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP 776
           V SV  +  G   AS   D + R+W +   +KGE + E++  G   +   F P
Sbjct: 199 VTSVTVSPDGSLCASSDKDGVARLWDL---TKGEALSEMA-AGAPINQICFSP 247

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 51/163 (31%), Positives = 76/163 (46%), Gaps = 18/163 (11%)
Query: 512 GSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA 571
           GS D  V  +   + AD            + F      +I    ++V+   +S DG  LA
Sbjct: 76  GSFDSTVSIWAKEESAD------------RTFEMDLLAIIEGHENEVKGVAWSNDGYYLA 123
Query: 572 TGGHDKKAVLWCT----ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE 627
           T   DK   +W T    E +   S L+EH+Q +  V + PS + LA+SS D TVR+W   
Sbjct: 124 TCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDY 183
Query: 628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDL-LCSCDNNSEIRYW 668
           + D+  +    GH  TV S DF  ++    LCS  ++S +R W
Sbjct: 184 DDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVW 226

>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1 Length = 330

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 60/242 (24%), Positives = 99/242 (40%), Gaps = 45/242 (18%)
Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKEDLLCSCDN 661
           F  S   LAT S DR +++   +  D++L      T H   + S+ + P    LL +   
Sbjct: 20  FDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTS-LLAAGSF 78
Query: 662 NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 721
           +S +  W+          K  +    F+  L  I+                      +GH
Sbjct: 79  DSTVSIWA----------KEESADRTFEMDLLAII----------------------EGH 106
Query: 722 KNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFP 779
           +N+V  V W+  G YLA+ S D+ V +W    SG + ECI  L          ++HP+  
Sbjct: 107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS-E 165
Query: 780 SLLVIGCY-ETLELWNMTENK---TLTLSAHDKLVSSLAASTVNGM--VASASHDKCVKI 833
           +LL    Y +T+ +W   ++       L+ H+  V S       G+  + S S D  V++
Sbjct: 166 ALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRV 225
Query: 834 WK 835
           WK
Sbjct: 226 WK 227

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 22/218 (10%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 128 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 185
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 186 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 242
Query: 669 SINNGSCAGVFKSG--ATQMRFQPRLGRILAAA--------IENYISILDVETQVCRLKL 718
            +N G        G     + F P    + AA         +E  I + +++ +V     
Sbjct: 243 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 302
Query: 719 QGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSK 755
           +    Q  S+ W+  G+ L A  +D LVRVW +  G++
Sbjct: 303 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 64/303 (21%), Positives = 122/303 (40%), Gaps = 51/303 (16%)
Query: 565 PDGKLLATGGHDKKAVLWC-----TESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR 619
           PD  ++ +   DK  ++W      T     +  L  H+ +++DV  S       + S D 
Sbjct: 51  PD--MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDG 108
Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
           T+R+WD      + R F GH+  V+S+ F      ++ S   +  I+ W+   G C    
Sbjct: 109 TLRLWDLTTGT-TTRRFVGHTKDVLSVAFSSDNRQIV-SGSRDKTIKLWN-TLGVCKYTV 165
Query: 680 K-----SGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCW 730
           +        + +RF P      I++   +  + + ++    C+LK    GH   +++V  
Sbjct: 166 QDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTV 223
Query: 731 NTSGEYLAS-VSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLV 783
           +  G   AS   D    +W +  G        G+ I+ L  + N++  C    T PS   
Sbjct: 224 SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINALCFSPNRYWLCA--ATGPS--- 278
Query: 784 IGCYETLELWNMTENKTLTLSAHDKLVS-----------SLAASTVNGMVASASHDKCVK 832
                 +++W++ E K +      +++S           SLA S     + +   D  V+
Sbjct: 279 ------IKIWDL-EGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVR 331
Query: 833 IWK 835
           +W+
Sbjct: 332 VWQ 334

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 59/218 (27%), Positives = 98/218 (44%), Gaps = 22/218 (10%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTE---SFTVKSTLEEHTQWITDVRFSPSLSR 611
           T  V S  FS D + + +G  DK   LW T     +TV+   E H++W++ VRFSP+ S 
Sbjct: 105 TKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD--ESHSEWVSCVRFSPNSSN 162
Query: 612 --LATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
             + +   D+ V+VW+  N    L+T   GH+  + ++   P    L  S   + +   W
Sbjct: 163 PIIVSCGWDKLVKVWNLAN--CKLKTNHIGHTGYLNTVTVSPDGS-LCASGGKDGQAMLW 219
Query: 669 SINNGSCAGVFKSG--ATQMRFQPRLGRILAAA--------IENYISILDVETQVCRLKL 718
            +N G        G     + F P    + AA         +E  I + +++ +V     
Sbjct: 220 DLNEGKHLYTLDGGDIINALCFSPNRYWLCAATGPSIKIWDLEGKIIVDELKQEVISTSS 279
Query: 719 QGHKNQVHSVCWNTSGEYL-ASVSDELVRVWSIGSGSK 755
           +    Q  S+ W+  G+ L A  +D LVRVW +  G++
Sbjct: 280 KAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 317

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 65.9 bits (159), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 48/192 (25%), Positives = 92/192 (47%), Gaps = 17/192 (8%)
Query: 566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD 625
           D +++ TG  D    +W   +  + +TL  H + +  +RF+  +  + T S DR++ VWD
Sbjct: 182 DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGM--MVTCSKDRSIAVWD 239
Query: 626 TENP-DYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----- 678
             +P D +L R   GH   V  +DF    +  + S   +  I+ W  N  +C  V     
Sbjct: 240 MASPTDITLRRVLVGHRAAVNVVDF---DDKYIVSASGDRTIKVW--NTSTCEFVRTLNG 294
Query: 679 FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738
            K G   ++++ RL  +++ + +N I + D+E   C   L+GH+  V  + ++     ++
Sbjct: 295 HKRGIACLQYRDRL--VVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNK-RIVS 351
Query: 739 SVSDELVRVWSI 750
              D  ++VW +
Sbjct: 352 GAYDGKIKVWDL 363

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG 753
           +I++   +N I I D  T  C+  L GH   V  + ++       S SD  VRVW + + 
Sbjct: 145 KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS-SDSTVRVWDVNT- 202
Query: 754 SKGECIHELSCTGNKFHSC--VFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKL 809
             GE ++ L       H C  V H  F + +++ C +  ++ +W+M     +TL     L
Sbjct: 203 --GEMLNTL------IHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITL--RRVL 252
Query: 810 VSSLAASTV----NGMVASASHDKCVKIW 834
           V   AA  V    +  + SAS D+ +K+W
Sbjct: 253 VGHRAAVNVVDFDDKYIVSASGDRTIKVW 281

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 128/283 (45%), Gaps = 50/283 (17%)
Query: 502 LTDMDRFVDDGSL-DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES 560
           LT  + FV D +L  +N  +  S       D+  R  ++  G T+  F       S+V S
Sbjct: 72  LTGHNHFVSDLALSQENCFAISSS-----WDKTLRLWDLRTGTTYKRF---VGHQSEVYS 123
Query: 561 CHFSPDGKLLATGGHDKKAVLW-----CTESFTVKSTLEEHTQWITDVRFSPSLS----- 610
             FSPD + + + G +++  LW     C  S   K   E H+ W++ VR+SP +      
Sbjct: 124 VAFSPDNRQILSAGAEREIKLWNILGECKFSSAEK---ENHSDWVSCVRYSPIMKSANKV 180
Query: 611 -----RLATSSADRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
                  A+   D  ++VW+T   ++ +R TF  H + V  L   P+ +  + +   + +
Sbjct: 181 QPFAPYFASVGWDGRLKVWNT---NFQIRYTFKAHESNVNHLSISPNGK-YIATGGKDKK 236
Query: 665 IRYWSINNGSCAG-VFKSGAT--QMRFQPRLGRILAAAIENYISILDVETQ----VCRL- 716
           +  W I N +     F +G+T  Q+ F P+L + +A   +  + I ++ TQ    VC + 
Sbjct: 237 LLIWDILNLTYPQREFDAGSTINQIAFNPKL-QWVAVGTDQGVKIFNLMTQSKAPVCTIE 295
Query: 717 -----KLQGHKN---QVHSVCWNTSGEYL-ASVSDELVRVWSI 750
                K +G K    Q  S+ WN  G+ L A  +D ++R +S 
Sbjct: 296 AEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSF 338

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 50.4 bits (119), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 34/212 (16%)
Query: 566 DGKLLATGGHDKKAVLWCTES------FTV-KSTLEEHTQWITDVRFSPSLSRLATSSAD 618
           D  +L +G  DK  ++W          F +    L  H  +++D+  S       +SS D
Sbjct: 38  DSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISSSWD 97
Query: 619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC--- 675
           +T+R+WD      + + F GH + V S+ F P    +L S     EI+ W+I  G C   
Sbjct: 98  KTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNRQIL-SAGAEREIKLWNI-LGECKFS 154
Query: 676 ----------------AGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 719
                           + + KS      F P    +     +  + + +   Q+ R   +
Sbjct: 155 SAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV---GWDGRLKVWNTNFQI-RYTFK 210
Query: 720 GHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 750
            H++ V+ +  + +G+Y+A+   D+ + +W I
Sbjct: 211 AHESNVNHLSISPNGKYIATGGKDKKLLIWDI 242

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/273 (21%), Positives = 106/273 (38%), Gaps = 74/273 (27%)
Query: 590 KSTLEEHTQWITDVR--FSPSLSR----LATSSADRTVRVW----DTENPDYSL--RTFT 637
           +  LE H+ W+T +   FS   +     L + S D+TV +W    + +N  + +  +  T
Sbjct: 14  RGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALT 73
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILA 697
           GH+  V          DL  S +N             C  +  S    +R          
Sbjct: 74  GHNHFV---------SDLALSQEN-------------CFAISSSWDKTLR---------- 101
Query: 698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVSDELVRVWSIGSGSKG 756
                   + D+ T     +  GH+++V+SV ++    + L++ ++  +++W+I     G
Sbjct: 102 --------LWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI----LG 149
Query: 757 ECIHELSCTGNKFHS----CV-----------FHPTFPSLLVIGCYETLELWNMTENKTL 801
           EC  + S    + HS    CV             P  P    +G    L++WN       
Sbjct: 150 EC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIRY 207
Query: 802 TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
           T  AH+  V+ L+ S     +A+   DK + IW
Sbjct: 208 TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 61/254 (24%), Positives = 112/254 (44%), Gaps = 23/254 (9%)
Query: 522 LSPDDADPRDRVGRSAEVGK-----GFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD 576
           L  D    + R+  S++ GK      FT  +   +    + V +C ++P G  +A GG D
Sbjct: 68  LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLD 127
Query: 577 KKAVLW-----CTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD 630
            K  ++       E+   K  ++  HT +++   F+ S  ++ T+S D T  +WD E+  
Sbjct: 128 NKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ 187
Query: 631 YSLRTFTGHSTTVMSLDFHPSKED---LLCSCDNNSEIRYWSINNGSCAGVF---KSGAT 684
             L++F GH   V+ LD  PS+     +   CD  + +  W + +G C   F   +S   
Sbjct: 188 L-LQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMV--WDMRSGQCVQAFETHESDVN 244
Query: 685 QMRFQPRLGRILAAAIENYISILDV--ETQVCRLKLQGHKNQVHSVCWNTSGEYL-ASVS 741
            +R+ P      + + +    + D+  + +V     +       SV ++ SG  L A  +
Sbjct: 245 SVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYN 304
Query: 742 DELVRVWSIGSGSK 755
           D  + VW +  GS+
Sbjct: 305 DYTINVWDVLKGSR 318

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 39/307 (12%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 644 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 703
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 704 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 762
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ 712
           E LL SC  +  +R W + + +            R    + R   ++ E+    ++V  +
Sbjct: 763 E-LLASCSADGTLRLWDVRSAN-----------ERKSINVKRFFLSS-EDPPEDVEVIVK 809
Query: 713 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK--FH 770
            C               W+  G+ +   +   V ++ I +      IH    TG+     
Sbjct: 810 CCS--------------WSADGDKIIVAAKNKVLLFDIHTSGLLAEIH----TGHHSTIQ 851
Query: 771 SCVFHPTFPSLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 828
            C F P +  L VI   +  +ELWN+ +  K      H   V  +  S       +AS D
Sbjct: 852 YCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 910
Query: 829 KCVKIWK 835
           + +++W+
Sbjct: 911 QTIRVWE 917

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 72/307 (23%), Positives = 125/307 (40%), Gaps = 39/307 (12%)
Query: 535 RSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE 594
           ++ +V K  T  +   I A   +V  C FS D   +AT   DKK  +W + +  +  T +
Sbjct: 637 KTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYD 696
Query: 595 EHTQWITDVRFSPSLSR--LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK 652
           EH++ +    F+   +   LAT S D  +++WD  N      T  GH+ +V    F P  
Sbjct: 697 EHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDL-NQKECRNTMFGHTNSVNHCRFSPDD 755
Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ 712
           E LL SC  +  +R W + + +            R    + R   ++ E+    ++V  +
Sbjct: 756 E-LLASCSADGTLRLWDVRSAN-----------ERKSINVKRFFLSS-EDPPEDVEVIVK 802
Query: 713 VCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNK--FH 770
            C               W+  G+ +   +   V ++ I +      IH    TG+     
Sbjct: 803 CCS--------------WSADGDKIIVAAKNKVLLFDIHTSGLLAEIH----TGHHSTIQ 844
Query: 771 SCVFHPTFPSLLVIGCYE-TLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 828
            C F P +  L VI   +  +ELWN+ +  K      H   V  +  S       +AS D
Sbjct: 845 YCDFSP-YDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDD 903
Query: 829 KCVKIWK 835
           + +++W+
Sbjct: 904 QTIRVWE 910

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 96  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 155
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P        
Sbjct: 156 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 208
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
                              +F SGA             A+A      + DV   +CR   
Sbjct: 209 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 233
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
            GH++ ++++C+  +G   A+ SD+   R++ + +        EL    +    C +   
Sbjct: 234 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 287
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
           +F     LL+ G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  
Sbjct: 288 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 346
Query: 831 VKIW 834
           +KIW
Sbjct: 347 LKIW 350

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 59.7 bits (143), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P        
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 197
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
                              +F SGA             A+A      + DV   +CR   
Sbjct: 198 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 222
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
            GH++ ++++C+  +G   A+ SD+   R++ + +        EL    +    C +   
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 276
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
           +F     LL+ G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  
Sbjct: 277 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 831 VKIW 834
           +KIW
Sbjct: 336 LKIW 339

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P        
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 197
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
                              +F SGA             A+A      + DV   +CR   
Sbjct: 198 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 222
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
            GH++ ++++C+  +G   A+ SD+   R++ + +        EL    +    C +   
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 276
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
           +F     LL+ G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  
Sbjct: 277 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 831 VKIW 834
           +KIW
Sbjct: 336 LKIW 339

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P        
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 197
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
                              +F SGA             A+A      + DV   +CR   
Sbjct: 198 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 222
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
            GH++ ++++C+  +G   A+ SD+   R++ + +        EL    +    C +   
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 276
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
           +F     LL+ G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  
Sbjct: 277 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 831 VKIW 834
           +KIW
Sbjct: 336 LKIW 339

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 76/304 (25%), Positives = 127/304 (41%), Gaps = 61/304 (20%)
Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQ 598
           +T  +   IP  +S V +C ++P G  +A GG D    ++  ++      V   L  HT 
Sbjct: 85  YTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTG 144
Query: 599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS 658
           +++  RF    +++ TSS D T  +WD E       TFTGH+  VMSL   P        
Sbjct: 145 YLSCCRFLDD-NQIVTSSGDTTCALWDIETG-QQTTTFTGHTGDVMSLSLAPDTR----- 197
Query: 659 CDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL 718
                              +F SGA             A+A      + DV   +CR   
Sbjct: 198 -------------------LFVSGACD-----------ASA-----KLWDVREGMCRQTF 222
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHP 776
            GH++ ++++C+  +G   A+ SD+   R++ + +        EL    +    C +   
Sbjct: 223 TGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD------QELMTYSHDNIICGITSV 276
Query: 777 TFPS---LLVIGCYETL--ELWN-MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
           +F     LL+ G Y+     +W+ +  ++   L+ HD  VS L  +     VA+ S D  
Sbjct: 277 SFSKSGRLLLAG-YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF 335
Query: 831 VKIW 834
           +KIW
Sbjct: 336 LKIW 339

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 235 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 294
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAA--IE 701
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 295 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 748
           N + I    T     +L+GH ++V S+  +  G  +AS  +DE +R+W
Sbjct: 355 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 402

>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite Degron Recognition By ApcC. Length = 431

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 26/286 (9%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
           G +LA    D    LW   S  +   L  E+  ++I+ V +    + LA  ++   V++W
Sbjct: 127 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 185
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
           D +     LR  T HS  V SL ++     +L S   +  I +  +          SG +
Sbjct: 186 DVQQ-QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 241
Query: 685 Q----MRFQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCWNT-SGE 735
           Q    +R+ P    + +   +N +++      +   + LQ    H+  V +V W      
Sbjct: 242 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 301
Query: 736 YLAS---VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETL 790
            LA+    SD  +R+W++ SG+   C+  +    ++  S ++ P +  L+    +    L
Sbjct: 302 VLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 357
Query: 791 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
            +W   T  K   L  H   V SL  S     VASA+ D+ +++W+
Sbjct: 358 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 224 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 283
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAA--IE 701
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 284 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 748
           N + I    T     +L+GH ++V S+  +  G  +AS  +DE +R+W
Sbjct: 344 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 391

>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 420

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 121/286 (42%), Gaps = 26/286 (9%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
           G +LA    D    LW   S  +   L  E+  ++I+ V +    + LA  ++   V++W
Sbjct: 116 GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 174
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
           D +     LR  T HS  V SL ++     +L S   +  I +  +          SG +
Sbjct: 175 DVQQ-QKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 230
Query: 685 Q----MRFQPRLGRILAAAIENYISIL-DVETQVCRLKLQ---GHKNQVHSVCWNT-SGE 735
           Q    +R+ P    + +   +N +++      +   + LQ    H+  V +V W      
Sbjct: 231 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 290
Query: 736 YLAS---VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETL 790
            LA+    SD  +R+W++ SG+   C+  +    ++  S ++ P +  L+    +    L
Sbjct: 291 VLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 346
Query: 791 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
            +W   T  K   L  H   V SL  S     VASA+ D+ +++W+
Sbjct: 347 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 82/168 (48%), Gaps = 10/168 (5%)
Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT---ENPDYSLRTFTGHSTTVMSLD 647
           +TL  H+Q +  +R++P    LA+   D  V VW +   E     L+TFT H   V ++ 
Sbjct: 144 ATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVA 203
Query: 648 FHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAAA--IE 701
           + P + ++L +    S+  IR W++ +G+C       S    + + P    +++     +
Sbjct: 204 WCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVW 748
           N + I    T     +L+GH ++V S+  +  G  +AS  +DE +R+W
Sbjct: 264 NQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLW 311

>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site Degron Recognition By ApcC Length = 318

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 120/286 (41%), Gaps = 26/286 (9%)
Query: 567 GKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVW 624
           G +LA    D    LW   S  +   L  E+  ++I+ V +    + LA  ++   V++W
Sbjct: 36  GNVLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLW 94
Query: 625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT 684
           D +     LR  T HS  V SL +      +L S   +  I +  +          SG +
Sbjct: 95  DVQQQK-RLRNMTSHSARVGSLSW---NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHS 150
Query: 685 Q----MRFQPRLGRILAAAIENYISIL-DVETQVCRLKLQG---HKNQVHSVCWNT-SGE 735
           Q    +R+ P    + +   +N +++      +   + LQ    H+  V +V W      
Sbjct: 151 QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSN 210
Query: 736 YLAS---VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETL 790
            LA+    SD  +R+W++ SG+   C+  +    ++  S ++ P +  L+    +    L
Sbjct: 211 VLATGGGTSDRHIRIWNVCSGA---CLSAVDAH-SQVCSILWSPHYKELISGHGFAQNQL 266
Query: 791 ELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
            +W   T  K   L  H   V SL  S     VASA+ D+ +++W+
Sbjct: 267 VIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312

>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 38/138 (27%), Positives = 65/138 (47%), Gaps = 16/138 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYWSI 670
             ++CS   ++ ++ W +
Sbjct: 389 PWVICSVSEDNIMQIWQM 406

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T  E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +
Sbjct: 44  TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
              P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   + 
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSIN----NGSCAGVFKSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 717
            ++ WS+     N +     + G   + + P   +  ++ A+ +  I I D +T+ C   
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
           L+GH + V    ++ +   + S S D  +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 49.3 bits (116), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR---FQP 690
           +TF+  S  V  +DFHP++  +L +   +  +  W+          +   T +R   F  
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVEIWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
           R   I+  + +  I + +  T    +  + H + + S+  + +  Y+ S SD+L V++W+
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 750 IGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLTLS 804
             +    E   E       F  CV F+P  PS    GC + T+++W++   T N TLT +
Sbjct: 126 WENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-T 181
Query: 805 AHDKLVSSLAASTV--NGMVASASHDKCVKIW 834
             ++ V+ +    +     + +AS D  +KIW
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T  E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +
Sbjct: 44  TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
              P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   + 
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSIN----NGSCAGVFKSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 717
            ++ WS+     N +     + G   + + P   +  ++ A+ +  I I D +T+ C   
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
           L+GH + V    ++ +   + S S D  +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.3 bits (116), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR---FQP 690
           +TF+  S  V  +DFHP++  +L +   +  +  W+          +   T +R   F  
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
           R   I+  + +  I + +  T    +  + H + + S+  + +  Y+ S SD+L V++W+
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 750 IGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLTLS 804
             +    E   E       F  CV F+P  PS    GC + T+++W++   T N TLT +
Sbjct: 126 WENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-T 181
Query: 805 AHDKLVSSLAASTV--NGMVASASHDKCVKIW 834
             ++ V+ +    +     + +AS D  +KIW
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T  E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +
Sbjct: 44  TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
              P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   + 
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSIN----NGSCAGVFKSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 717
            ++ WS+     N +     + G   + + P   +  ++ A+ +  I I D +T+ C   
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
           L+GH + V    ++ +   + S S D  +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR---FQP 690
           +TF+  S  V  +DFHP++  +L +   +  +  W+          +   T +R   F  
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
           R   I+  + +  I + +  T    +  + H + + S+  + +  Y+ S SD+L V++W+
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 750 IGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLTLS 804
             +    E   E       F  CV F+P  PS    GC + T+++W++   T N TLT +
Sbjct: 126 WENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-T 181
Query: 805 AHDKLVSSLAASTV--NGMVASASHDKCVKIW 834
             ++ V+ +    +     + +AS D  +KIW
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/213 (21%), Positives = 91/213 (42%), Gaps = 7/213 (3%)
Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T  E + I  + + V +  F      +  G  D +  ++   +       E H  +I  +
Sbjct: 44  TQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSI 103
Query: 604 RFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS 663
              P+   + + S D TV++W+ EN     +TF GH   VM + F+P       S   + 
Sbjct: 104 AVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR 163
Query: 664 EIRYWSIN----NGSCAGVFKSGATQMRFQPRLGR--ILAAAIENYISILDVETQVCRLK 717
            ++ WS+     N +     + G   + + P   +  ++ A+ +  I I D +T+ C   
Sbjct: 164 TVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVAT 223
Query: 718 LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWS 749
           L+GH + V    ++ +   + S S D  +++W+
Sbjct: 224 LEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 51/212 (24%), Positives = 97/212 (45%), Gaps = 16/212 (7%)
Query: 634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR---FQP 690
           +TF+  S  V  +DFHP++  +L +   +  +  W+          +   T +R   F  
Sbjct: 7   KTFSNRSDRVKGIDFHPTEPWVLTTL-YSGRVELWNYETQVEVRSIQVTETPVRAGKFIA 65
Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDEL-VRVWS 749
           R   I+  + +  I + +  T    +  + H + + S+  + +  Y+ S SD+L V++W+
Sbjct: 66  RKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWN 125
Query: 750 IGSGSKGECIHELSCTGNKFHSCV-FHPTFPSLLVIGCYE-TLELWNM---TENKTLTLS 804
             +    E   E       F  CV F+P  PS    GC + T+++W++   T N TLT +
Sbjct: 126 WENNWALEQTFE---GHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLT-T 181
Query: 805 AHDKLVSSLAASTV--NGMVASASHDKCVKIW 834
             ++ V+ +    +     + +AS D  +KIW
Sbjct: 182 GQERGVNYVDYYPLPDKPYMITASDDLTIKIW 213

>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 63/136 (46%), Gaps = 16/136 (11%)
Query: 549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFS 606
            L+ A T++V    F+P  + +LATG  DK   LW   +  +K  T E H   I  V +S
Sbjct: 269 HLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWS 328
Query: 607 P-SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSK 652
           P + + LA+S  DR + VWD              + P   L    GH+  +    ++P++
Sbjct: 329 PHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNE 388
Query: 653 EDLLCSCDNNSEIRYW 668
             ++CS   ++  + W
Sbjct: 389 PWVICSVSEDNIXQIW 404

>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 277 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 336
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 337 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 396
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 397 IICSVSEDNIMQVWQM 412

>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 275 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 334
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 335 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 394
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 395 IICSVSEDNIMQVWQM 410

>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 67/136 (49%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 273 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 332
Query: 608 SLSRLATSSADRTVRVWD---------TEN----PDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD         TE+    P   L    GH+  +    ++P++  
Sbjct: 333 NETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 392
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 393 IICSVSEDNIMQVWQM 408

>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 65/136 (47%), Gaps = 16/136 (11%)
Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSP- 607
           + A T++V    F+P  + +LATG  DK   LW   +  +K  + E H   I  V++SP 
Sbjct: 269 VDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH 328
Query: 608 SLSRLATSSADRTVRVWD-------------TENPDYSLRTFTGHSTTVMSLDFHPSKED 654
           + + LA+S  DR + VWD              + P   L    GH+  +    ++P++  
Sbjct: 329 NETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKISDFSWNPNEPW 388
Query: 655 LLCSCDNNSEIRYWSI 670
           ++CS   ++ ++ W +
Sbjct: 389 VICSVSEDNIMQVWQM 404

>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379

Iteration: 1
 Score = 49.7 bits (117), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 10  HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 69
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
            +L SC  + ++  W   NG     +   V  +    +++ P   G  +L A+ +  +S+
Sbjct: 70  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 129
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 130 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 189
Query: 751 GSGSK 755
            S ++
Sbjct: 190 NSDAQ 194

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
           GHS  V            L S   +  +R W +  G     F   KS    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
           GHS  V            L S   +  +R W +  G     F   KS    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
            +L SC  + ++  W   NG     +   V  +    +++ P   G  +L A+ +  +S+
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 751 GSGSK 755
            S ++
Sbjct: 188 NSDAQ 192

>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Native Version Length = 297

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        RLAT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
            +L SC  + ++  W   NG     +   V  +    +++ P   G  +L A+ +  +S+
Sbjct: 68  TILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSV 127
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 751 GSGSK 755
            S ++
Sbjct: 188 NSDAQ 192

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
           GHS  V            L S   +  +R W +  G     F   KS    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 110/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
           GHS  V            L S   +  +R W +  G     F   KS    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASM 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH 806
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE Copii Vesicular Coat Length = 297

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 81/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R+AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
            +L SC  + ++  W   NG     +   V  +    +++ P   G  +L A+ +  +S+
Sbjct: 68  TILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSV 127
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 751 GSGSK 755
            S ++
Sbjct: 188 NSDAQ 192

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/261 (22%), Positives = 109/261 (41%), Gaps = 33/261 (12%)
Query: 587 FTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFTGH 639
             ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F GH
Sbjct: 1   LVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFKGH 58
Query: 640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGRIL 696
           S  V            L S   +  +R W +  G     F   KS    +    +   I+
Sbjct: 59  SHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 697 AAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRVWS 749
           + + +  I +  ++ Q C   L GH + V  V         + S   +++ +D++V+ W+
Sbjct: 118 SGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWN 176
Query: 750 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK 808
           +   ++ +   +     +  ++    P    +   G    + LWN+   K + TLSA D+
Sbjct: 177 L---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQDE 233
Query: 809 LVS--------SLAASTVNGM 821
           + S         LAA+T  G+
Sbjct: 234 VFSLAFSPNRYWLAAATATGI 254

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 78/165 (47%), Gaps = 13/165 (7%)
Query: 550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL 609
           ++   T ++ S  +  + K   +   D    +W  E+  +  TL+ HT  +  +R S   
Sbjct: 305 ILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLSDKF 364
Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             L +++AD ++R WD    DYS R F+ H T + ++      +++L S   N +   ++
Sbjct: 365 --LVSAAADGSIRGWDAN--DYS-RKFSYHHTNLSAITTFYVSDNILVSGSEN-QFNIYN 418
Query: 670 INNGSC--AGVFKSGATQMRFQPRLGRILAAAIE----NYISILD 708
           + +G    A + K  A Q+      G+ L AA+E    +++ ILD
Sbjct: 419 LRSGKLVHANILKD-ADQIWSVNFKGKTLVAAVEKDGQSFLEILD 462

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 45.8 bits (107), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 59/279 (21%), Positives = 116/279 (41%), Gaps = 49/279 (17%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
           ++TL  H T  IT ++F  +   + T + D+ +RV+D+ N  + L+  +GH   V +L +
Sbjct: 114 RTTLRGHMTSVITCLQFEDNY--VITGADDKMIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRF-----QPRLGRILAAAIENY 703
             +   +L S   +  +R W I  G C  VF+   + +R         +  I+  + +N 
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 704 ISILDV-----------------------ETQVCRLKLQGHKNQVHSVCWN----TSGEY 736
           + +  +                       E       L+GH   V +V  +     SG Y
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSY 288
Query: 737 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796
                D  + VW +   ++ +C++ LS   ++ +S ++       +      T+ +W++ 
Sbjct: 289 -----DNTLIVWDV---AQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE 340
Query: 797 ENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
             + + TL  H  LV  L  S  +  + SA+ D  ++ W
Sbjct: 341 NGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 60/263 (22%), Positives = 108/263 (41%), Gaps = 33/263 (12%)
Query: 585 ESFTVKSTLEEHTQWITDVRFS---PSLSRLATSSADRTVRVW----DTENPDYSLRTFT 637
           E   ++ TLE H  W+T +  S   P+L  L ++S D+T+  W    D +     +R+F 
Sbjct: 5   EVLVLRGTLEGHNGWVTSLATSAGQPNL--LLSASRDKTLISWKLTGDDQKFGVPVRSFK 62
Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLGR 694
           GHS  V            L S   +  +R W +  G     F   KS    +    +   
Sbjct: 63  GHSHIVQDCTLTADGAYAL-SASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASX 121
Query: 695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSV-------CWNTSGEYLASVSDELVRV 747
           I++ + +  I +  ++ Q C   L GH + V  V         + S   +++ +D+ V+ 
Sbjct: 122 IISGSRDKTIKVWTIKGQ-CLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKA 180
Query: 748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT-LTLSAH 806
           W++   ++ +   +     +  ++    P    +   G    + LWN+   K   TLSA 
Sbjct: 181 WNL---NQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLSAQ 237
Query: 807 DKLVS--------SLAASTVNGM 821
           D++ S         LAA+T  G+
Sbjct: 238 DEVFSLAFSPNRYWLAAATATGI 260

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 117/280 (41%), Gaps = 51/280 (18%)
Query: 590 KSTLEEH-TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF 648
           ++TL  H T  IT ++F  +   + T + D+ +RV+D+ N  + L+  +GH   V +L +
Sbjct: 114 RTTLRGHXTSVITCLQFEDNY--VITGADDKXIRVYDSINKKFLLQ-LSGHDGGVWALKY 170
Query: 649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRF-----QPRLGRILAAAIENY 703
             +   +L S   +  +R W I  G C  VF+   + +R         +  I+  + +N 
Sbjct: 171 --AHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNT 228
Query: 704 ISILDV-----------------------ETQVCRLKLQGHKNQVHSVCWN----TSGEY 736
           + +  +                       E       L+GH   V +V  +     SG Y
Sbjct: 229 LHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSY 288
Query: 737 LASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT 796
                D  + VW +   ++ +C++ LS   ++ +S ++       +      T+ +W++ 
Sbjct: 289 -----DNTLIVWDV---AQXKCLYILSGHTDRIYSTIYDHERKRCISASXDTTIRIWDL- 339
Query: 797 ENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
           EN  L  TL  H  LV  L  S  +  + SA+ D  ++ W
Sbjct: 340 ENGELXYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGW 377

>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE Copii Vesicular Coat, Selenomethionine Version Length = 297

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 25/185 (13%)
Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTFTGHSTTVMSLDF-HPSKE 653
           H + I D        R AT S+D+T+++++ E   + L  T TGH   V  +D+ HP   
Sbjct: 8   HNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFG 67
Query: 654 DLLCSCDNNSEIRYWSINNG-----SCAGVFKSGATQMRFQP-RLG-RILAAAIENYISI 706
            +L SC  + ++  W   NG     +   V  +    +++ P   G  +L A+ +  +S+
Sbjct: 68  TILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGKVSV 127
Query: 707 LDVETQ--VCRLKLQGHKNQVHSVCW--------------NTSGEYLASVSDELVRVWSI 750
           ++ +       + +  H   V+S  W                S +++   +D LV++W  
Sbjct: 128 VEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKY 187
Query: 751 GSGSK 755
            S ++
Sbjct: 188 NSDAQ 192

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/204 (20%), Positives = 93/204 (45%), Gaps = 9/204 (4%)
Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
           VE    S DG+   +G  D +  LW   +         HT+ +  V FS    ++ ++S 
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR 492
Query: 618 DRTVRVWDTENP-DYSL-RTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN-- 672
           DRT+++W+T     Y++     GH   V  + F P+  +  + S   +  ++ W+++N  
Sbjct: 493 DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 673 --GSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW 730
              + AG   +G          G + A+  ++ + +L    +  +L      + +H++C+
Sbjct: 553 LRSTLAG--HTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEANSVIHALCF 610
Query: 731 NTSGEYLASVSDELVRVWSIGSGS 754
           + +  +L + ++  +++W + S S
Sbjct: 611 SPNRYWLCAATEHGIKIWDLESKS 634

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 59/307 (19%), Positives = 121/307 (39%), Gaps = 28/307 (9%)
Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           + KV S  ++P+   + +   D + ++W   +      ++ H  W+ +  F+P+   +A 
Sbjct: 66  SGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVAC 125
Query: 615 SSADRTVRVWDTE---NPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
              D    +++     + D ++   R  TGH     S  + P +E  L +   +     W
Sbjct: 126 GGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLW 185
Query: 669 SINNGSCAGV----FKSGATQMRFQPRLGRI-----LAAAIENYISILDVE-TQVCRLKL 718
            +  G    +    F SG T       +  +     ++ + +  + + D+  T       
Sbjct: 186 DVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTY 245
Query: 719 QGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECI--------HELSCTGNKF 769
            GH+  ++SV +   G+   + SD+   R++ + +G + +          +EL    +  
Sbjct: 246 HGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVA 305
Query: 770 HSCVFHPTFPSLLVIGCY--ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH 827
            S      F       CY  +TL L  M  N     ++H+  +S L  S+    + + S 
Sbjct: 306 FSISGRLLFAGYSNGDCYVWDTL-LAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSW 364
Query: 828 DKCVKIW 834
           DK +KIW
Sbjct: 365 DKNLKIW 371

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 51/229 (22%), Positives = 94/229 (41%), Gaps = 22/229 (9%)
Query: 558 VESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
           + S  F P     + +G  D    ++    F  KST  EHT+++  VR++P  S  A++ 
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 617 ADRTVRVWDTEN-------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
            D T+ +++  +        D SL+    HS +V  L + P     + S   +  I+ W+
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKN-VAHSGSVFGLTWSPDGTK-IASASADKTIKIWN 267
Query: 670 INNGSCAGVFKSGATQMRFQPRLGRI------LAAAIENYISILDVETQVCRLKLQGHKN 723
           +           G T++  Q +LG I      ++ +   +I+ ++ E         GH  
Sbjct: 268 VATLKVEKTIPVG-TRIEDQ-QLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK 325
Query: 724 QVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGEC---IHELSCTGNK 768
            + ++  +  G+ L S   E  +  W I +G        +H    TG K
Sbjct: 326 AITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 374

>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex Length = 401

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 50/272 (18%), Positives = 116/272 (42%), Gaps = 18/272 (6%)
Query: 576 DKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR 634
           ++   +W  +S +V +  E + + ++  V++S   S L+    +  V ++D E+    LR
Sbjct: 112 ERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVES-QTKLR 170
Query: 635 TFTGHSTTV--MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRL 692
           T  GH   V  +S + H           ++ ++R  +   G+  G   S    + ++   
Sbjct: 171 TMAGHQARVGCLSWNRHVLSSGSRSGAIHHHDVRIANHQIGTLQG-HSSEVCGLAWRSDG 229
Query: 693 GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVW 748
            ++ +   +N + I D  + + +     H   V +V W      L +      D+ +  W
Sbjct: 230 LQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW 289
Query: 749 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMTEN---KTLTL 803
           +  +G++   +      G++  S ++ P    ++    +    L +W+ + +   K + +
Sbjct: 290 NAATGARVNTVD----AGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI 345
Query: 804 SAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
            AHD  V   A S    ++++A+ D+ +K W+
Sbjct: 346 PAHDTRVLYSALSPDGRILSTAASDENLKFWR 377

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	835
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3jrp_A	379	Fusion protein of protein transport protein SEC13	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.98
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.98
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3jro_A	753	Fusion protein of protein transport protein SEC13	99.97
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.96
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.95
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.95
3jro_A	753	Fusion protein of protein transport protein SEC13	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.93
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.92
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.92
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.92
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.92
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.91
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.9
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.9
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.9
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.88
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.87
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.86
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.86
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.86
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.86
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.85
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.85
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.85
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.83
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.82
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.81
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.8
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.79
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.78
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.77
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.76
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.76
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.75
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.75
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.74
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.73
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.73
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.7
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.7
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.69
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.68
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.68
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.66
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.66
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.66
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.65
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.64
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.64
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.63
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.62
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.61
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.6
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.6
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.57
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.57
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.57
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.54
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.54
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.52
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.52
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.51
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.5
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.45
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.44
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.42
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.42
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.41
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.4
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.4
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.4
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.38
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.35
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.34
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.34
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.33
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.32
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.25
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.23
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	99.22
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.18
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.18
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.17
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.15
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.14
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.1
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.04
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.04
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	99.02
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.98
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.98
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.94
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.93
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.91
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.9
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.87
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.84
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.83
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.82
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.79
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.78
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.76
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.74
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.73
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.72
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.72
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.72
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.71
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.67
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.66
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.66
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.66
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.64
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.59
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.59
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.56
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.54
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.52
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.51
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.5
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.5
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.46
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.46
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.46
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.45
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.44
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.39
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.38
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.34
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.32
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.31
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.29
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.29
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.28
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.27
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.25
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.21
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.11
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	98.11
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.1
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.06
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.96
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.95
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.94
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.94
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.93
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.89
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.85
3ott_A	758	Two-component system sensor histidine kinase; beta	97.84
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.84
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.81
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.8
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.78
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.76
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.74
3ott_A	758	Two-component system sensor histidine kinase; beta	97.74
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.73
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.69
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.68
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.66
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.64
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.62
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.61
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	97.59
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.53
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.52
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.52
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.5
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.4
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.33
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	97.32
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	97.29
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.27
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.27
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	97.22
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.19
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.15
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.06
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	97.05
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	97.05
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	96.99
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.9
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.89
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.86
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.82
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	96.79
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.7
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.5
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	96.4
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.4
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	96.37
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.34
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	96.12
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.1
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	95.9
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.86
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.8
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.78
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	95.76
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	95.74
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	95.36
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.25
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.96
3iot_A	449	Maltose-binding protein, huntingtin fusion protei;	94.35
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	93.84
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.8
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.33
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	93.2
3uc1_A	327	DNA gyrase subunit A; DNA binding protein, topoiso	92.85
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	90.62
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	89.81
1wp5_A	323	Topoisomerase IV; broken beta-propeller, hairpin-i	89.42
3mvd_K	423	Regulator of chromosome condensation; protein-DNA	89.13
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	88.69
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	87.32
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	87.16
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	86.0
1suu_A	312	DNA gyrase subunit A; topoisomerase,DNA gyrase, be	85.87
3l6v_A	370	GYRA, DNA gyrase subunit A; gyrase A C-terminal do	84.18
3kci_A	389	Probable E3 ubiquitin-protein ligase HERC2; WD40,	84.01
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	83.05
1zi0_A	307	DNA gyrase subunit A; beta pinwheel, topoisomerase	82.97
3no0_A	276	DNA gyrase subunit A; DNA topology, topoisomerase,	81.24
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	80.08

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=4e-42  Score=388.80  Aligned_cols=282  Identities=26%  Similarity=0.493  Sum_probs=265.3

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      ..+.+|.++|++++|+|++.+|++|+.||+|+|||+.+++.+..+.+|.+.|.+++|+|++++|++|+.|++|+|||+.+
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EeecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            45679999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEE
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      .. ++..+.+|...|.+++|+|++. ++++|+.|+.|++||++++.++..+.++   +.++.+++++..+++++.|+.|+
T Consensus       182 ~~-~~~~~~~h~~~V~~v~~~p~~~-~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~  259 (410)
T 1vyh_C          182 FE-CIRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVR  259 (410)
T ss_dssp             SC-EEECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             Cc-eeEEEcCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEE
Confidence            65 4788899999999999999976 6779999999999999999998887643   88899999999999999999999


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCC--------------------CCEEEEEe-CCeEEEEEcCCCCCcceEEEeec
Q 003271          706 ILDVETQVCRLKLQGHKNQVHSVCWNTS--------------------GEYLASVS-DELVRVWSIGSGSKGECIHELSC  764 (835)
Q Consensus       706 IwDl~t~~~i~~l~~h~~~I~sl~fspd--------------------g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~  764 (835)
                      +||++++++...+.+|...|.+++|+|+                    +.+|++++ |+.|++||++++   .++..+.+
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~---~~~~~~~~  336 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVG  336 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEEC
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCC---ceEEEEEC
Confidence            9999999999999999999999999996                    67899999 999999999988   78889999


Q ss_pred             CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          765 TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       765 ~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |...|.+++|+|++.+|++++.|+.|+|||+.+++++ .+.+|...|++++|+|++.+|++|+.||+|+||+
T Consensus       337 h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~  408 (410)
T 1vyh_C          337 HDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  408 (410)
T ss_dssp             CSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEe
Confidence            9999999999999999999999999999999988866 7789999999999999999999999999999997

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=3.2e-41  Score=371.01  Aligned_cols=287  Identities=19%  Similarity=0.371  Sum_probs=262.7

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      .......+.+|.+.|++++|+||+++|++|+.||+|+|||+.+++.+..+..|...|.+++|+|++++|++|+.|+.|++
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~i  123 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI  123 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEE
T ss_pred             cchhheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCC---ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEE
Q 003271          624 WDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILA  697 (835)
Q Consensus       624 WDl~t~~---~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~  697 (835)
                      ||+.+..   .....+.+|...|.++.|++++.  +++++.|+.|++||+++++++..+.   ..+.+++|+|++..+++
T Consensus       124 w~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s  201 (340)
T 1got_B          124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ--IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS  201 (340)
T ss_dssp             EETTTCSBSCEEEEEEECCSSCEEEEEEEETTE--EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred             EECccCCCcceeEEEecCCCccEEEEEECCCCc--EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence            9998754   23567889999999999998753  6789999999999999999888776   34899999999999999


Q ss_pred             EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec--CCCceEEEEE
Q 003271          698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVF  774 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~--~~~~V~sv~f  774 (835)
                      ++.|+.|++||++++.++..+.+|...|.+++|+|++.+|++++ |+.|++||++++   ..+..+..  +...|.+++|
T Consensus       202 g~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~---~~~~~~~~~~~~~~v~~~~~  278 (340)
T 1got_B          202 GACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSF  278 (340)
T ss_dssp             EETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEE
T ss_pred             EeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCC---cEEEEEccCCcccceEEEEE
Confidence            99999999999999999999999999999999999999999999 999999999887   55555442  2347999999


Q ss_pred             eCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          775 HPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       775 spdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++|+.||.|+|||
T Consensus       279 s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          279 SKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            999999999999999999999988877 7789999999999999999999999999999997

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.9e-41  Score=366.18  Aligned_cols=284  Identities=18%  Similarity=0.328  Sum_probs=260.6

Q ss_pred             EEEEecCCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEcCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEECCCe
Q 003271          547 EFQLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRT  620 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~  620 (835)
                      .++.+.+|.+.|++++|+++    +.+|++|+.|++|+||++.+.+.  ...+.+|...|.+++|++++.++++++.|++
T Consensus        24 ~~~~~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~  103 (321)
T 3ow8_A           24 LFKQEQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAH  103 (321)
T ss_dssp             EEEETTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSE
T ss_pred             eeeecccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            45677899999999999985    67899999999999999987654  4578999999999999999999999999999


Q ss_pred             EEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEE
Q 003271          621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILA  697 (835)
Q Consensus       621 I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~  697 (835)
                      |+|||+.+++. +..+..|...+.+++|+|+++ +|++++.|+.|++||+++++....+..   .+.+++|+|++.+|++
T Consensus       104 i~lWd~~~~~~-~~~~~~~~~~~~~~~~spdg~-~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~las  181 (321)
T 3ow8_A          104 IRLWDLENGKQ-IKSIDAGPVDAWTLAFSPDSQ-YLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLAS  181 (321)
T ss_dssp             EEEEETTTTEE-EEEEECCTTCCCCEEECTTSS-EEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEE
T ss_pred             EEEEECCCCCE-EEEEeCCCccEEEEEECCCCC-EEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEE
Confidence            99999998764 777888999999999999976 677999999999999999988777653   4889999999999999


Q ss_pred             EEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271          698 AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  776 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp  776 (835)
                      ++.|+.|++||+++++.+..+.+|...|.+++|+|++.+|++++ |+.|+|||+++.   .++..+.+|...|.+++|+|
T Consensus       182 g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~sp  258 (321)
T 3ow8_A          182 GAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHA---NLAGTLSGHASWVLNVAFCP  258 (321)
T ss_dssp             EETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECT
T ss_pred             EcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCc---ceeEEEcCCCCceEEEEECC
Confidence            99999999999999999999999999999999999999999999 999999999887   67888999999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++.+|++++.|+.|+|||+.+++++ .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       259 ~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd  318 (321)
T 3ow8_A          259 DDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD  318 (321)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence            9999999999999999999999887 6789999999999999999999999999999997

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=8.5e-40  Score=362.34  Aligned_cols=288  Identities=17%  Similarity=0.283  Sum_probs=259.8

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      .......+.+|.+.|+|++|+||+++||+|+.||+|+|||..+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus        53 ~~~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v  132 (354)
T 2pbi_B           53 VMKTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSV  132 (354)
T ss_dssp             CCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEE
T ss_pred             ccEEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCC-----ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEec--CCC
Q 003271          624 WDTENPD-----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQP--RLG  693 (835)
Q Consensus       624 WDl~t~~-----~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp--~~~  693 (835)
                      |++....     .....+..|...|.+++|+|++. .|++++.|++|++||+++++++..+.+   .+.+++|+|  ++.
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~  211 (354)
T 2pbi_B          133 YPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM-QILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN  211 (354)
T ss_dssp             EECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred             EEEeccccccccccceeeeccCCcEEEEEEeCCCC-EEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence            9986432     23466778999999999999976 566999999999999999999888764   377888877  467


Q ss_pred             EEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC--CCceE
Q 003271          694 RILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--GNKFH  770 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~--~~~V~  770 (835)
                      .|++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |++|++||++..   ..+..+..+  ...+.
T Consensus       212 ~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~---~~~~~~~~~~~~~~~~  288 (354)
T 2pbi_B          212 TFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRAD---REVAIYSKESIIFGAS  288 (354)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEE
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCC---cEEEEEcCCCccccee
Confidence            999999999999999999999999999999999999999999999999 999999999886   455444432  34789


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          771 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +++|+|++.+|++++.|+.|+|||+.+++.+ .+.+|...|++++|+|++++|++|+.||+|+||+
T Consensus       289 ~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          289 SVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             EEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999999999999999999999888876 7789999999999999999999999999999997

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=8.7e-41  Score=373.55  Aligned_cols=289  Identities=17%  Similarity=0.341  Sum_probs=259.1

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      .+...+.+.+|.+.|++++|+|++++|++|+.|++|+|||+.+++....+..|...|.+++|+|++++|++|+.|+.|+|
T Consensus        55 ~~~~~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~i  134 (380)
T 3iz6_a           55 DLVCCRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSI  134 (380)
T ss_dssp             CCEEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEE
T ss_pred             eeEEeecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEE
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--------cCceEEEEe
Q 003271          624 WDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--------SGATQMRFQ  689 (835)
Q Consensus       624 WDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--------~~i~~l~fs  689 (835)
                      ||+.+..      .....+.+|...|.++.|.|++...|++|+.|++|++||+.+++.+..+.        ..+.+++|+
T Consensus       135 w~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~  214 (380)
T 3iz6_a          135 FNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSIN  214 (380)
T ss_dssp             EECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEEC
T ss_pred             EECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEee
Confidence            9987532      12456789999999999999877788899999999999999998887662        347888887


Q ss_pred             c-CCCEEEEEEcCCcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC
Q 003271          690 P-RLGRILAAAIENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG  766 (835)
Q Consensus       690 p-~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~  766 (835)
                      + ++..+++++.|+.|++||++ ....+..+.+|...|.+++|+|++.+|++++ |++|++||++++   .++..+..+.
T Consensus       215 ~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~---~~~~~~~~~~  291 (380)
T 3iz6_a          215 SLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTG---HQLQVYNREP  291 (380)
T ss_dssp             SSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTT---EEEEEECCCC
T ss_pred             cCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCC---cEEEEecccc
Confidence            7 77899999999999999998 4577888999999999999999999999999 999999999987   5666554432


Q ss_pred             -------CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Ee----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          767 -------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL----SAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       767 -------~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l----~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                             ..|.+++|+|++++|++++.|+.|++||+..++.+ .+    .+|.+.|++++|+|++.+|++|+.||+|+||
T Consensus       292 ~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW  371 (380)
T 3iz6_a          292 DRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIW  371 (380)
T ss_dssp             SSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             cccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEE
Confidence                   24889999999999999999999999999988876 33    5799999999999999999999999999999


Q ss_pred             C
Q 003271          835 K  835 (835)
Q Consensus       835 d  835 (835)
                      +
T Consensus       372 ~  372 (380)
T 3iz6_a          372 A  372 (380)
T ss_dssp             E
T ss_pred             e
Confidence            6

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=3.4e-39  Score=349.16  Aligned_cols=282  Identities=18%  Similarity=0.309  Sum_probs=252.2

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ...+++.+|.+.|++++|+|++++|++|+.||+|+|||+.++..+..+..|...|.+++|+|++++|++|+.|++|+|||
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-eeeEee---cCceEEEEec-CCCEEEEEEc
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFK---SGATQMRFQP-RLGRILAAAI  700 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~~---~~i~~l~fsp-~~~~ll~~s~  700 (835)
                      +.+++. +..+.+|...|.+++|+|++. ++++|+.|+.|++||++++. ....+.   ..+.+++|+| ++..+++++.
T Consensus        84 ~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           84 YNTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             TTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCCcE-EEEEeCCCCcEEEEEEcCCCC-EEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            998764 788899999999999999976 67799999999999998873 444444   4489999999 5688999999


Q ss_pred             CCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271          701 ENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  776 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fsp--dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp  776 (835)
                      |+.|++||+++......+. +|...+..++|++  ++.+|++++ |+.|++||++++   .++..+.+|...|.+++|+|
T Consensus       162 D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~---~~~~~~~~h~~~v~~~~~~p  238 (304)
T 2ynn_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP  238 (304)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred             CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCC---ccceeeCCCCCCEEEEEECC
Confidence            9999999998876655554 4668899999986  778999999 999999999987   88999999999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCC--EEEEEECCCcEE
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVK  832 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~--~LaSgs~DG~V~  832 (835)
                      ++++|++++.|+.|+|||+.+++++ .+..|...+.+++|+|++.  +|++|+.||.+.
T Consensus       239 ~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~  297 (304)
T 2ynn_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTV  297 (304)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEE
T ss_pred             CCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECCCCCceEEEEecCCceEE
Confidence            9999999999999999999999887 6778899999999999885  688888776543

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=7.5e-39  Score=353.05  Aligned_cols=290  Identities=26%  Similarity=0.453  Sum_probs=249.1

Q ss_pred             eEEEEEecCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE---EeccCCCCeEEEEECCCCCEEEEEECCCe
Q 003271          545 FTEFQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS---TLEEHTQWITDVRFSPSLSRLATSSADRT  620 (835)
Q Consensus       545 ~~~i~~l~gH~~-~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~---~l~~h~~~V~sv~fspdg~~Latgs~Dg~  620 (835)
                      +..+..+.+|.+ .|++++|+|+|++||+|+.|++|+|||+.++....   ...+|...|.+++|+|++++|++|+.|++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~   84 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDAT   84 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCc
Confidence            456788899988 99999999999999999999999999998876432   23689999999999999999999999999


Q ss_pred             EEEEecCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---eeeEee---cCceEEEEecCCC
Q 003271          621 VRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---CAGVFK---SGATQMRFQPRLG  693 (835)
Q Consensus       621 I~IWDl~t~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~---~~~~~~---~~i~~l~fsp~~~  693 (835)
                      |+|||+..... ++..+.+|...|.+++|+|+++ +|++|+.|+.|++||+.++.   ++..+.   ..+.+++|+|++.
T Consensus        85 v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~-~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~  163 (345)
T 3fm0_A           85 TCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGN-LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE  163 (345)
T ss_dssp             EEEEEECCC-EEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS
T ss_pred             EEEEEccCCCeEEEEEccCCCCCceEEEEeCCCC-EEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC
Confidence            99999987653 4678889999999999999976 77799999999999998764   333333   4589999999999


Q ss_pred             EEEEEEcCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------cce
Q 003271          694 RILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC  758 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~------------~~~  758 (835)
                      +|++++.|+.|++||++++.  +...+.+|...|.+++|+|++.+|++++ |++|+|||......            ..+
T Consensus       164 ~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~  243 (345)
T 3fm0_A          164 LLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKC  243 (345)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEE
T ss_pred             EEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccce
Confidence            99999999999999998875  4578889999999999999999999999 99999999754321            123


Q ss_pred             EEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--------EE--EeccCCCCeeEEEEeCCC-CEEEEEE
Q 003271          759 IHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------TL--TLSAHDKLVSSLAASTVN-GMVASAS  826 (835)
Q Consensus       759 i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--------~~--~l~~h~~~V~~la~spdg-~~LaSgs  826 (835)
                      +..+.+ |...|.+++|+|++..|++++.|+.|++|+.....        ..  ...+|...|++++|+|++ .+||+|+
T Consensus       244 ~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s  323 (345)
T 3fm0_A          244 ICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCS  323 (345)
T ss_dssp             EEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEE
T ss_pred             eEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcC
Confidence            445554 78899999999999999999999999999987643        11  235899999999999998 4999999


Q ss_pred             CCCcEEEeC
Q 003271          827 HDKCVKIWK  835 (835)
Q Consensus       827 ~DG~V~IWd  835 (835)
                      .||+|+||+
T Consensus       324 ~Dg~v~~W~  332 (345)
T 3fm0_A          324 DDGEVAFWK  332 (345)
T ss_dssp             TTSCEEEEE
T ss_pred             CCCcEEEEE
Confidence            999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=2.7e-39  Score=384.57  Aligned_cols=304  Identities=21%  Similarity=0.333  Sum_probs=259.2

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF  587 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~  587 (835)
                      .+++|+.|+.|++|..                   .+......+.+|.+.|++++|+|||++||+|+.|++|+|||+.++
T Consensus       162 ~l~s~s~D~~v~lwd~-------------------~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g  222 (611)
T 1nr0_A          162 RIISGSDDNTVAIFEG-------------------PPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG  222 (611)
T ss_dssp             EEEEEETTSCEEEEET-------------------TTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEEEEeCCCeEEEEEC-------------------CCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECCCC
Confidence            6899999999999932                   122446678899999999999999999999999999999999999


Q ss_pred             eEEEEec-------cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce----------------------------
Q 003271          588 TVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----------------------------  632 (835)
Q Consensus       588 ~~i~~l~-------~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~----------------------------  632 (835)
                      +.+..+.       +|.+.|.+++|+|++++|++++.|++|+|||+.+++..                            
T Consensus       223 ~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~  302 (611)
T 1nr0_A          223 TKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISA  302 (611)
T ss_dssp             CEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEET
T ss_pred             cEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEEeC
Confidence            9988884       79999999999999999999999999999999865421                            


Q ss_pred             --------------eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-------------------
Q 003271          633 --------------LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-------------------  679 (835)
Q Consensus       633 --------------~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-------------------  679 (835)
                                    ...+.+|...|.+++|+|+++ +|++++.|+.|++||+.++++...+                   
T Consensus       303 d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~-~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s~~~~l  381 (611)
T 1nr0_A          303 NGFINFVNPELGSIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL  381 (611)
T ss_dssp             TCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE
T ss_pred             CCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCC-EEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEECCCCcE
Confidence                          234457999999999999976 6779999999999999876442211                   


Q ss_pred             ------------------------------------------------------------------ecCceEEEEecCCC
Q 003271          680 ------------------------------------------------------------------KSGATQMRFQPRLG  693 (835)
Q Consensus       680 ------------------------------------------------------------------~~~i~~l~fsp~~~  693 (835)
                                                                                        ...+.+++|+|++.
T Consensus       382 ~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~spdg~  461 (611)
T 1nr0_A          382 FTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQ  461 (611)
T ss_dssp             EEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSC
T ss_pred             EEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEEeCCCC
Confidence                                                                              01245789999999


Q ss_pred             EEEEEEcCCcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE--eecCCCc
Q 003271          694 RILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE--LSCTGNK  768 (835)
Q Consensus       694 ~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~--l~~~~~~  768 (835)
                      ++++++.|+.|++||+.++..  +.. .+|...|.+++|+|+|++|++++ |++|++||+.+..  +++..  +..|...
T Consensus       462 ~lasgs~D~~v~lwd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~--~~~~~~~~~~H~~~  538 (611)
T 1nr0_A          462 FVAVGGQDSKVHVYKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF--ELAHTNSWTFHTAK  538 (611)
T ss_dssp             EEEEEETTSEEEEEEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT--EESCCCCCCCCSSC
T ss_pred             EEEEeCCCCeEEEEEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCC--ceeeeeeeeecccc
Confidence            999999999999999987653  233 56999999999999999999999 9999999998731  33332  3348999


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--E-EEeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          769 FHSCVFHPTFPSLLVIGCYETLELWNMTENK--T-LTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       769 V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--~-~~l~~h-~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |.+++|+|++++|++++.|++|+|||+.++.  . ..+.+| ...|.+++|+|++. |++++.|++|++||
T Consensus       539 V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~  608 (611)
T 1nr0_A          539 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWN  608 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             eeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEe
Confidence            9999999999999999999999999998765  2 356689 89999999999998 99999999999996

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1.3e-38  Score=378.69  Aligned_cols=332  Identities=18%  Similarity=0.282  Sum_probs=269.4

Q ss_pred             ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCc------------------------------ccccccccCCCceeE
Q 003271          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRD------------------------------RVGRSAEVGKGFTFT  546 (835)
Q Consensus       497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~------------------------------~~~~~~~~~~g~~~~  546 (835)
                      +....+.+...++++|+.|++|++|..........                              ..+.++.+..+   .
T Consensus        62 v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~---~  138 (611)
T 1nr0_A           62 TTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---T  138 (611)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---C
T ss_pred             eEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeCC---C
Confidence            34455666678999999999999997543211000                              00011111111   1


Q ss_pred             EEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          547 EFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ....+.+|.+.|++++|+|++. +|++|+.|++|++||..+++++..+.+|...|.+++|+|++++|++++.|++|+|||
T Consensus       139 ~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd  218 (611)
T 1nr0_A          139 SNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYN  218 (611)
T ss_dssp             BCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEE
Confidence            2345789999999999999987 599999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEee-------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee------------------
Q 003271          626 TENPDYSLRTFT-------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------------------  680 (835)
Q Consensus       626 l~t~~~~~~~~~-------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~------------------  680 (835)
                      +.++.. +..+.       +|...|.+++|+|++. +|++++.|++|++||+.+++++..+.                  
T Consensus       219 ~~~g~~-~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (611)
T 1nr0_A          219 GVDGTK-TGVFEDDSLKNVAHSGSVFGLTWSPDGT-KIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQA  296 (611)
T ss_dssp             TTTCCE-EEECBCTTSSSCSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSC
T ss_pred             CCCCcE-eeeeccccccccccCCCEEEEEECCCCC-EEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCE
Confidence            988764 45553       7999999999999976 67799999999999999887654331                  


Q ss_pred             ----------------------------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE-c------------
Q 003271          681 ----------------------------SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL-Q------------  719 (835)
Q Consensus       681 ----------------------------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l-~------------  719 (835)
                                                  ..+.+++|+|++.+|++++.|+.|++||+.++.+...+ .            
T Consensus       297 l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~~~~h~~~v~~~~~s  376 (611)
T 1nr0_A          297 LVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT  376 (611)
T ss_dssp             EEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC
T ss_pred             EEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeecccCCcceEEEEEEC
Confidence                                        23788999999999999999999999999876543221 0            


Q ss_pred             ---------------------------------------------------------------------CCCCCeEEEEE
Q 003271          720 ---------------------------------------------------------------------GHKNQVHSVCW  730 (835)
Q Consensus       720 ---------------------------------------------------------------------~h~~~I~sl~f  730 (835)
                                                                                           .|...+.+++|
T Consensus       377 ~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~~~~~~~~~~~~~v~~va~  456 (611)
T 1nr0_A          377 SKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVAL  456 (611)
T ss_dssp             TTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEE
T ss_pred             CCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeCCCcEEEEEeCceEEEEeCCceeeeecCCCceEEEE
Confidence                                                                                 02345778999


Q ss_pred             cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC-CcEEE---ecc
Q 003271          731 NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE-NKTLT---LSA  805 (835)
Q Consensus       731 spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~-~~~~~---l~~  805 (835)
                      +|+|++|++++ |+.|++||+.+... ..+.. ..|...|.+++|+|++++|++++.|++|++||+.+ +++..   ...
T Consensus       457 spdg~~lasgs~D~~v~lwd~~~~~~-~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~  534 (611)
T 1nr0_A          457 SNDKQFVAVGGQDSKVHVYKLSGASV-SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTF  534 (611)
T ss_dssp             CTTSCEEEEEETTSEEEEEEEETTEE-EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCC
T ss_pred             eCCCCEEEEeCCCCeEEEEEccCCce-eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeee
Confidence            99999999999 99999999987521 22333 67899999999999999999999999999999987 55442   234


Q ss_pred             CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          806 HDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       806 h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |...|.+++|+||+++||+|+.|++|+|||
T Consensus       535 H~~~V~~v~fspdg~~lasgs~D~~v~lW~  564 (611)
T 1nr0_A          535 HTAKVACVSWSPDNVRLATGSLDNSVIVWN  564 (611)
T ss_dssp             CSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cccceeEEEECCCCCEEEEEECCCcEEEEE
Confidence            999999999999999999999999999996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=3.2e-38  Score=344.19  Aligned_cols=286  Identities=19%  Similarity=0.349  Sum_probs=249.8

Q ss_pred             CceeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEE
Q 003271          542 GFTFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATS  615 (835)
Q Consensus       542 g~~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~i~~l~~h~~~V~sv~fspdg~~Latg  615 (835)
                      ...+.....+.+|.+.|++++|+|++ ++|++|+.|++|++|++.+     +..+..+.+|...|.+++|+|++++|++|
T Consensus         4 ~~~~~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~   83 (319)
T 3frx_A            4 NEVLVLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSA   83 (319)
T ss_dssp             CEEEEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEE
Confidence            34566778899999999999999965 8999999999999999863     34577889999999999999999999999


Q ss_pred             ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecC-
Q 003271          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPR-  691 (835)
Q Consensus       616 s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~-  691 (835)
                      +.|++|+|||+.+++ .+..+.+|...|.+++|+|++. ++++|+.|+.|++||++. .++..+.   ..+.+++|.|. 
T Consensus        84 s~D~~v~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~  160 (319)
T 3frx_A           84 SWDKTLRLWDVATGE-TYQRFVGHKSDVMSVDIDKKAS-MIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNE  160 (319)
T ss_dssp             ETTSEEEEEETTTTE-EEEEEECCSSCEEEEEECTTSC-EEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC-
T ss_pred             eCCCEEEEEECCCCC-eeEEEccCCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCC
Confidence            999999999999876 4788899999999999999976 777999999999999975 4444443   34788999885 


Q ss_pred             -----CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC
Q 003271          692 -----LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT  765 (835)
Q Consensus       692 -----~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~  765 (835)
                           +..+++++.|+.|++||+++.+....+.+|...|.+++|+|++.+|++++ |+.|+|||+.++   .++..+.. 
T Consensus       161 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~---~~~~~~~~-  236 (319)
T 3frx_A          161 KADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAK---KAMYTLSA-  236 (319)
T ss_dssp             -----CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-
T ss_pred             CCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---cEEEEecC-
Confidence                 34899999999999999999999999999999999999999999999999 999999999987   67777765 


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-e--------ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          766 GNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L--------SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       766 ~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l--------~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ...|.+++|+|++.+|++++. +.|++|++.....+. +        ..|...|.+++|+|||++|++|+.||.|+|||
T Consensus       237 ~~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd  314 (319)
T 3frx_A          237 QDEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQ  314 (319)
T ss_dssp             CSCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEE
Confidence            468999999999998877765 469999998877652 2        23567799999999999999999999999996

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=3.2e-38  Score=341.15  Aligned_cols=286  Identities=24%  Similarity=0.459  Sum_probs=257.5

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      +.....+.+|.+.|++++|+|++++|++|+.||.|+||++.+++....+.+|...|.+++|+|++++|++++.|+.|+||
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vw   92 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIW   92 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEE
Confidence            45567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d  701 (835)
                      |+.+++ .+..+.+|...|.+++|+|++. ++++|+.|+.|++||+++++++..+.   ..+.+++|+|++..+++++.|
T Consensus        93 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  170 (312)
T 4ery_A           93 DVSSGK-CLKTLKGHSNYVFCCNFNPQSN-LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYD  170 (312)
T ss_dssp             ETTTCC-EEEEEECCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ECCCCc-EEEEEcCCCCCEEEEEEcCCCC-EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            999876 4788899999999999999976 77799999999999999998887775   348899999999999999999


Q ss_pred             CcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE---EEEEeC
Q 003271          702 NYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH---SCVFHP  776 (835)
Q Consensus       702 g~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~---sv~fsp  776 (835)
                      +.|++||+++++.+..+. .+...+.+++|+|++.+|++++ |+.|++||++++   +++..+..|...+.   .....+
T Consensus       171 ~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~  247 (312)
T 4ery_A          171 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKTYTGHKNEKYCIFANFSVT  247 (312)
T ss_dssp             SCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTT---EEEEEECSSCCSSSCCCEEEECS
T ss_pred             CcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCC---cEEEEEEecCCceEEEEEEEEeC
Confidence            999999999998887764 4667899999999999999999 999999999987   77777877765432   223346


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEE--CCCcEEEeC
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASAS--HDKCVKIWK  835 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs--~DG~V~IWd  835 (835)
                      ++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|+|++.+|++++  .|+.|+||+
T Consensus       248 ~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~  309 (312)
T 4ery_A          248 GGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWK  309 (312)
T ss_dssp             SSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEE
T ss_pred             CCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEec
Confidence            7889999999999999999999887 7789999999999999999999997  699999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-38  Score=354.17  Aligned_cols=280  Identities=28%  Similarity=0.458  Sum_probs=248.0

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC------------------CeEEEEECCCCCEEEE
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ------------------WITDVRFSPSLSRLAT  614 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~------------------~V~sv~fspdg~~Lat  614 (835)
                      +|.+.|+|++|+|||++||+|+ ++.++||++.+++.+..+..|..                  .|.+++|+|++++|++
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s  140 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLAT  140 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEE
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEE
Confidence            6999999999999999999986 78999999999999888765542                  4999999999999999


Q ss_pred             EECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEec-C
Q 003271          615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQP-R  691 (835)
Q Consensus       615 gs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp-~  691 (835)
                      |+.|+.|+|||+.+++ .+..+.+|...|.+++|+|++. +|++++.|+.|++||++++++...+.  ..+.+++|+| +
T Consensus       141 ~~~d~~i~iwd~~~~~-~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~  218 (393)
T 1erj_A          141 GAEDRLIRIWDIENRK-IVMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGD  218 (393)
T ss_dssp             EETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTT
T ss_pred             EcCCCeEEEEECCCCc-EEEEEccCCCCEEEEEEcCCCC-EEEEecCCCcEEEEECCCCeeEEEEEcCCCcEEEEEECCC
Confidence            9999999999999865 4778899999999999999976 66799999999999999998877665  4588999999 8


Q ss_pred             CCEEEEEEcCCcEEEEECCCCeEEEEE-------cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC--------
Q 003271          692 LGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK--------  755 (835)
Q Consensus       692 ~~~ll~~s~dg~I~IwDl~t~~~i~~l-------~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~--------  755 (835)
                      +.++++++.|+.|++||++++..+..+       .+|...|.+++|+|++.+|++++ |+.|++||+++...        
T Consensus       219 ~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~  298 (393)
T 1erj_A          219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN  298 (393)
T ss_dssp             CCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC-------------
T ss_pred             CCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCC
Confidence            899999999999999999999887776       57899999999999999999999 99999999976421        


Q ss_pred             -cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeC------CCCEEEEEEC
Q 003271          756 -GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAST------VNGMVASASH  827 (835)
Q Consensus       756 -~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~sp------dg~~LaSgs~  827 (835)
                       ..+...+.+|...|.+++|+|++.+|++++.|+.|++||+.+++.+ .+.+|...|.+++|++      ++.+|++|+.
T Consensus       299 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~  378 (393)
T 1erj_A          299 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSG  378 (393)
T ss_dssp             --CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEET
T ss_pred             CCcceEEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECC
Confidence             2456678889999999999999999999999999999999999877 7789999999999986      6789999999


Q ss_pred             CCcEEEeC
Q 003271          828 DKCVKIWK  835 (835)
Q Consensus       828 DG~V~IWd  835 (835)
                      ||+|+|||
T Consensus       379 Dg~i~iW~  386 (393)
T 1erj_A          379 DCKARIWK  386 (393)
T ss_dssp             TSEEEEEE
T ss_pred             CCcEEECc
Confidence            99999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=1.2e-37  Score=342.61  Aligned_cols=285  Identities=19%  Similarity=0.361  Sum_probs=242.5

Q ss_pred             eeEEEEEecCCCCCEEEEEE-----eC-CCCEEEEEeCCCeEEEEEcCC-------CeEEEEeccCCCCeEEEEECCCCC
Q 003271          544 TFTEFQLIPASTSKVESCHF-----SP-DGKLLATGGHDKKAVLWCTES-------FTVKSTLEEHTQWITDVRFSPSLS  610 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~f-----Sp-dg~~Lasgs~Dg~I~VWd~~t-------~~~i~~l~~h~~~V~sv~fspdg~  610 (835)
                      .+.....+.+|.+.|++++|     ++ |+++|++|+.|++|+|||+.+       +.....+.+|...|.+++|+|++.
T Consensus        10 ~~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~   89 (343)
T 2xzm_R           10 QVVKRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC   89 (343)
T ss_dssp             EEEEEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT
T ss_pred             EeeeeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC
Confidence            44567789999999999999     76 999999999999999999874       356778899999999999999999


Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-----eecCceE
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-----FKSGATQ  685 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-----~~~~i~~  685 (835)
                      +|++|+.|++|+|||+.++. .+..+.+|...|.+++|+|++. +|++++.|+.|++||+........     ....+.+
T Consensus        90 ~l~s~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~v~~sp~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~  167 (343)
T 2xzm_R           90 FAISSSWDKTLRLWDLRTGT-TYKRFVGHQSEVYSVAFSPDNR-QILSAGAEREIKLWNILGECKFSSAEKENHSDWVSC  167 (343)
T ss_dssp             EEEEEETTSEEEEEETTSSC-EEEEEECCCSCEEEEEECSSTT-EEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEE
T ss_pred             EEEEEcCCCcEEEEECCCCc-EEEEEcCCCCcEEEEEECCCCC-EEEEEcCCCEEEEEeccCCceeeeecccCCCceeee
Confidence            99999999999999999876 4788899999999999999976 667899999999999984433222     2234889


Q ss_pred             EEEecCC----------CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271          686 MRFQPRL----------GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       686 l~fsp~~----------~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~  754 (835)
                      ++|+|++          .++++++.|+.|++|| ........+.+|...|.+++|+|+|++|++++ |+.|++||+....
T Consensus       168 ~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~  246 (343)
T 2xzm_R          168 VRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLT  246 (343)
T ss_dssp             EEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCS
T ss_pred             eeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCc
Confidence            9999987          6899999999999999 45677778889999999999999999999999 9999999995542


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE---Eec-----------cCCCCeeEEEEeCCCC
Q 003271          755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TLS-----------AHDKLVSSLAASTVNG  820 (835)
Q Consensus       755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l~-----------~h~~~V~~la~spdg~  820 (835)
                        .....+ .+...|.+++|+|++.+++ ++.|+.|++||+.+++..   .+.           +|...|.+++|+|+++
T Consensus       247 --~~~~~~-~~~~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~  322 (343)
T 2xzm_R          247 --YPQREF-DAGSTINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWNALGK  322 (343)
T ss_dssp             --SCSEEE-ECSSCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEECSSSC
T ss_pred             --ccceee-cCCCcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEECCCCC
Confidence              223333 2456799999999998665 556888999999876532   222           6888999999999999


Q ss_pred             EEEEEECCCcEEEeC
Q 003271          821 MVASASHDKCVKIWK  835 (835)
Q Consensus       821 ~LaSgs~DG~V~IWd  835 (835)
                      +|++|+.||.|++|+
T Consensus       323 ~l~sg~~Dg~v~~w~  337 (343)
T 2xzm_R          323 KLFAGFTDGVIRTFS  337 (343)
T ss_dssp             CEEEEETTSEEEEEE
T ss_pred             eEEEecCCceEEEEE
Confidence            999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2e-37  Score=362.95  Aligned_cols=306  Identities=27%  Similarity=0.454  Sum_probs=268.9

Q ss_pred             ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003271          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (835)
Q Consensus       500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I  579 (835)
                      ..+......+++++.|+.+++|...                 +   ..+..+.+|...|++++|+|++++|++++.|+.|
T Consensus       268 v~~~~d~~~l~~~~~d~~i~~w~~~-----------------~---~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i  327 (577)
T 2ymu_A          268 VAFRPDGQTIASASDDKTVKLWNRN-----------------G---QLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTV  327 (577)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETT-----------------S---CEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEcCCCCEEEEEeCCCEEEEEeCC-----------------C---cEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeE
Confidence            3445556789999999999999421                 1   2345678999999999999999999999999999


Q ss_pred             EEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271          580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sg  659 (835)
                      ++||... ..+..+.+|...|.+++|+|++++|++++.|+.|++||... . .+..+.+|...|.+++|+|+++ +|+++
T Consensus       328 ~~w~~~~-~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-~-~~~~~~~~~~~v~~~~~s~dg~-~l~~~  403 (577)
T 2ymu_A          328 KLWNRNG-QHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-Q-LLQTLTGHSSSVRGVAFSPDGQ-TIASA  403 (577)
T ss_dssp             EEEETTS-CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-C-EEEEEECCSSCEEEEEECTTSS-CEEEE
T ss_pred             EEEeCCC-CeeEEEeCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-C-EEEEecCCCCCeEEEEECCCCC-EEEEE
Confidence            9999865 45667889999999999999999999999999999999653 3 4788889999999999999987 56688


Q ss_pred             eCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          660 DNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       660 s~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                      +.|+.|++||.. ++.+..+.   ..+.+++|+|++..+++++.|+.|++||. +++.+..+.+|...|.+++|+|++++
T Consensus       404 ~~d~~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~  481 (577)
T 2ymu_A          404 SDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQT  481 (577)
T ss_dssp             ETTSEEEEECTT-CCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCE
T ss_pred             eCCCEEEEEeCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence            999999999964 55555554   45889999999999999999999999996 56778888899999999999999999


Q ss_pred             EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEE
Q 003271          737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA  815 (835)
Q Consensus       737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~  815 (835)
                      |++++ |+.|++||.. +   +++..+.+|...|++++|+|++++|++++.|+.|+|||.....+..+.+|.+.|++++|
T Consensus       482 las~~~d~~i~iw~~~-~---~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~~~~~~~~~~~h~~~v~~~~f  557 (577)
T 2ymu_A          482 IASASDDKTVKLWNRN-G---QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAF  557 (577)
T ss_dssp             EEEEETTSEEEEEETT-S---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEeCCCEEEEEcCC-C---CEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeCCCCEEEEEcCCCCCEEEEEE
Confidence            99999 9999999953 3   68888999999999999999999999999999999999755444588899999999999


Q ss_pred             eCCCCEEEEEECCCcEEEeC
Q 003271          816 STVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       816 spdg~~LaSgs~DG~V~IWd  835 (835)
                      +||+++|+|++.|++|+|||
T Consensus       558 s~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          558 SPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             CTTSSCEEEEETTSCEEEEC
T ss_pred             cCCCCEEEEEeCCCEEEEeC
Confidence            99999999999999999998

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=2.1e-38  Score=351.69  Aligned_cols=279  Identities=13%  Similarity=0.158  Sum_probs=235.8

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEeC------CCeEEEEEcCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q 003271          552 PASTSKVESCHFSPDGKLLATGGH------DKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs~------Dg~I~VWd~~t~~~i----~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I  621 (835)
                      ..|...|++++|+|||++||+|+.      |+.|++|+..++...    ....+|...|++++|+|++. +++++.||+|
T Consensus        39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v  117 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAV  117 (357)
T ss_dssp             -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCE
T ss_pred             ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEE
Confidence            479999999999999999999997      788999998776543    33356889999999999975 5677899999


Q ss_pred             EEEecCCCCce---eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCC-E
Q 003271          622 RVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLG-R  694 (835)
Q Consensus       622 ~IWDl~t~~~~---~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~-~  694 (835)
                      +|||+.+++..   .....+|...|.+++|+|+++ +|++|+.|+.|++||+++++++..+..   .+.+++|++++. .
T Consensus       118 ~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~-~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~  196 (357)
T 4g56_B          118 ELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT-QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTI  196 (357)
T ss_dssp             EEC--------CCCCEEECCCSSCEEEEEECSSSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSC
T ss_pred             EEeeccccceeEEEeeccCCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCce
Confidence            99999876532   134457999999999999976 677999999999999999999888764   488999999875 6


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271          695 ILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  770 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l--~~h~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~  770 (835)
                      +++++.|+.|++||++++++...+  ..|...+.+++|+|+ +.+|++++ |+.|++||++++   .++..+..|...|.
T Consensus       197 ~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~---~~~~~~~~~~~~v~  273 (357)
T 4g56_B          197 FLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNP---DSAQTSAVHSQNIT  273 (357)
T ss_dssp             EEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCG---GGCEEECCCSSCEE
T ss_pred             eeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCC---cEeEEEeccceeEE
Confidence            888999999999999998776554  346778999999997 46788888 999999999987   77888999999999


Q ss_pred             EEEEeCCC-CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003271          771 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK  835 (835)
Q Consensus       771 sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~sp-dg~~LaSgs~DG~V~IWd  835 (835)
                      +++|+|++ ++|++++.|++|+|||+.+++++...+|.+.|++|+|+| ++.+|++|+.||+|+|||
T Consensus       274 ~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~  340 (357)
T 4g56_B          274 GLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHH  340 (357)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEE
Confidence            99999987 578899999999999999999998889999999999998 789999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=3.5e-38  Score=348.68  Aligned_cols=277  Identities=15%  Similarity=0.220  Sum_probs=234.4

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-----------eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-----------~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I  621 (835)
                      .|...|.+++|+|||++|++++ |+++++||....           ........|...|.+++|+|++ .|++|+.||+|
T Consensus        28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~l~~~s~dg~v  105 (344)
T 4gqb_B           28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-GILVASDSGAV  105 (344)
T ss_dssp             SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEEEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-EEEEEETTSEE
T ss_pred             cccCCEEEEEECCCCCEEEEEe-CCceEEeeceeeeeccccccCCcceeeeeeccCCCEEEEEEeCCC-eEEEEECCCEE
Confidence            5667799999999999999887 778888863210           1111122356789999999985 78899999999


Q ss_pred             EEEecCCCCcee---EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCC-E
Q 003271          622 RVWDTENPDYSL---RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLG-R  694 (835)
Q Consensus       622 ~IWDl~t~~~~~---~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~-~  694 (835)
                      +|||+.+++...   ....+|...|.+++|+|+++ +|++|+.|+.|++||+++++++..+.+   .+.+++|++++. .
T Consensus       106 ~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~-~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~  184 (344)
T 4gqb_B          106 ELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT-QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSV  184 (344)
T ss_dssp             EEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTE
T ss_pred             EEEeccCCCceeEeeccccCCCCCEEEEEECCCCC-EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCc
Confidence            999999876432   33558999999999999976 677999999999999999999988764   489999999985 6


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271          695 ILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  770 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~  770 (835)
                      +++++.|+.|++||++++++...+.  .|...+.+++|+|+ +.+|++++ |+.|+|||++++   +++..+.+|...|+
T Consensus       185 l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~---~~~~~~~~h~~~v~  261 (344)
T 4gqb_B          185 FLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKST---SCVLSSAVHSQCVT  261 (344)
T ss_dssp             EEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC-----CCEEEECCSSCEE
T ss_pred             eeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCC---cEEEEEcCCCCCEE
Confidence            7889999999999999998887764  35667999999985 57888888 999999999988   78889999999999


Q ss_pred             EEEEeCCC-CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003271          771 SCVFHPTF-PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  835 (835)
Q Consensus       771 sv~fspdg-~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs~DG~V~IWd  835 (835)
                      +++|+|++ .+|++++.|++|+|||+.+++++.+.+|.+.|++++|+|++. +|++|+.||+|++|+
T Consensus       262 ~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~D~~v~~w~  328 (344)
T 4gqb_B          262 GLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHV  328 (344)
T ss_dssp             EEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEE
T ss_pred             EEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcCCCeEEEEE
Confidence            99999998 578999999999999999999999999999999999999986 678999999999995

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-37  Score=340.27  Aligned_cols=287  Identities=21%  Similarity=0.337  Sum_probs=235.9

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC--eEEEEe-cc-CCCCeEEEEECCCCCEEEEEECCCe
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTL-EE-HTQWITDVRFSPSLSRLATSSADRT  620 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~i~~l-~~-h~~~V~sv~fspdg~~Latgs~Dg~  620 (835)
                      +..+..+.+|.+.|++++|+++  +||+|+.|++|+|||+.++  ..+..+ .+ |...|.+++|+|++.+|++|+.|++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~   81 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDST   81 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSC
T ss_pred             cccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCc
Confidence            3467788999999999999988  9999999999999999874  555666 44 9999999999999999999999999


Q ss_pred             EEEEecCCCC------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEee---cCceEEE
Q 003271          621 VRVWDTENPD------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK---SGATQMR  687 (835)
Q Consensus       621 I~IWDl~t~~------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~---~~i~~l~  687 (835)
                      |+|||+....      ..+..+.+|...|.+++|+|++. +|++|+.|+.|++||++..    +++..+.   ..+.+++
T Consensus        82 v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~-~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~  160 (330)
T 2hes_X           82 VSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY-YLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVI  160 (330)
T ss_dssp             EEEEEC-------CCCEEEEEEC----CEEEEEECTTSC-EEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEE
T ss_pred             EEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEE
Confidence            9999986421      24567889999999999999976 7779999999999999432    4455544   4589999


Q ss_pred             EecCCCEEEEEEcCCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCC--CCEEEEEe-CCeEEEEEcCCCCCc-----c
Q 003271          688 FQPRLGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTS--GEYLASVS-DELVRVWSIGSGSKG-----E  757 (835)
Q Consensus       688 fsp~~~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspd--g~~Lasgs-Dg~I~IwDl~t~~~~-----~  757 (835)
                      |+|++..|++++.|+.|++||+.++  +++..+.+|...|.+++|+|+  +.+|++++ |++|++||+......     .
T Consensus       161 ~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~  240 (330)
T 2hes_X          161 WHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWV  240 (330)
T ss_dssp             ECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEE
T ss_pred             ECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeE
Confidence            9999999999999999999999876  678889999999999999998  77899988 999999999764211     2


Q ss_pred             eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcE--E--EeccCCC-CeeEEEEeC--CCCEEEEEECCC
Q 003271          758 CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKT--L--TLSAHDK-LVSSLAAST--VNGMVASASHDK  829 (835)
Q Consensus       758 ~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~--~--~l~~h~~-~V~~la~sp--dg~~LaSgs~DG  829 (835)
                      +...+.. |...|.+++|++++ +|++++.|+.|+|||..+++.  .  ....|.. .|.+++|+|  ++.+|++|+.||
T Consensus       241 ~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg  319 (330)
T 2hes_X          241 CEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDG  319 (330)
T ss_dssp             EEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTS
T ss_pred             EeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCC
Confidence            3444444 88899999999765 799999999999999988742  3  2357877 899999999  688999999999


Q ss_pred             cEEEeC
Q 003271          830 CVKIWK  835 (835)
Q Consensus       830 ~V~IWd  835 (835)
                      +|+|||
T Consensus       320 ~v~~W~  325 (330)
T 2hes_X          320 IVNFWS  325 (330)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999996

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-37  Score=333.82  Aligned_cols=283  Identities=17%  Similarity=0.249  Sum_probs=254.5

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      .....+.+|.+.|++++|+|++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|++||
T Consensus        23 ~~~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd  102 (369)
T 3zwl_B           23 MKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWD  102 (369)
T ss_dssp             EEEEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEE
T ss_pred             cccEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEE
Confidence            34566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeee-----------Eee---c--Cce
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAG-----------VFK---S--GAT  684 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~-----------~~~---~--~i~  684 (835)
                      +.+++. +..+. +...|.+++|+|++. ++++++.+     +.|++||+.......           .+.   .  .+.
T Consensus       103 ~~~~~~-~~~~~-~~~~v~~~~~~~~~~-~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  179 (369)
T 3zwl_B          103 VSNGQC-VATWK-SPVPVKRVEFSPCGN-YFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT  179 (369)
T ss_dssp             TTTCCE-EEEEE-CSSCEEEEEECTTSS-EEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE
T ss_pred             CCCCcE-EEEee-cCCCeEEEEEccCCC-EEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee
Confidence            998764 55555 889999999999987 55567777     999999997654221           111   1  688


Q ss_pred             EEEEecCCCEEEEEEcCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe
Q 003271          685 QMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL  762 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l  762 (835)
                      +++|+|++..+++++.|+.|++||+++ ...+..+..|...|.+++|+|++.+|++++ |+.|++||++++   ..+..+
T Consensus       180 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---~~~~~~  256 (369)
T 3zwl_B          180 VAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---QVLKKY  256 (369)
T ss_dssp             EEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEE
T ss_pred             EEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCC---ceeeee
Confidence            999999999999999999999999999 788889999999999999999999999999 999999999987   566666


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCC--------------eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          763 SCTGNKFHSCVFHPTFPSLLVIGCYE--------------TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       763 ~~~~~~V~sv~fspdg~~L~sgs~dg--------------~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                      . +...+..++|+|++.++++++.++              .|++||+.+++.+ .+.+|...|++++|+|++++|++++.
T Consensus       257 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~  335 (369)
T 3zwl_B          257 E-TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGE  335 (369)
T ss_dssp             E-CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET
T ss_pred             c-CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEECCCCCEEEEEcC
Confidence            5 678899999999999999999988              8999999999887 67789999999999999999999999


Q ss_pred             CCcEEEeC
Q 003271          828 DKCVKIWK  835 (835)
Q Consensus       828 DG~V~IWd  835 (835)
                      ||.|+|||
T Consensus       336 dg~v~iw~  343 (369)
T 3zwl_B          336 DGFIRLHH  343 (369)
T ss_dssp             TSEEEEEE
T ss_pred             CCeEEEEE
Confidence            99999996

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=7.4e-37  Score=334.20  Aligned_cols=270  Identities=20%  Similarity=0.286  Sum_probs=246.7

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ...++++|+.|+.|++|....                 ........+.+|...|.+++|++++.++++++.|++|+|||+
T Consensus        47 ~~~~l~tgs~D~~v~vW~~~~-----------------~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~  109 (321)
T 3ow8_A           47 NSETVVTGSLDDLVKVWKWRD-----------------ERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDL  109 (321)
T ss_dssp             --CEEEEEETTSCEEEEEEET-----------------TEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEcCCCCEEEEECCC-----------------CCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEEC
Confidence            346899999999999994321                 122345568899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      .+++.+..+..|...+.+++|+|++++|++++.|+.|++||+.++.. ...+..|...|.+++|+|+++ +|++|+.|+.
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~-~~~~~~~~~~v~~~~~spdg~-~lasg~~dg~  187 (321)
T 3ow8_A          110 ENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKK-EYSLDTRGKFILSIAYSPDGK-YLASGAIDGI  187 (321)
T ss_dssp             TTTEEEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSE-EEEEECSSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCCEEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCce-eEEecCCCceEEEEEECCCCC-EEEEEcCCCe
Confidence            99999999999999999999999999999999999999999998764 667788899999999999986 6779999999


Q ss_pred             EEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271          665 IRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      |++||+++++.+..+..   .+.+++|+|++.+|++++.|+.|++||++++..+..+.+|...|.+++|+|++.+|++++
T Consensus       188 i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s  267 (321)
T 3ow8_A          188 INIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSS  267 (321)
T ss_dssp             EEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEe
Confidence            99999999999887764   489999999999999999999999999999999999999999999999999999999999


Q ss_pred             -CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          742 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       742 -Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                       |+.|+|||+.++   .++..+..|...|.+++|+|++.+|++++.|+.|+|||+.
T Consensus       268 ~D~~v~iwd~~~~---~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~p  320 (321)
T 3ow8_A          268 SDKSVKVWDVGTR---TCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDCP  320 (321)
T ss_dssp             TTSCEEEEETTTT---EEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEECC
T ss_pred             CCCcEEEEeCCCC---EEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeCC
Confidence             999999999987   8899999999999999999999999999999999999963

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=2.3e-37  Score=349.76  Aligned_cols=266  Identities=24%  Similarity=0.461  Sum_probs=243.7

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      .++++|+.|+.|++|.....                   .....+.+|.+.|++++|+|++++|++|+.|++|+|||+.+
T Consensus       121 ~~l~s~s~Dg~i~vwd~~~~-------------------~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~  181 (410)
T 1vyh_C          121 SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG  181 (410)
T ss_dssp             SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             CEEEEEeCCCeEEEEECCCC-------------------cEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCC
Confidence            68999999999999954332                   12456789999999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      ++++..+.+|...|.+++|+|++.+|++|+.|++|++||+.++. ++..+.+|...|.++.|++++. ++++|+.|+.|+
T Consensus       182 ~~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~g~-~l~s~s~D~~v~  259 (410)
T 1vyh_C          182 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGY-CVKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVR  259 (410)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             CceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCc-EEEEEeCCCccEEEEEECCCCC-EEEEEcCCCeEE
Confidence            99999999999999999999999999999999999999999876 4788999999999999999976 778999999999


Q ss_pred             EEECCCCeeeeEeec---CceEEEEecC--------------------CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271          667 YWSINNGSCAGVFKS---GATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       667 iwDl~s~~~~~~~~~---~i~~l~fsp~--------------------~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~  723 (835)
                      +||+.++++...+..   .+.+++|+|+                    +.++++++.|+.|++||++++.++..+.+|..
T Consensus       260 vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~  339 (410)
T 1vyh_C          260 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  339 (410)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCC
Confidence            999999988877653   4889999996                    56899999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      .|.+++|+|++.+|++++ |+.|+|||+.++   .++..+..|...|.+++|+|++.+|++++.|+.|+||+++
T Consensus       340 ~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r  410 (410)
T 1vyh_C          340 WVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWECR  410 (410)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---ceEEEEcCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence            999999999999999999 999999999887   6788889999999999999999999999999999999863

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=3.5e-36  Score=326.61  Aligned_cols=285  Identities=19%  Similarity=0.340  Sum_probs=246.1

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCC-----eEEEEeccCCCCeEEEEECCCCCEEEEEEC
Q 003271          544 TFTEFQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTESF-----TVKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~-----~~i~~l~~h~~~V~sv~fspdg~~Latgs~  617 (835)
                      .+....+|+||.+.|++|+|+|+ +++||||+.|++|+|||+.+.     .....+.+|...|.+++|+|++++|++++.
T Consensus        27 ~~~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~  106 (340)
T 4aow_A           27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSW  106 (340)
T ss_dssp             EEEEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence            44556689999999999999997 689999999999999998754     356788999999999999999999999999


Q ss_pred             CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe----ecCceEEEEecCC-
Q 003271          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KSGATQMRFQPRL-  692 (835)
Q Consensus       618 Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~~~i~~l~fsp~~-  692 (835)
                      |+.|++|+...... ......+...+..+.+++++. ++++++.|+.+++||+.........    ...+..++|++++ 
T Consensus       107 d~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~  184 (340)
T 4aow_A          107 DGTLRLWDLTTGTT-TRRFVGHTKDVLSVAFSSDNR-QIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSS  184 (340)
T ss_dssp             TSEEEEEETTTTEE-EEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSS
T ss_pred             cccceEEeecccce-eeeecCCCCceeEEEEeecCc-cceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCC
Confidence            99999999997654 666777888899999999876 5668999999999999876554332    2447788888765 


Q ss_pred             -CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271          693 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  770 (835)
Q Consensus       693 -~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~  770 (835)
                       ..+++++.|+.|++||+++++.+..+.+|...|.+++|+|++++|++++ |+.|++||+++.   ..+..+.. ...|.
T Consensus       185 ~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~---~~~~~~~~-~~~v~  260 (340)
T 4aow_A          185 NPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG---KHLYTLDG-GDIIN  260 (340)
T ss_dssp             SCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT---EEEEEEEC-SSCEE
T ss_pred             CcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC---ceeeeecC-CceEE
Confidence             5678889999999999999999999999999999999999999999999 999999999987   66666664 56899


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE----------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          771 SCVFHPTFPSLLVIGCYETLELWNMTENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~----------~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +++|+|++. +++++.|+.|+|||++++..+          ....|...|++++|+|++++|++|+.||.|+|||
T Consensus       261 ~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~  334 (340)
T 4aow_A          261 ALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQ  334 (340)
T ss_dssp             EEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEe
Confidence            999999876 667778999999999987655          2346889999999999999999999999999997

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=1.7e-36  Score=327.81  Aligned_cols=278  Identities=18%  Similarity=0.253  Sum_probs=249.5

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE---EEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK---STL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i---~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ..+|.+.|++++|+|++++|++++ ||.|++||+.+++..   ..+  ..|...|.+++|+|++++|++++.|+.|++||
T Consensus        47 ~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d  125 (337)
T 1gxr_A           47 TLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD  125 (337)
T ss_dssp             EECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE
T ss_pred             eccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE
Confidence            348999999999999999999999 999999999876432   233  37999999999999999999999999999999


Q ss_pred             cCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC
Q 003271          626 TENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       626 l~t~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d  701 (835)
                      +.++.. ....+..|...|.+++|+|+++ ++++++.|+.|++||+++++.+..+.   ..+.+++|+|++..+++++.|
T Consensus       126 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d  204 (337)
T 1gxr_A          126 LAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD  204 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CCCCCcceeeecccCCCceEEEEECCCCC-EEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecC
Confidence            998763 3566788999999999999876 66788899999999999998887775   448899999999999999999


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271          702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~  780 (835)
                      +.|++||+++++.+..+. +...+.+++|+|++.+|++++ |+.|++||+.+.   . ...+..|...|.+++|+|++++
T Consensus       205 g~i~~~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~---~-~~~~~~~~~~v~~~~~~~~~~~  279 (337)
T 1gxr_A          205 NTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---D-KYQLHLHESCVLSLKFAYCGKW  279 (337)
T ss_dssp             SEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS---C-EEEECCCSSCEEEEEECTTSSE
T ss_pred             CcEEEEECCCCceEeeec-CCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---C-eEEEcCCccceeEEEECCCCCE
Confidence            999999999999888776 788999999999999999999 999999999886   2 3467788999999999999999


Q ss_pred             EEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          781 LLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       781 L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |++++.|+.|++||+.+++.+....|...|.+++|+|++++|++++.||.|++||
T Consensus       280 l~~~~~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  334 (337)
T 1gxr_A          280 FVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             EEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             EEEecCCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            9999999999999999999887778999999999999999999999999999996

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=2.9e-36  Score=353.08  Aligned_cols=306  Identities=26%  Similarity=0.437  Sum_probs=270.2

Q ss_pred             ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003271          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (835)
Q Consensus       500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I  579 (835)
                      ..+.....++++++.|+.|++|...                    ...+..+.+|...|.+++|+|++++|++++.|+.|
T Consensus       227 ~~~s~dg~~l~~~~~d~~i~~w~~~--------------------~~~~~~~~~~~~~v~~v~~~~d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          227 VAFSPDGQTIASASDDKTVKLWNRN--------------------GQLLQTLTGHSSSVNGVAFRPDGQTIASASDDKTV  286 (577)
T ss_dssp             EEECTTSSCEEEEETTSCEEEECTT--------------------SCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEECCCCCEEEEEeCCCEEEEEeCC--------------------CCEEEEEecCCCCEEEEEEcCCCCEEEEEeCCCEE
Confidence            3344455788999999999999321                    12456778999999999999999999999999999


Q ss_pred             EEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271          580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sg  659 (835)
                      ++||. +++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+...  .+..+.+|...|.+++|+|++. +++++
T Consensus       287 ~~w~~-~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~--~~~~~~~~~~~v~~~~~s~~g~-~l~~~  362 (577)
T 2ymu_A          287 KLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ--HLQTLTGHSSSVWGVAFSPDGQ-TIASA  362 (577)
T ss_dssp             EEEET-TSCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSC--EEEEECCCSSCEEEEEECTTSS-EEEEE
T ss_pred             EEEeC-CCcEEEEEecCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCC--eeEEEeCCCCCEEEEEECCCCC-EEEEE
Confidence            99996 46778889999999999999999999999999999999998754  3677889999999999999987 66789


Q ss_pred             eCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          660 DNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       660 s~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                      +.|+.|++||.. ++.+..+.   ..+.+++|+|++.+|++++.|+.|++||. +++.+..+.+|...|.+++|+|++++
T Consensus       363 ~~dg~v~~~~~~-~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~  440 (577)
T 2ymu_A          363 SDDKTVKLWNRN-GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQT  440 (577)
T ss_dssp             ETTSEEEEEETT-CCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             eCCCEEEEEcCC-CCEEEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCE
Confidence            999999999964 55555554   45889999999999999999999999996 56778888999999999999999999


Q ss_pred             EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEE
Q 003271          737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAA  815 (835)
Q Consensus       737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~  815 (835)
                      |++++ |+.|++||+..    ..+..+..|...|.+++|+|++++|++++.|+.|+|||........+.+|...|++++|
T Consensus       441 l~~~~~d~~v~~w~~~~----~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~  516 (577)
T 2ymu_A          441 IASASDDKTVKLWNRNG----QLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF  516 (577)
T ss_dssp             EEEEETTSEEEEEETTS----CEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTSCEEEEEECCSSCEEEEEE
T ss_pred             EEEEcCCCEEEEEECCC----CEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEeCCCCCEEEEEE
Confidence            99999 99999999643    57788899999999999999999999999999999999755444588899999999999


Q ss_pred             eCCCCEEEEEECCCcEEEeC
Q 003271          816 STVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       816 spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|++++||+++.||.|+|||
T Consensus       517 s~dg~~l~s~~~dg~v~lwd  536 (577)
T 2ymu_A          517 SPDGQTIASASDDKTVKLWN  536 (577)
T ss_dssp             CTTSSCEEEEETTSEEEEEC
T ss_pred             cCCCCEEEEEECcCEEEEEe
Confidence            99999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9e-37  Score=340.51  Aligned_cols=308  Identities=13%  Similarity=0.173  Sum_probs=264.5

Q ss_pred             c-EEEeccCCCCEEEeec----CCCCCCCcccccccccCCCceeEEEEE----------ecCCCCCEEEEEEeCCCCEEE
Q 003271          507 R-FVDDGSLDDNVESFLS----PDDADPRDRVGRSAEVGKGFTFTEFQL----------IPASTSKVESCHFSPDGKLLA  571 (835)
Q Consensus       507 ~-~l~tGs~D~~i~~~ls----~~~~~~~~~~~~~~~~~~g~~~~~i~~----------l~gH~~~V~sl~fSpdg~~La  571 (835)
                      . ++++|+.|+.|++|..    ......             +.+.....          ..+|.+.|++++|+|++++|+
T Consensus        58 ~~~l~~~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~  124 (425)
T 1r5m_A           58 ESILAYGEKNSVARLARIVETDQEGKKY-------------WKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIV  124 (425)
T ss_dssp             TTEEEEEETBTEEEEEEEEEC------C-------------EEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEE
T ss_pred             CcEEEEecCCceEEEEEEecccCCcccc-------------ccccccccccccccccccccCCCCceEEEEEcCCCCEEE
Confidence            5 9999999999999955    222100             01111222          223788999999999999999


Q ss_pred             EEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCC---------
Q 003271          572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTT---------  642 (835)
Q Consensus       572 sgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~---------  642 (835)
                      +|+.||.|+||| .+++.+..+..|...|.+++|+|++++|++++.|+.|++||+.++.. +..+..+...         
T Consensus       125 ~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~  202 (425)
T 1r5m_A          125 TGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTV-MQHFELKETGGSSINAENH  202 (425)
T ss_dssp             EEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEE-EEEECCC------------
T ss_pred             EEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcE-EEEeeccccCccceeeccc
Confidence            999999999999 67888899999999999999999999999999999999999998764 6666666666         


Q ss_pred             ------eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          643 ------VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       643 ------V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                            |.+++|++++  .+++++.|+.|++||+.+++.+..+.   ..+.+++|+|++..+++++.|+.|++||+++++
T Consensus       203 ~~~~~~~~~~~~~~~~--~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~  280 (425)
T 1r5m_A          203 SGDGSLGVDVEWVDDD--KFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGN  280 (425)
T ss_dssp             ---CCCBSCCEEEETT--EEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBS
T ss_pred             cCCcceeeEEEEcCCC--EEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCc
Confidence                  9999999874  46788899999999999988776664   458999999999999999999999999999999


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271          714 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  792 (835)
Q Consensus       714 ~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I  792 (835)
                      .+..+..|...|.+++|+|++ +|++++ |+.|++||++++   ..+..+..|...|.+++|+|++.+|++++.|+.|++
T Consensus       281 ~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i  356 (425)
T 1r5m_A          281 SQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQN---TLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNV  356 (425)
T ss_dssp             CSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTT---EEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred             cceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCC---cEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEE
Confidence            999999999999999999999 888888 999999999887   788888889999999999999999999999999999


Q ss_pred             EEcCCCc--------------------EE-EeccCCC--CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          793 WNMTENK--------------------TL-TLSAHDK--LVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       793 wDl~~~~--------------------~~-~l~~h~~--~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ||+.+++                    .+ .+..|..  .|++++|+|++++|++++.||.|+|||
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~  422 (425)
T 1r5m_A          357 YDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVA  422 (425)
T ss_dssp             EECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEE
T ss_pred             EECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEe
Confidence            9998877                    55 6778866  999999999999999999999999996

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.1e-38  Score=351.38  Aligned_cols=309  Identities=17%  Similarity=0.227  Sum_probs=264.9

Q ss_pred             cEEEec----------cCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC
Q 003271          507 RFVDDG----------SLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD  576 (835)
Q Consensus       507 ~~l~tG----------s~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D  576 (835)
                      .++++|          +.|+.|++|........                ..+.. ..|...|++++|+|++++|++|+.|
T Consensus        26 ~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~----------------~~~~~-~~~~~~v~~~~~s~~~~~l~~~~~d   88 (416)
T 2pm9_A           26 PLLVSGTVSGTVDANFSTDSSLELWSLLAADSE----------------KPIAS-LQVDSKFNDLDWSHNNKIIAGALDN   88 (416)
T ss_dssp             CEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGC----------------SCSCC-CCCSSCEEEEEECSSSSCEEEEESS
T ss_pred             CEEEEEecCcccccccCCCCeEEEEEccCCCCC----------------cEEEE-EecCCceEEEEECCCCCeEEEEccC
Confidence            488888          88999999954332110                01111 2588899999999999999999999


Q ss_pred             CeEEEEEcCC----CeEEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCC------ce--eEEeecCCCCe
Q 003271          577 KKAVLWCTES----FTVKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPD------YS--LRTFTGHSTTV  643 (835)
Q Consensus       577 g~I~VWd~~t----~~~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~------~~--~~~~~~h~~~V  643 (835)
                      |.|+|||+.+    .+.+..+.+|...|.+++|+|+ +.+|++++.|+.|++||+.+..      ..  ...+..|...|
T Consensus        89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v  168 (416)
T 2pm9_A           89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV  168 (416)
T ss_dssp             SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCC
T ss_pred             CeEEEeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCe
Confidence            9999999987    4688899999999999999998 8999999999999999999875      22  22346799999


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------cCceEEEEecCC-CEEEEEEcCC---cEEEEECC
Q 003271          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------SGATQMRFQPRL-GRILAAAIEN---YISILDVE  710 (835)
Q Consensus       644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------~~i~~l~fsp~~-~~ll~~s~dg---~I~IwDl~  710 (835)
                      .+++|+|++..++++++.|+.|++||+++++.+..+.         ..+.+++|+|++ ..+++++.|+   .|++||++
T Consensus       169 ~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~  248 (416)
T 2pm9_A          169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLR  248 (416)
T ss_dssp             CEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETT
T ss_pred             eEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCC
Confidence            9999999977789999999999999999998887764         348899999997 5888888888   99999999


Q ss_pred             CC-eEEEEEc-CCCCCeEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC-CEEEEEE
Q 003271          711 TQ-VCRLKLQ-GHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF-PSLLVIG  785 (835)
Q Consensus       711 t~-~~i~~l~-~h~~~I~sl~fsp-dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg-~~L~sgs  785 (835)
                      ++ .++..+. +|...|.+++|+| ++.+|++++ |+.|++||++++   .++..+..|...|.+++|+|++ .+|++++
T Consensus       249 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~---~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~  325 (416)
T 2pm9_A          249 NANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESA---EQLSQFPARGNWCFKTKFAPEAPDLFACAS  325 (416)
T ss_dssp             STTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSC---CEEEEEECSSSCCCCEEECTTCTTEEEECC
T ss_pred             CCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCC---ccceeecCCCCceEEEEECCCCCCEEEEEe
Confidence            86 6677777 8999999999999 899999999 999999999987   7888899999999999999999 8999999


Q ss_pred             cCCeEEEEEcCCCcEE-Ee-----------------------------------ccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271          786 CYETLELWNMTENKTL-TL-----------------------------------SAHDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       786 ~dg~I~IwDl~~~~~~-~l-----------------------------------~~h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      .|+.|+|||+.+.... ..                                   ..|...|.+++|+|+|++|++++.||
T Consensus       326 ~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~la~~~~d~  405 (416)
T 2pm9_A          326 FDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKLVQITPDGK  405 (416)
T ss_dssp             SSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEEECBCTTSS
T ss_pred             cCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeEEEEeCCCC
Confidence            9999999999876532 10                                   01667888999999999999999999


Q ss_pred             cEEEeC
Q 003271          830 CVKIWK  835 (835)
Q Consensus       830 ~V~IWd  835 (835)
                      .|+|||
T Consensus       406 ~v~~w~  411 (416)
T 2pm9_A          406 GVSITN  411 (416)
T ss_dssp             CBCCBC
T ss_pred             eEEEEE
Confidence            999997

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=1.5e-36  Score=337.78  Aligned_cols=285  Identities=14%  Similarity=0.155  Sum_probs=253.9

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe------EEEEeccCCCCeEEEEECCC----C---CE
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRFSPS----L---SR  611 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~------~i~~l~~h~~~V~sv~fspd----g---~~  611 (835)
                      ......+.+|.+.|++++|+|  ++|++|+.||.|+|||+.+++      .+..+.+|...|++++|+|+    +   .+
T Consensus         6 ~~~~~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~   83 (397)
T 1sq9_A            6 IATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCL   83 (397)
T ss_dssp             EEEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEE
T ss_pred             hhhhhhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCccccE
Confidence            345677889999999999998  799999999999999999887      77888899999999999999    9   99


Q ss_pred             EEEEECCCeEEEEecCCCCc----eeEEeecC-----CCCeEEEEEc----CCCCcEEEEEeCCCcEEEEECCC------
Q 003271          612 LATSSADRTVRVWDTENPDY----SLRTFTGH-----STTVMSLDFH----PSKEDLLCSCDNNSEIRYWSINN------  672 (835)
Q Consensus       612 Latgs~Dg~I~IWDl~t~~~----~~~~~~~h-----~~~V~sl~fs----p~g~~ll~sgs~Dg~I~iwDl~s------  672 (835)
                      |++++.|+.|++||+.++..    .+..+..|     ...|.+++|+    |++..+|++++.||.|++||+.+      
T Consensus        84 l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  163 (397)
T 1sq9_A           84 VATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESN  163 (397)
T ss_dssp             EEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHH
T ss_pred             EEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccc
Confidence            99999999999999987653    15677778     5899999999    98775377999999999999998      


Q ss_pred             Ceeee-----Ee----------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC---C---CCCeEEEEEc
Q 003271          673 GSCAG-----VF----------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H---KNQVHSVCWN  731 (835)
Q Consensus       673 ~~~~~-----~~----------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h---~~~I~sl~fs  731 (835)
                      ++.+.     .+          ...+.+++|+|++ .+++++.|+.|++||+++++.+..+..   |   ...|.+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~  242 (397)
T 1sq9_A          164 SLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS  242 (397)
T ss_dssp             HTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC
T ss_pred             cceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEEC
Confidence            65554     54          3458999999999 999999999999999999999999998   8   9999999999


Q ss_pred             CCCCEEEEEe-C---CeEEEEEcCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          732 TSGEYLASVS-D---ELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       732 pdg~~Lasgs-D---g~I~IwDl~t~~~~~~i~~l~~-------------~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      |++.+|++++ |   +.|++||++++   ..+..+..             |...|.+++|+|++.+|++++.|+.|+|||
T Consensus       243 ~~~~~l~~~~~d~~~g~i~i~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  319 (397)
T 1sq9_A          243 PQGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD  319 (397)
T ss_dssp             SSTTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred             CCCCEEEEEecCCCCceEEEEECCCC---cccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999999998 8   89999999987   67888887             899999999999999999999999999999


Q ss_pred             cCCCcEE-Eec------cC---------------CCCeeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 003271          795 MTENKTL-TLS------AH---------------DKLVSSLAASTVN----------GMVASASHDKCVKIWK  835 (835)
Q Consensus       795 l~~~~~~-~l~------~h---------------~~~V~~la~spdg----------~~LaSgs~DG~V~IWd  835 (835)
                      +.+++.+ .+.      .|               ...|++++|+|++          ++|++++.||.|+|||
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~  392 (397)
T 1sq9_A          320 VKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  392 (397)
T ss_dssp             TTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             cCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEE
Confidence            9999887 555      67               9999999999998          7999999999999996

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=7.7e-37  Score=337.95  Aligned_cols=242  Identities=17%  Similarity=0.271  Sum_probs=210.5

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE----EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS----TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~----~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      .|...|.+++|++|+ .|++|+.||+|+|||+.+++.+.    .+.+|.+.|++|+|+|++++|++|+.|++|+|||+.+
T Consensus        80 ~~~~~v~~~~~s~d~-~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~  158 (344)
T 4gqb_B           80 QTEAGVADLTWVGER-GILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQ  158 (344)
T ss_dssp             EESSCEEEEEEETTT-EEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             ccCCCEEEEEEeCCC-eEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCC
Confidence            466789999999986 78899999999999999876443    3458999999999999999999999999999999998


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCC-CEEEEEEcCC
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRL-GRILAAAIEN  702 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~-~~ll~~s~dg  702 (835)
                      ++ ++..+.+|...|.+++|++++..+|++|+.|+.|++||++++++...+.     ..+.+++|+|++ ..+++++.|+
T Consensus       159 ~~-~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg  237 (344)
T 4gqb_B          159 QV-VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENG  237 (344)
T ss_dssp             TE-EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTS
T ss_pred             Cc-EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCC
Confidence            76 4888999999999999999998899999999999999999998877654     237789999965 5677889999


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE
Q 003271          703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~  780 (835)
                      .|++||+++++++..+.+|...|++++|+|++ .+|++++ |++|+|||+.++   + +..+.+|...|++++|+|++..
T Consensus       238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~---~-~~~~~~H~~~V~~v~~sp~~~~  313 (344)
T 4gqb_B          238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLS---E-LFRSQAHRDFVRDATWSPLNHS  313 (344)
T ss_dssp             EEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCC---E-EEEECCCSSCEEEEEECSSSTT
T ss_pred             cEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCC---c-EEEEcCCCCCEEEEEEeCCCCe
Confidence            99999999999999999999999999999998 5788888 999999999886   3 4457889999999999999875


Q ss_pred             -EEEEEcCCeEEEEEcCCCcE
Q 003271          781 -LLVIGCYETLELWNMTENKT  800 (835)
Q Consensus       781 -L~sgs~dg~I~IwDl~~~~~  800 (835)
                       |++++.|++|++|++.+...
T Consensus       314 llas~s~D~~v~~w~v~~~~~  334 (344)
T 4gqb_B          314 LLTTVGWDHQVVHHVVPTEPL  334 (344)
T ss_dssp             EEEEEETTSCEEEEECCC---
T ss_pred             EEEEEcCCCeEEEEECCCCCC
Confidence             56889999999999987543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=6.9e-36  Score=323.19  Aligned_cols=273  Identities=19%  Similarity=0.300  Sum_probs=240.1

Q ss_pred             cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (835)
Q Consensus       503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW  582 (835)
                      .+.+.++++|+.|+.|++|.....                   ..+..+.+|...|.+++|++++++|++|+.|++|+||
T Consensus        22 sp~~~~l~s~~~dg~v~lWd~~~~-------------------~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vw   82 (304)
T 2ynn_A           22 HPTEPWVLTTLYSGRVELWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF   82 (304)
T ss_dssp             CSSSSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE
T ss_pred             CCCCCEEEEEcCCCcEEEEECCCC-------------------ceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEE
Confidence            334479999999999999943221                   3466788999999999999999999999999999999


Q ss_pred             EcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271          583 CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       583 d~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      |+.+++.+..+.+|.+.|.+++|+|++.+|++|+.|++|+|||+.++......+.+|...|.+++|+|.+..+|++|+.|
T Consensus        83 d~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D  162 (304)
T 2ynn_A           83 NYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLD  162 (304)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETT
T ss_pred             ECCCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCC
Confidence            99999999999999999999999999999999999999999999987666778899999999999999766788999999


Q ss_pred             CcEEEEECCCCeeeeEee----cCceEEEEec--CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          663 SEIRYWSINNGSCAGVFK----SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       663 g~I~iwDl~s~~~~~~~~----~~i~~l~fsp--~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                      +.|++||+.+......+.    ..+..+.|.|  ++.++++++.|+.|++||+++++++..+.+|...|.+++|+|++.+
T Consensus       163 ~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~  242 (304)
T 2ynn_A          163 RTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI  242 (304)
T ss_dssp             SEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSE
T ss_pred             CeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCE
Confidence            999999998876655543    3467788876  6679999999999999999999999999999999999999999999


Q ss_pred             EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEEcCC
Q 003271          737 LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTE  797 (835)
Q Consensus       737 Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~-L~sgs~dg~I~IwDl~~  797 (835)
                      |++++ |+.|+|||+.+.   +++..+..+...+.+++|+|++.. +++++.++.+.+|++.+
T Consensus       243 l~s~s~Dg~i~iWd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~asg~~~g~~~~~~~~  302 (304)
T 2ynn_A          243 IISGSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN  302 (304)
T ss_dssp             EEEEETTSCEEEEETTTC---CEEEEECCSSSSEEEEEECTTCGGGCEEEEETTEEEEEECC-
T ss_pred             EEEEcCCCeEEEEECCCC---ceeeeccCCCccEEEEEECCCCCceEEEEecCCceEEEEecc
Confidence            99999 999999999987   788889999999999999998853 34555566788888764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=3.1e-36  Score=338.11  Aligned_cols=310  Identities=15%  Similarity=0.220  Sum_probs=258.9

Q ss_pred             cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEE
Q 003271          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAV  580 (835)
Q Consensus       501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~  580 (835)
                      .+.....++++|+.|+.+++|.......                   ...+..| ..+.+..|++++++|++|+.||.|+
T Consensus        63 ~~s~~g~~l~~~~~d~~v~i~d~~~~~~-------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~  122 (420)
T 3vl1_A           63 TFEKVGSHLYKARLDGHDFLFNTIIRDG-------------------SKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIK  122 (420)
T ss_dssp             EEEEEETTEEEEEETTEEEEEECCSEET-------------------TTTSCSC-CEEEEEEECSSSCEEEEEETTSCEE
T ss_pred             eeeecCCeEEEEEcCCcEEEEEecccce-------------------eeEEecC-CceEEEEEecCCCEEEEEECCCCEE
Confidence            3444457889999999999995433211                   1112234 3455567899999999999999999


Q ss_pred             EEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       581 VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                      |||+.+++....+.+|...|++++|+|++++|++++.|+.|++||+.+++. +..+.+|...|.+++|+|++. +|++++
T Consensus       123 iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~l~s~~  200 (420)
T 3vl1_A          123 VLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSN-PRTLIGHRATVTDIAIIDRGR-NVLSAS  200 (420)
T ss_dssp             EECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCC-CEEEECCSSCEEEEEEETTTT-EEEEEE
T ss_pred             EEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcC-ceEEcCCCCcEEEEEEcCCCC-EEEEEc
Confidence            999999999999899999999999999999999999999999999998764 678889999999999999976 667999


Q ss_pred             CCCcEEEEECCCCeeeeEeec---------------------------CceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          661 NNSEIRYWSINNGSCAGVFKS---------------------------GATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       661 ~Dg~I~iwDl~s~~~~~~~~~---------------------------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      .|+.|++||+++++.+..+..                           .+.+++|+|++..+++++.|+.|++||+++++
T Consensus       201 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          201 LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKE  280 (420)
T ss_dssp             TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCC
T ss_pred             CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCc
Confidence            999999999999998877752                           24445567889999999999999999999998


Q ss_pred             EEEEEc-CCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEcCCe
Q 003271          714 CRLKLQ-GHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCYET  789 (835)
Q Consensus       714 ~i~~l~-~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~  789 (835)
                      .+..+. .|...|.+++|+|++. +|++++ ||.|++||++++.  ..+..+.. +...|.++.+ +++.+|++++.|+.
T Consensus       281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~--~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~  357 (420)
T 3vl1_A          281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPE--CPVGEFLINEGTPINNVYF-AAGALFVSSGFDTS  357 (420)
T ss_dssp             EEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEE
T ss_pred             eeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc--CchhhhhccCCCCceEEEe-CCCCEEEEecCCcc
Confidence            777765 4888999999999998 999988 9999999999873  23555655 5666777754 57789999999999


Q ss_pred             EEEEEcCCC----------cEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003271          790 LELWNMTEN----------KTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK  835 (835)
Q Consensus       790 I~IwDl~~~----------~~~~l~~h~~~V~~la~spdg~---~LaSgs~DG~V~IWd  835 (835)
                      |++||+...          ....+..|...|.+++|+|++.   .|++++.+|.+.+|+
T Consensus       358 v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~  416 (420)
T 3vl1_A          358 IKLDIISDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYN  416 (420)
T ss_dssp             EEEEEECCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEE
T ss_pred             EEEEeccCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEe
Confidence            999998763          2335678899999999999999   788888999999995

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7e-36  Score=328.46  Aligned_cols=280  Identities=15%  Similarity=0.191  Sum_probs=246.8

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      +..|.++|++++|+|++++|++|+.|+.|+|||+.+++  .+..+.+|...|.+++|+|++++|++++.|+.|++||+.+
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~   83 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKG   83 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEET
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCC
Confidence            45699999999999999999999999999999999987  8889999999999999999999999999999999999987


Q ss_pred             CCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEe----ecCceEEEEecCCCEEEEEEc
Q 003271          629 PDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVF----KSGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       629 ~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~----~~~i~~l~fsp~~~~ll~~s~  700 (835)
                      +... ...+..|...|.+++|+|++. ++++++.|+.|++||++.+..   ...+    ...+.+++|+|++..+++++.
T Consensus        84 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~  162 (372)
T 1k8k_C           84 RTWKPTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC  162 (372)
T ss_dssp             TEEEEEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred             CeeeeeEEeecCCCceeEEEECCCCC-EEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcC
Confidence            6532 234467899999999999976 677888999999999988762   2222    345899999999999999999


Q ss_pred             CCcEEEEEC------------------CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271          701 ENYISILDV------------------ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       701 dg~I~IwDl------------------~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~  761 (835)
                      |+.|++||+                  ..++.+..+.+|...|.+++|+|++.+|++++ |+.|++||++++   .++..
T Consensus       163 dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~---~~~~~  239 (372)
T 1k8k_C          163 DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVAT  239 (372)
T ss_dssp             TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEE
T ss_pred             CCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCC---ceeEE
Confidence            999999995                  46788889989999999999999999999999 999999999987   78888


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC--CcE---------------------------------------
Q 003271          762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE--NKT---------------------------------------  800 (835)
Q Consensus       762 l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~--~~~---------------------------------------  800 (835)
                      +..|...|.+++|+|++.+|+++ .|+.|++|++.+  ++.                                       
T Consensus       240 ~~~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (372)
T 1k8k_C          240 LASETLPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG  318 (372)
T ss_dssp             EECSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------
T ss_pred             EccCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccc
Confidence            88999999999999999877766 999999999987  431                                       


Q ss_pred             EEe-ccCCCCeeEEEEe-CCC---CEEEEEECCCcEEEeC
Q 003271          801 LTL-SAHDKLVSSLAAS-TVN---GMVASASHDKCVKIWK  835 (835)
Q Consensus       801 ~~l-~~h~~~V~~la~s-pdg---~~LaSgs~DG~V~IWd  835 (835)
                      ..+ .+|...|++++|+ +++   .+|++|+.||.|+|||
T Consensus       319 ~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~  358 (372)
T 1k8k_C          319 AGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  358 (372)
T ss_dssp             CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEE
Confidence            222 4899999999966 666   8999999999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2.3e-35  Score=355.64  Aligned_cols=283  Identities=21%  Similarity=0.360  Sum_probs=243.9

Q ss_pred             EEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCC-----CeEEEEeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271          546 TEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADR  619 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t-----~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg  619 (835)
                      .....+++|.+.|+||+|++++ ++|++|+.|++|+||++.+     +.....+.+|...|.+++|+|++++|++|+.|+
T Consensus       373 ~~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg  452 (694)
T 3dm0_A          373 VLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDG  452 (694)
T ss_dssp             EEEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             chhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCC
Confidence            4456788999999999999864 7999999999999999875     345678899999999999999999999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------ecCceEEEEecCC-
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------KSGATQMRFQPRL-  692 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~~~i~~l~fsp~~-  692 (835)
                      +|+|||+.++. ....+.+|...|.+++|+|++. +|++|+.|++|++||+.........      ...+.+++|+|++ 
T Consensus       453 ~v~vwd~~~~~-~~~~~~~h~~~v~~~~~s~~~~-~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  530 (694)
T 3dm0_A          453 ELRLWDLAAGV-STRRFVGHTKDVLSVAFSLDNR-QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTL  530 (694)
T ss_dssp             EEEEEETTTTE-EEEEEECCSSCEEEEEECTTSS-CEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSS
T ss_pred             cEEEEECCCCc-ceeEEeCCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCC
Confidence            99999999865 4788899999999999999976 5669999999999998765443322      2348899999986 


Q ss_pred             -CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE
Q 003271          693 -GRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH  770 (835)
Q Consensus       693 -~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~  770 (835)
                       ..+++++.|+.|++||+++.++...+.+|...|.+++|+|++++|++++ |+.|+|||++++   .++..+.. ...|.
T Consensus       531 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~---~~~~~~~~-~~~v~  606 (694)
T 3dm0_A          531 QPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEG---KKLYSLEA-NSVIH  606 (694)
T ss_dssp             SCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTT---EEEECCBC-SSCEE
T ss_pred             cceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---ceEEEecC-CCcEE
Confidence             5799999999999999999999999999999999999999999999999 999999999987   66666554 56799


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-eccC-------------------CCCeeEEEEeCCCCEEEEEECCCc
Q 003271          771 SCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LSAH-------------------DKLVSSLAASTVNGMVASASHDKC  830 (835)
Q Consensus       771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l~~h-------------------~~~V~~la~spdg~~LaSgs~DG~  830 (835)
                      +++|+|++.+|+++ .++.|+|||+.++.++. +..+                   ...|++++|+|++++|++|+.||.
T Consensus       607 ~~~~sp~~~~l~~~-~~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~  685 (694)
T 3dm0_A          607 ALCFSPNRYWLCAA-TEHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGV  685 (694)
T ss_dssp             EEEECSSSSEEEEE-ETTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSE
T ss_pred             EEEEcCCCcEEEEE-cCCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCe
Confidence            99999999866655 56679999999988762 2211                   123789999999999999999999


Q ss_pred             EEEeC
Q 003271          831 VKIWK  835 (835)
Q Consensus       831 V~IWd  835 (835)
                      |+|||
T Consensus       686 i~iW~  690 (694)
T 3dm0_A          686 IRVWG  690 (694)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99996

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=7.5e-35  Score=317.46  Aligned_cols=273  Identities=17%  Similarity=0.274  Sum_probs=238.7

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ..++++|+.|+.|++|.....              .......+..+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus        30 ~~~l~s~s~D~~v~~W~~~~~--------------~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~   95 (319)
T 3frx_A           30 PNLLLSASRDKTLISWKLTGD--------------DQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVA   95 (319)
T ss_dssp             TTEEEEEETTSEEEEEEEEEE--------------TTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             ccEEEEecCCccEEEecCCCC--------------CccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence            479999999999999943221              111234577889999999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC-----CcEEEEEe
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-----EDLLCSCD  660 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g-----~~ll~sgs  660 (835)
                      +++.+..+.+|...|.+++|+|++.+|++|+.|++|+|||+..  .++..+.+|...|.++.|.|..     ..++++++
T Consensus        96 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~--~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~  173 (319)
T 3frx_A           96 TGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG--QCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAG  173 (319)
T ss_dssp             TTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS--CEEEEECCCSSCEEEEEECCC------CCEEEEEE
T ss_pred             CCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC--CeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEe
Confidence            9999999999999999999999999999999999999999974  3477888999999999999863     33788999


Q ss_pred             CCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEE
Q 003271          661 NNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL  737 (835)
Q Consensus       661 ~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~L  737 (835)
                      .|+.|++||+++.+....+.   ..+.+++|+|++.+|++++.|+.|++||+.+++++..+.. ...|.+++|+|++.+|
T Consensus       174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~sp~~~~l  252 (319)
T 3frx_A          174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSA-QDEVFSLAFSPNRYWL  252 (319)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-CSCEEEEEECSSSSEE
T ss_pred             CCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-CCcEEEEEEcCCCCEE
Confidence            99999999999988877665   4589999999999999999999999999999999988874 5689999999999999


Q ss_pred             EEEeCCeEEEEEcCCCCCcceEEEee--------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271          738 ASVSDELVRVWSIGSGSKGECIHELS--------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       738 asgsDg~I~IwDl~t~~~~~~i~~l~--------~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~  798 (835)
                      +++.++.+++|++...   ..+..+.        .+...+.+++|+|+|++|++++.|+.|+|||+.++
T Consensus       253 a~~~~~~i~v~~~~~~---~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          253 AAATATGIKVFSLDPQ---YLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             EEEETTEEEEEEETTE---EEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEEC
T ss_pred             EEEcCCCcEEEEeCcC---eeeeccCccccccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEeec
Confidence            9999888999999875   4444443        24567899999999999999999999999998654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.1e-34  Score=310.53  Aligned_cols=278  Identities=15%  Similarity=0.234  Sum_probs=246.8

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      .+.....+.+|.+.|++++| +++.+|++|+.||.|+|||+.+++....+..|...|.+++|+|++.+|++++.|+.|++
T Consensus         7 ~~~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~   85 (313)
T 3odt_A            7 GYQLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMING   85 (313)
T ss_dssp             CCEEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEE
T ss_pred             cHHHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEE
Confidence            44677889999999999999 99999999999999999999999999999999999999999999999999999999999


Q ss_pred             EecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEec-CCCEEEE
Q 003271          624 WDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQP-RLGRILA  697 (835)
Q Consensus       624 WDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp-~~~~ll~  697 (835)
                      |++....  ..+..+.+|...|.+++|.  + .++++++.|+.|++||  .++....+.   ..+.++.|.+ +++.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~-~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~  160 (313)
T 3odt_A           86 VPLFATSGEDPLYTLIGHQGNVCSLSFQ--D-GVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLT  160 (313)
T ss_dssp             EETTCCTTSCC-CEECCCSSCEEEEEEE--T-TEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEE
T ss_pred             EEeeecCCCCcccchhhcccCEEEEEec--C-CEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEE
Confidence            9987653  3467788899999999994  3 3788999999999999  555555554   4588888888 8899999


Q ss_pred             EEcCCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe
Q 003271          698 AAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH  775 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs  775 (835)
                      ++.|+.|++||  .......+.. |...|.+++|+|++. +++++ |+.|++||++++   ..+..+..|...|.+++|+
T Consensus       161 ~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~i~~~~~~  234 (313)
T 3odt_A          161 ASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTG---DVLRTYEGHESFVYCIKLL  234 (313)
T ss_dssp             EETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEEC
T ss_pred             EECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCch---hhhhhhhcCCceEEEEEEe
Confidence            99999999999  4566677776 899999999999999 66666 999999999987   7888888999999999999


Q ss_pred             CCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          776 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       776 pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++. +++++.||.|+|||
T Consensus       235 ~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~  293 (313)
T 3odt_A          235 PNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFS  293 (313)
T ss_dssp             TTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEE
T ss_pred             cCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEe
Confidence            999 5999999999999999999877 6778999999999999998 66799999999996

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=4.7e-35  Score=321.79  Aligned_cols=263  Identities=24%  Similarity=0.373  Sum_probs=235.5

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      .++++|+.|+.|++|.....                   ..+..+..|...|.+++|+|++++|++|+.|+.|++|++.+
T Consensus        68 ~~l~s~s~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~  128 (340)
T 1got_B           68 RLLLSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKT  128 (340)
T ss_dssp             SEEEEEETTTEEEEEETTTC-------------------CEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEETTT
T ss_pred             CEEEEEeCCCcEEEEECCCC-------------------CcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEECcc
Confidence            68999999999999943222                   24566788999999999999999999999999999999986


Q ss_pred             C----eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271          587 F----TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       587 ~----~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      .    .....+.+|.+.|.++.|++++ .|++++.|++|++||+.++. .+..+.+|...|.+++|+|++. ++++|+.|
T Consensus       129 ~~~~~~~~~~~~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~~-~~~~~~~h~~~v~~~~~~~~~~-~l~sg~~d  205 (340)
T 1got_B          129 REGNVRVSRELAGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETGQ-QTTTFTGHTGDVMSLSLAPDTR-LFVSGACD  205 (340)
T ss_dssp             CSBSCEEEEEEECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-EEEEEETT
T ss_pred             CCCcceeEEEecCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCCc-EEEEEcCCCCceEEEEECCCCC-EEEEEeCC
Confidence            5    4667788999999999999876 48999999999999999876 4788889999999999999976 77899999


Q ss_pred             CcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCCCEE
Q 003271          663 SEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYL  737 (835)
Q Consensus       663 g~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~fspdg~~L  737 (835)
                      +.|++||++++.++..+.   ..+.+++|+|++..|++++.|+.|++||++++..+..+..  +...|.+++|+|+|.+|
T Consensus       206 ~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l  285 (340)
T 1got_B          206 ASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL  285 (340)
T ss_dssp             SCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEE
T ss_pred             CcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEE
Confidence            999999999998887776   3489999999999999999999999999999988777653  33579999999999999


Q ss_pred             EEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          738 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      ++++ |+.|++||+.++   ..+..+.+|...|.+++|+|++.+|++++.|+.|+|||
T Consensus       286 ~~g~~d~~i~vwd~~~~---~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd  340 (340)
T 1got_B          286 LAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             EEECCCCeEEEEEcccC---cEeeEeecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence            9999 999999999887   67888999999999999999999999999999999997

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.4e-35  Score=321.80  Aligned_cols=286  Identities=15%  Similarity=0.201  Sum_probs=240.9

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEE-EEEeC---CCeEEEEEcCCCeEEEEe-ccCCCCeEEEEECCC---CCEEEEEECCC
Q 003271          548 FQLIPASTSKVESCHFSPDGKLL-ATGGH---DKKAVLWCTESFTVKSTL-EEHTQWITDVRFSPS---LSRLATSSADR  619 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~L-asgs~---Dg~I~VWd~~t~~~i~~l-~~h~~~V~sv~fspd---g~~Latgs~Dg  619 (835)
                      ...+.+|.+.|++++|+|++..| ++|+.   |+.|+|||+.+++..... .+|...|.+++|+|+   +.+|++++.||
T Consensus        11 ~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg   90 (357)
T 3i2n_A           11 AHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGG   90 (357)
T ss_dssp             EEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTS
T ss_pred             hhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCC
Confidence            34557899999999999999655 55655   899999999998776443 379999999999998   69999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEE------cCCCCcEEEEEeCCCcEEEEECCCCe-eeeEeec-------CceE
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDF------HPSKEDLLCSCDNNSEIRYWSINNGS-CAGVFKS-------GATQ  685 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~f------sp~g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~~~-------~i~~  685 (835)
                      .|++||+.++...+..+.+|...|.+++|      +|++. +|++++.|+.|++||+++++ .+..+..       .+.+
T Consensus        91 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~  169 (357)
T 3i2n_A           91 NLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAP-EIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWT  169 (357)
T ss_dssp             CEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCC-EEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEE
T ss_pred             eEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCcc-EEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEE
Confidence            99999999887567888999999999966      56655 67799999999999999886 5555532       4667


Q ss_pred             EE----EecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC---CCCEEEEEe-CCeEEEEEcCCCCCcc
Q 003271          686 MR----FQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT---SGEYLASVS-DELVRVWSIGSGSKGE  757 (835)
Q Consensus       686 l~----fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp---dg~~Lasgs-Dg~I~IwDl~t~~~~~  757 (835)
                      ++    |++++..+++++.|+.|++||+++++.... ..|...|.+++|+|   ++.+|++++ |+.|++||++++....
T Consensus       170 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~  248 (357)
T 3i2n_A          170 VAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTK  248 (357)
T ss_dssp             EEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTT
T ss_pred             EEEEeccCCCCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCccc
Confidence            77    678999999999999999999999987655 45889999999999   999999999 9999999998764333


Q ss_pred             eEE--EeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCCc--------------------EEEeccCCCCeeEEE
Q 003271          758 CIH--ELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTENK--------------------TLTLSAHDKLVSSLA  814 (835)
Q Consensus       758 ~i~--~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~~--------------------~~~l~~h~~~V~~la  814 (835)
                      .+.  .+..|...|.+++|+|+++ +|++++.|+.|++||+..+.                    ...+..|...|++++
T Consensus       249 ~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~  328 (357)
T 3i2n_A          249 GFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLD  328 (357)
T ss_dssp             EEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEE
T ss_pred             ceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEE
Confidence            222  4458999999999999998 89999999999999997532                    236778999999999


Q ss_pred             EeCCCCEEE-EEECCCcEEEeC
Q 003271          815 ASTVNGMVA-SASHDKCVKIWK  835 (835)
Q Consensus       815 ~spdg~~La-Sgs~DG~V~IWd  835 (835)
                      |+|++++|+ +++.||.|+|||
T Consensus       329 ~s~~~~~l~~s~~~d~~i~iw~  350 (357)
T 3i2n_A          329 WSPDKRGLCVCSSFDQTVRVLI  350 (357)
T ss_dssp             ECSSSTTEEEEEETTSEEEEEE
T ss_pred             EcCCCCeEEEEecCCCcEEEEE
Confidence            999999888 899999999996

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=5.1e-35  Score=325.08  Aligned_cols=284  Identities=16%  Similarity=0.228  Sum_probs=235.8

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCeEEEEec--cCCCCeEEEEECC-CCCEEEEEECCC
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLE--EHTQWITDVRFSP-SLSRLATSSADR  619 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~--~h~~~V~sv~fsp-dg~~Latgs~Dg  619 (835)
                      .+..+..+.+|.+.|++++|+|++ ++|++|+.||.|+|||+.+++....+.  +|...|.+++|+| ++.+|++++.|+
T Consensus        62 ~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~  141 (383)
T 3ei3_B           62 SYKLHRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRG  141 (383)
T ss_dssp             TCEEEEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTT
T ss_pred             ccceEEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCC
Confidence            345677889999999999999999 999999999999999999887776665  6999999999999 789999999999


Q ss_pred             eEEEEecCCCCceeEEeec---CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCC
Q 003271          620 TVRVWDTENPDYSLRTFTG---HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLG  693 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~---h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~  693 (835)
                      .|++||+.+.  .+..+..   |...|.+++|+|++. +|++++.|+.|++||++ ++.+..+.   ..+.+++|+|++.
T Consensus       142 ~i~iwd~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~  217 (383)
T 3ei3_B          142 ATTLRDFSGS--VIQVFAKTDSWDYWYCCVDVSVSRQ-MLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCD  217 (383)
T ss_dssp             EEEEEETTSC--EEEEEECCCCSSCCEEEEEEETTTT-EEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCT
T ss_pred             EEEEEECCCC--ceEEEeccCCCCCCeEEEEECCCCC-EEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCC
Confidence            9999999963  3445544   448899999999976 77799999999999994 56666554   4589999999998


Q ss_pred             -EEEEEEcCCcEEEEECCC----CeEEEEEcCCCCCeEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCCCcceEEEee---
Q 003271          694 -RILAAAIENYISILDVET----QVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGSKGECIHELS---  763 (835)
Q Consensus       694 -~ll~~s~dg~I~IwDl~t----~~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~---  763 (835)
                       .+++++.|+.|++||+++    +.++..+ +|...|.+++|+| ++.+|++++ |+.|++||++++.....+....   
T Consensus       218 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~  296 (383)
T 3ei3_B          218 WLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQ  296 (383)
T ss_dssp             TEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCC
T ss_pred             CEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccc
Confidence             899999999999999997    6677766 5999999999999 999999999 9999999999874332222111   


Q ss_pred             -cCC----------CceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eecc--CCCCeeEEEEeCCCCEEEEEECCC
Q 003271          764 -CTG----------NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSA--HDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       764 -~~~----------~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~--h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                       .+.          ..+..++|+|++.+  +++.|+.|+|||+.+++.+ .+.+  |...+.+++|+|++.+|++|+ ||
T Consensus       297 ~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~  373 (383)
T 3ei3_B          297 FQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GF  373 (383)
T ss_dssp             CTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TT
T ss_pred             cccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CC
Confidence             111          33444666666665  6678999999999999887 5554  567888889999999999997 99


Q ss_pred             cEEEeC
Q 003271          830 CVKIWK  835 (835)
Q Consensus       830 ~V~IWd  835 (835)
                      .|+|||
T Consensus       374 ~i~iw~  379 (383)
T 3ei3_B          374 NILIWN  379 (383)
T ss_dssp             EEEEEE
T ss_pred             cEEEEe
Confidence            999996

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1.3e-35  Score=324.67  Aligned_cols=284  Identities=15%  Similarity=0.286  Sum_probs=244.0

Q ss_pred             EEecCCCCCEEEEEEeCC----CCEEEEEeCCCeEEEEEcCCCeEEEEecc-----CCCCeEEEEECCC----CCEEEEE
Q 003271          549 QLIPASTSKVESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPS----LSRLATS  615 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-----h~~~V~sv~fspd----g~~Latg  615 (835)
                      ....+|.+.|++++|+|+    ...+++++.++.|+|||+.+++.+..+..     |...|++++|+|+    +.+|++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEe
Confidence            344589999999999984    45666777778999999998877666643     5678999999998    6799999


Q ss_pred             ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------ecCceEEEEe
Q 003271          616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------KSGATQMRFQ  689 (835)
Q Consensus       616 s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~~~i~~l~fs  689 (835)
                      +.||.|+|||+.+++. +..+.+|...|.+++|+|++..+|++++.||.|++||+++++.+..+      ...+.+++|+
T Consensus        92 ~~dg~i~v~d~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~  170 (366)
T 3k26_A           92 GSRGIIRIINPITMQC-IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYD  170 (366)
T ss_dssp             ETTCEEEEECTTTCCE-EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEEC
T ss_pred             cCCCEEEEEEchhceE-eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEEC
Confidence            9999999999998764 77888999999999999944558889999999999999999888776      2458999999


Q ss_pred             cCCCEEEEEEcCCcEEEEECCCCeEEEEE----------------------------cCCCCCeEEEEEcCCCCEEEEEe
Q 003271          690 PRLGRILAAAIENYISILDVETQVCRLKL----------------------------QGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       690 p~~~~ll~~s~dg~I~IwDl~t~~~i~~l----------------------------~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      |++..+++++.|+.|++||+++++....+                            ..|...|.+++|+  +.+|++++
T Consensus       171 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~  248 (366)
T 3k26_A          171 LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKS  248 (366)
T ss_dssp             TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEEC
T ss_pred             CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEe
Confidence            99999999999999999999976544333                            3389999999998  77899888


Q ss_pred             -CCeEEEEEcCCCCC-----------cceEEEeecCCCceEEEEEeCC--CCEEEEEEcCCeEEEEEcCCCcE-----EE
Q 003271          742 -DELVRVWSIGSGSK-----------GECIHELSCTGNKFHSCVFHPT--FPSLLVIGCYETLELWNMTENKT-----LT  802 (835)
Q Consensus       742 -Dg~I~IwDl~t~~~-----------~~~i~~l~~~~~~V~sv~fspd--g~~L~sgs~dg~I~IwDl~~~~~-----~~  802 (835)
                       |+.|++||+.+...           ...+..+..|...|.+++|+|+  +.+|++++.|+.|++||+.+++.     ..
T Consensus       249 ~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  328 (366)
T 3k26_A          249 CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTT  328 (366)
T ss_dssp             SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGGCEEEE
T ss_pred             cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCccccceE
Confidence             99999999987632           1347778889999999999999  99999999999999999998752     25


Q ss_pred             eccC--CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          803 LSAH--DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       803 l~~h--~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +..|  ...|++++|+|++++|++++.||.|+|||
T Consensus       329 ~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd  363 (366)
T 3k26_A          329 LTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWD  363 (366)
T ss_dssp             ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEE
Confidence            6666  79999999999999999999999999997

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.5e-34  Score=322.51  Aligned_cols=276  Identities=17%  Similarity=0.263  Sum_probs=244.6

Q ss_pred             cCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEc----CCCe------EEEEecc----------CCCCeEEEEECCCCC
Q 003271          552 PASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT----ESFT------VKSTLEE----------HTQWITDVRFSPSLS  610 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~----~t~~------~i~~l~~----------h~~~V~sv~fspdg~  610 (835)
                      ..|.+.|++++|+|+++ +||+|+.|+.|+||++    .+++      ....+..          |...|++++|+|+++
T Consensus        42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~  121 (425)
T 1r5m_A           42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN  121 (425)
T ss_dssp             EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred             eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence            45678999999999999 9999999999999999    8887      4555544          688999999999999


Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---C-----
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---G-----  682 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~-----  682 (835)
                      +|++++.||.|+|||. ++. .+..+..|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+..   .     
T Consensus       122 ~l~~~~~dg~i~i~~~-~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~  198 (425)
T 1r5m_A          122 SIVTGVENGELRLWNK-TGA-LLNVLNFHRAPIVSVKWNKDGT-HIISMDVENVTILWNVISGTVMQHFELKETGGSSIN  198 (425)
T ss_dssp             EEEEEETTSCEEEEET-TSC-EEEEECCCCSCEEEEEECTTSS-EEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred             EEEEEeCCCeEEEEeC-CCC-eeeeccCCCccEEEEEECCCCC-EEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence            9999999999999993 333 4788889999999999999976 666888999999999999988776652   2     


Q ss_pred             ----------ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC
Q 003271          683 ----------ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG  751 (835)
Q Consensus       683 ----------i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~  751 (835)
                                +.+++|+++ +.+++++.++.|++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++
T Consensus       199 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~  277 (425)
T 1r5m_A          199 AENHSGDGSLGVDVEWVDD-DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGG  277 (425)
T ss_dssp             -------CCCBSCCEEEET-TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSS
T ss_pred             eccccCCcceeeEEEEcCC-CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence                      778889987 6789999999999999999999889999999999999999999999999 9999999998


Q ss_pred             CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271          752 SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKC  830 (835)
Q Consensus       752 t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~  830 (835)
                      ++   ..+..+..|...|.+++|+|++ .|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++++|++++.||.
T Consensus       278 ~~---~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~  353 (425)
T 1r5m_A          278 NG---NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQ  353 (425)
T ss_dssp             SB---SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSC
T ss_pred             CC---ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccEEEEEEcCCCCEEEEEECCCe
Confidence            87   6677788899999999999999 9999999999999999999877 66789999999999999999999999999


Q ss_pred             EEEeC
Q 003271          831 VKIWK  835 (835)
Q Consensus       831 V~IWd  835 (835)
                      |+|||
T Consensus       354 i~i~~  358 (425)
T 1r5m_A          354 VNVYD  358 (425)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99996

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.1e-35  Score=326.19  Aligned_cols=282  Identities=15%  Similarity=0.253  Sum_probs=226.9

Q ss_pred             CceEEEEecCCCCCccccCccccCCCcEEEeccC------CCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCC
Q 003271          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSL------DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAS  554 (835)
Q Consensus       481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~------D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH  554 (835)
                      ....+.|++++               .+|++|+.      |+.+++|.........               .......+|
T Consensus        44 ~V~~v~fSpDG---------------~~las~s~d~~~~wd~~v~~~~~~~~~~~~---------------~~~~~~~~~   93 (357)
T 4g56_B           44 QIGAVRYRRDG---------------ALLLAASSLSSRTWGGSIWVFKDPEGAPNE---------------SLCTAGVQT   93 (357)
T ss_dssp             EEEEEEECSSS---------------CEEEEEECSSSSSCCEEEEEESSCC---CG---------------GGCSEEEEC
T ss_pred             CEEEEEECCCC---------------CEEEEEcCCCCccccCeEEEEECCCCCcce---------------eEecccCCC
Confidence            46677888877               68888887      4556666332221110               111233478


Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE----EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK----STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i----~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~  630 (835)
                      ...|++++|+|++. +++++.||+|+|||+.+++..    ....+|...|++++|+|++++|++|+.|+.|+|||+.++.
T Consensus        94 ~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~  172 (357)
T 4g56_B           94 EAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKA  172 (357)
T ss_dssp             SSCEEEEEEETTTE-EEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCc
Confidence            88999999999985 456778999999999887654    2345799999999999999999999999999999999876


Q ss_pred             ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCC-CEEEEEEcCCcE
Q 003271          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRL-GRILAAAIENYI  704 (835)
Q Consensus       631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~-~~ll~~s~dg~I  704 (835)
                       .+..+.+|...|.+++|++++..++++++.|+.|++||+++++....+.     ..+.+++|+|++ ..+++++.|+.|
T Consensus       173 -~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i  251 (357)
T 4g56_B          173 -VLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNV  251 (357)
T ss_dssp             -EEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred             -EEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeecccce
Confidence             4788899999999999999988888999999999999999988765543     347899999985 567788999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC-CCCEE
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSL  781 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp-dg~~L  781 (835)
                      ++||+++++++..+.+|...|++++|+|++ ++|++++ |++|+|||++++   +++.. .+|...|++++|+| ++.+|
T Consensus       252 ~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~---~~~~~-~~H~~~V~~vafsP~d~~~l  327 (357)
T 4g56_B          252 SLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFS---EVFRD-LSHRDFVTGVAWSPLDHSKF  327 (357)
T ss_dssp             EEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSC---EEEEE-CCCSSCEEEEEECSSSTTEE
T ss_pred             eEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCC---cEeEE-CCCCCCEEEEEEeCCCCCEE
Confidence            999999999999999999999999999987 6788888 999999999887   55544 47899999999998 78999


Q ss_pred             EEEEcCCeEEEEEcCCC
Q 003271          782 LVIGCYETLELWNMTEN  798 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~  798 (835)
                      ++++.|+.|++||+...
T Consensus       328 ~s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          328 TTVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEEETTSCEEEEECC--
T ss_pred             EEEcCCCeEEEEECCCC
Confidence            99999999999998654

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.7e-34  Score=314.04  Aligned_cols=279  Identities=21%  Similarity=0.355  Sum_probs=229.6

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ..++++|+.|+.|++|.....                ..........+|.+.|.+++|+|++++|++|+.|++|+|||+.
T Consensus        28 g~~las~~~D~~i~iw~~~~~----------------~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~   91 (345)
T 3fm0_A           28 GTLLASCGGDRRIRIWGTEGD----------------SWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKN   91 (345)
T ss_dssp             SSCEEEEETTSCEEEEEEETT----------------EEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEEC
T ss_pred             CCEEEEEcCCCeEEEEEcCCC----------------cceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEcc
Confidence            378999999999999943211                1112233447899999999999999999999999999999988


Q ss_pred             CC--eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271          586 SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (835)
Q Consensus       586 t~--~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~  661 (835)
                      +.  +.+..+.+|...|.+++|+|++++|++|+.|++|+|||+.+...  ++..+.+|...|.+++|+|++. +|++++.
T Consensus        92 ~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~-~l~s~s~  170 (345)
T 3fm0_A           92 QDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQE-LLASASY  170 (345)
T ss_dssp             CC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSS-CEEEEET
T ss_pred             CCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCC-EEEEEeC
Confidence            76  46788999999999999999999999999999999999987643  3567788999999999999976 6779999


Q ss_pred             CCcEEEEECCCCeee--eEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC---------------CeEEEEEcC-
Q 003271          662 NSEIRYWSINNGSCA--GVFK---SGATQMRFQPRLGRILAAAIENYISILDVET---------------QVCRLKLQG-  720 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~--~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t---------------~~~i~~l~~-  720 (835)
                      |+.|++||++++...  ..+.   ..+.+++|+|++.+|++++.|+.|++||...               ..++..+.+ 
T Consensus       171 d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (345)
T 3fm0_A          171 DDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF  250 (345)
T ss_dssp             TSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred             CCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence            999999999887533  3443   4589999999999999999999999999632               234555655 


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-c-----eEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEE
Q 003271          721 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-E-----CIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLEL  792 (835)
Q Consensus       721 h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~-~-----~i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~I  792 (835)
                      |...|.+++|++++.+|++++ |+.|++|+....... .     ......+|...|.+++|+|++. +|++++.|+.|++
T Consensus       251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~  330 (345)
T 3fm0_A          251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAF  330 (345)
T ss_dssp             CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEE
T ss_pred             CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEE
Confidence            889999999999999999998 999999998765321 1     1223457899999999999984 8999999999999


Q ss_pred             EEcCCCcEE
Q 003271          793 WNMTENKTL  801 (835)
Q Consensus       793 wDl~~~~~~  801 (835)
                      |++.+++..
T Consensus       331 W~~~~~~~~  339 (345)
T 3fm0_A          331 WKYQRPEGL  339 (345)
T ss_dssp             EEECC----
T ss_pred             EEecCCCCc
Confidence            999887754

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=3.2e-34  Score=317.54  Aligned_cols=265  Identities=22%  Similarity=0.354  Sum_probs=234.8

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      .++++|+.|+.|++|.....                   .....+..|...|.+++|+|+|.+|++|+.|+.|++|++..
T Consensus        77 ~~l~s~s~Dg~v~vWd~~~~-------------------~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~  137 (354)
T 2pbi_B           77 RRIVSSSQDGKVIVWDSFTT-------------------NKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTF  137 (354)
T ss_dssp             SEEEEEETTSEEEEEETTTC-------------------CEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCCC-------------------CcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEec
Confidence            68999999999999943221                   23455678899999999999999999999999999999864


Q ss_pred             C------eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCC-CcEEEEE
Q 003271          587 F------TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSC  659 (835)
Q Consensus       587 ~------~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~sg  659 (835)
                      .      .....+..|...|.+++|+|++..|++++.|++|++||+.+++ .+..+.+|...|.+++|+|+. ..+|++|
T Consensus       138 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~-~~~~~~~h~~~v~~~~~~~~~~g~~l~sg  216 (354)
T 2pbi_B          138 DKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQ-LLQSFHGHGADVLCLDLAPSETGNTFVSG  216 (354)
T ss_dssp             CTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCC-EEEEEECCSSCEEEEEECCCSSCCEEEEE
T ss_pred             cccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCe-EEEEEcCCCCCeEEEEEEeCCCCCEEEEE
Confidence            3      2345667899999999999999999999999999999999876 478889999999999999853 3588899


Q ss_pred             eCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC--CCCeEEEEEcCCC
Q 003271          660 DNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSG  734 (835)
Q Consensus       660 s~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h--~~~I~sl~fspdg  734 (835)
                      +.||.|++||+++++++..+..   .+.+++|+|++..|++++.|+.|++||++....+..+..+  ...+.+++|+|++
T Consensus       217 s~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g  296 (354)
T 2pbi_B          217 GCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSG  296 (354)
T ss_dssp             ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTS
T ss_pred             eCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCC
Confidence            9999999999999998887753   4899999999999999999999999999998887776543  3578999999999


Q ss_pred             CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          735 EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       735 ~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      .+|++++ |+.|+|||+.++   ..+..+.+|...|.+++|+|++.+|++++.|+.|+||+
T Consensus       297 ~~l~~g~~d~~i~vwd~~~~---~~~~~l~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~  354 (354)
T 2pbi_B          297 RLLFAGYNDYTINVWDVLKG---SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA  354 (354)
T ss_dssp             SEEEEEETTSCEEEEETTTC---SEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCcEEEEECCCC---ceEEEEECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence            9999999 999999999887   67888899999999999999999999999999999996

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=6.9e-34  Score=312.69  Aligned_cols=277  Identities=15%  Similarity=0.226  Sum_probs=229.6

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ...++++|+.|++|++|........            +........+.+|...|++++|+|++.+|++|+.|++|+|||+
T Consensus        38 d~~~l~sgs~D~~v~iWd~~~~~~~------------~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~  105 (343)
T 2xzm_R           38 DSPVLISGSRDKTVMIWKLYEEEQN------------GYFGIPHKALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDL  105 (343)
T ss_dssp             CCCEEEEEETTSCEEEEEECSSCCS------------SBSEEEEEEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEET
T ss_pred             CCCEEEEEcCCCEEEEEECCcCCcc------------cccccccchhccCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            4579999999999999955432111            1123456778999999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe---ecCCCCeEEEEEcCCCC--------
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPSKE--------  653 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~---~~h~~~V~sl~fsp~g~--------  653 (835)
                      .+++.+..+.+|...|.+++|+|++++|++++.|++|++||+....  ....   ..|...|.+++|+|++.        
T Consensus       106 ~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~  183 (343)
T 2xzm_R          106 RTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC--KFSSAEKENHSDWVSCVRYSPIMKSANKVQPF  183 (343)
T ss_dssp             TSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE--EEECCTTTSCSSCEEEEEECCCCCSCSCCCSS
T ss_pred             CCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc--eeeeecccCCCceeeeeeeccccccccccCCC
Confidence            9999999999999999999999999999999999999999998432  2222   26889999999999863        


Q ss_pred             -cEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC-CeEEEEEcCCCCCeEEE
Q 003271          654 -DLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSV  728 (835)
Q Consensus       654 -~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl  728 (835)
                       .++++++.|+.|++||. .......+.   ..+.+++|+|++.+|++++.|+.|++||+.. ......+. +...|.++
T Consensus       184 ~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~~~~~~~~~~-~~~~v~~v  261 (343)
T 2xzm_R          184 APYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGKDKKLLIWDILNLTYPQREFD-AGSTINQI  261 (343)
T ss_dssp             CCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTCEEEEEESSCCSSCSEEEE-CSSCEEEE
T ss_pred             CCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcCCCeEEEEECCCCcccceeec-CCCcEEEE
Confidence             47889999999999995 455555544   4589999999999999999999999999954 33334443 55679999


Q ss_pred             EEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-----------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          729 CWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-----------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       729 ~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-----------~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      +|+|++.+|+++.|+.|++||+.+.... .+..+.           +|...|.+++|+|++++|++|+.||.|++|++.+
T Consensus       262 ~~sp~~~~la~~~d~~v~iw~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          262 AFNPKLQWVAVGTDQGVKIFNLMTQSKA-PVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             EECSSSCEEEEEESSCEEEEESSSCCSC-SEEECCCCSGGGBTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred             EECCCCCEEEEECCCCEEEEEeCCCCCC-ceEEeecCcchhhhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence            9999999998888999999999876432 222332           5778899999999999999999999999999865


Q ss_pred             C
Q 003271          798 N  798 (835)
Q Consensus       798 ~  798 (835)
                      +
T Consensus       341 g  341 (343)
T 2xzm_R          341 S  341 (343)
T ss_dssp             E
T ss_pred             c
Confidence            4

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2e-33  Score=303.52  Aligned_cols=268  Identities=24%  Similarity=0.417  Sum_probs=237.7

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ...++++|+.|+.|++|...+.                   .....+.+|...|.+++|+|++++|++|+.|+.|+|||+
T Consensus        34 ~~~~l~s~~~dg~i~iw~~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~   94 (312)
T 4ery_A           34 NGEWLASSSADKLIKIWGAYDG-------------------KFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDV   94 (312)
T ss_dssp             TSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CCCEEEEeeCCCeEEEEeCCCc-------------------ccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEEC
Confidence            3478999999999999943222                   234567899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      .+++.+..+.+|...|.+++|+|++.+|++++.|+.|++||+.+++ .+..+..|...|.+++|+|++. ++++++.|+.
T Consensus        95 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~  172 (312)
T 4ery_A           95 SSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGK-CLKTLPAHSDPVSAVHFNRDGS-LIVSSSYDGL  172 (312)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCC-EEEEECCCSSCEEEEEECTTSS-EEEEEETTSC
T ss_pred             CCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCE-EEEEecCCCCcEEEEEEcCCCC-EEEEEeCCCc
Confidence            9999999999999999999999999999999999999999999876 4778889999999999999976 6779999999


Q ss_pred             EEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEE---EEEcCCCCEE
Q 003271          665 IRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHS---VCWNTSGEYL  737 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~s---l~fspdg~~L  737 (835)
                      |++||+++++.+..+.    ..+..++|+|++.++++++.|+.|++||+++++++..+.+|...+.+   ....+++.+|
T Consensus       173 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  252 (312)
T 4ery_A          173 CRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSVTGGKWI  252 (312)
T ss_dssp             EEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEECSSSCEE
T ss_pred             EEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEeCCCcEE
Confidence            9999999998877653    34788999999999999999999999999999999999888765433   2334678899


Q ss_pred             EEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE--cCCeEEEEEcC
Q 003271          738 ASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG--CYETLELWNMT  796 (835)
Q Consensus       738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs--~dg~I~IwDl~  796 (835)
                      ++++ |+.|++||+.++   ..+..+.+|...|.+++|+|++..|++++  .|+.|++|+.+
T Consensus       253 ~sg~~dg~i~vwd~~~~---~~~~~~~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~d  311 (312)
T 4ery_A          253 VSGSEDNLVYIWNLQTK---EIVQKLQGHTDVVISTACHPTENIIASAALENDKTIKLWKSD  311 (312)
T ss_dssp             EECCTTSCEEEEETTTC---CEEEEECCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEECC
T ss_pred             EEECCCCEEEEEECCCc---hhhhhhhccCCcEEEEeecCcCCceEEEEccCCccEEEecCC
Confidence            9998 999999999887   78889999999999999999999999987  58999999864

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=7.9e-36  Score=330.21  Aligned_cols=283  Identities=15%  Similarity=0.191  Sum_probs=228.2

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC--eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF--TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~--~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      .+..|.++|++++|+|++++||+|+.|+.|+|||+.++  +.+..+.+|...|.+++|+|++++|++++.|++|+|||+.
T Consensus         6 ~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~   85 (377)
T 3dwl_C            6 VLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKR   85 (377)
T ss_dssp             EEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC---
T ss_pred             eEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Confidence            34457789999999999999999999999999999988  7788899999999999999999999999999999999999


Q ss_pred             CCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee---eeEee----cCceEEEEecCCCEEEEE
Q 003271          628 NPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---AGVFK----SGATQMRFQPRLGRILAA  698 (835)
Q Consensus       628 t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~---~~~~~----~~i~~l~fsp~~~~ll~~  698 (835)
                      ++.  .....+..|...|.+++|+|+++ +|++++.|+.|++||+++++.   ...+.    ..+.+++|+|++.+++++
T Consensus        86 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~  164 (377)
T 3dwl_C           86 PDGTWKQTLVLLRLNRAATFVRWSPNED-KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAG  164 (377)
T ss_dssp             ---CCCCEEECCCCSSCEEEEECCTTSS-CCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEE
T ss_pred             CCCceeeeeEecccCCceEEEEECCCCC-EEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEE
Confidence            865  23567778999999999999976 666888999999999998763   44443    458999999999999999


Q ss_pred             EcCCcEEEEECC------------------CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc-ce
Q 003271          699 AIENYISILDVE------------------TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG-EC  758 (835)
Q Consensus       699 s~dg~I~IwDl~------------------t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~-~~  758 (835)
                      +.|+.|++||++                  .++++..+ +|...|.+++|+|++++|++++ |+.|++||+.++... ..
T Consensus       165 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~~~~~  243 (377)
T 3dwl_C          165 CADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQPPRA  243 (377)
T ss_dssp             ESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEETTTEEC-CEECSTTSCEEE
T ss_pred             eCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCCCCccee
Confidence            999999999985                  35566667 8999999999999999999999 999999999987421 12


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc---------------------------------------
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK---------------------------------------  799 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~---------------------------------------  799 (835)
                      +..+..|...|.+++|+|++.+|++++.++.+ +|+.....                                       
T Consensus       244 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (377)
T 3dwl_C          244 LITVKLSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRS  322 (377)
T ss_dssp             CCCEECSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC-----------
T ss_pred             eEeecCCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccccccccccccccccccccccccccc
Confidence            67788899999999999999988877655555 77664211                                       


Q ss_pred             EE--------------EeccCCCCeeEEEEeCCC-C---EEEEEECCCcEEEeC
Q 003271          800 TL--------------TLSAHDKLVSSLAASTVN-G---MVASASHDKCVKIWK  835 (835)
Q Consensus       800 ~~--------------~l~~h~~~V~~la~spdg-~---~LaSgs~DG~V~IWd  835 (835)
                      ..              ....|...|+++++.+.. .   .|+||+.||.|+|||
T Consensus       323 ~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWd  376 (377)
T 3dwl_C          323 TFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWT  376 (377)
T ss_dssp             --------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEEC
T ss_pred             cccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEec
Confidence            00              011399999999976643 3   699999999999997

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5.6e-33  Score=316.77  Aligned_cols=297  Identities=17%  Similarity=0.261  Sum_probs=256.6

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      .++++|+.|+.|++|.....                   ..+..+.+|.+.|++++|++++ +|++|+.||+|++||+.+
T Consensus       133 ~~l~sgs~dg~i~vwd~~~~-------------------~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~  192 (464)
T 3v7d_B          133 NYVITGADDKMIRVYDSINK-------------------KFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKK  192 (464)
T ss_dssp             TEEEEEETTSCEEEEETTTT-------------------EEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTT
T ss_pred             CEEEEEcCCCcEEEEECCCC-------------------cEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCC
Confidence            58999999999999943222                   3567788999999999999988 999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEEC--CCCCEEEEEECCCeEEEEecCCCCce----------------------eEEeecCCCC
Q 003271          587 FTVKSTLEEHTQWITDVRFS--PSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHSTT  642 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fs--pdg~~Latgs~Dg~I~IWDl~t~~~~----------------------~~~~~~h~~~  642 (835)
                      ++.+..+.+|...|.+++|+  +++.+|++++.|+.|++||+.+....                      +..+.+|...
T Consensus       193 ~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (464)
T 3v7d_B          193 GCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS  272 (464)
T ss_dssp             TEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSC
T ss_pred             CcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccCccce
Confidence            99999999999999999998  57889999999999999999876532                      4567789999


Q ss_pred             eEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc
Q 003271          643 VMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ  719 (835)
Q Consensus       643 V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~  719 (835)
                      |.++..+  +. ++++++.|+.|++||+.+++++..+.   ..+.+++|+|++..+++++.|+.|++||+++++++..+.
T Consensus       273 v~~~~~~--~~-~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~  349 (464)
T 3v7d_B          273 VRTVSGH--GN-IVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQ  349 (464)
T ss_dssp             EEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC
T ss_pred             EEEEcCC--CC-EEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe
Confidence            9988544  33 77899999999999999999988776   348899999999999999999999999999999999999


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271          720 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       720 ~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~  798 (835)
                      +|...|.+++|+  +.+|++++ |+.|++||+.+.   ...... .+...+..++|++++.+|++++ |+.|++||+.++
T Consensus       350 ~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g  422 (464)
T 3v7d_B          350 GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDY---SRKFSY-HHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG  422 (464)
T ss_dssp             CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---CEEEEE-ECTTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred             CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCC---ceeeee-cCCCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence            999999999997  57888888 999999999986   333333 3567788889999999888888 899999999999


Q ss_pred             cEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          799 KTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       799 ~~~~--l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      +.+.  ...|...|.+++|+ ...++++++.||.+.+|
T Consensus       423 ~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~  459 (464)
T 3v7d_B          423 KLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLE  459 (464)
T ss_dssp             CEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred             cEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEE
Confidence            9884  57889999999998 44566667778766655

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.8e-33  Score=317.27  Aligned_cols=294  Identities=20%  Similarity=0.365  Sum_probs=259.5

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      +.++++|+.|+.|++|.....                   ..+..+.+|.+.|++++|+  +.+|++|+.||.|++||+.
T Consensus       129 g~~l~sg~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~  187 (445)
T 2ovr_B          129 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAE  187 (445)
T ss_dssp             TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETT
T ss_pred             CCEEEEEECCCcEEEEECCCC-------------------cEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECC
Confidence            368999999999999944322                   3456778999999999998  5699999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      +++.+..+.+|...|.+++|+  +..|++|+.||.|++||+.+++ .+..+.+|...|.+++|  ++. ++++++.||.|
T Consensus       188 ~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~~-~~~~~~~~~~~v~~~~~--~~~-~l~~~~~dg~i  261 (445)
T 2ovr_B          188 TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETGQ-CLHVLMGHVAAVRCVQY--DGR-RVVSGAYDFMV  261 (445)
T ss_dssp             TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSCC-EEEEEECCSSCEEEEEE--CSS-CEEEEETTSCE
T ss_pred             cCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCCc-EEEEEcCCcccEEEEEE--CCC-EEEEEcCCCEE
Confidence            999999999999999999995  5689999999999999999876 47788899999999999  333 67789999999


Q ss_pred             EEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          666 RYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                      ++||+++++++..+..   .+.++.|  ++..+++++.|+.|++||+++++++..+.+|...+.++.++  +.+|++++ 
T Consensus       262 ~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~  337 (445)
T 2ovr_B          262 KVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNA  337 (445)
T ss_dssp             EEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEET
T ss_pred             EEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEEe--CCEEEEEeC
Confidence            9999999998888763   3677777  78899999999999999999999999999999999988874  66888888 


Q ss_pred             CCeEEEEEcCCCCCcceEEEeec---CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-e-----ccCCCCeeE
Q 003271          742 DELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-L-----SAHDKLVSS  812 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~l~~---~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l-----~~h~~~V~~  812 (835)
                      |+.|++||++++   .++..+..   |...|.+++|+  +.+|++++.||.|++||+.+++.+. +     ..|.+.|++
T Consensus       338 dg~i~vwd~~~~---~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~  412 (445)
T 2ovr_B          338 DSTVKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWR  412 (445)
T ss_dssp             TSCEEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEE
T ss_pred             CCeEEEEECCCC---cEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEE
Confidence            999999999887   67777765   78889999995  5799999999999999999998873 3     378899999


Q ss_pred             EEEeCCCCEEEEEECCCc----EEEeC
Q 003271          813 LAASTVNGMVASASHDKC----VKIWK  835 (835)
Q Consensus       813 la~spdg~~LaSgs~DG~----V~IWd  835 (835)
                      ++|+|++.+|++|+.||+    |.|||
T Consensus       413 ~~~s~~~~~la~~~~dg~~~~~l~v~d  439 (445)
T 2ovr_B          413 IRASNTKLVCAVGSRNGTEETKLLVLD  439 (445)
T ss_dssp             EEECSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             EEecCCEEEEEEcccCCCCccEEEEEE
Confidence            999999999999999998    99996

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=9.2e-34  Score=362.64  Aligned_cols=311  Identities=21%  Similarity=0.376  Sum_probs=270.2

Q ss_pred             CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC  583 (835)
Q Consensus       504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd  583 (835)
                      ....++++|+.|+.|++|.....                   ..+..+.+|.+.|++++|+|++++||+|+.|+.|+|||
T Consensus       625 ~~~~~l~s~~~d~~i~vw~~~~~-------------------~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd  685 (1249)
T 3sfz_A          625 QDGQRIASCGADKTLQVFKAETG-------------------EKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWD  685 (1249)
T ss_dssp             TTSSEEEEEETTSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             CCCCEEEEEeCCCeEEEEECCCC-------------------CEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEE
Confidence            34479999999999999944322                   34667789999999999999999999999999999999


Q ss_pred             cCCCeEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271          584 TESFTVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (835)
Q Consensus       584 ~~t~~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~  661 (835)
                      +.+++.+..+.+|...|.+++|+|  ++.++++|+.|+.|++||+.++. ++..+.+|...|.+++|+|++. ++++++.
T Consensus       686 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~-~~~~~~~h~~~v~~~~~sp~~~-~l~s~s~  763 (1249)
T 3sfz_A          686 SATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKE-CRNTMFGHTNSVNHCRFSPDDE-LLASCSA  763 (1249)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSS-EEEEECCCSSCEEEEEECSSTT-EEEEEES
T ss_pred             CCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcc-hhheecCCCCCEEEEEEecCCC-EEEEEEC
Confidence            999999999999999999999999  56689999999999999999876 4788889999999999999976 7779999


Q ss_pred             CCcEEEEECCCCeeeeEe----------------------------------------------------------ecCc
Q 003271          662 NSEIRYWSINNGSCAGVF----------------------------------------------------------KSGA  683 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~~~~----------------------------------------------------------~~~i  683 (835)
                      ||.|++||+.+++....+                                                          ...+
T Consensus       764 dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v  843 (1249)
T 3sfz_A          764 DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTI  843 (1249)
T ss_dssp             SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCC
T ss_pred             CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCce
Confidence            999999999876543322                                                          1236


Q ss_pred             eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc------
Q 003271          684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG------  756 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~------  756 (835)
                      .+++|+|++..+++++.++.|++||+.++..+..+.+|...|.+++|+|++.+|++++ |+.|++||+.+....      
T Consensus       844 ~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~  923 (1249)
T 3sfz_A          844 QYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLK  923 (1249)
T ss_dssp             CEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEE
T ss_pred             EEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeeccc
Confidence            7889999999999999999999999999999999999999999999999999999999 999999997532000      


Q ss_pred             --------------------ceEEE--------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC
Q 003271          757 --------------------ECIHE--------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD  807 (835)
Q Consensus       757 --------------------~~i~~--------l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~  807 (835)
                                          ..+..        ...+...+.+++|+|++.++++++.+|.|++||+.+++.. .+.+|.
T Consensus       924 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~ 1003 (1249)
T 3sfz_A          924 QEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHK 1003 (1249)
T ss_dssp             EEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCS
T ss_pred             ceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCC
Confidence                                00000        1123467899999999999999999999999999998877 677899


Q ss_pred             CCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          808 KLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       808 ~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..|++++|+|++++|++++.||.|++||
T Consensus      1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd 1031 (1249)
T 3sfz_A         1004 KAVRHIQFTADGKTLISSSEDSVIQVWN 1031 (1249)
T ss_dssp             SCCCCEEECSSSSCEEEECSSSBEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEE
Confidence            9999999999999999999999999996

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=348.82  Aligned_cols=189  Identities=13%  Similarity=0.138  Sum_probs=159.9

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ...++++|+.|+.|++|.....                   ... ....|...|.+++|+| |++|++++.|++|+|||+
T Consensus        28 dg~~lAsgs~Dg~I~lw~~~~~-------------------~~~-~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~   86 (902)
T 2oaj_A           28 TQNLLAIATVTGEVHIYGQQQV-------------------EVV-IKLEDRSAIKEMRFVK-GIYLVVINAKDTVYVLSL   86 (902)
T ss_dssp             TTTEEEEEETTSEEEEECSTTC-------------------EEE-EECSSCCCEEEEEEET-TTEEEEEETTCEEEEEET
T ss_pred             CCCEEEEEeCCCEEEEEeCCCc-------------------EEE-EEcCCCCCEEEEEEcC-CCEEEEEECcCeEEEEEC
Confidence            3479999999999999932111                   111 2235788999999999 889999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee----------EEeecCCCCeEEEEEcCCCCc
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----------RTFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~----------~~~~~h~~~V~sl~fsp~g~~  654 (835)
                      .+++.+..+. |...|++++|+|++.+|++|+.||.|++||+.++....          ..+.+|...|.+++|+|++..
T Consensus        87 ~~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~  165 (902)
T 2oaj_A           87 YSQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPRDIG  165 (902)
T ss_dssp             TTCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETTEEE
T ss_pred             CCCcEEEEEc-CCCCEEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccCCCC
Confidence            9999998885 77899999999999999999999999999999765321          234678899999999998666


Q ss_pred             EEEEEeCCCcEEEEECCCCeeeeEee---------------------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          655 LLCSCDNNSEIRYWSINNGSCAGVFK---------------------SGATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       655 ll~sgs~Dg~I~iwDl~s~~~~~~~~---------------------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      ++++|+.|+.| +||+++++++..+.                     ..+.+++|+|++.+|++++.|+.|++||+++++
T Consensus       166 ~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~  244 (902)
T 2oaj_A          166 TVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGH  244 (902)
T ss_dssp             EEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCC
T ss_pred             EEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCc
Confidence            88899999999 99999999887765                     338999999999999999999999999998766


Q ss_pred             EEE
Q 003271          714 CRL  716 (835)
Q Consensus       714 ~i~  716 (835)
                      ++.
T Consensus       245 ~~~  247 (902)
T 2oaj_A          245 MIM  247 (902)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            543

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=2.8e-33  Score=319.28  Aligned_cols=280  Identities=19%  Similarity=0.312  Sum_probs=247.7

Q ss_pred             EEEEEecCCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          546 TEFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       546 ~~i~~l~gH~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      .....+.+|.+.| .|+.+  ++++|++|+.||.|++||+.+++.+..+.+|.+.|++++|++++ +|++|+.||+|++|
T Consensus       112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vw  188 (464)
T 3v7d_B          112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVW  188 (464)
T ss_dssp             CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEE
T ss_pred             cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEE
Confidence            4556788999885 66666  56799999999999999999999999999999999999999987 99999999999999


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCCCeee-----------------------eEee
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNGSCA-----------------------GVFK  680 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iwDl~s~~~~-----------------------~~~~  680 (835)
                      |+.++. .+..+.+|...|.+++|++. +..++++|+.|+.|++||+.++...                       ..+.
T Consensus       189 d~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (464)
T 3v7d_B          189 DIKKGC-CTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  267 (464)
T ss_dssp             ETTTTE-EEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC
T ss_pred             ECCCCc-EEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc
Confidence            999876 47888899999999999952 2458889999999999999877533                       2222


Q ss_pred             cC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce
Q 003271          681 SG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC  758 (835)
Q Consensus       681 ~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~  758 (835)
                      ++ ....++++++..+++++.|+.|++||+++++++..+.+|...|.+++|+|++.+|++++ |+.|++||++++   .+
T Consensus       268 ~~~~~v~~~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~---~~  344 (464)
T 3v7d_B          268 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL  344 (464)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTT---EE
T ss_pred             CccceEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---cE
Confidence            22 33445678899999999999999999999999999999999999999999999999999 999999999987   78


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +..+..|...|.++.|+  +.+|++++.|+.|++||+.++.......|...+..++|++++.+|++|+ ||.|+|||
T Consensus       345 ~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd  418 (464)
T 3v7d_B          345 MYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYN  418 (464)
T ss_dssp             EEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEE
T ss_pred             EEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEE
Confidence            89999999999999997  5789999999999999999988776667888899999999999999998 89999996

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.4e-34  Score=327.42  Aligned_cols=283  Identities=14%  Similarity=0.240  Sum_probs=235.2

Q ss_pred             EEEEEe-cCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCC---Ce---EEEEeccCCCCeEEEEECCCCCEEEEEEC
Q 003271          546 TEFQLI-PASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTES---FT---VKSTLEEHTQWITDVRFSPSLSRLATSSA  617 (835)
Q Consensus       546 ~~i~~l-~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t---~~---~i~~l~~h~~~V~sv~fspdg~~Latgs~  617 (835)
                      ..+..+ .+|.+.|++++|+| ++++||+|+.||+|+|||+.+   +.   ....+ .|...|++++|+|++.+|++++.
T Consensus        53 ~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~  131 (437)
T 3gre_A           53 KLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSK  131 (437)
T ss_dssp             CEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEET
T ss_pred             eEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeC
Confidence            345666 89999999999999 999999999999999999876   33   23333 59999999999999999999999


Q ss_pred             CCeEEEEecC---CCCceeEEeec------------CCCCeEEEE--EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee
Q 003271          618 DRTVRVWDTE---NPDYSLRTFTG------------HSTTVMSLD--FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (835)
Q Consensus       618 Dg~I~IWDl~---t~~~~~~~~~~------------h~~~V~sl~--fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~  680 (835)
                      ||.|+|||+.   ++.. ...+..            +...+.++.  +++++ .++++++.|+.|++||+++++++..+.
T Consensus       132 dg~i~vwd~~~~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~iwd~~~~~~~~~~~  209 (437)
T 3gre_A          132 DGQIIVLKVNHYQQESE-VKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEK-SLLVALTNLSRVIIFDIRTLERLQIIE  209 (437)
T ss_dssp             TSEEEEEEEEEEEETTE-EEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSC-EEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEEeccccCCce-eeccccceeEEEEccCcccccCceEEEEEEcCCC-CEEEEEeCCCeEEEEeCCCCeeeEEEc
Confidence            9999999995   3332 222221            455666666  44665 478899999999999999999888776


Q ss_pred             c-----CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcC----CCCEEEEEe-CCeEEEEE
Q 003271          681 S-----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ-GHKNQVHSVCWNT----SGEYLASVS-DELVRVWS  749 (835)
Q Consensus       681 ~-----~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fsp----dg~~Lasgs-Dg~I~IwD  749 (835)
                      .     .+.+++|+|++..+++++.|+.|++||+++++++..+. .|...|.+++|+|    ++.+|++++ |+.|+|||
T Consensus       210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd  289 (437)
T 3gre_A          210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWN  289 (437)
T ss_dssp             CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEE
T ss_pred             cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEE
Confidence            4     48999999999999999999999999999999999886 7888999996654    677999998 99999999


Q ss_pred             cCCCCCcceEEEeec--------------------------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-E
Q 003271          750 IGSGSKGECIHELSC--------------------------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T  802 (835)
Q Consensus       750 l~t~~~~~~i~~l~~--------------------------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~  802 (835)
                      ++++   .++..+..                          |...|.+++|+ ++.+|++++.|+.|++||+.+++.. .
T Consensus       290 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~  365 (437)
T 3gre_A          290 FVKG---HCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKA  365 (437)
T ss_dssp             TTTT---EEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEE
T ss_pred             cCCC---cEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceE
Confidence            9987   55555543                          44568889999 7789999999999999999887744 2


Q ss_pred             ecc-------------------------------------CCCCeeEEEEeCC--CCEEEEEECCCcEEEeC
Q 003271          803 LSA-------------------------------------HDKLVSSLAASTV--NGMVASASHDKCVKIWK  835 (835)
Q Consensus       803 l~~-------------------------------------h~~~V~~la~spd--g~~LaSgs~DG~V~IWd  835 (835)
                      +.+                                     |...|++++|+++  +.+|++|+.||.|+||+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          366 VISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             EECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             EecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            322                                     8999999999998  77999999999999996

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=7e-34  Score=307.25  Aligned_cols=276  Identities=17%  Similarity=0.247  Sum_probs=242.2

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--  631 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--  631 (835)
                      |.+.|.+++|+|||++++++..++.+.+|+...........+|...|++++|+|++++|++++ ||.|++||+.++..  
T Consensus         8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~   86 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS   86 (337)
T ss_dssp             EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS
T ss_pred             cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccceeccCCCceEEEEEecCCcEEEEcC-CCeEEEEECCCCCcee
Confidence            456799999999999999998888887777665555555558999999999999999999998 99999999987643  


Q ss_pred             eeEEee--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe--eeeEee---cCceEEEEecCCCEEEEEEcCCcE
Q 003271          632 SLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS--CAGVFK---SGATQMRFQPRLGRILAAAIENYI  704 (835)
Q Consensus       632 ~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~--~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I  704 (835)
                      .+..+.  .|...|.+++|+|+++ ++++++.|+.|++||+.+++  ....+.   ..+.+++|+|++..+++++.|+.|
T Consensus        87 ~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v  165 (337)
T 1gxr_A           87 PVSQLDCLNRDNYIRSCKLLPDGC-TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNI  165 (337)
T ss_dssp             CSEEEECSCTTSBEEEEEECTTSS-EEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             eeecccccCCCCcEEEEEEcCCCC-EEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcE
Confidence            223333  7899999999999976 66788899999999999877  344443   348899999999999999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s  783 (835)
                      ++||+++++.+..+..|...|.+++|+|++.+|++++ |+.|++||++++   ..+..+. +...+.+++|+|++.+|++
T Consensus       166 ~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~-~~~~v~~~~~s~~~~~l~~  241 (337)
T 1gxr_A          166 AVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG---RQLQQHD-FTSQIFSLGYCPTGEWLAV  241 (337)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEE-CSSCEEEEEECTTSSEEEE
T ss_pred             EEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCC---ceEeeec-CCCceEEEEECCCCCEEEE
Confidence            9999999999999999999999999999999999999 999999999987   5555553 6788999999999999999


Q ss_pred             EEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          784 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       784 gs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++.++.|++||+.+++...+..|...|.+++|+|++++|++++.||.|++||
T Consensus       242 ~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~  293 (337)
T 1gxr_A          242 GMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWR  293 (337)
T ss_dssp             EETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             EcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence            9999999999999999989999999999999999999999999999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.1e-33  Score=341.14  Aligned_cols=307  Identities=20%  Similarity=0.300  Sum_probs=268.8

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ..++++|+.|+.|++|.....                   ..+..+.+|.+.|++++|+|++++|++|+.||.|+|||+.
T Consensus        25 ~~~la~~~~~g~v~iwd~~~~-------------------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~   85 (814)
T 3mkq_A           25 EPWVLTTLYSGRVEIWNYETQ-------------------VEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYN   85 (814)
T ss_dssp             SSEEEEEETTSEEEEEETTTT-------------------EEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEeCCCEEEEEECCCC-------------------ceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECC
Confidence            378999999999999943221                   3466778999999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      +++.+..+.+|.+.|++++|+|++.+|++++.||.|++||+.++......+.+|...|.+++|+|++..++++++.||.|
T Consensus        86 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v  165 (814)
T 3mkq_A           86 TGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTV  165 (814)
T ss_dssp             TCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             CCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeE
Confidence            99999999999999999999999999999999999999999987666788899999999999999445588899999999


Q ss_pred             EEEECCCCeeeeEee----cCceEEEEec--CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 003271          666 RYWSINNGSCAGVFK----SGATQMRFQP--RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS  739 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~----~~i~~l~fsp--~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las  739 (835)
                      ++||+.++.....+.    ..+..++|+|  ++..+++++.|+.|++||+.+++.+..+.+|...|.+++|+|++.+|++
T Consensus       166 ~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  245 (814)
T 3mkq_A          166 KVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIIS  245 (814)
T ss_dssp             EEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEE
T ss_pred             EEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEE
Confidence            999998887766554    4588999999  8999999999999999999999999999999999999999999999999


Q ss_pred             Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE-EEEEEcCCeEEEEEcCCCc----------EE------
Q 003271          740 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LLVIGCYETLELWNMTENK----------TL------  801 (835)
Q Consensus       740 gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~-L~sgs~dg~I~IwDl~~~~----------~~------  801 (835)
                      ++ ||.|++||+.++   ..+..+..+...+.+++|+|++.. +++++.++.+.+|++....          .+      
T Consensus       246 ~~~dg~v~vwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  322 (814)
T 3mkq_A          246 GSEDGTLKIWNSSTY---KVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEPTLSLDPVGKLVWSGGKN  322 (814)
T ss_dssp             EETTSCEEEEETTTC---SEEEEECCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSCCSCCEEECSSSEEEEECCTT
T ss_pred             EeCCCeEEEEECCCC---cEEEEeecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCCCCceeEECCCCCEEEECccc
Confidence            99 999999999987   788888889999999999999874 3666667788899875432          11      


Q ss_pred             ----------------------------EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          802 ----------------------------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       802 ----------------------------~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                                                  .+..+...+.+++|+|+|++|++++ ||.+.||+
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~  383 (814)
T 3mkq_A          323 AAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYT  383 (814)
T ss_dssp             SCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEE-TTEEEEEE
T ss_pred             ccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECCCCCEEEEec-CCEEEEEE
Confidence                                        1123455688999999999999888 88999985

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.3e-35  Score=341.82  Aligned_cols=313  Identities=9%  Similarity=0.041  Sum_probs=231.7

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC------CCEEEEEeCCCe
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD------GKLLATGGHDKK  578 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd------g~~Lasgs~Dg~  578 (835)
                      ...++++++.|+.|++|......               ........+.+|.+.|++++|+|+      +.+||+++.||+
T Consensus       172 ~~~~laS~s~D~tI~iWd~~~~~---------------~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~Dgt  236 (524)
T 2j04_B          172 HLEMFDKEKHSSCIQIFKMNTST---------------LHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGT  236 (524)
T ss_dssp             ----------CEEEEEEEEETTT---------------CCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSC
T ss_pred             hhhhhccCCCCceEEEEEccCCC---------------CCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCe
Confidence            34567889999999999432221               011223456788999999999997      579999999999


Q ss_pred             EEEEEcCCCeE-----------EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEE-
Q 003271          579 AVLWCTESFTV-----------KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL-  646 (835)
Q Consensus       579 I~VWd~~t~~~-----------i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl-  646 (835)
                      |+|||+.+++.           ...+.+|...|++++|+++ ..|++|+.||+|++||+.++..+...+.+|...|.+| 
T Consensus       237 vrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~  315 (524)
T 2j04_B          237 INFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVS  315 (524)
T ss_dssp             EEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEE
T ss_pred             EEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEE
Confidence            99999976531           2467889999999999986 4899999999999999997765567788999999999 


Q ss_pred             -EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-----CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC
Q 003271          647 -DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG  720 (835)
Q Consensus       647 -~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-----~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~  720 (835)
                       .|++++..+|++|+.|++|++||+++++++..+.+     .+.+++|+|++..+++++.|+.|++||++++.++..+.+
T Consensus       316 ~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g  395 (524)
T 2j04_B          316 TAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS  395 (524)
T ss_dssp             EECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE
T ss_pred             EEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec
Confidence             46777646899999999999999998876554432     367899999999999999999999999999988888889


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          721 HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       721 h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l--~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      |...|.+|+|+|+|.+|++|+ |++|++||+..... ......  ..+...+.+++|+|++..+ ....+-.+..|+...
T Consensus       396 H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~-~~~~~~~~~~~~~~v~~v~~sp~g~~~-~~~~~~~~~~~~~~g  473 (524)
T 2j04_B          396 RETTITAIGVSRLHPMVLAGSADGSLIITNAARRLL-HGIKNSSATQKSLRLWKWDYSIKDDKY-RIDSSYEVYPLTVND  473 (524)
T ss_dssp             CSSCEEEEECCSSCCBCEEEETTTEEECCBSCSSTT-TCC------CCCCEEEECBCCSSSCEE-EECCCCCCCC-----
T ss_pred             CCCceEEEEeCCCCCeEEEEECCCEEEEEechHhhc-cccccCccceeeeEEEEeccCCCCCeE-EccCCceecccccCC
Confidence            999999999999999999999 99999999865311 110000  0112257799999999844 222222333333333


Q ss_pred             CcEEEeccCCCCeeEEEEeCCCC---EEEEEECCCcEEEeC
Q 003271          798 NKTLTLSAHDKLVSSLAASTVNG---MVASASHDKCVKIWK  835 (835)
Q Consensus       798 ~~~~~l~~h~~~V~~la~spdg~---~LaSgs~DG~V~IWd  835 (835)
                      .....+.+|...|.+++|+|++.   +||+|+.||.|+||+
T Consensus       474 ~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~  514 (524)
T 2j04_B          474 VSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEY  514 (524)
T ss_dssp             --------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEE
T ss_pred             cceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEE
Confidence            44457889999999999999964   999999999999995

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=3.4e-33  Score=313.40  Aligned_cols=288  Identities=22%  Similarity=0.354  Sum_probs=231.2

Q ss_pred             cccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccC---CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC
Q 003271          501 QLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVG---KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (835)
Q Consensus       501 ~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~---~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg  577 (835)
                      .+.....++++|+ |+.+++|...++...    ..+....   .............+...|++++|+|||++|++|+.|+
T Consensus        71 ~fspdg~~la~g~-~~~v~i~~~~~g~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~  145 (393)
T 1erj_A           71 KFSNDGEYLATGC-NKTTQVYRVSDGSLV----ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR  145 (393)
T ss_dssp             EECTTSSEEEEEC-BSCEEEEETTTCCEE----EEECC-----------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred             EECCCCCEEEEEc-CCcEEEEEecCCCEE----EEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCC
Confidence            3344457888886 689999965443211    1100000   0000001111223455699999999999999999999


Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~  657 (835)
                      .|+|||+.+++.+..+.+|...|.+++|+|++.+|++++.|++|++||+.++.. ...+. +...|.+++|+|....+|+
T Consensus       146 ~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~~~~-~~~~v~~~~~~~~~~~~l~  223 (393)
T 1erj_A          146 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIA  223 (393)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEE
T ss_pred             eEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCee-EEEEE-cCCCcEEEEEECCCCCEEE
Confidence            999999999999999999999999999999999999999999999999998764 34443 5678999999994455888


Q ss_pred             EEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCC------------eEE
Q 003271          658 SCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAAIENYISILDVETQ------------VCR  715 (835)
Q Consensus       658 sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~------------~~i  715 (835)
                      +|+.|+.|++||+++++.+..+.          ..+.+++|+|++..|++++.|+.|++||+++.            .+.
T Consensus       224 ~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~  303 (393)
T 1erj_A          224 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE  303 (393)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE
T ss_pred             EEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcce
Confidence            99999999999999988776552          34889999999999999999999999999753            456


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC------CCCEEEEEEcCC
Q 003271          716 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP------TFPSLLVIGCYE  788 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp------dg~~L~sgs~dg  788 (835)
                      ..+.+|...|.+++|++++.+|++++ |+.|++||+.++   .++..+.+|...|.+++|++      ++.+|++++.|+
T Consensus       304 ~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~---~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg  380 (393)
T 1erj_A          304 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  380 (393)
T ss_dssp             EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             EEEecccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCC---eEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCC
Confidence            67788999999999999999999999 999999999988   77888999999999999986      678999999999


Q ss_pred             eEEEEEcCCC
Q 003271          789 TLELWNMTEN  798 (835)
Q Consensus       789 ~I~IwDl~~~  798 (835)
                      +|+||++...
T Consensus       381 ~i~iW~~~~~  390 (393)
T 1erj_A          381 KARIWKYKKI  390 (393)
T ss_dssp             EEEEEEEEEC
T ss_pred             cEEECccccc
Confidence            9999997643

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=6.4e-34  Score=311.04  Aligned_cols=288  Identities=17%  Similarity=0.262  Sum_probs=243.9

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCC---CCEEEEEeCCCeEEEEEcCC-CeEE-EEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271          544 TFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAVLWCTES-FTVK-STLEEHTQWITDVRFSPSLSRLATSSAD  618 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpd---g~~Lasgs~Dg~I~VWd~~t-~~~i-~~l~~h~~~V~sv~fspdg~~Latgs~D  618 (835)
                      .+..+..+.+|.+.|+|++|+|+   |++|++|+.||.|+|||+.+ +..+ ..+.+|...|++++|+|++++|++++.|
T Consensus        28 ~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d  107 (368)
T 3mmy_A           28 PMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCD  107 (368)
T ss_dssp             TTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCC
Confidence            44567788999999999999999   69999999999999999987 5554 7888999999999999999999999999


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEE--cCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEE
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDF--HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRIL  696 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~f--sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll  696 (835)
                      |.|++||+.++.  ...+..|...|.+++|  ++++. +|++++.|+.|++||+++++.+..+..+...+++......++
T Consensus       108 g~v~iwd~~~~~--~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 3mmy_A          108 KTAKMWDLSSNQ--AIQIAQHDAPVKTIHWIKAPNYS-CVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAV  184 (368)
T ss_dssp             SEEEEEETTTTE--EEEEEECSSCEEEEEEEECSSCE-EEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEE
T ss_pred             CcEEEEEcCCCC--ceeeccccCceEEEEEEeCCCCC-EEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeE
Confidence            999999999866  3446779999999999  77754 777999999999999999999888887766666666677999


Q ss_pred             EEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCE----EEEEe-CCeEEEEEcCCCCCcceEEEeecCCC--
Q 003271          697 AAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEY----LASVS-DELVRVWSIGSGSKGECIHELSCTGN--  767 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~----Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~--  767 (835)
                      +++.++.+.+||++.........  .+...+.++++.++...    +++++ |+.|++||++.......+..+..|..  
T Consensus       185 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~  264 (368)
T 3mmy_A          185 VATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNG  264 (368)
T ss_dssp             EEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC-
T ss_pred             EEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeeccc
Confidence            99999999999999765443332  24456677777665543    77777 99999999988754355666666665  


Q ss_pred             ----------ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          768 ----------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       768 ----------~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                                .|.+++|+|++.+|++++.|+.|+|||+.+++++ .+..|...|.+++|+|++.+|++++.|+..+.|
T Consensus       265 ~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~  342 (368)
T 3mmy_A          265 TNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGH  342 (368)
T ss_dssp             ---CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCG
T ss_pred             ccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccc
Confidence                      7999999999999999999999999999999887 677899999999999999999999998865443

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=1.2e-32  Score=298.68  Aligned_cols=276  Identities=16%  Similarity=0.253  Sum_probs=240.5

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ..++++|+.|+.|++|......              .........+.+|...|.+++|+|++++|++|+.|+.|++|+..
T Consensus        51 ~~~l~S~s~D~~i~vWd~~~~~--------------~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~  116 (340)
T 4aow_A           51 PDMILSASRDKTIIMWKLTRDE--------------TNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT  116 (340)
T ss_dssp             TTEEEEEETTSCEEEEEECCSS--------------SCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEcCCCeEEEEECCCCC--------------cccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceEEeec
Confidence            4699999999999999544331              12234567789999999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC-cEEEEEeCCCc
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE-DLLCSCDNNSE  664 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~-~ll~sgs~Dg~  664 (835)
                      ..........+...+..+.+++++.+|++++.|+.+++||+...........+|...|.+++|++++. .++++++.|+.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~  196 (340)
T 4aow_A          117 TGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKL  196 (340)
T ss_dssp             TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSC
T ss_pred             ccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCE
Confidence            99999898899999999999999999999999999999999876655566778999999999998754 46789999999


Q ss_pred             EEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271          665 IRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      |++||+++++.+..+.   ..+.+++|+|++.+|++++.|+.|++||+++.+.+..+.. ...|.+++|+|++.+++++.
T Consensus       197 i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~  275 (340)
T 4aow_A          197 VKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG-GDIINALCFSPNRYWLCAAT  275 (340)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC-SSCEEEEEECSSSSEEEEEE
T ss_pred             EEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC-CceEEeeecCCCCceeeccC
Confidence            9999999999888775   4589999999999999999999999999999999988874 56899999999999888878


Q ss_pred             CCeEEEEEcCCCCCcceEEE---------eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          742 DELVRVWSIGSGSKGECIHE---------LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~---------l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      |+.|+|||+++.   ..+..         ...|...|++++|+|++++|++++.|+.|+|||+.+|+
T Consensus       276 d~~i~iwd~~~~---~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          276 GPSIKIWDLEGK---IIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             TTEEEEEETTTT---EEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC--
T ss_pred             CCEEEEEECCCC---eEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcC
Confidence            999999999876   33333         34678899999999999999999999999999998875

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2e-33  Score=307.62  Aligned_cols=271  Identities=23%  Similarity=0.417  Sum_probs=214.6

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEe-cC-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI-PA-STSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l-~g-H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ++++|+.|+.|++|....+                 .+..+..+ .+ |.+.|.+++|+|++++|++|+.|++|+|||+.
T Consensus        26 ~las~~~D~~i~lw~~~~~-----------------~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~   88 (330)
T 2hes_X           26 ILATGSTDRKIKLVSVKYD-----------------DFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKE   88 (330)
T ss_dssp             EEEEEESSSCEEEEECSSS-----------------CCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC-
T ss_pred             EEEEEcCCCEEEEEEecCC-----------------CeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcc
Confidence            8999999999999944321                 11223344 34 99999999999999999999999999999984


Q ss_pred             -------CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC---ceeEEeecCCCCeEEEEEcCCCCcE
Q 003271          586 -------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---YSLRTFTGHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       586 -------t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~sl~fsp~g~~l  655 (835)
                             +.+.+..+.+|...|.+++|+|++++|++|+.|++|+|||+....   .++..+.+|...|.+++|+|++. +
T Consensus        89 ~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~-~  167 (330)
T 2hes_X           89 ESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-L  167 (330)
T ss_dssp             ------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECSSSS-E
T ss_pred             cCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECCCCC-E
Confidence                   346678889999999999999999999999999999999995332   34677889999999999999976 7


Q ss_pred             EEEEeCCCcEEEEECCCC--eeeeEee---cCceEEEEecC--CCEEEEEEcCCcEEEEECCCC--------eEEEEEcC
Q 003271          656 LCSCDNNSEIRYWSINNG--SCAGVFK---SGATQMRFQPR--LGRILAAAIENYISILDVETQ--------VCRLKLQG  720 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~--~~~~~~~---~~i~~l~fsp~--~~~ll~~s~dg~I~IwDl~t~--------~~i~~l~~  720 (835)
                      |++|+.|+.|++||+.++  +++..+.   ..+.+++|+|+  +..+++++.|+.|++||++.+        .+...+.+
T Consensus       168 l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~  247 (330)
T 2hes_X          168 LASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPD  247 (330)
T ss_dssp             EEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCS
T ss_pred             EEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeeccc
Confidence            789999999999999876  5566655   44889999998  668999999999999999754        44555555


Q ss_pred             -CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC-ceEEEEEeC--CCCEEEEEEcCCeEEEEEc
Q 003271          721 -HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHSCVFHP--TFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       721 -h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~-~V~sv~fsp--dg~~L~sgs~dg~I~IwDl  795 (835)
                       |...|.+++|++++ +|++++ |+.|+|||..++...........|.. .|.+++|+|  ++.+|++++.|+.|+|||+
T Consensus       248 ~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~  326 (330)
T 2hes_X          248 VHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSL  326 (330)
T ss_dssp             CCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC
T ss_pred             ccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEe
Confidence             89999999999776 566666 99999999876521112223456776 899999999  6889999999999999998


Q ss_pred             CC
Q 003271          796 TE  797 (835)
Q Consensus       796 ~~  797 (835)
                      .+
T Consensus       327 ~~  328 (330)
T 2hes_X          327 EK  328 (330)
T ss_dssp             --
T ss_pred             cc
Confidence            65

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5e-35  Score=327.11  Aligned_cols=276  Identities=20%  Similarity=0.309  Sum_probs=242.9

Q ss_pred             CEEEEEEeCCCC-EEEEE----------eCCCeEEEEEcCCCe---EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEE
Q 003271          557 KVESCHFSPDGK-LLATG----------GHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR  622 (835)
Q Consensus       557 ~V~sl~fSpdg~-~Lasg----------s~Dg~I~VWd~~t~~---~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~  622 (835)
                      .|.+++|+|+++ +|++|          +.|+.|+|||+.+++   .+..+ .|...|.+++|+|++.+|++++.||.|+
T Consensus        14 ~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           14 RTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASL-QVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             ESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCC-CCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEE-ecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            588999999987 99999          889999999998875   33334 5889999999999999999999999999


Q ss_pred             EEecCC---CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe------eeeE------eecCceEEE
Q 003271          623 VWDTEN---PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------CAGV------FKSGATQMR  687 (835)
Q Consensus       623 IWDl~t---~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~------~~~~------~~~~i~~l~  687 (835)
                      |||+.+   +...+..+.+|...|.+++|+|++..+|++++.|+.|++||+.+++      ....      ....+.+++
T Consensus        93 vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  172 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLA  172 (416)
T ss_dssp             EECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEE
T ss_pred             EeecccccccccchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEE
Confidence            999987   3335788889999999999999966688899999999999999876      3222      235589999


Q ss_pred             EecC-CCEEEEEEcCCcEEEEECCCCeEEEEEcCC------CCCeEEEEEcCCC-CEEEEEe-CC---eEEEEEcCCCCC
Q 003271          688 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSG-EYLASVS-DE---LVRVWSIGSGSK  755 (835)
Q Consensus       688 fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h------~~~I~sl~fspdg-~~Lasgs-Dg---~I~IwDl~t~~~  755 (835)
                      |+|+ +..+++++.|+.|++||+++++.+..+..+      ...|.+++|+|++ .+|++++ |+   .|++||+++.. 
T Consensus       173 ~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~-  251 (416)
T 2pm9_A          173 WNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNAN-  251 (416)
T ss_dssp             ECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTT-
T ss_pred             eCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCC-
Confidence            9999 688999999999999999999999988876      7899999999997 6888888 77   99999998863 


Q ss_pred             cceEEEee-cCCCceEEEEEeC-CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCC-CEEEEEECCCcE
Q 003271          756 GECIHELS-CTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVN-GMVASASHDKCV  831 (835)
Q Consensus       756 ~~~i~~l~-~~~~~V~sv~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg-~~LaSgs~DG~V  831 (835)
                       ..+..+. .|...|.+++|+| ++.+|++++.|+.|++||+.+++.+ .+..|...|.+++|+|++ .+|++++.||.|
T Consensus       252 -~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~d~~i  330 (416)
T 2pm9_A          252 -TPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKI  330 (416)
T ss_dssp             -SCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEEEECCSSSEE
T ss_pred             -CCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEEEEEecCCcE
Confidence             3455666 7899999999999 9999999999999999999999877 677999999999999999 899999999999


Q ss_pred             EEeC
Q 003271          832 KIWK  835 (835)
Q Consensus       832 ~IWd  835 (835)
                      +|||
T Consensus       331 ~iw~  334 (416)
T 2pm9_A          331 EVQT  334 (416)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=3.5e-33  Score=328.22  Aligned_cols=302  Identities=18%  Similarity=0.286  Sum_probs=261.8

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCC-EEEEEEeC--CCCEEEEEeCCCeEEEE
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-VESCHFSP--DGKLLATGGHDKKAVLW  582 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~-V~sl~fSp--dg~~Lasgs~Dg~I~VW  582 (835)
                      .+++++++ ++.+.+|......               ........+.+|.+. |++++|+|  ++++|++|+.||.|+||
T Consensus        30 g~~l~~~~-~~~v~v~~~~~~~---------------~~~~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw   93 (615)
T 1pgu_A           30 TNAIAYPC-GKSAFVRCLDDGD---------------SKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVW   93 (615)
T ss_dssp             TTEEEEEE-TTEEEEEECCSSC---------------CSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEE
T ss_pred             CCEEEEec-CCeEEEEECCCCC---------------CccccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEE
Confidence            36788887 7899999543221               011346678899999 99999999  99999999999999999


Q ss_pred             EcCCC--------eEEEEeccCCCCeEEEEECCCCCEEEEEECC----CeEEEEecCCCCceeEEeecCCCCeEEEEEcC
Q 003271          583 CTESF--------TVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP  650 (835)
Q Consensus       583 d~~t~--------~~i~~l~~h~~~V~sv~fspdg~~Latgs~D----g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp  650 (835)
                      |+.++        +.+..+..|...|.+++|+|++++|++++.|    +.|++||.  +. .+..+.+|...|.+++|+|
T Consensus        94 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~~-~~~~~~~~~~~v~~~~~~~  170 (615)
T 1pgu_A           94 GWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--GN-SLGEVSGHSQRINACHLKQ  170 (615)
T ss_dssp             EEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--CC-EEEECCSCSSCEEEEEECS
T ss_pred             eCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--CC-cceeeecCCccEEEEEECC
Confidence            99754        7778888999999999999999999999988    78999983  33 4788889999999999999


Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEee---c---CceEEEEecC-CCEEEEEEcCCcEEEEECCCCeEEEEE-c---
Q 003271          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFK---S---GATQMRFQPR-LGRILAAAIENYISILDVETQVCRLKL-Q---  719 (835)
Q Consensus       651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~---~i~~l~fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l-~---  719 (835)
                      ++..++++++.|+.|++||+.+++.+..+.   .   .+.+++|+|+ +..+++++.|+.|++||+++++.+..+ .   
T Consensus       171 ~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~  250 (615)
T 1pgu_A          171 SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE  250 (615)
T ss_dssp             SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB
T ss_pred             CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEeccccc
Confidence            988788999999999999999999888775   3   5889999999 999999999999999999999999998 6   


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC----CCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          720 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT----GNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       720 ~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~----~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      .|...|.+++|+ ++.+|++++ |+.|++||++++   ..+..+..+    ...+.++.|. ++.++++++.++.|++||
T Consensus       251 ~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d  325 (615)
T 1pgu_A          251 PVQGGIFALSWL-DSQKFATVGADATIRVWDVTTS---KCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYE  325 (615)
T ss_dssp             CCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTT---EEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEE
T ss_pred             ccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCC---cEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEE
Confidence            899999999999 999999999 999999999987   677777665    3667888886 889999999999999999


Q ss_pred             cCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          795 MTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       795 l~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.+++.+ .+.+|...|.+++| |+   |++++.||.|++||
T Consensus       326 ~~~~~~~~~~~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~  363 (615)
T 1pgu_A          326 LGHDEVLKTISGHNKGITALTV-NP---LISGSYDGRIMEWS  363 (615)
T ss_dssp             TTEEEEEEEECCCSSCEEEEET-TT---TEEEETTSCEEETT
T ss_pred             CCCCcEEEEEeCCCCCEEEEEe-cC---cEEECCCCeEEEEE
Confidence            9987776 67788889999988 77   77788888888875

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=4.3e-33  Score=327.40  Aligned_cols=299  Identities=16%  Similarity=0.213  Sum_probs=252.5

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCC---CEEEEEEeCC-CCEEEEEeCCCeEEEEE
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPD-GKLLATGGHDKKAVLWC  583 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~---~V~sl~fSpd-g~~Lasgs~Dg~I~VWd  583 (835)
                      ++++|+.|+.|++|...                   ....+..+.+|.+   .|++++|+|+ +++|++++.|+.|++||
T Consensus       175 ~l~~~~~d~~v~vwd~~-------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd  235 (615)
T 1pgu_A          175 RSMTVGDDGSVVFYQGP-------------------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFD  235 (615)
T ss_dssp             EEEEEETTTEEEEEETT-------------------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEE
T ss_pred             EEEEEeCCCcEEEEeCC-------------------CcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEE
Confidence            78999999999999421                   2345667889999   9999999999 99999999999999999


Q ss_pred             cCCCeEEEEe-c---cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC----CCCeEEEEEcCCCCcE
Q 003271          584 TESFTVKSTL-E---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH----STTVMSLDFHPSKEDL  655 (835)
Q Consensus       584 ~~t~~~i~~l-~---~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h----~~~V~sl~fsp~g~~l  655 (835)
                      +.+++.+..+ .   .|...|.+++|+ ++.+|++++.|+.|++||+.+++. +..+..+    ...+.++.|. ++ .+
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~-~~  311 (615)
T 1pgu_A          236 GKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDVTTSKC-VQKWTLDKQQLGNQQVGVVAT-GN-GR  311 (615)
T ss_dssp             TTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEE-EEEEECCTTCGGGCEEEEEEE-ET-TE
T ss_pred             CCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcE-EEEEcCCCCcccCceeEEEeC-CC-Ce
Confidence            9999999999 6   899999999999 999999999999999999998664 5666655    4678888886 44 46


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEeecC-----------------------------------------------------
Q 003271          656 LCSCDNNSEIRYWSINNGSCAGVFKSG-----------------------------------------------------  682 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~~~~~~~~~~-----------------------------------------------------  682 (835)
                      +++++.|+.|++||+.+++.+..+..+                                                     
T Consensus       312 l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~l~~~~~dg~i~~w~~~~~~~~~~~~v~~~~~~~~~~l~~~~~  391 (615)
T 1pgu_A          312 IISLSLDGTLNFYELGHDEVLKTISGHNKGITALTVNPLISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW  391 (615)
T ss_dssp             EEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEETTTTEEEETTSCEEETTTTEEECCCCSCEEEEECCSTTCCEEEET
T ss_pred             EEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEecCcEEECCCCeEEEEEchhhcCcccCceEEEEECCCcEEEEEeC
Confidence            778888999999998876554433211                                                     


Q ss_pred             ---------------------------------------------------------ceEEEEecCCCEEEEEEc-CCcE
Q 003271          683 ---------------------------------------------------------ATQMRFQPRLGRILAAAI-ENYI  704 (835)
Q Consensus       683 ---------------------------------------------------------i~~l~fsp~~~~ll~~s~-dg~I  704 (835)
                                                                               +.+++|+  +..+++++. |+.|
T Consensus       392 d~~i~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~d~~i  469 (615)
T 1pgu_A          392 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAVSLS--QNYVAVGLEEGNTI  469 (615)
T ss_dssp             TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSEEEEEETTTSCE
T ss_pred             CCCEEEEEcccCcccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCceEEEEc--CCEEEEeecCCCeE
Confidence                                                                     1122222  456666777 8888


Q ss_pred             EEEECCCCeEE-EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeC-----
Q 003271          705 SILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHP-----  776 (835)
Q Consensus       705 ~IwDl~t~~~i-~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fsp-----  776 (835)
                      ++||+.++... ..+.+|...|.+++|+|++++|++++ |+.|++||+.++   +.+..+.. |...|.+++|+|     
T Consensus       470 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~h~~~v~~~~~sp~~~~~  546 (615)
T 1pgu_A          470 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGA  546 (615)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC---
T ss_pred             EEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCC---cceeEeecCCCCceeEEEEcCccccc
Confidence            88888876655 56677999999999999999999999 999999999987   77777777 999999999999     


Q ss_pred             -----CCCEEEEEEcCCeEEEEEcCCC-cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          777 -----TFPSLLVIGCYETLELWNMTEN-KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       777 -----dg~~L~sgs~dg~I~IwDl~~~-~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                           ++++|++++.|+.|++||+.++ +.+ .+.+|...|++++|+|++. |++++.||.|+|||
T Consensus       547 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~  611 (615)
T 1pgu_A          547 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGADACIKRWN  611 (615)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE-EEEEETTSCEEEEE
T ss_pred             cccccCCCEEEEEcCCCcEEEEECCCCceechhhhcCccceEEEEEcCCCC-eEEecCCceEEEEe
Confidence                 9999999999999999999987 444 6789999999999999999 99999999999996

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.3e-34  Score=321.47  Aligned_cols=270  Identities=19%  Similarity=0.344  Sum_probs=232.3

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      .++++|+.|+.|++|.....                   .....+.+|...|.+++|+|+|++|++|+.|+.|+|||+.+
T Consensus        79 ~~l~s~s~D~~v~iWd~~~~-------------------~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~  139 (380)
T 3iz6_a           79 NWIVSASQDGRLIVWNALTS-------------------QKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLSS  139 (380)
T ss_dssp             SCEEEEETTSEEEEEETTTT-------------------EEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECCC
T ss_pred             CEEEEEeCCCeEEEEECCCC-------------------ccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCC
Confidence            68999999999999943221                   34567789999999999999999999999999999999865


Q ss_pred             Ce-------EEEEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEe-----ecCCCCeEEEEEcCCCC
Q 003271          587 FT-------VKSTLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTF-----TGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       587 ~~-------~i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~-----~~h~~~V~sl~fsp~g~  653 (835)
                      ..       ....+.+|.+.|.++.|+|+ +..|++|+.|++|++||+.++.. +..+     .+|...|.+++|++.+.
T Consensus       140 ~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~-~~~~~~~~~~~h~~~v~~~~~~~~~~  218 (380)
T 3iz6_a          140 QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQR-ISIFGSEFPSGHTADVLSLSINSLNA  218 (380)
T ss_dssp             CSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCE-EEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred             CccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcE-EEEeecccCCCCccCeEEEEeecCCC
Confidence            32       34567899999999999997 55799999999999999998764 4444     67899999999998656


Q ss_pred             cEEEEEeCCCcEEEEECCC-CeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-------
Q 003271          654 DLLCSCDNNSEIRYWSINN-GSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-------  722 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s-~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-------  722 (835)
                      .+|++|+.|+.|++||++. .+.+..+.   ..+.+++|+|++.+|++++.|+.|++||++++..+..+..+.       
T Consensus       219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~  298 (380)
T 3iz6_a          219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNEL  298 (380)
T ss_dssp             CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSS
T ss_pred             CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEeccccccccccc
Confidence            7899999999999999984 45555554   459999999999999999999999999999999888876543       


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l----~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      ..|.+++|+|+|.+|++++ ||.|++||+.++   +.+..+    .+|...|.+++|+|++.+|++++.|+.|+||++..
T Consensus       299 ~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~---~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          299 PIVTSVAFSISGRLLFAGYSNGDCYVWDTLLA---EMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             CSCSEEEECSSSSEEEEECTTSCEEEEETTTC---CEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCS
T ss_pred             CceEEEEECCCCCEEEEEECCCCEEEEECCCC---ceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCC
Confidence            2489999999999999999 999999999887   555555    57899999999999999999999999999999876


Q ss_pred             Cc
Q 003271          798 NK  799 (835)
Q Consensus       798 ~~  799 (835)
                      .+
T Consensus       376 ~~  377 (380)
T 3iz6_a          376 HR  377 (380)
T ss_dssp             SS
T ss_pred             Cc
Confidence            53

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.1e-33  Score=311.61  Aligned_cols=277  Identities=19%  Similarity=0.345  Sum_probs=239.3

Q ss_pred             EEecCCCCCEE--EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          549 QLIPASTSKVE--SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       549 ~~l~gH~~~V~--sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ....+|.+.+.  +++|+  +..+++++.|+.|+|||+.+++....+.. |...|++++|+|++.+|++|+.||.|+|||
T Consensus        85 ~~~~~~~~~~~~~~~~~s--~~~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd  162 (401)
T 4aez_A           85 LDAPGIIDDYYLNLLDWS--NLNVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYD  162 (401)
T ss_dssp             EECTTCCCCTTCBCEEEC--TTSEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             eeCCCCcCCceEEEEeec--CCCEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEE
Confidence            33456766644  45555  45678888999999999999998877765 889999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEee---cCceEEEEecCCCEEEEEEcC
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK---SGATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d  701 (835)
                      +.+++. +..+.+|...|.+++|++   .++++++.||.|++||++. ...+..+.   ..+.+++|+|++..+++++.|
T Consensus       163 ~~~~~~-~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d  238 (401)
T 4aez_A          163 VESQTK-LRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGGND  238 (401)
T ss_dssp             TTTCCE-EEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETT
T ss_pred             CcCCeE-EEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEeCC
Confidence            998764 788889999999999953   4888999999999999984 44455544   458999999999999999999


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCC-CEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSG-EYLASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg-~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                      +.|++||++++..+..+..|...|.+++|+|++ .++++++   |+.|++||+.++   .++..+. +...|.+++|+|+
T Consensus       239 ~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~---~~~~~~~-~~~~v~~~~~s~~  314 (401)
T 4aez_A          239 NVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATG---ARVNTVD-AGSQVTSLIWSPH  314 (401)
T ss_dssp             SCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTC---CEEEEEE-CSSCEEEEEECSS
T ss_pred             CeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCC---CEEEEEe-CCCcEEEEEECCC
Confidence            999999999999999999999999999999976 5666654   899999999987   5666665 5678999999999


Q ss_pred             CCEEEEEE--cCCeEEEEEcCCCcEE---EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          778 FPSLLVIG--CYETLELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       778 g~~L~sgs--~dg~I~IwDl~~~~~~---~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +++|++++  .|+.|+|||+.++...   .+.+|...|.+++|+|++.+|++++.||.|+|||
T Consensus       315 ~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~  377 (401)
T 4aez_A          315 SKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWR  377 (401)
T ss_dssp             SSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEE
T ss_pred             CCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            99999965  7999999999987655   4678999999999999999999999999999996

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.3e-33  Score=319.19  Aligned_cols=276  Identities=18%  Similarity=0.338  Sum_probs=229.7

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-----------EEEEeccCC------------CCeEEEEECCCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHT------------QWITDVRFSPSL  609 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~i~~l~~h~------------~~V~sv~fspdg  609 (835)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++           ....+.+|.            ..|++++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            367899999999999999999999999999998876           578888998            889999999998


Q ss_pred             --CEEEEEECCCeEEEEecCCCCce--------------------------------------e-EEeecCCCCeEEEEE
Q 003271          610 --SRLATSSADRTVRVWDTENPDYS--------------------------------------L-RTFTGHSTTVMSLDF  648 (835)
Q Consensus       610 --~~Latgs~Dg~I~IWDl~t~~~~--------------------------------------~-~~~~~h~~~V~sl~f  648 (835)
                        .+|++++.|++|+|||+.+....                                      . ....+|...|.+++|
T Consensus       106 ~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~  185 (447)
T 3dw8_B          106 NAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISI  185 (447)
T ss_dssp             SSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEE
T ss_pred             CcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEE
Confidence              79999999999999998753321                                      1 123679999999999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCC-CeeeeE----------eecCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeE--
Q 003271          649 HPSKEDLLCSCDNNSEIRYWSINN-GSCAGV----------FKSGATQMRFQPRL-GRILAAAIENYISILDVETQVC--  714 (835)
Q Consensus       649 sp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~----------~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~--  714 (835)
                      +|++. +|++| .|+.|++||+++ +..+..          ....+.+++|+|++ ..+++++.|+.|++||++++..  
T Consensus       186 ~~~~~-~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~  263 (447)
T 3dw8_B          186 NSDYE-TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCD  263 (447)
T ss_dssp             CTTSS-EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSC
T ss_pred             cCCCC-EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccc
Confidence            99976 56677 799999999994 444442          23458999999998 8999999999999999999876  


Q ss_pred             --EEEEcCCCC------------CeEEEEEcCCCCEEEEEeCCeEEEEEcCC-CCCcceEEEeecCCCc-----------
Q 003271          715 --RLKLQGHKN------------QVHSVCWNTSGEYLASVSDELVRVWSIGS-GSKGECIHELSCTGNK-----------  768 (835)
Q Consensus       715 --i~~l~~h~~------------~I~sl~fspdg~~LasgsDg~I~IwDl~t-~~~~~~i~~l~~~~~~-----------  768 (835)
                        +..+..|..            .|.+++|+|++.+|++++++.|+|||+++ +   .++..+..|...           
T Consensus       264 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~~~v~iwd~~~~~---~~~~~~~~~~~~~~~l~~~~~~~  340 (447)
T 3dw8_B          264 RHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDYLSVKVWDLNMEN---RPVETYQVHEYLRSKLCSLYEND  340 (447)
T ss_dssp             TTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEESSEEEEEETTCCS---SCSCCEESCGGGTTTHHHHHHTS
T ss_pred             ceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeCCeEEEEeCCCCc---cccceeecccccccccccccccc
Confidence              678887776            89999999999999999999999999987 4   455555555421           


Q ss_pred             ----eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccC---------------------------------CCCee
Q 003271          769 ----FHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAH---------------------------------DKLVS  811 (835)
Q Consensus       769 ----V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h---------------------------------~~~V~  811 (835)
                          +..++|+|++.+|++++.|+.|+|||+.+++.+.+..|                                 ...|.
T Consensus       341 ~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  420 (447)
T 3dw8_B          341 CIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKIL  420 (447)
T ss_dssp             GGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCC
T ss_pred             ccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCcee
Confidence                33489999999999999999999999999988765443                                 45688


Q ss_pred             EEEEeCCCCEEEEEECCCcEEEe
Q 003271          812 SLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       812 ~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      +++|+|++.+||+++.++ ++||
T Consensus       421 ~~~~~p~~~~la~~~~~~-~~~~  442 (447)
T 3dw8_B          421 HTAWHPKENIIAVATTNN-LYIF  442 (447)
T ss_dssp             EEEECSSSSEEEEECSSC-EEEE
T ss_pred             EEEECCCCCEEEEEecce-eeee
Confidence            999999999999998876 6666

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=100.00  E-value=2.1e-33  Score=302.92  Aligned_cols=282  Identities=18%  Similarity=0.223  Sum_probs=216.9

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC----eEEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEE
Q 003271          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESF----TVKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRV  623 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~----~~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~I  623 (835)
                      .+.+|.+.|++++|+|++++||+|+.||.|+|||+.++    +....+.+|...|++++|+|  ++.+|++++.||.|+|
T Consensus         6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~v   85 (351)
T 3f3f_A            6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKL   85 (351)
T ss_dssp             EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEE
Confidence            46799999999999999999999999999999999876    57788889999999999999  6999999999999999


Q ss_pred             EecCCCC--------ceeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEee-------------
Q 003271          624 WDTENPD--------YSLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFK-------------  680 (835)
Q Consensus       624 WDl~t~~--------~~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-------------  680 (835)
                      ||+.++.        ..+..+..|...|.+++|+|+  +. ++++++.|+.|++||+++++.+..+.             
T Consensus        86 wd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~  164 (351)
T 3f3f_A           86 WEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL-KLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPA  164 (351)
T ss_dssp             EEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCS
T ss_pred             EecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc-EEEEecCCCcEEEecCCChHHhccccccccccccccccC
Confidence            9998764        346778889999999999998  65 67789999999999998876543322             


Q ss_pred             ---cCceEEEEecC---CCEEEEEEcCCcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCC----CEEEEEe-CCeEEE
Q 003271          681 ---SGATQMRFQPR---LGRILAAAIENYISILDVETQVC--RLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRV  747 (835)
Q Consensus       681 ---~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg----~~Lasgs-Dg~I~I  747 (835)
                         ..+.+++|+|+   +..+++++.++.+.+|+...+..  +..+.+|...|.+++|+|++    .+|++++ |+.|++
T Consensus       165 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~i  244 (351)
T 3f3f_A          165 NHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRI  244 (351)
T ss_dssp             SCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEE
T ss_pred             CcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEE
Confidence               34789999997   89999999999998888887765  67788899999999999998    7899998 999999


Q ss_pred             EEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc----CCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEE
Q 003271          748 WSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV  822 (835)
Q Consensus       748 wDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~----dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~L  822 (835)
                      ||++.+.   ...........+....+.+....+..+..    ...+.+|+....+.+ .+.+|...|++++|+|++++|
T Consensus       245 wd~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l  321 (351)
T 3f3f_A          245 FKITEKL---SPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVSWNLTGTIL  321 (351)
T ss_dssp             EEEEECC------------------------------------------CCSEEEEEEEEECTTSSCEEEEEECSSSCCE
T ss_pred             EeCCCCc---CccccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEEEcCCCCEE
Confidence            9998763   22222223333333444444443333333    335556655555555 677899999999999999999


Q ss_pred             EEEECCCcEEEeC
Q 003271          823 ASASHDKCVKIWK  835 (835)
Q Consensus       823 aSgs~DG~V~IWd  835 (835)
                      ++|+.||.|+|||
T Consensus       322 ~s~~~dg~v~iw~  334 (351)
T 3f3f_A          322 SSAGDDGKVRLWK  334 (351)
T ss_dssp             EEEETTSCEEEEE
T ss_pred             EEecCCCcEEEEe
Confidence            9999999999996

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=4.5e-33  Score=300.05  Aligned_cols=249  Identities=19%  Similarity=0.292  Sum_probs=211.2

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC--CeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEE
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVW  624 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t--~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IW  624 (835)
                      ..+.+|.+.|++++|+|+|++||+|+.|++|+|||+.+  .+.+.++.+|.+.|++++|+++  +.+|++|+.|++|+||
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            45789999999999999999999999999999999974  4677899999999999999864  8999999999999999


Q ss_pred             ecCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCee--eeEe---ecCceEEEEecC------
Q 003271          625 DTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSC--AGVF---KSGATQMRFQPR------  691 (835)
Q Consensus       625 Dl~t~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~--~~~~---~~~i~~l~fsp~------  691 (835)
                      |+.++. ..+..+.+|...|.+++|+|+. ..+|++++.|+.|++||++++..  ...+   ...+.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998764 2356678899999999999972 34788999999999999987632  2222   345889999997      


Q ss_pred             -------CCEEEEEEcCCcEEEEECCCCe----EEEEEcCCCCCeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCc
Q 003271          692 -------LGRILAAAIENYISILDVETQV----CRLKLQGHKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKG  756 (835)
Q Consensus       692 -------~~~ll~~s~dg~I~IwDl~t~~----~i~~l~~h~~~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~  756 (835)
                             +..|++++.|+.|++||++++.    ....+.+|...|.+++|+|++   .+|++++ |++|+|||+++....
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   4689999999999999998765    667888999999999999985   8899998 999999999875321


Q ss_pred             ceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          757 ECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       757 ~~i~~l--~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      .....+  ..+...|.+++|+|++++|++++.|+.|+||+...
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            222233  45678899999999999999999999999999763

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=1.9e-33  Score=305.74  Aligned_cols=276  Identities=14%  Similarity=0.141  Sum_probs=238.0

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe---EEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEE
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVR  622 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~---~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~  622 (835)
                      .+....+|.+.|++++|+|++++|++++.|+.|+||++.+++   ....+..|...|.+++|+|+++ +|++++.||.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~   82 (342)
T 1yfq_A            3 IVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEIL   82 (342)
T ss_dssp             EEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEE
T ss_pred             ceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEE
Confidence            345567899999999999999999999999999999998876   3445568999999999999999 999999999999


Q ss_pred             EEec-CCCCceeEEeec--CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC---------CeeeeEe--ecCceEEEE
Q 003271          623 VWDT-ENPDYSLRTFTG--HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN---------GSCAGVF--KSGATQMRF  688 (835)
Q Consensus       623 IWDl-~t~~~~~~~~~~--h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s---------~~~~~~~--~~~i~~l~f  688 (835)
                      +||+ .++.  ...+.+  |...|.+++|+| + .++++++.|+.|++||+++         ++++..+  ...+.+++|
T Consensus        83 ~wd~~~~~~--~~~~~~~~~~~~v~~l~~~~-~-~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  158 (342)
T 1yfq_A           83 KVDLIGSPS--FQALTNNEANLGICRICKYG-D-DKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             EECSSSSSS--EEECBSCCCCSCEEEEEEET-T-TEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             EEEeccCCc--eEeccccCCCCceEEEEeCC-C-CEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence            9999 7764  477788  999999999999 4 4777999999999999987         6555444  355889999


Q ss_pred             ecCCCEEEEEEcCCcEEEEECCC-Ce--EEEEEcCCCCCeEEEEEcC-CCCEEEEEe-CCeEEEEEcCCCC---CcceEE
Q 003271          689 QPRLGRILAAAIENYISILDVET-QV--CRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELVRVWSIGSGS---KGECIH  760 (835)
Q Consensus       689 sp~~~~ll~~s~dg~I~IwDl~t-~~--~i~~l~~h~~~I~sl~fsp-dg~~Lasgs-Dg~I~IwDl~t~~---~~~~i~  760 (835)
                      ++++  +++++.++.|++||+++ +.  .......|...|.+++|+| ++.+|++++ |+.|++|++....   ....+.
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~  236 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF  236 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred             cCCc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccce
Confidence            9876  99999999999999998 43  3445556889999999999 999999999 9999999998751   014555


Q ss_pred             EeecCCC---------ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC-CCCeeEEEEeCCCCEEEEEECCC
Q 003271          761 ELSCTGN---------KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       761 ~l~~~~~---------~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h-~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      .+..|..         .|.+++|+|++++|++++.|+.|++||+.+++.+ .+..| ...|.+++  +++.+|++++.||
T Consensus       237 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg  314 (342)
T 1yfq_A          237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--CSDNILCLATSDD  314 (342)
T ss_dssp             EEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--ECSSEEEEEEECT
T ss_pred             eeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--CCCCeEEEEecCC
Confidence            6666654         9999999999999999999999999999999877 67777 99999999  9999999999999


Q ss_pred             c
Q 003271          830 C  830 (835)
Q Consensus       830 ~  830 (835)
                      .
T Consensus       315 ~  315 (342)
T 1yfq_A          315 T  315 (342)
T ss_dssp             H
T ss_pred             c
Confidence            8

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.9e-34  Score=325.36  Aligned_cols=279  Identities=20%  Similarity=0.283  Sum_probs=223.2

Q ss_pred             EEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEE
Q 003271          549 QLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVW  624 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IW  624 (835)
                      ....+|...|+||+|+| ++.+||+|+.||.|+|||+.+++  ....+.+|.+.|++|+|+| ++.+|++|+.||+|+||
T Consensus       113 ~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iw  192 (435)
T 4e54_B          113 QKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQ  192 (435)
T ss_dssp             CEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEE
T ss_pred             ccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEe
Confidence            34567899999999999 56799999999999999998765  4455678999999999998 68999999999999999


Q ss_pred             ecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---ecCceEEEEecCCC-EEEE
Q 003271          625 DTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---KSGATQMRFQPRLG-RILA  697 (835)
Q Consensus       625 Dl~t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---~~~i~~l~fsp~~~-~ll~  697 (835)
                      |+++..  ...+.   .+...+.+++|+|++. +|++|+.||.|++||++.. .+..+   ...+.+++|+|++. .+++
T Consensus       193 d~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~l~~g~~dg~i~~wd~~~~-~~~~~~~h~~~v~~v~~~p~~~~~~~s  268 (435)
T 4e54_B          193 DFKGNI--LRVFASSDTINIWFCSLDVSASSR-MVVTGDNVGNVILLNMDGK-ELWNLRMHKKKVTHVALNPCCDWFLAT  268 (435)
T ss_dssp             ETTSCE--EEEEECCSSCSCCCCCEEEETTTT-EEEEECSSSBEEEEESSSC-BCCCSBCCSSCEEEEEECTTCSSEEEE
T ss_pred             eccCCc--eeEEeccCCCCccEEEEEECCCCC-EEEEEeCCCcEeeeccCcc-eeEEEecccceEEeeeecCCCceEEEE
Confidence            998653  23332   2344678999999976 7779999999999999754 34333   35589999999986 5778


Q ss_pred             EEcCCcEEEEECCCCeEEE---EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC------
Q 003271          698 AAIENYISILDVETQVCRL---KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN------  767 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~---~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~------  767 (835)
                      ++.|+.|++||+++.+...   ...+|...|++++|+|+|.+|++++ |+.|+|||+.++   .+...+..|..      
T Consensus       269 ~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~---~~~~~~~~~~~~~~~~~  345 (435)
T 4e54_B          269 ASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQW---DCPLGLIPHPHRHFQHL  345 (435)
T ss_dssp             EETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSS---SSEEEECCCCCCCCSSS
T ss_pred             ecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCC---ccceEEecccccccccc
Confidence            8899999999998765433   3356899999999999999999999 999999999987   44444443332      


Q ss_pred             ceEEEEEeCCCCEEEEEEc------------CCeEEEEEcCCCcEE-Ee-ccCCCCeeEE-EEeCCCCEEEEEECCCcEE
Q 003271          768 KFHSCVFHPTFPSLLVIGC------------YETLELWNMTENKTL-TL-SAHDKLVSSL-AASTVNGMVASASHDKCVK  832 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~------------dg~I~IwDl~~~~~~-~l-~~h~~~V~~l-a~spdg~~LaSgs~DG~V~  832 (835)
                      .+..+.|+|++..++++..            ++.|++||..+++++ .+ ..|...|.++ +|+|+|.+|++|+ |+.|+
T Consensus       346 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~  424 (435)
T 4e54_B          346 TPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHIL  424 (435)
T ss_dssp             CCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEE
T ss_pred             eeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEE
Confidence            2345677777777766643            247999999999987 33 4788889887 6999999999876 78999


Q ss_pred             EeC
Q 003271          833 IWK  835 (835)
Q Consensus       833 IWd  835 (835)
                      |||
T Consensus       425 iW~  427 (435)
T 4e54_B          425 IWS  427 (435)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            997

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=2.4e-32  Score=308.91  Aligned_cols=268  Identities=22%  Similarity=0.409  Sum_probs=231.5

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      +.+|+||+++ +||+|. |++|+|||+.+++++..+  .+|...|++|+|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus       108 ~~~l~wS~~n-~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~-~~~~  184 (420)
T 4gga_A          108 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN  184 (420)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEE
T ss_pred             ceeEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCc-EEEE
Confidence            5679999764 787775 899999999999887765  4678899999999999999999999999999999876 4788


Q ss_pred             eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET  711 (835)
Q Consensus       636 ~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t  711 (835)
                      +.+|...|.++++++   .++++|+.|+.+++||...... +..+.   ..+..+.+++++..+++++.|+.|++||..+
T Consensus       185 ~~~h~~~v~~~s~~~---~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~  261 (420)
T 4gga_A          185 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  261 (420)
T ss_dssp             ECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             EeCCCCceEEEeeCC---CEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeeccccceEEeecc
Confidence            999999999999874   4888999999999999986543 34443   4488899999999999999999999999987


Q ss_pred             Ce----EEEEEcCCCCCeEEEEEcCCC-CEEEEE--e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271          712 QV----CRLKLQGHKNQVHSVCWNTSG-EYLASV--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       712 ~~----~i~~l~~h~~~I~sl~fspdg-~~Lasg--s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s  783 (835)
                      ++    .+.....|...|.+++|+|++ .+++++  + |++|++||+.++   .++..+.. ...+.++.|++++..+++
T Consensus       262 ~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~---~~~~~~~~-~~~v~~~~~~~~~~~lv~  337 (420)
T 4gga_A          262 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACLSAVDA-HSQVCSILWSPHYKELIS  337 (420)
T ss_dssp             CSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTT---EEEEEEEC-SSCEEEEEEETTTTEEEE
T ss_pred             ccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCcc---ccceeecc-ccceeeeeecCCCCeEEE
Confidence            64    345677799999999999976 455543  3 899999999988   66666664 467899999999999988


Q ss_pred             EE--cCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          784 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       784 gs--~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++  .|+.|+|||+.+++++ .+.+|.+.|++++|+|||.+||||+.||+|+|||
T Consensus       338 ~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWd  392 (420)
T 4gga_A          338 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  392 (420)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            76  5789999999999887 7889999999999999999999999999999997

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.9e-33  Score=311.49  Aligned_cols=277  Identities=13%  Similarity=0.100  Sum_probs=224.5

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCC-------eEEEEEcCCCe----------EEEEeccCCCCeEEEEECCCCCEEEEEE--
Q 003271          556 SKVESCHFSPDGKLLATGGHDK-------KAVLWCTESFT----------VKSTLEEHTQWITDVRFSPSLSRLATSS--  616 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg-------~I~VWd~~t~~----------~i~~l~~h~~~V~sv~fspdg~~Latgs--  616 (835)
                      -+|+|++|+||+++||+|+.|.       +|+||++....          ....+..|...|.+++++  +..+++|+  
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECC
Confidence            4799999999999999998643       59999987542          123567888999998875  44666654  


Q ss_pred             ---------CCCeEEEEecCCCCceeEEe--------ecCCCCeEEEEEcCCCCcEE-EEEeCCCcEEEEECCCCeeeeE
Q 003271          617 ---------ADRTVRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLL-CSCDNNSEIRYWSINNGSCAGV  678 (835)
Q Consensus       617 ---------~Dg~I~IWDl~t~~~~~~~~--------~~h~~~V~sl~fsp~g~~ll-~sgs~Dg~I~iwDl~s~~~~~~  678 (835)
                               .|+.|++|++......+...        ..+...+.+++|+|||+.++ ++++.|++|++||+++++++..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                     47789999987665433221        23445689999999998764 4566899999999999998877


Q ss_pred             ee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEe-CC----eEEEEE
Q 003271          679 FK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-DE----LVRVWS  749 (835)
Q Consensus       679 ~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~--l~~h~~~I~sl~fspdg~~Lasgs-Dg----~I~IwD  749 (835)
                      +.  ..+.+++|+|++.++++++ ++.+.+|+..++..+..  ...|...|.+++|+|++.++++++ |+    .+++|+
T Consensus       173 ~~~~~~V~~v~fspdg~~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~  251 (365)
T 4h5i_A          173 IETRGEVKDLHFSTDGKVVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKIS  251 (365)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEE
T ss_pred             eCCCCceEEEEEccCCceEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecc
Confidence            75  4489999999999888877 55677777777765543  345888999999999999999988 65    688899


Q ss_pred             cCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-E-eccCCCCeeEEEEeCCCCEEEEEE
Q 003271          750 IGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-T-LSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       750 l~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~-l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                      +..... ......+..|...|++++|+|++++|++|+.|+.|+|||+.+++++ . +.+|...|++|+|+|||++||||+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S  331 (365)
T 4h5i_A          252 IKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVS  331 (365)
T ss_dssp             EETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEE
T ss_pred             cccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEe
Confidence            876532 1234567788999999999999999999999999999999999987 3 468999999999999999999999


Q ss_pred             CCCcEEEeC
Q 003271          827 HDKCVKIWK  835 (835)
Q Consensus       827 ~DG~V~IWd  835 (835)
                      .|++|+|||
T Consensus       332 ~D~tvrvw~  340 (365)
T 4h5i_A          332 AANTIHIIK  340 (365)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCeEEEEE
Confidence            999999996

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=6.2e-33  Score=338.47  Aligned_cols=284  Identities=17%  Similarity=0.307  Sum_probs=253.7

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ...+.+.+|.+.|++++|+|++++||+|+.||.|+|||+.+++.+..+.+|...|.+++|+|++++|++++.||.|+|||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            34567889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEee---cCceEEEEec-CCCEEEEEEc
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFK---SGATQMRFQP-RLGRILAAAI  700 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~---~~i~~l~fsp-~~~~ll~~s~  700 (835)
                      +.+++. +..+.+|...|.+++|+|++. ++++++.||.|++||+.++ .....+.   ..+.+++|+| ++..+++++.
T Consensus        84 ~~~~~~-~~~~~~~~~~v~~~~~s~~~~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGEK-VVDFEAHPDYIRSIAVHPTKP-YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             TTTCCE-EEEEECCSSCEEEEEECSSSS-EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCcE-EEEEecCCCCEEEEEEeCCCC-EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            998764 778889999999999999987 5668999999999999887 5555554   4589999999 7889999999


Q ss_pred             CCcEEEEECCCCeEEEEEcCCC-CCeEEEEEcC--CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC
Q 003271          701 ENYISILDVETQVCRLKLQGHK-NQVHSVCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP  776 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~-~~I~sl~fsp--dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp  776 (835)
                      |+.|++||+.++.....+..+. ..+.+++|+|  ++.+|++++ |+.|++||+.++   .++..+..|...|.+++|+|
T Consensus       162 dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~---~~~~~~~~~~~~v~~~~~~~  238 (814)
T 3mkq_A          162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTK---SCVATLEGHMSNVSFAVFHP  238 (814)
T ss_dssp             TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTT---EEEEEEECCSSCEEEEEECS
T ss_pred             CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcC
Confidence            9999999999887777666554 8899999999  999999999 999999999887   78888889999999999999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCC--EEEEEECCCcEEEeC
Q 003271          777 TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG--MVASASHDKCVKIWK  835 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~--~LaSgs~DG~V~IWd  835 (835)
                      ++++|++++.||.|++||+.+++.+ .+..|...|.+++|+|++.  ++++++ |+.+.+|+
T Consensus       239 ~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~  299 (814)
T 3mkq_A          239 TLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGF-DNGFTVLS  299 (814)
T ss_dssp             SSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEECTTCGGGEEEEEE-TTEEEEEE
T ss_pred             CCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEccCCCceEEEEEe-CCCEEEEE
Confidence            9999999999999999999998877 6778889999999999987  455555 55666663

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=1.2e-32  Score=305.64  Aligned_cols=287  Identities=20%  Similarity=0.363  Sum_probs=235.1

Q ss_pred             EEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeEEEEe-------------ccCCCCeEEEEECC-CCCE
Q 003271          547 EFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTL-------------EEHTQWITDVRFSP-SLSR  611 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~i~~l-------------~~h~~~V~sv~fsp-dg~~  611 (835)
                      ....+.+|.+.|++++|+| ++++||+|+.||.|+|||+.+++....+             .+|...|.+++|+| ++.+
T Consensus        35 ~~~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  114 (408)
T 4a11_B           35 DRDVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGM  114 (408)
T ss_dssp             TEEECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTC
T ss_pred             ceeeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcE
Confidence            3556788999999999999 9999999999999999999876544333             25999999999999 7889


Q ss_pred             EEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC--cEEEEEeCCCcEEEEECCCCeeeeEee---cCceEE
Q 003271          612 LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE--DLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQM  686 (835)
Q Consensus       612 Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~--~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l  686 (835)
                      |++++.||.|++||+.++.. ...+. +...+.++.|++.+.  .++++++.|+.|++||+++++.+..+.   ..+.++
T Consensus       115 l~s~~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~  192 (408)
T 4a11_B          115 FTSSSFDKTLKVWDTNTLQT-ADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAV  192 (408)
T ss_dssp             EEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEE
T ss_pred             EEEEeCCCeEEEeeCCCCcc-ceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEE
Confidence            99999999999999998663 44443 778899999998643  378899999999999999988877765   458999


Q ss_pred             EEecCCC-EEEEEEcCCcEEEEECCCCe-EEEEE---------------cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEE
Q 003271          687 RFQPRLG-RILAAAIENYISILDVETQV-CRLKL---------------QGHKNQVHSVCWNTSGEYLASVS-DELVRVW  748 (835)
Q Consensus       687 ~fsp~~~-~ll~~s~dg~I~IwDl~t~~-~i~~l---------------~~h~~~I~sl~fspdg~~Lasgs-Dg~I~Iw  748 (835)
                      +|+|++. .+++++.|+.|++||+++.. ++..+               ..|...|.+++|+|++.+|++++ |+.|++|
T Consensus       193 ~~~~~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vw  272 (408)
T 4a11_B          193 SWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLW  272 (408)
T ss_dssp             EECSSCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             EECCCCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEE
Confidence            9999998 48899999999999998764 44444               46888999999999999999999 9999999


Q ss_pred             EcCCCCCcceEEE--eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEE
Q 003271          749 SIGSGSKGECIHE--LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASA  825 (835)
Q Consensus       749 Dl~t~~~~~~i~~--l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSg  825 (835)
                      |+.++........  .......+........+..+++++.++.|++||+.+++.+ .+.+|...|++++|+|++.+|+++
T Consensus       273 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~  352 (408)
T 4a11_B          273 NSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSG  352 (408)
T ss_dssp             ETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             ECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEE
Confidence            9998743211111  0111122222233344566888889999999999999887 677899999999999999999999


Q ss_pred             ECCCcEEEeC
Q 003271          826 SHDKCVKIWK  835 (835)
Q Consensus       826 s~DG~V~IWd  835 (835)
                      +.||.|+|||
T Consensus       353 ~~dg~i~iw~  362 (408)
T 4a11_B          353 SRDCNILAWV  362 (408)
T ss_dssp             ETTSCEEEEE
T ss_pred             CCCCeEEEEe
Confidence            9999999996

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=2e-32  Score=329.93  Aligned_cols=273  Identities=16%  Similarity=0.271  Sum_probs=232.8

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ..++++|+.|+.|++|.......              ........+.+|...|.+++|+|++++|++|+.|++|+|||+.
T Consensus       395 ~~~l~s~s~D~~i~~W~~~~~~~--------------~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~  460 (694)
T 3dm0_A          395 ADIIVSASRDKSIILWKLTKDDK--------------AYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA  460 (694)
T ss_dssp             CSEEEEEETTSEEEEEECCCSTT--------------CSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             CCEEEEEeCCCcEEEEEccCCCc--------------ccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECC
Confidence            46899999999999995443211              1112356788999999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE---eecCCCCeEEEEEcCCCC-cEEEEEeC
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT---FTGHSTTVMSLDFHPSKE-DLLCSCDN  661 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~---~~~h~~~V~sl~fsp~g~-~ll~sgs~  661 (835)
                      +++.+..+.+|...|.+++|+|++++|++|+.|++|+|||+..... ...   ..+|...|.+++|+|++. .++++|+.
T Consensus       461 ~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~  539 (694)
T 3dm0_A          461 AGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECK-YTISEGGEGHRDWVSCVRFSPNTLQPTIVSASW  539 (694)
T ss_dssp             TTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEE-EEECSSTTSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred             CCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcc-eeeccCCCCCCCcEEEEEEeCCCCcceEEEEeC
Confidence            9999999999999999999999999999999999999999865322 222   246888999999999863 57889999


Q ss_pred             CCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 003271          662 NSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA  738 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~La  738 (835)
                      |+.|++||++++++...+.+   .+.+++|+|++.+|++++.|+.|++||+++++++..+. +...|.+++|+|++.+|+
T Consensus       540 d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~sp~~~~l~  618 (694)
T 3dm0_A          540 DKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLE-ANSVIHALCFSPNRYWLC  618 (694)
T ss_dssp             TSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCB-CSSCEEEEEECSSSSEEE
T ss_pred             CCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEec-CCCcEEEEEEcCCCcEEE
Confidence            99999999999988877654   48999999999999999999999999999999888776 456899999999999999


Q ss_pred             EEeCCeEEEEEcCCCCCcceEEEeecC-------------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          739 SVSDELVRVWSIGSGSKGECIHELSCT-------------------GNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       739 sgsDg~I~IwDl~t~~~~~~i~~l~~~-------------------~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      +++++.|+|||++++   .++..+..+                   ...+.+++|+|++++|++++.||.|+|||+..
T Consensus       619 ~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~  693 (694)
T 3dm0_A          619 AATEHGIKIWDLESK---SIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIGR  693 (694)
T ss_dssp             EEETTEEEEEETTTT---EEEEEECCCCC----------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred             EEcCCCEEEEECCCC---CChhhhccccccccccccccccccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence            988999999999987   555544322                   12378899999999999999999999999853

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.4e-32  Score=351.60  Aligned_cols=283  Identities=21%  Similarity=0.359  Sum_probs=258.4

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      ..+.+|.+.|++++|+|||++||+|+.||+|+|||+.+++.+..+.+|...|.+++|+|++++|++++.|+.|+|||+.+
T Consensus       609 ~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~  688 (1249)
T 3sfz_A          609 LVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSAT  688 (1249)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcE
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYI  704 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I  704 (835)
                      ++ .+..+.+|...|.+++|+|++ ..++++|+.|+.|++||+.+++++..+.   ..+.+++|+|++..+++++.||.|
T Consensus       689 ~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v  767 (1249)
T 3sfz_A          689 GK-LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTL  767 (1249)
T ss_dssp             CC-EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEE
T ss_pred             Cc-eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeE
Confidence            76 478889999999999999963 4578899999999999999999887765   448999999999999999999999


Q ss_pred             EEEECCCCeEEEEEcC-------------CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-cCCCceE
Q 003271          705 SILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-CTGNKFH  770 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~-------------h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-~~~~~V~  770 (835)
                      ++||+.++.....+..             +...+.+++|+|+|.++++++++.|.+||+.++   ..+..+. +|...|.
T Consensus       768 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~---~~~~~~~~~~~~~v~  844 (1249)
T 3sfz_A          768 RLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTS---GLLAEIHTGHHSTIQ  844 (1249)
T ss_dssp             EEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTC---CEEEEEECSSSSCCC
T ss_pred             EEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCC---CceeEEcCCCCCceE
Confidence            9999999887766542             233788999999999999999999999999987   4454444 7889999


Q ss_pred             EEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          771 SCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       771 sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +++|+|++.++++++.++.|++||+.++..+ .+.+|...|.+++|+|++.+|++++.||.|++||
T Consensus       845 ~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~  910 (1249)
T 3sfz_A          845 YCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWE  910 (1249)
T ss_dssp             EEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEECCCCCEEEEEeCCCeEEEEE
Confidence            9999999999999999999999999999877 7789999999999999999999999999999996

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=8.7e-34  Score=318.18  Aligned_cols=272  Identities=16%  Similarity=0.207  Sum_probs=232.3

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      .+++++|+|++++|++++.|+.|++||+.+++....+..| ..+....|++++++|++++.||.|+|||+.++. ....+
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~  135 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSKMLKRA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNL-QREID  135 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTTTSCSC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSCE-EEEET
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceeeEEecC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCcc-eeeec
Confidence            3457999999999999999999999999987776666656 455566789999999999999999999999765 46677


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      .+|...|.+++|+|++. +|++++.|+.|++||+.+++.+..+.   ..+.+++|+|++..|++++.|+.|++||+++++
T Consensus       136 ~~h~~~v~~~~~~~~~~-~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~  214 (420)
T 3vl1_A          136 QAHVSEITKLKFFPSGE-ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGT  214 (420)
T ss_dssp             TSSSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccccCccEEEEECCCCC-EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCc
Confidence            89999999999999976 77799999999999999998887766   448999999999999999999999999999999


Q ss_pred             EEEEEcC---CCCCeEEEE---------------------EcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe-ecCCC
Q 003271          714 CRLKLQG---HKNQVHSVC---------------------WNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGN  767 (835)
Q Consensus       714 ~i~~l~~---h~~~I~sl~---------------------fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l-~~~~~  767 (835)
                      .+..+..   |...|.+++                     |+|++++|++++ |+.|++||++++   ..+..+ ..|..
T Consensus       215 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~  291 (420)
T 3vl1_A          215 TIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSK---EQTIQLPSKFTC  291 (420)
T ss_dssp             EEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTC---CEEEEECCTTSS
T ss_pred             eeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCC---ceeEEcccccCC
Confidence            9988875   444455544                     578999999999 999999999987   444444 45788


Q ss_pred             ceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCCcE--EEecc-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          768 KFHSCVFHPTFP-SLLVIGCYETLELWNMTENKT--LTLSA-HDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       768 ~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~~~--~~l~~-h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|.+++|+|++. +|++++.|+.|++||+.+++.  ..+.. |...|.++.| +++++|++++.||.|+|||
T Consensus       292 ~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~  362 (420)
T 3vl1_A          292 SCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDI  362 (420)
T ss_dssp             CEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEE
T ss_pred             CceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-CCCCEEEEecCCccEEEEe
Confidence            999999999999 999999999999999998754  35554 7778888865 5788999999999999996

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=1.5e-32  Score=311.79  Aligned_cols=270  Identities=22%  Similarity=0.404  Sum_probs=240.5

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      .+....+|...|+|+.|  ++++|++|+.||.|++||+.+++.+..+.+|...|.+++|  ++.+|++|+.||.|++||+
T Consensus       125 ~~~~~~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          125 RIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEES
T ss_pred             EEecccCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEEC
Confidence            34445678888999888  7889999999999999999999999999999999999999  7889999999999999999


Q ss_pred             CCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEee---cCceEEEEecCCCEEEEEEc
Q 003271          627 ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK---SGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       627 ~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~~~~---~~i~~l~fsp~~~~ll~~s~  700 (835)
                      .+++. +..+.+|...|.+++|+++   ++++|+.||.|++||+.++...   ..+.   ..+.++.|  +++.+++++.
T Consensus       201 ~~~~~-~~~~~~h~~~v~~l~~~~~---~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          201 NTGEM-LNTLIHHCEAVLHLRFNNG---MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SSCCE-EEEECCCCSCEEEEECCTT---EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCCcE-EEEEcCCCCcEEEEEEcCC---EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            98764 7888899999999999743   7889999999999999987654   3332   34677777  6789999999


Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271          701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  779 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~  779 (835)
                      |+.|++||+++++.+..+.+|...|.++.|  ++.+|++++ |+.|++||++++   .++..+..|...|.+++|  ++.
T Consensus       275 dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~~~~--~~~  347 (435)
T 1p22_A          275 DRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRCIRF--DNK  347 (435)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEC--CSS
T ss_pred             CCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCC---CEEEEEeCCcCcEEEEEe--cCC
Confidence            999999999999999999999999999999  467899888 999999999987   788899999999999999  788


Q ss_pred             EEEEEEcCCeEEEEEcCCCc---------EE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          780 SLLVIGCYETLELWNMTENK---------TL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       780 ~L~sgs~dg~I~IwDl~~~~---------~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|++++.||.|++||+.++.         ++ .+.+|.+.|.+++|  ++.+|++|+.||.|+|||
T Consensus       348 ~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd  411 (435)
T 1p22_A          348 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD  411 (435)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred             EEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEE
Confidence            99999999999999997654         44 78899999999999  688999999999999997

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=8.8e-32  Score=289.07  Aligned_cols=268  Identities=22%  Similarity=0.395  Sum_probs=227.4

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      +.+|+||+++ +||+|. |++|+|||+.+++++..+  .+|...|++++|+|++++|++|+.||+|+|||+.+++ .+..
T Consensus        28 ~~~l~WS~~~-~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~-~~~~  104 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQK-RLRN  104 (318)
T ss_dssp             CBCEEECTTS-EEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTE-EEEE
T ss_pred             ceEEEECCCC-EEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCce-eEEE
Confidence            5789999986 777765 999999999999988766  4678889999999999999999999999999999876 4788


Q ss_pred             eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET  711 (835)
Q Consensus       636 ~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t  711 (835)
                      +.+|...+.++.+.+   .++++++.++.+++|+...... +..+.   ..+..+.+.+++..+++++.|+.|++||+++
T Consensus       105 ~~~h~~~~~~~~~~~---~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~  181 (318)
T 4ggc_A          105 MTSHSARVGSLSWNS---YILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP  181 (318)
T ss_dssp             EECCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSC
T ss_pred             ecCccceEEEeecCC---CEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCC
Confidence            899999998887764   3888999999999999987643 33333   4488899999999999999999999999987


Q ss_pred             Ce----EEEEEcCCCCCeEEEEEcCCCCEE-E--EEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271          712 QV----CRLKLQGHKNQVHSVCWNTSGEYL-A--SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       712 ~~----~i~~l~~h~~~I~sl~fspdg~~L-a--sgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s  783 (835)
                      ++    .......+...|.++.+++++..+ +  +++ ++.|++||....   ... ....+...+..+.|++++..+++
T Consensus       182 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~---~~~-~~~~~~~~v~~~~~~~~~~~~~~  257 (318)
T 4ggc_A          182 GEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSG---ACL-SAVDAHSQVCSILWSPHYKELIS  257 (318)
T ss_dssp             BTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTC---CEE-EEEECSSCEEEEEEETTTTEEEE
T ss_pred             CcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEecccc---ccc-ccccceeeeeeeeecccccceEE
Confidence            64    334556688899999999976533 3  333 789999999876   333 33456778999999999999888


Q ss_pred             EE--cCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          784 IG--CYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       784 gs--~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++  .|+.|+|||+.+++++ .+.+|.+.|++++|+|++++||||+.||+|+|||
T Consensus       258 ~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd  312 (318)
T 4ggc_A          258 GHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR  312 (318)
T ss_dssp             EECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEEC
T ss_pred             EEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEE
Confidence            76  6889999999999988 7889999999999999999999999999999997

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.2e-31  Score=290.95  Aligned_cols=270  Identities=14%  Similarity=0.164  Sum_probs=239.3

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ...++++|+.|+.|++|.....                   ..+..+.+|.+.|++++|+|++++|++++.||.|++||+
T Consensus        43 ~~~~l~~~~~dg~i~vwd~~~~-------------------~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~  103 (369)
T 3zwl_B           43 EGDLLFSCSKDSSASVWYSLNG-------------------ERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV  103 (369)
T ss_dssp             TSCEEEEEESSSCEEEEETTTC-------------------CEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred             CCCEEEEEeCCCEEEEEeCCCc-------------------hhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEEC
Confidence            3468999999999999943322                   345677899999999999999999999999999999999


Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCCc----------eeEEeecCCC--CeEEEE
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDY----------SLRTFTGHST--TVMSLD  647 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~~----------~~~~~~~h~~--~V~sl~  647 (835)
                      .+++.+..+. |...|.+++|+|++.+|++++.+     +.|++||+.....          ....+..|..  .|.+++
T Consensus       104 ~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (369)
T 3zwl_B          104 SNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAG  182 (369)
T ss_dssp             TTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEE
T ss_pred             CCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEE
Confidence            9999998887 88999999999999999999999     9999999986542          2344555666  899999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271          648 FHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       648 fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~  723 (835)
                      |+|++. ++++++.||.|++||+++ .+.+..+.   ..+.+++|+|++.+|++++.|+.|++||+++++.+..+. +..
T Consensus       183 ~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~  260 (369)
T 3zwl_B          183 WSTKGK-YIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYE-TDC  260 (369)
T ss_dssp             ECGGGC-EEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-CSS
T ss_pred             EcCCCC-EEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECCCCceeeeec-CCC
Confidence            999976 667889999999999998 67776665   458999999999999999999999999999999988887 788


Q ss_pred             CeEEEEEcCCCCEEEEEe-CC--------------eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC
Q 003271          724 QVHSVCWNTSGEYLASVS-DE--------------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE  788 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-Dg--------------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg  788 (835)
                      .+.+++|+|++.++++++ ++              .|++||+.++   ..+..+..|...|.+++|+|++++|++++.|+
T Consensus       261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg  337 (369)
T 3zwl_B          261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE---EEIGRVQGHFGPLNTVAISPQGTSYASGGEDG  337 (369)
T ss_dssp             CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC---CEEEEEECCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC---cchhheecccCcEEEEEECCCCCEEEEEcCCC
Confidence            999999999999999998 66              8999999888   78888899999999999999999999999999


Q ss_pred             eEEEEEcCCCc
Q 003271          789 TLELWNMTENK  799 (835)
Q Consensus       789 ~I~IwDl~~~~  799 (835)
                      .|+||++..+.
T Consensus       338 ~v~iw~~~~~~  348 (369)
T 3zwl_B          338 FIRLHHFEKSY  348 (369)
T ss_dssp             EEEEEEECHHH
T ss_pred             eEEEEECcccc
Confidence            99999997654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2e-32  Score=304.45  Aligned_cols=274  Identities=17%  Similarity=0.147  Sum_probs=238.1

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC----C---CEEEEEeCCCeE
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD----G---KLLATGGHDKKA  579 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd----g---~~Lasgs~Dg~I  579 (835)
                      .++++|+.|+.|++|........             ..+..+..+.+|...|++++|+|+    +   ++|++++.|+.|
T Consensus        27 ~~l~s~~~dg~i~iw~~~~~~~~-------------~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i   93 (397)
T 1sq9_A           27 SFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDL   93 (397)
T ss_dssp             SEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCE
T ss_pred             CeEEEEcCCCEEEEEECCCcccc-------------cCCCcceEEecCCCcEEEEEEecccccCCccccEEEEEcCCCCE
Confidence            68999999999999955443211             112345667799999999999999    9   999999999999


Q ss_pred             EEEEcCCCeE-----EEEeccC-----CCCeEEEEEC----CCCCE-EEEEECCCeEEEEecCC------CCceeE----
Q 003271          580 VLWCTESFTV-----KSTLEEH-----TQWITDVRFS----PSLSR-LATSSADRTVRVWDTEN------PDYSLR----  634 (835)
Q Consensus       580 ~VWd~~t~~~-----i~~l~~h-----~~~V~sv~fs----pdg~~-Latgs~Dg~I~IWDl~t------~~~~~~----  634 (835)
                      ++||+.+++.     +..+..|     ...|.+++|+    |++.+ |++++.||.|++||+.+      ... +.    
T Consensus        94 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~  172 (397)
T 1sq9_A           94 LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT-LNWSPT  172 (397)
T ss_dssp             EEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT-TCCCCE
T ss_pred             EEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce-eeccCc
Confidence            9999988876     7888888     5899999999    99999 99999999999999987      443 33    


Q ss_pred             -Ee-------ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---------CceEEEEecCCCEEEE
Q 003271          635 -TF-------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---------GATQMRFQPRLGRILA  697 (835)
Q Consensus       635 -~~-------~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---------~i~~l~fsp~~~~ll~  697 (835)
                       .+       ..|...|.+++|+|++  ++++++.|+.|++||+++++.+..+..         .+.+++|+|++.+|++
T Consensus       173 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~  250 (397)
T 1sq9_A          173 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  250 (397)
T ss_dssp             EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             ceeeeeeccccCCCCCceEEEECCCc--eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEE
Confidence             45       4488999999999997  788999999999999999988877654         4889999999999999


Q ss_pred             EEcC---CcEEEEECCCCeEEEEEcC-------------CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEE
Q 003271          698 AAIE---NYISILDVETQVCRLKLQG-------------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  760 (835)
Q Consensus       698 ~s~d---g~I~IwDl~t~~~i~~l~~-------------h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~  760 (835)
                      ++.|   +.|++||+++++.+..+.+             |...|.+++|+|++.+|++++ |+.|+|||++++   .++.
T Consensus       251 ~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~  327 (397)
T 1sq9_A          251 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT  327 (397)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred             EecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCC---ceeE
Confidence            9999   9999999999999999998             999999999999999999999 999999999987   7788


Q ss_pred             Eee------cC---------------CCceEEEEEeCCC----------CEEEEEEcCCeEEEEEcCCCc
Q 003271          761 ELS------CT---------------GNKFHSCVFHPTF----------PSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       761 ~l~------~~---------------~~~V~sv~fspdg----------~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      .+.      .|               ...|.+++|+|++          .+|++++.|+.|++||+.+++
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g~  397 (397)
T 1sq9_A          328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGGK  397 (397)
T ss_dssp             EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC--
T ss_pred             EEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCCC
Confidence            888      77               8999999999998          799999999999999998764

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=6.1e-32  Score=296.99  Aligned_cols=277  Identities=17%  Similarity=0.224  Sum_probs=233.8

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ...++++|+.|+.|++|....                 ..+..+..+.+|...|++++|+|++++|++++.|+.|++||+
T Consensus        19 ~~~~l~~~~~d~~v~i~~~~~-----------------~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~   81 (372)
T 1k8k_C           19 DRTQIAICPNNHEVHIYEKSG-----------------NKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTL   81 (372)
T ss_dssp             TSSEEEEECSSSEEEEEEEET-----------------TEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEE
T ss_pred             CCCEEEEEeCCCEEEEEeCCC-----------------CcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEEC
Confidence            347899999999999993322                 124467788899999999999999999999999999999999


Q ss_pred             CCCeEEEE--eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271          585 ESFTVKST--LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (835)
Q Consensus       585 ~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~sg  659 (835)
                      .+++....  +..|...|.+++|+|++++|++++.|+.|++||+.....   .......|...|.+++|+|++. +++++
T Consensus        82 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~  160 (372)
T 1k8k_C           82 KGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSV-LLAAG  160 (372)
T ss_dssp             ETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSS-EEEEE
T ss_pred             CCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCC-EEEEE
Confidence            98875544  467999999999999999999999999999999998763   2344467899999999999876 67789


Q ss_pred             eCCCcEEEEECC------------------CCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271          660 DNNSEIRYWSIN------------------NGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  718 (835)
Q Consensus       660 s~Dg~I~iwDl~------------------s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l  718 (835)
                      +.|+.|++||++                  .++++..+.   ..+.+++|+|++..+++++.|+.|++||+++++++..+
T Consensus       161 ~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  240 (372)
T 1k8k_C          161 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATL  240 (372)
T ss_dssp             ETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEE
T ss_pred             cCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEE
Confidence            999999999954                  566666664   45899999999999999999999999999999999999


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCC--CC-----------------------------CcceE------EE
Q 003271          719 QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGS--GS-----------------------------KGECI------HE  761 (835)
Q Consensus       719 ~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t--~~-----------------------------~~~~i------~~  761 (835)
                      ..|...|.+++|+|++.+|+++.|+.|++|++.+  +.                             .....      ..
T Consensus       241 ~~~~~~v~~~~~~~~~~~l~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (372)
T 1k8k_C          241 ASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAG  320 (372)
T ss_dssp             ECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CC
T ss_pred             ccCCCCeEEEEEecCCCEEEEEeCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccccccccCcccccc
Confidence            9999999999999999999988899999999987  31                             00110      22


Q ss_pred             e-ecCCCceEEEEEe-CCC---CEEEEEEcCCeEEEEEcCCCc
Q 003271          762 L-SCTGNKFHSCVFH-PTF---PSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       762 l-~~~~~~V~sv~fs-pdg---~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      + .+|...|.+++|+ +++   .+|++++.||.|++||+.+++
T Consensus       321 ~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~  363 (372)
T 1k8k_C          321 LDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE  363 (372)
T ss_dssp             CSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred             ccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence            3 4789999999966 666   899999999999999986643

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.1e-32  Score=336.72  Aligned_cols=329  Identities=11%  Similarity=0.044  Sum_probs=245.8

Q ss_pred             ccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC-CCEEEEEeC
Q 003271          497 SAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD-GKLLATGGH  575 (835)
Q Consensus       497 s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd-g~~Lasgs~  575 (835)
                      +....+.....++++|+.|+.|++|...........+...+..        ...+.+|.+.|++++|+|+ +.+|++|+.
T Consensus       101 V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~--------~~~~~~h~~~V~sl~~sp~~~~~l~~g~~  172 (902)
T 2oaj_A          101 ITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS--------SFFPAARLSPIVSIQWNPRDIGTVLISYE  172 (902)
T ss_dssp             EEEEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHH--------HTCSSSCCCCCCEEEEETTEEEEEEEECS
T ss_pred             EEEEEECCCCCEEEEEcCCCcEEEEECCCCccccceecccccc--------ccccccCCCCeEEEEEccCCCCEEEEEeC
Confidence            3345556677899999999999999554331000000000000        0234789999999999996 578999999


Q ss_pred             CCeEEEEEcCCCeEEEEeccC------------------CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE-Ee
Q 003271          576 DKKAVLWCTESFTVKSTLEEH------------------TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-TF  636 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h------------------~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~-~~  636 (835)
                      |+.| |||+.+++.+..+..|                  ...|++++|+|++.+|++++.||+|+|||+.+++.... .+
T Consensus       173 dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l  251 (902)
T 2oaj_A          173 YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTV  251 (902)
T ss_dssp             SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECS
T ss_pred             CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEEEEee
Confidence            9999 9999999999888766                  57799999999999999999999999999988764221 12


Q ss_pred             ---ec-------------CCCCeEEEEEc----CCCCcEEEEEeCC----------------------------------
Q 003271          637 ---TG-------------HSTTVMSLDFH----PSKEDLLCSCDNN----------------------------------  662 (835)
Q Consensus       637 ---~~-------------h~~~V~sl~fs----p~g~~ll~sgs~D----------------------------------  662 (835)
                         ..             |...|.+++|+    |++..++++|+.|                                  
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~  331 (902)
T 2oaj_A          252 FETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANP  331 (902)
T ss_dssp             SCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSC
T ss_pred             cccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCccccchhhhhhhhcCc
Confidence               11             34578899995    3333455555333                                  


Q ss_pred             ------------------------------------------CcEEEEECCCCeeeeE----------------------
Q 003271          663 ------------------------------------------SEIRYWSINNGSCAGV----------------------  678 (835)
Q Consensus       663 ------------------------------------------g~I~iwDl~s~~~~~~----------------------  678 (835)
                                                                +.|++||+.++.....                      
T Consensus       332 ~~~~~~~~~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~  411 (902)
T 2oaj_A          332 KQMKIFPLPTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAAS  411 (902)
T ss_dssp             SEEEEECCSSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEE
T ss_pred             cceEEEecCCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEE
Confidence                                                      4445555443321110                      


Q ss_pred             -------------------ee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEE----EE--Ec-----CCCCCe
Q 003271          679 -------------------FK---SGATQMRFQPRLGRILAAAIENYISILDVETQVCR----LK--LQ-----GHKNQV  725 (835)
Q Consensus       679 -------------------~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i----~~--l~-----~h~~~I  725 (835)
                                         +.   ..+..++|+|++..+++++.|+.|++||+.++...    ..  +.     +|...|
T Consensus       412 ~~~~~w~~~~~~~~~~~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V  491 (902)
T 2oaj_A          412 VPNKLWLGALSAAQNKDYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAV  491 (902)
T ss_dssp             EEHHHHHHHHHTTBCCCCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCE
T ss_pred             cCHHHHHHHHhcccCCCCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCce
Confidence                               00   01223456788899999999999999999876321    11  22     788999


Q ss_pred             EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC------------------------------------------cceEEEe
Q 003271          726 HSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------------------------------------GECIHEL  762 (835)
Q Consensus       726 ~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~------------------------------------------~~~i~~l  762 (835)
                      .+|+|+|++++|++++ |++|+|||+.+++.                                          ..++..+
T Consensus       492 ~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l  571 (902)
T 2oaj_A          492 DKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAV  571 (902)
T ss_dssp             EEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEE
T ss_pred             eEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEE
Confidence            9999999999999999 99999999986521                                          1246778


Q ss_pred             ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE------e-ccCCCCeeEEEEe-----CCC---CEEEEEEC
Q 003271          763 SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT------L-SAHDKLVSSLAAS-----TVN---GMVASASH  827 (835)
Q Consensus       763 ~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~------l-~~h~~~V~~la~s-----pdg---~~LaSgs~  827 (835)
                      .+|...|++++|+|+| +|++|+.|++|+|||+++..++.      + .+|.+.|++|+|+     |||   .+|++|+.
T Consensus       572 ~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~  650 (902)
T 2oaj_A          572 HANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTD  650 (902)
T ss_dssp             CCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEET
T ss_pred             EcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEec
Confidence            8899999999999999 99999999999999998887652      2 2789999999999     885   79999999


Q ss_pred             CCcEEEeC
Q 003271          828 DKCVKIWK  835 (835)
Q Consensus       828 DG~V~IWd  835 (835)
                      |++|++||
T Consensus       651 D~tv~~wd  658 (902)
T 2oaj_A          651 MGEVITYK  658 (902)
T ss_dssp             TSEEEEEE
T ss_pred             CCcEEEEE
Confidence            99999996

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=1.7e-31  Score=303.53  Aligned_cols=270  Identities=26%  Similarity=0.473  Sum_probs=240.3

Q ss_pred             EEEEecCCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          547 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       547 ~i~~l~gH~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ....+.+|.+.| .|+  ++++++|++|+.||.|+|||+.+++.+..+.+|...|.+++|+  +.+|++|+.||+|++||
T Consensus       110 ~~~~l~~h~~~v~~~~--~~~g~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          110 SPKVLKGHDDHVITCL--QFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWN  185 (445)
T ss_dssp             CCEEEECSTTSCEEEE--EEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEE
T ss_pred             eeEEecccCCCcEEEE--EEcCCEEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEE
Confidence            456688999875 554  4568899999999999999999999999999999999999997  56999999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCC
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      +.+++ .+..+.+|...|.++.|++   ..+++|+.||.|++||+.+++++..+..   .+.++.+  ++..+++++.|+
T Consensus       186 ~~~~~-~~~~~~~h~~~v~~~~~~~---~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg  259 (445)
T 2ovr_B          186 AETGE-CIHTLYGHTSTVRCMHLHE---KRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDF  259 (445)
T ss_dssp             TTTTE-EEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTS
T ss_pred             CCcCc-EEEEECCCCCcEEEEEecC---CEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCC
Confidence            99876 4788889999999999974   3688999999999999999998877764   3677777  788999999999


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271          703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                      .|++||+++++++..+.+|...|.+++|  ++.+|++++ |+.|++||++++   .++..+..|...+.++.++  +.+|
T Consensus       260 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~---~~~~~~~~~~~~v~~~~~~--~~~l  332 (445)
T 2ovr_B          260 MVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELK--DNIL  332 (445)
T ss_dssp             CEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTC---CEEEEECCCCSCEEEEEEE--TTEE
T ss_pred             EEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCC---CEEEEEcCCcccEEEEEEe--CCEE
Confidence            9999999999999999999999999999  788999998 999999999988   7888888999999888875  5689


Q ss_pred             EEEEcCCeEEEEEcCCCcEE-Eecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          782 LVIGCYETLELWNMTENKTL-TLSA---HDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~~~~-~l~~---h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++++.|+.|++||+.+++.+ .+..   |...|.+++|+  +.+|++|+.||.|+|||
T Consensus       333 ~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd  388 (445)
T 2ovr_B          333 VSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWD  388 (445)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEE
Confidence            99999999999999998877 4444   88999999995  68999999999999996

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=8.7e-33  Score=300.75  Aligned_cols=247  Identities=21%  Similarity=0.275  Sum_probs=204.7

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECC--CCCEEEEEECCCeEEEEe
Q 003271          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSP--SLSRLATSSADRTVRVWD  625 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWD  625 (835)
                      .+.+|.+.|++++|+|+|++||+|+.|++|+|||+.++.  .+..+.+|.+.|++++|++  ++.+|++|+.|++|+|||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            456999999999999999999999999999999998775  4678899999999999986  489999999999999999


Q ss_pred             cCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeee---eEe---ecCceEEEEecC------
Q 003271          626 TENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCA---GVF---KSGATQMRFQPR------  691 (835)
Q Consensus       626 l~t~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~---~~~---~~~i~~l~fsp~------  691 (835)
                      +.++. .....+.+|...|.+++|+|++ ..+|++|+.|+.|++||++.+...   ..+   ...+.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            98764 2456778899999999999983 357889999999999999875321   222   244788899987      


Q ss_pred             -----------CCEEEEEEcCCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCC----CEEEEEe-CCeEEEEEcCC
Q 003271          692 -----------LGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSG----EYLASVS-DELVRVWSIGS  752 (835)
Q Consensus       692 -----------~~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~fspdg----~~Lasgs-Dg~I~IwDl~t  752 (835)
                                 +.+|++++.|+.|++||++..   .++..+.+|...|.+++|+|++    .+|++++ |++|+|||+.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       368999999999999999854   5677888999999999999986    8899999 99999999986


Q ss_pred             CCCc-ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          753 GSKG-ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       753 ~~~~-~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      .... .....+..|...|.+++|+|++.+|++++.|+.|+||+..
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence            3211 1223345678899999999999999999999999999975

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=4.6e-31  Score=298.34  Aligned_cols=270  Identities=18%  Similarity=0.304  Sum_probs=231.7

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      ++|++| .|++|++|....+                 ....+..+.+|.+.|+||+|+|||++||+|+.||.|+|||+.+
T Consensus       117 n~lAvg-ld~tV~lWd~~tg-----------------~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~  178 (420)
T 4gga_A          117 NVLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ  178 (420)
T ss_dssp             SEEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTT
T ss_pred             CEEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCC
Confidence            477777 5999999944332                 1223344568899999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      ++.+..+.+|...|.++.|+  +.+|++|+.|+.+++||.......+..+.+|...+.++.|+|++. ++++++.|+.|+
T Consensus       179 ~~~~~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~-~l~s~~~D~~v~  255 (420)
T 4gga_A          179 QKRLRNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN  255 (420)
T ss_dssp             TEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             CcEEEEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCC-eeeeeeccccce
Confidence            99999999999999999885  679999999999999999988777888999999999999999976 677999999999


Q ss_pred             EEECCCCeee----eE---eecCceEEEEecCCCEEE-EE--EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          667 YWSINNGSCA----GV---FKSGATQMRFQPRLGRIL-AA--AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       667 iwDl~s~~~~----~~---~~~~i~~l~fsp~~~~ll-~~--s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                      +||..+++..    ..   ....+.+++|+|.+..++ ++  +.|+.|++||+.++.+...+.. ...+.++.|++++..
T Consensus       256 i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~-~~~v~~~~~~~~~~~  334 (420)
T 4gga_A          256 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA-HSQVCSILWSPHYKE  334 (420)
T ss_dssp             EEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEEC-SSCEEEEEEETTTTE
T ss_pred             EEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecc-ccceeeeeecCCCCe
Confidence            9999876532    22   235588999999876554 33  3689999999999999988874 467889999999998


Q ss_pred             EEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          737 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       737 Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      +++++   |+.|+|||+.++   .++.++.+|...|.+++|+|++.+|++++.|++|+|||+.+....
T Consensus       335 lv~~sg~~d~~I~iwd~~~~---~~v~~l~gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~~~~  399 (420)
T 4gga_A          335 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPA  399 (420)
T ss_dssp             EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCSSCC
T ss_pred             EEEEEecCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCCcc
Confidence            88764   889999999988   789999999999999999999999999999999999999776544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-31  Score=300.95  Aligned_cols=271  Identities=18%  Similarity=0.250  Sum_probs=230.8

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ..+++++.|+.|++|....+                .   ....+. .|...|++++|+|++++|++|+.||.|+|||+.
T Consensus       104 ~~l~~~~~d~~v~lw~~~~~----------------~---~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~  164 (401)
T 4aez_A          104 LNVVAVALERNVYVWNADSG----------------S---VSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE  164 (401)
T ss_dssp             TSEEEEEETTEEEEEETTTC----------------C---EEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             CCEEEEECCCeEEEeeCCCC----------------c---EeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECc
Confidence            44677889999999954332                1   122222 389999999999999999999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      +++.+..+.+|...|.+++|  ++.+|++++.||.|++||+......+..+.+|...|.+++|+|++. +|++|+.|+.|
T Consensus       165 ~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~v  241 (401)
T 4aez_A          165 SQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGL-QLASGGNDNVV  241 (401)
T ss_dssp             TCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCE
T ss_pred             CCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCC-EEEEEeCCCeE
Confidence            99999999999999999999  5679999999999999999976667888999999999999999865 77799999999


Q ss_pred             EEEECCCCeeeeEee---cCceEEEEecCCCEEEEEE---cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 003271          666 RYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAA---IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS  739 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s---~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las  739 (835)
                      ++||+++++.+..+.   ..+.+++|+|++..+++.+   .|+.|++||+.+++++..+. +...|.+++|+|++.+|++
T Consensus       242 ~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~s~~~~~l~~  320 (401)
T 4aez_A          242 QIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVD-AGSQVTSLIWSPHSKEIMS  320 (401)
T ss_dssp             EEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEECSSSSEEEE
T ss_pred             EEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEe-CCCcEEEEEECCCCCeEEE
Confidence            999999988877664   4589999999876666544   59999999999999998886 6788999999999999998


Q ss_pred             E--e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          740 V--S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       740 g--s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      +  + |+.|+|||+.++.. .....+..|...|.+++|+|++.+|++++.|+.|++||+.+++.+
T Consensus       321 ~~g~~dg~i~v~~~~~~~~-~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~~~~~  384 (401)
T 4aez_A          321 THGFPDNNLSIWSYSSSGL-TKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYDGDHV  384 (401)
T ss_dssp             EECTTTCEEEEEEEETTEE-EEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC----
T ss_pred             EeecCCCcEEEEecCCccc-eeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCccc
Confidence            4  3 99999999988522 344457789999999999999999999999999999999998876

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=7.3e-32  Score=294.90  Aligned_cols=285  Identities=16%  Similarity=0.231  Sum_probs=234.4

Q ss_pred             CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEe--cCCCCCE
Q 003271          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLI--PASTSKV  558 (835)
Q Consensus       481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l--~gH~~~V  558 (835)
                      ....+.|+++.           .+.+..+++++.++.|++|.....                .....+..+  ..|...|
T Consensus        20 ~v~~i~~~p~~-----------~~~~~~~~~~~~~~~v~vw~~~~~----------------~~~~~~~~~~~~~~~~~v   72 (366)
T 3k26_A           20 PLFGVQFNWHS-----------KEGDPLVFATVGSNRVTLYECHSQ----------------GEIRLLQSYVDADADENF   72 (366)
T ss_dssp             CEEEEEECTTC-----------CTTSCEEEEEEETTEEEEEEECGG----------------GCEEEEEEEECSCTTCCE
T ss_pred             ceEEEEEeccc-----------CCCCceEEEECCCCEEEEEEcCCC----------------cEEEeeeeccccCCCCcE
Confidence            45566666642           123445566666779999944322                112222222  2488999


Q ss_pred             EEEEEeCC----CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCCcee
Q 003271          559 ESCHFSPD----GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       559 ~sl~fSpd----g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      ++++|+|+    +.+|++|+.||.|+|||+.+++.+..+.+|...|.+++|+| ++.+|++++.||.|+|||+.+++. +
T Consensus        73 ~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~  151 (366)
T 3k26_A           73 YTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTL-V  151 (366)
T ss_dssp             EEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEE-E
T ss_pred             EEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeE-E
Confidence            99999999    67999999999999999999999999999999999999999 899999999999999999998764 5


Q ss_pred             EEe---ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-------------------------------e
Q 003271          634 RTF---TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-------------------------------F  679 (835)
Q Consensus       634 ~~~---~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-------------------------------~  679 (835)
                      ..+   ..|...|.+++|+|++. ++++++.|+.|++||+++++....                               .
T Consensus       152 ~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          152 AIFGGVEGHRDEVLSADYDLLGE-KIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             EEECSTTSCSSCEEEEEECTTSS-EEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             EEecccccccCceeEEEECCCCC-EEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence            555   68999999999999876 667889999999999998754432                               3


Q ss_pred             ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe--------------EEEEEcCCCCCeEEEEEcCC--CCEEEEEe-C
Q 003271          680 KSGATQMRFQPRLGRILAAAIENYISILDVETQV--------------CRLKLQGHKNQVHSVCWNTS--GEYLASVS-D  742 (835)
Q Consensus       680 ~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--------------~i~~l~~h~~~I~sl~fspd--g~~Lasgs-D  742 (835)
                      ...+.+++|+  ++.+++++.|+.|++||+.+..              .+..+..|...|.+++|+|+  +.+|++++ |
T Consensus       231 ~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~d  308 (366)
T 3k26_A          231 RNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQV  308 (366)
T ss_dssp             SSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTT
T ss_pred             cceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecC
Confidence            3458899998  6799999999999999998763              47788889999999999999  99999999 9


Q ss_pred             CeEEEEEcCCCCCcc-eEEEeecC--CCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          743 ELVRVWSIGSGSKGE-CIHELSCT--GNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       743 g~I~IwDl~t~~~~~-~i~~l~~~--~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      |.|++||+.++.... .+..+..|  ...|.+++|+|++++|++++.|+.|+|||+.
T Consensus       309 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          309 GKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             SCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             CcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            999999999875433 55567777  7899999999999999999999999999985

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=7.5e-32  Score=290.49  Aligned_cols=245  Identities=20%  Similarity=0.363  Sum_probs=208.6

Q ss_pred             EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEE
Q 003271          591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYW  668 (835)
Q Consensus       591 ~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iw  668 (835)
                      ..+.+|.+.|++++|+|++++|++|+.|++|+|||+.... ..+..+.+|...|.+++|+++ ...+|++|+.|++|++|
T Consensus         3 ~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iW   82 (297)
T 2pm7_B            3 VIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIW   82 (297)
T ss_dssp             EECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEE
T ss_pred             eeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEE
Confidence            4577899999999999999999999999999999997532 346888999999999999864 24588899999999999


Q ss_pred             ECCCCe--eeeEe---ecCceEEEEecC--CCEEEEEEcCCcEEEEECCCCe--EEEEEcCCCCCeEEEEEcCC------
Q 003271          669 SINNGS--CAGVF---KSGATQMRFQPR--LGRILAAAIENYISILDVETQV--CRLKLQGHKNQVHSVCWNTS------  733 (835)
Q Consensus       669 Dl~s~~--~~~~~---~~~i~~l~fsp~--~~~ll~~s~dg~I~IwDl~t~~--~i~~l~~h~~~I~sl~fspd------  733 (835)
                      |+++++  .+..+   ...+.+++|+|+  +..|++++.|+.|++||+++..  ....+.+|...|.+++|+|+      
T Consensus        83 d~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~  162 (297)
T 2pm7_B           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (297)
T ss_dssp             EBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC-----
T ss_pred             EcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccccc
Confidence            998874  33333   345899999997  7899999999999999998753  24567789999999999997      


Q ss_pred             -------CCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEEcCCCc--
Q 003271          734 -------GEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--  799 (835)
Q Consensus       734 -------g~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg---~~L~sgs~dg~I~IwDl~~~~--  799 (835)
                             +++|++++ |+.|+|||++++.. ...+..+.+|...|.+++|+|++   .+|++++.|++|+|||+.+..  
T Consensus       163 ~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~~~~  242 (297)
T 2pm7_B          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNEQGP  242 (297)
T ss_dssp             -------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTTSC
T ss_pred             cCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCcEEEEEeCCCCCc
Confidence                   57899998 99999999987632 12566788999999999999985   789999999999999998743  


Q ss_pred             -E-EEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          800 -T-LTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       800 -~-~~l--~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                       . ..+  ..|...|.+++|+|++++||+++.||.|+||+
T Consensus       243 ~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~  282 (297)
T 2pm7_B          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (297)
T ss_dssp             CEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEE
T ss_pred             cceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEE
Confidence             1 223  46889999999999999999999999999995

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.8e-32  Score=295.65  Aligned_cols=275  Identities=16%  Similarity=0.275  Sum_probs=227.1

Q ss_pred             cEEEeccC---CCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC---CCEEEEEeCCCeEE
Q 003271          507 RFVDDGSL---DDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD---GKLLATGGHDKKAV  580 (835)
Q Consensus       507 ~~l~tGs~---D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd---g~~Lasgs~Dg~I~  580 (835)
                      .++++|+.   |+.|++|......                 ... ....+|...|++++|+|+   +.+|++|+.||.|+
T Consensus        32 ~l~~~~s~~~~d~~v~iw~~~~~~-----------------~~~-~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~   93 (357)
T 3i2n_A           32 KFVTMGNFARGTGVIQLYEIQHGD-----------------LKL-LREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLH   93 (357)
T ss_dssp             EEEEEEC--CCCEEEEEEEECSSS-----------------EEE-EEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEE
T ss_pred             eEEEecCccCCCcEEEEEeCCCCc-----------------ccc-eeeecccCcEEEEEEcCCCCCCceEEEecCCCeEE
Confidence            57788887   8999999443221                 111 122378999999999998   69999999999999


Q ss_pred             EEEcCCCe-EEEEeccCCCCeEEEEE------CCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCC----CeEEEE--
Q 003271          581 LWCTESFT-VKSTLEEHTQWITDVRF------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST----TVMSLD--  647 (835)
Q Consensus       581 VWd~~t~~-~i~~l~~h~~~V~sv~f------spdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~----~V~sl~--  647 (835)
                      +||+.+++ .+..+.+|...|.+++|      +|++++|++++.|+.|++||+.++...+..+..|..    .|.+++  
T Consensus        94 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v~~~~~~  173 (357)
T 3i2n_A           94 IWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAFG  173 (357)
T ss_dssp             EECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCEEEEEEE
T ss_pred             EEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCceEEEEEE
Confidence            99999888 88889999999999955      688999999999999999999987755677765554    899998  


Q ss_pred             --EcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--ecCceEEEEec---CCCEEEEEEcCCcEEEEECCCCeEEEEE--
Q 003271          648 --FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--KSGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKL--  718 (835)
Q Consensus       648 --fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp---~~~~ll~~s~dg~I~IwDl~t~~~i~~l--  718 (835)
                        |+|++. ++++++.|+.|++||+++++.....  ...+.+++|+|   ++..+++++.|+.|++||+++++.+..+  
T Consensus       174 ~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  252 (357)
T 3i2n_A          174 NAYNQEER-VVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFAS  252 (357)
T ss_dssp             CCCC-CCC-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred             eccCCCCC-EEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceee
Confidence              667765 7778999999999999998876544  35699999999   8999999999999999999876544333  


Q ss_pred             ---cCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCc----------------ceEEEeecCCCceEEEEEeCC
Q 003271          719 ---QGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSKG----------------ECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       719 ---~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~----------------~~i~~l~~~~~~V~sv~fspd  777 (835)
                         .+|...|.+++|+|++. +|++++ |+.|++||++.....                ..+..+..|...|.+++|+|+
T Consensus       253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~  332 (357)
T 3i2n_A          253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPD  332 (357)
T ss_dssp             EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCEEEEEECSS
T ss_pred             eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCeeEEEEcCC
Confidence               38999999999999998 788888 999999999875432                467788899999999999999


Q ss_pred             CCEEE-EEEcCCeEEEEEcCCCcE
Q 003271          778 FPSLL-VIGCYETLELWNMTENKT  800 (835)
Q Consensus       778 g~~L~-sgs~dg~I~IwDl~~~~~  800 (835)
                      +++|+ +++.|+.|+|||+.+.+.
T Consensus       333 ~~~l~~s~~~d~~i~iw~~~~~~~  356 (357)
T 3i2n_A          333 KRGLCVCSSFDQTVRVLIVTKLNK  356 (357)
T ss_dssp             STTEEEEEETTSEEEEEEECC---
T ss_pred             CCeEEEEecCCCcEEEEECCCccc
Confidence            99998 799999999999987653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.6e-31  Score=291.99  Aligned_cols=249  Identities=21%  Similarity=0.320  Sum_probs=215.5

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--CCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEE
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV  623 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~I  623 (835)
                      +..+.+|.+.|++++|+|++++||+|+.||.|+|||+.  +++.+..+.+|...|++++|+++  +.+|++++.||.|+|
T Consensus         4 ~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~i   83 (379)
T 3jrp_A            4 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   83 (379)
T ss_dssp             -CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEE
T ss_pred             cEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEE
Confidence            45678999999999999999999999999999999998  66778889999999999999987  999999999999999


Q ss_pred             EecCCCCc-eeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeee--Ee---ecCceEEEEec-----
Q 003271          624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAG--VF---KSGATQMRFQP-----  690 (835)
Q Consensus       624 WDl~t~~~-~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~---~~~i~~l~fsp-----  690 (835)
                      ||+.++.. .+..+..|...|.+++|+|+  +. ++++++.|+.|++||+++.....  .+   ...+.+++|+|     
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCC-EEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            99998752 46777889999999999998  54 77799999999999998874332  22   24589999999     


Q ss_pred             --------CCCEEEEEEcCCcEEEEECCCC----eEEEEEcCCCCCeEEEEEcCC---CCEEEEEe-CCeEEEEEcCCCC
Q 003271          691 --------RLGRILAAAIENYISILDVETQ----VCRLKLQGHKNQVHSVCWNTS---GEYLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       691 --------~~~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h~~~I~sl~fspd---g~~Lasgs-Dg~I~IwDl~t~~  754 (835)
                              ++..+++++.|+.|++||++++    .....+.+|...|.+++|+|+   +.+|++++ |+.|+|||++++.
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQ  242 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESSTT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCCC
Confidence                    6899999999999999999865    355678889999999999999   89999999 9999999999864


Q ss_pred             CcceEEEe--ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          755 KGECIHEL--SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       755 ~~~~i~~l--~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      .......+  ..+...|.+++|+|++.+|++++.|+.|++||+..
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~  287 (379)
T 3jrp_A          243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  287 (379)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEE
T ss_pred             ccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCC
Confidence            32233333  33788999999999999999999999999999873

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-30  Score=279.72  Aligned_cols=265  Identities=16%  Similarity=0.209  Sum_probs=228.3

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      +.++++|+.|+.|++|....                   ......+..|...|.+++|+|++++|++|+.|+.|++|++.
T Consensus        29 ~~~l~s~~~dg~v~vw~~~~-------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~   89 (313)
T 3odt_A           29 DSKVASVSRDGTVRLWSKDD-------------------QWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLF   89 (313)
T ss_dssp             TTEEEEEETTSEEEEEEESS-------------------SEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETT
T ss_pred             CCEEEEEEcCCcEEEEECCC-------------------CEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEee
Confidence            46899999999999994322                   13456677899999999999999999999999999999986


Q ss_pred             CC---eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271          586 SF---TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       586 t~---~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      ..   +.+..+.+|...|.+++|  ++.+|++++.|+.|++||  . ......+..|...|.+++|+|....++++++.|
T Consensus        90 ~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~-~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d  164 (313)
T 3odt_A           90 ATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--E-GSLVYNLQAHNASVWDAKVVSFSENKFLTASAD  164 (313)
T ss_dssp             CCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--T-TEEEEEEECCSSCEEEEEEEETTTTEEEEEETT
T ss_pred             ecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--C-CcEEEecccCCCceeEEEEccCCCCEEEEEECC
Confidence            53   667788899999999999  577999999999999999  2 335778888999999999998445578899999


Q ss_pred             CcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEE
Q 003271          663 SEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA  738 (835)
Q Consensus       663 g~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~La  738 (835)
                      +.|++||.  .+....+.    ..+.+++|+|++. +++++.|+.|++||+++++.+..+.+|...|.+++|+|++. |+
T Consensus       165 ~~i~i~d~--~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l~  240 (313)
T 3odt_A          165 KTIKLWQN--DKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-IV  240 (313)
T ss_dssp             SCEEEEET--TEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-EE
T ss_pred             CCEEEEec--CceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-EE
Confidence            99999994  34444433    4589999999977 99999999999999999999999999999999999999995 55


Q ss_pred             EEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE
Q 003271          739 SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT  802 (835)
Q Consensus       739 sgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~  802 (835)
                      +++ |+.|++||+.++   ..+..+..|...|.+++|+|++. +++++.|+.|++||+.+++...
T Consensus       241 ~~~~dg~v~iwd~~~~---~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          241 SCGEDRTVRIWSKENG---SLKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             EEETTSEEEEECTTTC---CEEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC
T ss_pred             EEecCCEEEEEECCCC---ceeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceee
Confidence            666 999999999988   78888889999999999999998 7789999999999999887653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=100.00  E-value=1.6e-31  Score=299.70  Aligned_cols=276  Identities=14%  Similarity=0.231  Sum_probs=233.2

Q ss_pred             CEEEEEEeCCCCEE-EEEeCCCeEEEEEcCCCe----EEEEeccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCCCC
Q 003271          557 KVESCHFSPDGKLL-ATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       557 ~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~t~~----~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~  630 (835)
                      ....++++|+...+ ++++.||.|+||++....    .+..+.+|.+.|++++|+| ++.+|++|+.||.|+|||+.++.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~  115 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGG  115 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTC
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCC
Confidence            45568899886544 457889999999996643    2345778999999999999 89999999999999999999864


Q ss_pred             ------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe--e---cCceEEEEecCCCEEEEEE
Q 003271          631 ------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF--K---SGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       631 ------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~--~---~~i~~l~fsp~~~~ll~~s  699 (835)
                            ..+..+.+|...|.+++|+|++..+|++++.|+.|++||+++++.+..+  .   ..+.+++|+|++..|++++
T Consensus       116 ~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  195 (402)
T 2aq5_A          116 LVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSC  195 (402)
T ss_dssp             CSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEE
T ss_pred             CccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEe
Confidence                  3467888999999999999998778999999999999999999988777  3   4589999999999999999


Q ss_pred             cCCcEEEEECCCCeEEEEE-cCCCCC-eEEEEEcCCCCEEEEE---e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          700 IENYISILDVETQVCRLKL-QGHKNQ-VHSVCWNTSGEYLASV---S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       700 ~dg~I~IwDl~t~~~i~~l-~~h~~~-I~sl~fspdg~~Lasg---s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      .|+.|++||+++++.+..+ ..|... +.+++|+|++.+|+++   + |+.|++||+++......... ..+...+.+++
T Consensus       196 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~-~~~~~~v~~~~  274 (402)
T 2aq5_A          196 RDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQE-LDTSSGVLLPF  274 (402)
T ss_dssp             TTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEE-CCCCSSCEEEE
T ss_pred             cCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEe-ccCCCceeEEE
Confidence            9999999999999999988 678776 8999999999999998   5 89999999988743222222 24667899999


Q ss_pred             EeCCCCEEEEEE-cCCeEEEEEcCCCc--EEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          774 FHPTFPSLLVIG-CYETLELWNMTENK--TLTL--SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       774 fspdg~~L~sgs-~dg~I~IwDl~~~~--~~~l--~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |+|++.+|++++ .|+.|++||+.+++  ...+  ..|...|.+++|+|++.++++  .|+.+++|+
T Consensus       275 ~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~~~~~~  339 (402)
T 2aq5_A          275 FDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEIARFYK  339 (402)
T ss_dssp             EETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEEEEEEE
T ss_pred             EcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--cceeEEEEE
Confidence            999999997665 69999999999887  3333  346699999999999988775  567899995

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=4.6e-31  Score=293.15  Aligned_cols=265  Identities=15%  Similarity=0.165  Sum_probs=217.1

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~  585 (835)
                      .++++|+.|+.|++|......                 ......+.+|.+.|.+++|+| ++.+|++++.|+.|++||+.
T Consensus        87 ~~l~s~~~dg~i~iwd~~~~~-----------------~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~  149 (383)
T 3ei3_B           87 TTVAVGSKGGDIILWDYDVQN-----------------KTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFS  149 (383)
T ss_dssp             TEEEEEEBTSCEEEEETTSTT-----------------CEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETT
T ss_pred             CEEEEEcCCCeEEEEeCCCcc-----------------cceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECC
Confidence            689999999999999543221                 112223357999999999999 78999999999999999998


Q ss_pred             CCeEEEEecc---CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC
Q 003271          586 SFTVKSTLEE---HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       586 t~~~i~~l~~---h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      + ..+..+..   |...|.+++|+|++.+|++++.|+.|++||+. + ..+..+..|...|.+++|+|++..++++|+.|
T Consensus       150 ~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~-~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d  226 (383)
T 3ei3_B          150 G-SVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G-HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVD  226 (383)
T ss_dssp             S-CEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S-CEEEEEECSSSCEEEEEECSSCTTEEEEEETT
T ss_pred             C-CceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C-CEEEEeccCCCcEEEEEECCCCCCEEEEEeCC
Confidence            6 44555543   44889999999999999999999999999995 3 35788889999999999999988788999999


Q ss_pred             CcEEEEECCC----CeeeeEee--cCceEEEEec-CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-------------
Q 003271          663 SEIRYWSINN----GSCAGVFK--SGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQGHK-------------  722 (835)
Q Consensus       663 g~I~iwDl~s----~~~~~~~~--~~i~~l~fsp-~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-------------  722 (835)
                      +.|++||+++    +.++..+.  ..+.+++|+| ++..|++++.|+.|++||+++++....+.+|.             
T Consensus       227 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (383)
T 3ei3_B          227 ATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKAT  306 (383)
T ss_dssp             SEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCE
T ss_pred             CEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEe
Confidence            9999999987    55555543  5599999999 99999999999999999999876655555432             


Q ss_pred             ----CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec--CCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          723 ----NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       723 ----~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~--~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                          ..+..++|+|++++  +++ |+.|+|||+.++   +++..+..  +...+..++|+|++++|++++ |+.|+|||+
T Consensus       307 ~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~---~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~  380 (383)
T 3ei3_B          307 WHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSG---GLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNR  380 (383)
T ss_dssp             ECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTC---CEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEEC
T ss_pred             ccCCCCceEEEecCCccc--ccCCCCeEEEEecCCC---ceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEec
Confidence                23444666666666  444 999999999988   67777776  456777889999999999997 899999998


Q ss_pred             CC
Q 003271          796 TE  797 (835)
Q Consensus       796 ~~  797 (835)
                      ++
T Consensus       381 ~~  382 (383)
T 3ei3_B          381 ED  382 (383)
T ss_dssp             C-
T ss_pred             CC
Confidence            75

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=5.7e-32  Score=294.29  Aligned_cols=244  Identities=19%  Similarity=0.328  Sum_probs=202.8

Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-eeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEE
Q 003271          592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWS  669 (835)
Q Consensus       592 ~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iwD  669 (835)
                      .+.+|.+.|++++|+|++++|++|+.|++|+|||+.++.. .+..+.+|...|.+++|+++ ...+|++|+.|++|++||
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd   87 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWR   87 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEEC
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEE
Confidence            4568999999999999999999999999999999987643 45778899999999999863 234788999999999999


Q ss_pred             CCCCe--eeeEee---cCceEEEEecC--CCEEEEEEcCCcEEEEECCCCe---EEEEEcCCCCCeEEEEEcCC------
Q 003271          670 INNGS--CAGVFK---SGATQMRFQPR--LGRILAAAIENYISILDVETQV---CRLKLQGHKNQVHSVCWNTS------  733 (835)
Q Consensus       670 l~s~~--~~~~~~---~~i~~l~fsp~--~~~ll~~s~dg~I~IwDl~t~~---~i~~l~~h~~~I~sl~fspd------  733 (835)
                      +++++  ....+.   ..+.+++|+|+  +..|++++.|+.|++||++...   ....+.+|...|.+++|+|+      
T Consensus        88 ~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~  167 (316)
T 3bg1_A           88 EENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSL  167 (316)
T ss_dssp             CSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC---
T ss_pred             CCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccc
Confidence            99874  344433   45899999998  6789999999999999998753   23455679999999999997      


Q ss_pred             -----------CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEEcCC
Q 003271          734 -----------GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       734 -----------g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg----~~L~sgs~dg~I~IwDl~~  797 (835)
                                 +.+|++++ |+.|++||++......++..+.+|...|.+++|+|++    .+|++++.|++|+|||+.+
T Consensus       168 ~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          168 IDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             ---CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence                       46888888 9999999997653334677788999999999999986    7899999999999999876


Q ss_pred             C---c--EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          798 N---K--TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       798 ~---~--~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .   .  ...+..|...|.+++|+|++.+||+++.||.|+||+
T Consensus       248 ~~~~~~~~~~~~~~~~~v~~v~~sp~g~~las~~~D~~v~lw~  290 (316)
T 3bg1_A          248 ASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWK  290 (316)
T ss_dssp             TTCCCCBCCEEEECSSCEEEEEECTTTCCEEEEESSSCEEEEE
T ss_pred             ccccchhhhhhhcCCCcEEEEEEcCCCCEEEEEcCCCeEEEEE
Confidence            2   1  124567899999999999999999999999999996

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.8e-30  Score=285.57  Aligned_cols=312  Identities=15%  Similarity=0.264  Sum_probs=224.8

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEE-----EecCCCCCEEEEEEeC-CCCEEEEEeCCCeE
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQ-----LIPASTSKVESCHFSP-DGKLLATGGHDKKA  579 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~-----~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I  579 (835)
                      ..++++|+.|+.|++|..........           .......     ...+|...|++++|+| ++.+|++++.||.|
T Consensus        56 ~~~l~~~~~dg~i~iw~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i  124 (408)
T 4a11_B           56 GRYMLSGGSDGVIVLYDLENSSRQSY-----------YTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTL  124 (408)
T ss_dssp             CCEEEEEETTSCEEEEECCCCSSSSC-----------EEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCcccce-----------EeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeE
Confidence            37899999999999996554422211           0111111     1246999999999999 78899999999999


Q ss_pred             EEEEcCCCeEEEEeccCCCCeEEEEECCC---CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEE
Q 003271          580 VLWCTESFTVKSTLEEHTQWITDVRFSPS---LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL  656 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspd---g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll  656 (835)
                      ++||+.+++.+..+. +...+.++.|++.   +.+|++++.|+.|++||+.++.. +..+..|...|.+++|+|++..++
T Consensus       125 ~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~~v~~~~~~~~~~~ll  202 (408)
T 4a11_B          125 KVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSC-SHILQGHRQEILAVSWSPRYDYIL  202 (408)
T ss_dssp             EEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCC-CEEECCCCSCEEEEEECSSCTTEE
T ss_pred             EEeeCCCCccceecc-CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcce-eeeecCCCCcEEEEEECCCCCcEE
Confidence            999999999988886 7788999999985   45999999999999999998764 778888999999999999998889


Q ss_pred             EEEeCCCcEEEEECCCCe-eeeE------------------eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE
Q 003271          657 CSCDNNSEIRYWSINNGS-CAGV------------------FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  717 (835)
Q Consensus       657 ~sgs~Dg~I~iwDl~s~~-~~~~------------------~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~  717 (835)
                      ++++.||.|++||++++. ++..                  ....+.+++|+|++.++++++.|+.|++||+++++....
T Consensus       203 ~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~  282 (408)
T 4a11_B          203 ATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLV  282 (408)
T ss_dssp             EEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCC
T ss_pred             EEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCcccee
Confidence            999999999999998765 2222                  234588999999999999999999999999998876544


Q ss_pred             EcCCC------CCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271          718 LQGHK------NQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE  791 (835)
Q Consensus       718 l~~h~------~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~  791 (835)
                      +..+.      .....+.....+.+++++.++.|++||+.++   ..+..+.+|...|.+++|+|++.+|++++.||.|+
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~---~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~  359 (408)
T 4a11_B          283 NYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSG---EQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL  359 (408)
T ss_dssp             CCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTC---CEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             ccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCC---cceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEE
Confidence            43221      1222233344556666666999999999988   78889999999999999999999999999999999


Q ss_pred             EEEcCCCcEEEeccCCCCeeEEEEeC-CCCEEEEEECCCcEEEeC
Q 003271          792 LWNMTENKTLTLSAHDKLVSSLAAST-VNGMVASASHDKCVKIWK  835 (835)
Q Consensus       792 IwDl~~~~~~~l~~h~~~V~~la~sp-dg~~LaSgs~DG~V~IWd  835 (835)
                      +||+.+++.+.........  ..+.+ ....+.+++.|+.|++|+
T Consensus       360 iw~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~W~  402 (408)
T 4a11_B          360 AWVPSLYEPVPDDDETTTK--SQLNPAFEDAWSSSDEEGGTSAWS  402 (408)
T ss_dssp             EEEECC---------------------------------------
T ss_pred             EEeCCCCCccCCCCceEec--cccccccceeecccCccCceeecC
Confidence            9999998876432222222  22233 334566778899999995

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=8.1e-32  Score=297.95  Aligned_cols=279  Identities=14%  Similarity=0.169  Sum_probs=217.0

Q ss_pred             CccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCe
Q 003271          499 PNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKK  578 (835)
Q Consensus       499 ~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~  578 (835)
                      ...+.....++++|+.|+.|++|.....                 .+..+..+.+|.+.|++++|+|++++|++++.|+.
T Consensus        16 ~~~~s~~g~~l~~~~~d~~i~iw~~~~~-----------------~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~   78 (377)
T 3dwl_C           16 EHAFNSQRTEFVTTTATNQVELYEQDGN-----------------GWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRN   78 (377)
T ss_dssp             CCEECSSSSEEECCCSSSCBCEEEEETT-----------------EEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSS
T ss_pred             EEEECCCCCEEEEecCCCEEEEEEccCC-----------------ceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCe
Confidence            3334445579999999999999943211                 22455677899999999999999999999999999


Q ss_pred             EEEEEcCCCe---EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEeec-CCCCeEEEEEcCCC
Q 003271          579 AVLWCTESFT---VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTG-HSTTVMSLDFHPSK  652 (835)
Q Consensus       579 I~VWd~~t~~---~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~~~-h~~~V~sl~fsp~g  652 (835)
                      |+|||+.+++   ....+..|...|.+++|+|++++|++++.|+.|++||+.++..  ....+.. |...|.+++|+|++
T Consensus        79 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  158 (377)
T 3dwl_C           79 AYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNN  158 (377)
T ss_dssp             EEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTS
T ss_pred             EEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCC
Confidence            9999999877   6777889999999999999999999999999999999998653  3566666 99999999999997


Q ss_pred             CcEEEEEeCCCcEEEEECCC------------------CeeeeEe--ecCceEEEEecCCCEEEEEEcCCcEEEEECCCC
Q 003271          653 EDLLCSCDNNSEIRYWSINN------------------GSCAGVF--KSGATQMRFQPRLGRILAAAIENYISILDVETQ  712 (835)
Q Consensus       653 ~~ll~sgs~Dg~I~iwDl~s------------------~~~~~~~--~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~  712 (835)
                      . +|++++.|+.|++||+..                  ++++..+  ...+.+++|+|++.+|++++.|+.|++||++++
T Consensus       159 ~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~  237 (377)
T 3dwl_C          159 V-LLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPSGNALAYAGHDSSVTIAYPSAP  237 (377)
T ss_dssp             S-EEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTTSSCEEEEETTTEEC-CEECST
T ss_pred             C-EEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCCCCEEEEEeCCCcEEEEECCCC
Confidence            6 777999999999999853                  3344333  234899999999999999999999999999988


Q ss_pred             eE----EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC---------------------------c-----
Q 003271          713 VC----RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK---------------------------G-----  756 (835)
Q Consensus       713 ~~----i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~---------------------------~-----  756 (835)
                      +.    +..+.+|...|.+++|+|++++|++++++.+.+|+......                           .     
T Consensus       238 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (377)
T 3dwl_C          238 EQPPRALITVKLSQLPLRSLLWANESAIVAAGYNYSPILLQGNESGWAHTRDLDAGTSKTSFTHTGNTGEGREEEGPVSF  317 (377)
T ss_dssp             TSCEEECCCEECSSSCEEEEEEEETTEEEEEESSSSEEEECCCC---CCSBCCCSCCCCCCBSSSSSBCCCCCC------
T ss_pred             CCcceeeEeecCCCCceEEEEEcCCCCEEEEEcCCcEEEEEeCCCceEEEeeeccccccccccccccccccccccccccc
Confidence            76    77888899999999999999999999966666887752210                           0     


Q ss_pred             ----ceEEE-------------eecCCCceEEEEEeCCCC----EEEEEEcCCeEEEEEc
Q 003271          757 ----ECIHE-------------LSCTGNKFHSCVFHPTFP----SLLVIGCYETLELWNM  795 (835)
Q Consensus       757 ----~~i~~-------------l~~~~~~V~sv~fspdg~----~L~sgs~dg~I~IwDl  795 (835)
                          ..+..             ...|...|.++.+.+...    .|++++.||.|+|||+
T Consensus       318 ~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl  377 (377)
T 3dwl_C          318 TALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL  377 (377)
T ss_dssp             -------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred             ccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence                00000             112888999999766543    5999999999999985

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.5e-31  Score=300.92  Aligned_cols=271  Identities=15%  Similarity=0.208  Sum_probs=217.2

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~  585 (835)
                      .+|++|+.|+.|++|......                 ...+..+.+|.+.|++|+|+| ++.+|++|+.||+|+|||++
T Consensus       133 ~~lasGs~dg~i~lWd~~~~~-----------------~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~  195 (435)
T 4e54_B          133 STVAVGSKGGDIMLWNFGIKD-----------------KPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFK  195 (435)
T ss_dssp             TCEEEEETTSCEEEECSSCCS-----------------CCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETT
T ss_pred             CEEEEEeCCCEEEEEECCCCC-----------------ceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeecc
Confidence            689999999999999443221                 122344678999999999998 78999999999999999998


Q ss_pred             CCeEEEEecc--CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271          586 SFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (835)
Q Consensus       586 t~~~i~~l~~--h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg  663 (835)
                      +.........  +...+.+++|+|++.+|++|+.||.|++||++..  .+..+.+|...|.+++|+|++..++++|+.|+
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~--~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~  273 (435)
T 4e54_B          196 GNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGK--ELWNLRMHKKKVTHVALNPCCDWFLATASVDQ  273 (435)
T ss_dssp             SCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSC--BCCCSBCCSSCEEEEEECTTCSSEEEEEETTS
T ss_pred             CCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcc--eeEEEecccceEEeeeecCCCceEEEEecCcc
Confidence            7665444433  3446789999999999999999999999999753  36778899999999999999998999999999


Q ss_pred             cEEEEECCCCeeeeEe------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC------CeEEEEEc
Q 003271          664 EIRYWSINNGSCAGVF------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN------QVHSVCWN  731 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~------~I~sl~fs  731 (835)
                      .|++||+++.+....+      ...+.+++|+|++.+|++++.|+.|+|||+.++.+...+..|..      .+..+.|+
T Consensus       274 ~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  353 (435)
T 4e54_B          274 TVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH  353 (435)
T ss_dssp             BCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred             eeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence            9999999887654332      34588999999999999999999999999999888777766543      23345677


Q ss_pred             CCCCEEEEEe-------------CCeEEEEEcCCCCCcceEEEe-ecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          732 TSGEYLASVS-------------DELVRVWSIGSGSKGECIHEL-SCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       732 pdg~~Lasgs-------------Dg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv-~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      +++.+++++.             ++.|++||..++   ..+..+ ..|...|.++ +|+|++.+|++++ |+.|+|||++
T Consensus       354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g---~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~  429 (435)
T 4e54_B          354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSG---KMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQ  429 (435)
T ss_dssp             SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSC---CEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC
T ss_pred             CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCC---cEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECC
Confidence            7777776654             247999999988   566655 4677778877 6999999887765 8899999999


Q ss_pred             CCcE
Q 003271          797 ENKT  800 (835)
Q Consensus       797 ~~~~  800 (835)
                      +++.
T Consensus       430 ~gk~  433 (435)
T 4e54_B          430 EART  433 (435)
T ss_dssp             ----
T ss_pred             cCee
Confidence            8765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=9.2e-30  Score=273.29  Aligned_cols=268  Identities=18%  Similarity=0.300  Sum_probs=226.6

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      ++|++| .|++|++|....+                 .......+.+|...|++++|+|++++||+|+.||+|+|||+++
T Consensus        37 ~~lAvg-~D~tV~iWd~~tg-----------------~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~   98 (318)
T 4ggc_A           37 NVLAVA-LDNSVYLWSASSG-----------------DILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQ   98 (318)
T ss_dssp             SEEEEE-ETTEEEEEETTTC-----------------CEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CEEEEE-eCCEEEEEECCCC-----------------CEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCC
Confidence            367776 5999999944322                 1122334568899999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      ++.+..+.+|...+.++.+  ++..|++++.++.+++|+.......+..+.+|...+.++.|.+++. ++++++.|+.|+
T Consensus        99 ~~~~~~~~~h~~~~~~~~~--~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~s~~~d~~i~  175 (318)
T 4ggc_A           99 QKRLRNMTSHSARVGSLSW--NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGR-HLASGGNDNLVN  175 (318)
T ss_dssp             TEEEEEEECCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             ceeEEEecCccceEEEeec--CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCC-EEEEEecCccee
Confidence            9999999999999887766  4569999999999999999988877888999999999999999976 677999999999


Q ss_pred             EEECCCCeeee-------EeecCceEEEEecCCCEEE---EEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          667 YWSINNGSCAG-------VFKSGATQMRFQPRLGRIL---AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       667 iwDl~s~~~~~-------~~~~~i~~l~fsp~~~~ll---~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                      +||+++++...       .....+..+.+++.+..++   +++.++.|++||........... +...+..++|++++..
T Consensus       176 iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~  254 (318)
T 4ggc_A          176 VWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSPHYKE  254 (318)
T ss_dssp             EEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEETTTTE
T ss_pred             EEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecccccc
Confidence            99998765321       1234588899999876554   33457899999999988776665 6778999999999998


Q ss_pred             EEEEe---CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          737 LASVS---DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       737 Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      +++++   |+.|+|||++++   +++.++.+|...|++++|+|++++|++++.|++|+|||+.+..
T Consensus       255 ~~~~sg~~d~~i~iwd~~~~---~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          255 LISGHGFAQNQLVIWKYPTM---AKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFELD  317 (318)
T ss_dssp             EEEEECTTTCCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCCC
T ss_pred             eEEEEEcCCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCCC
Confidence            87754   889999999988   7889999999999999999999999999999999999987653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.98  E-value=4.2e-30  Score=289.66  Aligned_cols=284  Identities=10%  Similarity=0.066  Sum_probs=241.8

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE-----EeccCCCCeEEEEECCCCCEEEEEECCC
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSPSLSRLATSSADR  619 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~-----~l~~h~~~V~sv~fspdg~~Latgs~Dg  619 (835)
                      +..+..+..+. .+.+++|+|++.++++++.|+.|++||+.+++.+.     .+.+|...|.+++|++++.++++++.|+
T Consensus       113 ~~~~~~~~~~~-~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~  191 (433)
T 3bws_A          113 HRFISRFKTGF-QPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQAN  191 (433)
T ss_dssp             EEEEEEEECSS-CBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGT
T ss_pred             ceEEEEEcCCC-CceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCC
Confidence            34455555554 46699999988888888889999999999999887     3457889999999999999999999999


Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEE
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILA  697 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~  697 (835)
                      .|++||+.+++. +..+..|...+.+++|+|+++.++++++.|+.|++||+++++.+..+..  .+..++|+|+++.+++
T Consensus       192 ~v~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~  270 (433)
T 3bws_A          192 AVHVFDLKTLAY-KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPRGLLLSKDGKELYI  270 (433)
T ss_dssp             EEEEEETTTCCE-EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCceE-EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCceEEEEcCCCCEEEE
Confidence            999999998664 6777789999999999999988888888899999999999988877653  3788999999999999


Q ss_pred             EEc--------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE-e-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271          698 AAI--------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV-S-DELVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       698 ~s~--------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg-s-Dg~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                      ++.        |+.|++||+.+++.+..+. |...+.+++|+|++++++++ + |+.|++||+.++   +.+..+. +..
T Consensus       271 ~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~  345 (433)
T 3bws_A          271 AQFSASNQESGGGRLGIYSMDKEKLIDTIG-PPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEK---KVQKSIP-VFD  345 (433)
T ss_dssp             EEEESCTTCSCCEEEEEEETTTTEEEEEEE-EEECEEEEEECSSTTEEEEEETTTTEEEEEETTTT---EEEEEEE-CSS
T ss_pred             EECCCCccccCCCeEEEEECCCCcEEeecc-CCCCcceEEECCCCCEEEEEecCCCEEEEEECCCC---cEEEEec-CCC
Confidence            884        7899999999998777664 56689999999999866554 5 999999999876   5555554 677


Q ss_pred             ceEEEEEeCCCCEEEEEEc---------------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC-CCcE
Q 003271          768 KFHSCVFHPTFPSLLVIGC---------------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH-DKCV  831 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~---------------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~-DG~V  831 (835)
                      .+.+++|+|++++|++++.               ||.|++||+.+++.+....+...+.+++|+|++++|++++. |+.|
T Consensus       346 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~d~~i  425 (433)
T 3bws_A          346 KPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPTGLDVSPDNRYLVISDFLDHQI  425 (433)
T ss_dssp             SEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEEEEEECTTSCEEEEEETTTTEE
T ss_pred             CCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCCCCCceEEEcCCCCEEEEEECCCCeE
Confidence            8999999999999998887               46999999999998865555678999999999999988875 9999


Q ss_pred             EEeC
Q 003271          832 KIWK  835 (835)
Q Consensus       832 ~IWd  835 (835)
                      +||+
T Consensus       426 ~v~~  429 (433)
T 3bws_A          426 RVYR  429 (433)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9996

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.98  E-value=1.9e-30  Score=285.10  Aligned_cols=248  Identities=20%  Similarity=0.367  Sum_probs=212.5

Q ss_pred             eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC-ceeEEeecCCCCeEEEEEcCCC-CcEEEEEeCCCcE
Q 003271          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-YSLRTFTGHSTTVMSLDFHPSK-EDLLCSCDNNSEI  665 (835)
Q Consensus       588 ~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-~~~~~~~~h~~~V~sl~fsp~g-~~ll~sgs~Dg~I  665 (835)
                      +.+..+.+|.+.|++++|+|++++|++|+.||.|+|||+.... ..+..+.+|...|.+++|+++. ..+|++++.||.|
T Consensus         2 ~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v   81 (379)
T 3jrp_A            2 SMVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKV   81 (379)
T ss_dssp             ---CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCE
T ss_pred             CccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEE
Confidence            4566788999999999999999999999999999999998433 2456788999999999998762 3478899999999


Q ss_pred             EEEECCCCe--eeeEee---cCceEEEEecC--CCEEEEEEcCCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcC----
Q 003271          666 RYWSINNGS--CAGVFK---SGATQMRFQPR--LGRILAAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNT----  732 (835)
Q Consensus       666 ~iwDl~s~~--~~~~~~---~~i~~l~fsp~--~~~ll~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~fsp----  732 (835)
                      ++||+.+++  .+..+.   ..+.+++|+|+  +..+++++.|+.|++||+++.  .....+..|...|.+++|+|    
T Consensus        82 ~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  161 (379)
T 3jrp_A           82 LIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIE  161 (379)
T ss_dssp             EEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC--
T ss_pred             EEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccc
Confidence            999999986  444443   45999999999  899999999999999999987  34556778999999999999    


Q ss_pred             ---------CCCEEEEEe-CCeEEEEEcCCCCCc-ceEEEeecCCCceEEEEEeCC---CCEEEEEEcCCeEEEEEcCCC
Q 003271          733 ---------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCTGNKFHSCVFHPT---FPSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       733 ---------dg~~Lasgs-Dg~I~IwDl~t~~~~-~~i~~l~~~~~~V~sv~fspd---g~~L~sgs~dg~I~IwDl~~~  798 (835)
                               ++.+|++++ |+.|++||++++... ..+..+..|...|.+++|+|+   +.+|++++.|+.|+|||+.++
T Consensus       162 ~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          162 EDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             --------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             ccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence                     699999999 999999999876432 355678889999999999999   899999999999999999987


Q ss_pred             c----EE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          799 K----TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       799 ~----~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .    ..  ....|...|++++|+|++++|++++.||.|+|||
T Consensus       242 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~  284 (379)
T 3jrp_A          242 QGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  284 (379)
T ss_dssp             TSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEE
T ss_pred             CccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEe
Confidence            4    22  2334889999999999999999999999999996

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=5e-30  Score=283.90  Aligned_cols=275  Identities=14%  Similarity=0.157  Sum_probs=217.0

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEECCCeEEEEe
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWD  625 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWD  625 (835)
                      .+..+.+|.+.|+|++|+|||++|++|+.|+ ++|||+++++.+.....  ..+..++|.++++.+ ++++.|++|+|||
T Consensus        11 ~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~d~~v~iWd   87 (355)
T 3vu4_A           11 PIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEM--RHLSKVRMLHRTNYVAFVTGVKEVVHIWD   87 (355)
T ss_dssp             --------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEEC--SCCCEEEECTTSSEEEEECSSTTEEEEEE
T ss_pred             CccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeec--CCeEEEEEcCCCCEEEEEECCccEEEEEE
Confidence            3445688999999999999999999998764 78999998877765433  258888999988877 5677789999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eeeeEeecCceEEEEecCCCEEEE--EEcCC
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCAGVFKSGATQMRFQPRLGRILA--AAIEN  702 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~~~~~~~i~~l~fsp~~~~ll~--~s~dg  702 (835)
                      +.+++. +..+. |...|.++.|+++.  ++ ++. |+.|++||+.++ +.+..+......+++++  ..+++  ++.+|
T Consensus        88 ~~~~~~-~~~~~-~~~~v~~v~~~~~~--~~-~~~-~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~--~~la~~sg~~~g  159 (355)
T 3vu4_A           88 DVKKQD-VSRIK-VDAPVKDLFLSREF--IV-VSY-GDVISVFKFGNPWKRITDDIRFGGVCEFSN--GLLVYSNEFNLG  159 (355)
T ss_dssp             TTTTEE-EEEEE-CSSCEEEEEECSSE--EE-EEE-TTEEEEEESSTTCCBSSCCEEEEEEEEEET--TEEEEEESSCTT
T ss_pred             CCCCcE-EEEEE-CCCceEEEEEcCCE--EE-EEE-cCEEEEEECCCCceeeEEeccCCceEEEEc--cEEEEeCCCcCc
Confidence            998764 55554 67799999999762  33 333 789999999988 76666655555566777  56666  46789


Q ss_pred             cEEEEECCCCe----------------EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCe-EEEEEcCCCCCcceEEEee-
Q 003271          703 YISILDVETQV----------------CRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL-VRVWSIGSGSKGECIHELS-  763 (835)
Q Consensus       703 ~I~IwDl~t~~----------------~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~-I~IwDl~t~~~~~~i~~l~-  763 (835)
                      .|++||++++.                ++..+.+|...|.+++|+|+|.+|++++ |++ |+|||++++   .++..+. 
T Consensus       160 ~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~---~~~~~~~~  236 (355)
T 3vu4_A          160 QIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDG---VLVREFRR  236 (355)
T ss_dssp             CEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTC---CEEEEEEC
T ss_pred             EEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEc
Confidence            99999999865                2677889999999999999999999999 998 999999988   7888887 


Q ss_pred             c-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE---Ee--------------------c-cCCCCeeEEEEeCC
Q 003271          764 C-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL---TL--------------------S-AHDKLVSSLAASTV  818 (835)
Q Consensus       764 ~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~---~l--------------------~-~h~~~V~~la~spd  818 (835)
                      + |...|.+++|+|++.+|++++.|+.|+|||+......   .+                    . .+......++|+++
T Consensus       237 g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d  316 (355)
T 3vu4_A          237 GLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISE  316 (355)
T ss_dssp             TTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCCTTCCCCEEEESSS
T ss_pred             CCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccCCCCCceEEEEeCC
Confidence            4 8999999999999999999999999999999765321   11                    0 11223477999999


Q ss_pred             CCEEEEEECCCcEEEeC
Q 003271          819 NGMVASASHDKCVKIWK  835 (835)
Q Consensus       819 g~~LaSgs~DG~V~IWd  835 (835)
                      +++|++++.||.+++|+
T Consensus       317 ~~~l~~~~~dg~~~~~~  333 (355)
T 3vu4_A          317 SSLVVVWPHTRMIETFK  333 (355)
T ss_dssp             SEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEE
Confidence            99999999999999985

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=5e-30  Score=291.03  Aligned_cols=279  Identities=18%  Similarity=0.370  Sum_probs=225.2

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      +.++++|+.|+.|++|....                   ...+..+.+|.+.|++++|  ++++|++|+.||.|+|||+.
T Consensus       143 ~~~l~~g~~dg~i~iwd~~~-------------------~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~  201 (435)
T 1p22_A          143 DQKIVSGLRDNTIKIWDKNT-------------------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN  201 (435)
T ss_dssp             SSEEEEEESSSCEEEEESSS-------------------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             CCEEEEEeCCCeEEEEeCCC-------------------CeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECC
Confidence            47899999999999994322                   2345678899999999999  78899999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce--eEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS--LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~--~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg  663 (835)
                      +++.+..+.+|...|.+++|++  .+|++|+.||.|++||+.++...  ...+.+|...|.+++|.  + .++++|+.||
T Consensus       202 ~~~~~~~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~-~~l~s~~~dg  276 (435)
T 1p22_A          202 TGEMLNTLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D-KYIVSASGDR  276 (435)
T ss_dssp             SCCEEEEECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T-TEEEEEETTS
T ss_pred             CCcEEEEEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEeC--C-CEEEEEeCCC
Confidence            9999999999999999999974  59999999999999999986642  26778899999999994  3 4788999999


Q ss_pred             cEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271          664 EIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg  740 (835)
                      .|++||+++++++..+..+   +.++.+  ++..+++++.|+.|++||+++++++..+.+|...|.+++|  ++.+|+++
T Consensus       277 ~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--~~~~l~sg  352 (435)
T 1p22_A          277 TIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSG  352 (435)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--CSSEEEEE
T ss_pred             eEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--cCCEEEEE
Confidence            9999999999998887643   666767  4689999999999999999999999999999999999998  78899999


Q ss_pred             e-CCeEEEEEcCCCCC------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEE
Q 003271          741 S-DELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL  813 (835)
Q Consensus       741 s-Dg~I~IwDl~t~~~------~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~l  813 (835)
                      + ||.|++||+.++..      ..++..+..|...|.+++|  ++.+|++++.||.|++||+.+............+.++
T Consensus       353 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~~~~~  430 (435)
T 1p22_A          353 AYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLNDPAAQAEPPRSPSRTY  430 (435)
T ss_dssp             ETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC-------------------
T ss_pred             eCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCCCCcccCCCCCCccce
Confidence            9 99999999976531      1278889999999999999  7788999999999999999887766444444455555


Q ss_pred             EEe
Q 003271          814 AAS  816 (835)
Q Consensus       814 a~s  816 (835)
                      .|.
T Consensus       431 ~~~  433 (435)
T 1p22_A          431 TYI  433 (435)
T ss_dssp             ---
T ss_pred             eee
Confidence            554

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=9.2e-30  Score=287.49  Aligned_cols=286  Identities=15%  Similarity=0.271  Sum_probs=227.4

Q ss_pred             CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-----
Q 003271          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-----  555 (835)
Q Consensus       481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-----  555 (835)
                      ....+.|++++               .++++|+.|+.|++|........        .......+.....+.+|.     
T Consensus        30 ~V~~v~~s~~g---------------~~la~g~~dg~v~iw~~~~~~~~--------~~~~~~~~~~~~~~~~h~~~~~~   86 (447)
T 3dw8_B           30 IISTVEFNHSG---------------ELLATGDKGGRVVIFQQEQENKI--------QSHSRGEYNVYSTFQSHEPEFDY   86 (447)
T ss_dssp             SEEEEEECSSS---------------SEEEEEETTSEEEEEEECC-------------CCCCCCEEEEEEEECCCCEEEG
T ss_pred             cEEEEEECCCC---------------CEEEEEcCCCeEEEEEecCCCCC--------CcccccceeEecccccccccccc
Confidence            45566666654               78999999999999965543211        011223455677888998     


Q ss_pred             -------CCEEEEEEeCCC--CEEEEEeCCCeEEEEEcCCCeEE------------------------------------
Q 003271          556 -------SKVESCHFSPDG--KLLATGGHDKKAVLWCTESFTVK------------------------------------  590 (835)
Q Consensus       556 -------~~V~sl~fSpdg--~~Lasgs~Dg~I~VWd~~t~~~i------------------------------------  590 (835)
                             +.|++++|+|++  .+|++++.|+.|+|||+.++...                                    
T Consensus        87 ~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  166 (447)
T 3dw8_B           87 LKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEA  166 (447)
T ss_dssp             GGTEEECCCCCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEE
T ss_pred             cccccccCceEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeec
Confidence                   889999999998  79999999999999998764432                                    


Q ss_pred             ---EE-eccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE-------EeecCCCCeEEEEEcCCCCcEEEEE
Q 003271          591 ---ST-LEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR-------TFTGHSTTVMSLDFHPSKEDLLCSC  659 (835)
Q Consensus       591 ---~~-l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~-------~~~~h~~~V~sl~fsp~g~~ll~sg  659 (835)
                         .. ..+|...|++++|+|++++|++| .|+.|+|||+.+....+.       .+.+|...|.+++|+|++..+|++|
T Consensus       167 ~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~  245 (447)
T 3dw8_B          167 SPRRIFANAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYS  245 (447)
T ss_dssp             EEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEE
T ss_pred             cceEEeccCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEE
Confidence               12 36899999999999999999998 899999999985443343       3568999999999999985688899


Q ss_pred             eCCCcEEEEECCCCee----eeEeec---------------CceEEEEecCCCEEEEEEcCCcEEEEECCC-CeEEEEEc
Q 003271          660 DNNSEIRYWSINNGSC----AGVFKS---------------GATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQ  719 (835)
Q Consensus       660 s~Dg~I~iwDl~s~~~----~~~~~~---------------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t-~~~i~~l~  719 (835)
                      +.||.|++||+++++.    +..+..               .+.+++|+|++.+|++++. +.|++||+++ ++++..+.
T Consensus       246 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~  324 (447)
T 3dw8_B          246 SSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQ  324 (447)
T ss_dssp             ETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEE
T ss_pred             eCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceee
Confidence            9999999999998876    455543               6889999999999999988 9999999997 78888888


Q ss_pred             CCCCC---------------eEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--------------------
Q 003271          720 GHKNQ---------------VHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--------------------  763 (835)
Q Consensus       720 ~h~~~---------------I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--------------------  763 (835)
                      +|...               +..++|+|++.+|++++ |+.|+|||+.++.   .+ .+.                    
T Consensus       325 ~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~  400 (447)
T 3dw8_B          325 VHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKR---DI-TLEASRENNKPRTVLKPRKVCAS  400 (447)
T ss_dssp             SCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCC---EE-EEECCSTTCCTTCBCCCCCEECS
T ss_pred             ccccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCc---ce-eeeecccccccccccCCcccccc
Confidence            77532               33499999999999999 9999999998873   22 211                    


Q ss_pred             -------------cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          764 -------------CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       764 -------------~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                                   .....|..++|+|++.+|++++.++ +++|..+
T Consensus       401 ~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          401 GKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             SCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             CCcccccccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                         2235688999999999888887765 8888643

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.97  E-value=8e-31  Score=296.54  Aligned_cols=262  Identities=15%  Similarity=0.212  Sum_probs=216.8

Q ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-ccCCCCeEEEEECC-CCCEEEEEECCCeEEEEecCC---CCce-eEE
Q 003271          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EEHTQWITDVRFSP-SLSRLATSSADRTVRVWDTEN---PDYS-LRT  635 (835)
Q Consensus       562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~h~~~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t---~~~~-~~~  635 (835)
                      .|+|++..+++++      +|+ .+++.+..+ .+|.+.|++++|+| ++.+|++|+.||+|+|||+.+   +... ...
T Consensus        34 ~f~~~~~~~~~~~------~w~-~~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~  106 (437)
T 3gre_A           34 EFGPIQEIVRSPN------MGN-LRGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSL  106 (437)
T ss_dssp             GGCCCCCCCCCCC------GGG-CCCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSE
T ss_pred             hcCCccccccccc------ccc-ccceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceee
Confidence            3677787777654      487 456888888 89999999999999 999999999999999999876   3311 122


Q ss_pred             eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEee---------------cCceEEE--EecCCCEE
Q 003271          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK---------------SGATQMR--FQPRLGRI  695 (835)
Q Consensus       636 ~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~---s~~~~~~~~---------------~~i~~l~--fsp~~~~l  695 (835)
                      ...|...|.+++|+|++. +|++++.||.|++||+.   +++....+.               ..+.++.  +++++..+
T Consensus       107 ~~~h~~~v~~~~~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l  185 (437)
T 3gre_A          107 TYDCSSTVTQITMIPNFD-AFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLL  185 (437)
T ss_dssp             EEECSSCEEEEEECTTSS-EEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEE
T ss_pred             eccCCCCEEEEEEeCCCC-EEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEE
Confidence            225999999999999866 77799999999999995   554444332               1133444  55778999


Q ss_pred             EEEEcCCcEEEEECCCCeEEEEEcC--CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-cCCCceEE
Q 003271          696 LAAAIENYISILDVETQVCRLKLQG--HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHS  771 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t~~~i~~l~~--h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-~~~~~V~s  771 (835)
                      ++++.|+.|++||+++++++..+.+  |...|.+++|+|++.+|++++ |+.|++||++++   .++..+. .|...|.+
T Consensus       186 ~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~~v~~  262 (437)
T 3gre_A          186 VALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFN---VLIRSWSFGDHAPITH  262 (437)
T ss_dssp             EEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEEBCTTCEEEEE
T ss_pred             EEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCc---cEEEEEecCCCCceEE
Confidence            9999999999999999999999988  889999999999999999999 999999999987   7777775 67778999


Q ss_pred             EEEeC----CCCEEEEEEcCCeEEEEEcCCCcEE-Eecc--------------------------CCCCeeEEEEeCCCC
Q 003271          772 CVFHP----TFPSLLVIGCYETLELWNMTENKTL-TLSA--------------------------HDKLVSSLAASTVNG  820 (835)
Q Consensus       772 v~fsp----dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~--------------------------h~~~V~~la~spdg~  820 (835)
                      ++|+|    ++.+|++++.|+.|+|||+.+++++ .+.+                          |...|++++|+ +++
T Consensus       263 ~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~  341 (437)
T 3gre_A          263 VEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDK  341 (437)
T ss_dssp             EEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTE
T ss_pred             EEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-Cce
Confidence            96664    5779999999999999999998866 3322                          66779999999 788


Q ss_pred             EEEEEECCCcEEEeC
Q 003271          821 MVASASHDKCVKIWK  835 (835)
Q Consensus       821 ~LaSgs~DG~V~IWd  835 (835)
                      +|++|+.||.|++||
T Consensus       342 ~l~s~~~d~~i~~wd  356 (437)
T 3gre_A          342 ILLTDEATSSIVMFS  356 (437)
T ss_dssp             EEEEEGGGTEEEEEE
T ss_pred             EEEecCCCCeEEEEE
Confidence            999999999999996

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=4.8e-29  Score=284.42  Aligned_cols=270  Identities=16%  Similarity=0.183  Sum_probs=221.1

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe---EEEEecc-------------------------------------
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFT---VKSTLEE-------------------------------------  595 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~---~i~~l~~-------------------------------------  595 (835)
                      .+|.|++|++||++|+++ .++.|++||+.+++   .+..+..                                     
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            468999999999977666 47899999999888   5555543                                     


Q ss_pred             -----------------CCCCeEEEEECCCCCEE-EEEECCCeEEEEecC--CCCceeEEee--cCCCCeEEEEEcCCCC
Q 003271          596 -----------------HTQWITDVRFSPSLSRL-ATSSADRTVRVWDTE--NPDYSLRTFT--GHSTTVMSLDFHPSKE  653 (835)
Q Consensus       596 -----------------h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~--t~~~~~~~~~--~h~~~V~sl~fsp~g~  653 (835)
                                       |.+.|++++|+|++++| ++++.||.|+|||+.  ++.. +..+.  .|...|.+++|+|++.
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~-~~~~~~~~~~~~v~~~~~sp~~~  162 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNV-LKLRKRFCFSKRPNAISIAEDDT  162 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSC-EEEEEEEECSSCEEEEEECTTSS
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCce-eeeeecccCCCCceEEEEcCCCC
Confidence                             33479999999999996 889999999999998  6553 55554  6778999999999976


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeee----E---eecCceEEEEecC---CCEEEEEEcCCcEEEEECCCCeEEEE-EcCCC
Q 003271          654 DLLCSCDNNSEIRYWSINNGSCAG----V---FKSGATQMRFQPR---LGRILAAAIENYISILDVETQVCRLK-LQGHK  722 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s~~~~~----~---~~~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t~~~i~~-l~~h~  722 (835)
                       +|++++.+|.|++|++.+++...    .   ....+.+++|+|+   +.+|++++.|+.|++||++++.++.. +.+|.
T Consensus       163 -~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~  241 (450)
T 2vdu_B          163 -TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHK  241 (450)
T ss_dssp             -EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCS
T ss_pred             -EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCC
Confidence             66688889999999998876543    3   3356899999999   88999999999999999999888777 55899


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-------------------------cCCCceEEEEEeC
Q 003271          723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------------------------CTGNKFHSCVFHP  776 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-------------------------~~~~~V~sv~fsp  776 (835)
                      ..|.+++|+ ++.+|++++ |+.|+|||+.++   .++..+.                         .....|..++|+|
T Consensus       242 ~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~  317 (450)
T 2vdu_B          242 HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTG---KNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSK  317 (450)
T ss_dssp             SCEEEEEEC-STTEEEEEESSSEEEEEETTTC---CEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECS
T ss_pred             CceEEEEEC-CCCEEEEEeCCCeEEEEECCCC---cEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeC
Confidence            999999999 999999999 999999999988   5555554                         2345789999999


Q ss_pred             CCCEEEEEE-cCCeEEEEEc--CCC---cEE-EeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEe
Q 003271          777 TFPSLLVIG-CYETLELWNM--TEN---KTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIW  834 (835)
Q Consensus       777 dg~~L~sgs-~dg~I~IwDl--~~~---~~~-~l~~h~~~V~~la~spdg~~LaSgs~-------DG~V~IW  834 (835)
                      ++++|++++ .++.|+||++  .++   +.+ .+..| ..|.+++|+|++ ++++++.       +..|.||
T Consensus       318 ~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~  387 (450)
T 2vdu_B          318 NLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFI  387 (450)
T ss_dssp             SSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEE
T ss_pred             CCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEE
Confidence            999999999 8999999999  554   444 45566 889999999954 5555433       4557777

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.97  E-value=5.9e-30  Score=286.93  Aligned_cols=275  Identities=16%  Similarity=0.197  Sum_probs=223.8

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC-CCCEEEEEeCCCeEEEEEcC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP-DGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~  585 (835)
                      .++++|+.|+.|.+|......               .....+..+.+|.+.|++++|+| ++++|++|+.||.|+|||+.
T Consensus        48 ~~~~~~~~~g~i~v~~~~~~~---------------~~~~~~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~  112 (402)
T 2aq5_A           48 ALICEASGGGAFLVLPLGKTG---------------RVDKNVPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIP  112 (402)
T ss_dssp             EEEBCCSSSCCEEEEETTCCE---------------ECCTTCCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECC
T ss_pred             EEEEEEcCCCEEEEEECccCC---------------CCCCCCceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEcc
Confidence            355568899999999542221               00112345679999999999999 99999999999999999999


Q ss_pred             CC-------eEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEe--ecCCCCeEEEEEcCCCCcE
Q 003271          586 SF-------TVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       586 t~-------~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~--~~h~~~V~sl~fsp~g~~l  655 (835)
                      ++       +.+..+.+|...|.+++|+|++ .+|++++.|+.|+|||+.+++. +..+  ..|...|.+++|+|++. +
T Consensus       113 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~-~  190 (402)
T 2aq5_A          113 DGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAA-VLTLGPDVHPDTIYSVDWSRDGA-L  190 (402)
T ss_dssp             TTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEE-EEEECTTTCCSCEEEEEECTTSS-C
T ss_pred             CCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCc-cEEEecCCCCCceEEEEECCCCC-E
Confidence            87       5678888999999999999998 6999999999999999998764 6666  78999999999999876 5


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEe-ec----CceEEEEecCCCEEEEE---EcCCcEEEEECCCCeE-EEEE-cCCCCCe
Q 003271          656 LCSCDNNSEIRYWSINNGSCAGVF-KS----GATQMRFQPRLGRILAA---AIENYISILDVETQVC-RLKL-QGHKNQV  725 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~~~~~~~-~~----~i~~l~fsp~~~~ll~~---s~dg~I~IwDl~t~~~-i~~l-~~h~~~I  725 (835)
                      |++++.|+.|++||+++++.+..+ ..    .+..+.|+|++..++++   +.|+.|++||+++... +... ..|...|
T Consensus       191 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v  270 (402)
T 2aq5_A          191 ICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGV  270 (402)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSC
T ss_pred             EEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCce
Confidence            668889999999999999988877 32    27889999998888888   5899999999998643 2222 2477889


Q ss_pred             EEEEEcCCCCEEEE-Ee-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          726 HSVCWNTSGEYLAS-VS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       726 ~sl~fspdg~~Las-gs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      .+++|+|++.+|++ ++ |+.|++||+.++.. ...+..+. +...|.+++|+|++.++++  .++.+++|++.++.+.
T Consensus       271 ~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~-~~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~~  346 (402)
T 2aq5_A          271 LLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFS-SKESQRGMGYMPKRGLEVN--KCEIARFYKLHERKCE  346 (402)
T ss_dssp             EEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEEC-CSSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEEE
T ss_pred             eEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccc-cCCcccceEEeccccccee--cceeEEEEEcCCCcEE
Confidence            99999999999865 54 99999999998742 22333333 5689999999999987654  5679999999887654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=2e-29  Score=286.26  Aligned_cols=243  Identities=19%  Similarity=0.326  Sum_probs=208.8

Q ss_pred             EEeccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCC---------CceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271          591 STLEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENP---------DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       591 ~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~---------~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                      .....|.+.|++++|+|+ +.+|++++.||.|+|||+.+.         ...+..+.+|...|.+++|+|++..+|++|+
T Consensus       122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~  201 (430)
T 2xyi_A          122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSAS  201 (430)
T ss_dssp             EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEEC
T ss_pred             EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEe
Confidence            444579999999999997 789999999999999999862         2346788899999999999999887888999


Q ss_pred             CCCcEEEEECCCCee-------eeEe---ecCceEEEEec-CCCEEEEEEcCCcEEEEECCCC---eEEEEEcCCCCCeE
Q 003271          661 NNSEIRYWSINNGSC-------AGVF---KSGATQMRFQP-RLGRILAAAIENYISILDVETQ---VCRLKLQGHKNQVH  726 (835)
Q Consensus       661 ~Dg~I~iwDl~s~~~-------~~~~---~~~i~~l~fsp-~~~~ll~~s~dg~I~IwDl~t~---~~i~~l~~h~~~I~  726 (835)
                      .||.|++||+..+..       ...+   ...+.+++|+| ++..|++++.|+.|++||+++.   ..+..+..|...|+
T Consensus       202 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~  281 (430)
T 2xyi_A          202 DDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN  281 (430)
T ss_dssp             TTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE
T ss_pred             CCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE
Confidence            999999999987322       2222   34589999999 6678889999999999999987   57777888999999


Q ss_pred             EEEEcCCCC-EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCC------
Q 003271          727 SVCWNTSGE-YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTE------  797 (835)
Q Consensus       727 sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~------  797 (835)
                      +++|+|++. +|++++ |+.|++||+++..  ..+..+..|...|.+++|+|+++ +|++++.|+.|+|||+..      
T Consensus       282 ~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~--~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~  359 (430)
T 2xyi_A          282 CLSFNPYSEFILATGSADKTVALWDLRNLK--LKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQS  359 (430)
T ss_dssp             EEEECSSCTTEEEEEETTSEEEEEETTCTT--SCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCC
T ss_pred             EEEeCCCCCCEEEEEeCCCeEEEEeCCCCC--CCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccC
Confidence            999999987 677888 9999999999743  56778888999999999999995 688999999999999987      


Q ss_pred             --------CcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEeC
Q 003271          798 --------NKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIWK  835 (835)
Q Consensus       798 --------~~~~-~l~~h~~~V~~la~spdg~-~LaSgs~DG~V~IWd  835 (835)
                              ..++ ...+|...|++++|+|++. +|++++.||.|+||+
T Consensus       360 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~  407 (430)
T 2xyi_A          360 TEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQ  407 (430)
T ss_dssp             HHHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEE
T ss_pred             ccccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeE
Confidence                    2333 6778999999999999999 999999999999996

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=1.9e-29  Score=280.55  Aligned_cols=275  Identities=12%  Similarity=0.137  Sum_probs=209.3

Q ss_pred             CcEEEeccCCC-------CEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe----
Q 003271          506 DRFVDDGSLDD-------NVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG----  574 (835)
Q Consensus       506 ~~~l~tGs~D~-------~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs----  574 (835)
                      ..+|++|+.|.       .|++|..........         ..........+.+|.+.|.|++++  +..+++|.    
T Consensus        26 g~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~---------~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~   94 (365)
T 4h5i_A           26 DTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEK---------EQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENS   94 (365)
T ss_dssp             TEEEEEEECCSSSSSCCEEEEEEEECTTSSSHH---------HHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCH
T ss_pred             CcEEEEECCCccccCCCCEEEEEEEcCCCccee---------eeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCc
Confidence            37888887544       488995433321100         011112234578999999998876  45676654    


Q ss_pred             -------CCCeEEEEEcCCCeE----EEEe-----ccCCCCeEEEEECCCCCEEEEEE--CCCeEEEEecCCCCceeEEe
Q 003271          575 -------HDKKAVLWCTESFTV----KSTL-----EEHTQWITDVRFSPSLSRLATSS--ADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       575 -------~Dg~I~VWd~~t~~~----i~~l-----~~h~~~V~sv~fspdg~~Latgs--~Dg~I~IWDl~t~~~~~~~~  636 (835)
                             .|+.|++|++.+...    ....     ..+...+.+|+|+|||++|++++  .|++|+|||+.+... +..+
T Consensus        95 ~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~-~~~~  173 (365)
T 4h5i_A           95 TKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTE-KFEI  173 (365)
T ss_dssp             HHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEE-EEEE
T ss_pred             cEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcE-EEEe
Confidence                   477899998765421    1221     23456799999999999987655  689999999998764 4444


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCC----cEEEE
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIEN----YISIL  707 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg----~I~Iw  707 (835)
                       .|...|.+++|+|++. ++++++ ++.+++|+..++..+....     ..+.+++|+|++..+++++.++    .+++|
T Consensus       174 -~~~~~V~~v~fspdg~-~l~s~s-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~  250 (365)
T 4h5i_A          174 -ETRGEVKDLHFSTDGK-VVAYIT-GSSLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKI  250 (365)
T ss_dssp             -ECSSCCCEEEECTTSS-EEEEEC-SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEE
T ss_pred             -CCCCceEEEEEccCCc-eEEecc-ceeEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeec
Confidence             4778899999999987 566776 5567777777776654322     3388999999999999999887    58889


Q ss_pred             ECCCCeE----EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEE
Q 003271          708 DVETQVC----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       708 Dl~t~~~----i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L  781 (835)
                      |+.....    ...+.+|...|++++|+|+|++|++|+ |++|+|||+.++   +++..+ .+|...|++++|+|++++|
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~---~~~~~~~~gH~~~V~~v~fSpdg~~l  327 (365)
T 4h5i_A          251 SIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNSIALVKLKDL---SMSKIFKQAHSFAITEVTISPDSTYV  327 (365)
T ss_dssp             EEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTT---EEEEEETTSSSSCEEEEEECTTSCEE
T ss_pred             ccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCC---cEEEEecCcccCCEEEEEECCCCCEE
Confidence            9876643    346778999999999999999999999 999999999987   777774 7899999999999999999


Q ss_pred             EEEEcCCeEEEEEcCCC
Q 003271          782 LVIGCYETLELWNMTEN  798 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~  798 (835)
                      ++++.|++|+|||+..+
T Consensus       328 aS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          328 ASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSEEEEEECCTT
T ss_pred             EEEeCCCeEEEEEcCCC
Confidence            99999999999999654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.9e-30  Score=283.54  Aligned_cols=263  Identities=9%  Similarity=0.024  Sum_probs=210.8

Q ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC---------CCCce
Q 003271          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---------NPDYS  632 (835)
Q Consensus       562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---------t~~~~  632 (835)
                      .+.+++.+|++|+.||.|++||+.+++.+..+.  ...|.++.|+|+   +++++.|++|++|+..         +....
T Consensus        43 ~~~~d~~~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~  117 (343)
T 3lrv_A           43 SMYYDKWVCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVL  117 (343)
T ss_dssp             SSSEEEEEEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEE
T ss_pred             hhcCCCCEEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCccee
Confidence            344578899999999999999999999888876  567888899988   9999999999999765         33322


Q ss_pred             eEEeecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEE
Q 003271          633 LRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                      ......|...|.+++|+|  +++ ++++++.||.|++||+++++++....    ..+.+++|+|++..+++|+.|+.|++
T Consensus       118 ~~~~~~~~~~v~~~~~~~~~~~~-~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~i  196 (343)
T 3lrv_A          118 REIEVDSANEIIYMYGHNEVNTE-YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDV  196 (343)
T ss_dssp             EEEECCCSSCEEEEECCC---CC-EEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEE
T ss_pred             EEeecCCCCCEEEEEcCCCCCCC-EEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEE
Confidence            233446778999999999  865 77799999999999999998876553    34889999999999999999999999


Q ss_pred             EECCCCeEE-EEEcC-CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCce--EEEEEeCCCCEEE
Q 003271          707 LDVETQVCR-LKLQG-HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLL  782 (835)
Q Consensus       707 wDl~t~~~i-~~l~~-h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V--~sv~fspdg~~L~  782 (835)
                      ||+++++.+ ..+.. |...|.+++|+|++.+|++++|+.|++||+++......+..+..+...+  .+++|+|++++|+
T Consensus       197 wd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~  276 (343)
T 3lrv_A          197 YNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMI  276 (343)
T ss_dssp             EESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEE
T ss_pred             EECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEE
Confidence            999999877 77887 9999999999999999999997799999999874433333322233333  4699999999999


Q ss_pred             EEEc-CCeEEEEEcCCCcEE-EeccCCCCeeEEEEeC---CCCEEEEEECCCcEEEe
Q 003271          783 VIGC-YETLELWNMTENKTL-TLSAHDKLVSSLAAST---VNGMVASASHDKCVKIW  834 (835)
Q Consensus       783 sgs~-dg~I~IwDl~~~~~~-~l~~h~~~V~~la~sp---dg~~LaSgs~DG~V~IW  834 (835)
                      +++. ++.|+||++...... ..    ..+..++|.+   +...|++++.||.+.++
T Consensus       277 ~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~  329 (343)
T 3lrv_A          277 AYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAI  329 (343)
T ss_dssp             EEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEE
T ss_pred             EecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEE
Confidence            9998 999999999665432 22    5567778887   77788888888888775

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=7.3e-29  Score=269.46  Aligned_cols=260  Identities=13%  Similarity=0.129  Sum_probs=220.4

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEc-
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCT-  584 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~-  584 (835)
                      .++++|+.|+.|++|.....                ........+.+|...|++++|+|+++ +|++|+.||.|++||+ 
T Consensus        24 ~~l~~~~~d~~v~iw~~~~~----------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A           24 SLLLITSWDGSLTVYKFDIQ----------------AKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             TEEEEEETTSEEEEEEEETT----------------TTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CEEEEEcCCCeEEEEEeCCC----------------CccccceeeeecCCceEEEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            68899999999999944322                11122344558999999999999999 9999999999999999 


Q ss_pred             CCCeEEEEecc--CCCCeEEEEECCCCCEEEEEECCCeEEEEecCC---------CCceeEEeecCCCCeEEEEEcCCCC
Q 003271          585 ESFTVKSTLEE--HTQWITDVRFSPSLSRLATSSADRTVRVWDTEN---------PDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       585 ~t~~~i~~l~~--h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t---------~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      .+++. ..+.+  |...|.+++|+| +.+|++++.|+.|++||+.+         ... +..+. |...|.+++|++++ 
T Consensus        88 ~~~~~-~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~-~~~~v~~~~~~~~~-  162 (342)
T 1yfq_A           88 GSPSF-QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLN-SNNTK-VKNKIFTMDTNSSR-  162 (342)
T ss_dssp             SSSSE-EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESC-SSSSS-SCCCEEEEEECSSE-
T ss_pred             cCCce-EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCe-eeEEe-eCCceEEEEecCCc-
Confidence            87765 67778  999999999999 99999999999999999986         442 34444 88999999999885 


Q ss_pred             cEEEEEeCCCcEEEEECCC-Ceee-e----EeecCceEEEEec-CCCEEEEEEcCCcEEEEECCCC------eEEEEEcC
Q 003271          654 DLLCSCDNNSEIRYWSINN-GSCA-G----VFKSGATQMRFQP-RLGRILAAAIENYISILDVETQ------VCRLKLQG  720 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s-~~~~-~----~~~~~i~~l~fsp-~~~~ll~~s~dg~I~IwDl~t~------~~i~~l~~  720 (835)
                        +++++.|+.|++||+++ +... .    .....+.+++|+| ++..+++++.||.|++||++..      +....+..
T Consensus       163 --l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~  240 (342)
T 1yfq_A          163 --LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             --EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             --EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeec
Confidence              77889999999999998 5432 1    1234589999999 9999999999999999999876      77777877


Q ss_pred             CCC---------CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEcCCe
Q 003271          721 HKN---------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGCYET  789 (835)
Q Consensus       721 h~~---------~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs~dg~  789 (835)
                      |..         .|.+++|+|++.+|++++ ||.|++||+.++   ..+..+..| ...|.+++  |++.+|++++.|+.
T Consensus       241 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~---~~~~~~~~~h~~~v~~~~--~~~~~l~s~s~Dg~  315 (342)
T 1yfq_A          241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR---KKIKNFAKFNEDSVVKIA--CSDNILCLATSDDT  315 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSSEEEEEE--ECSSEEEEEEECTH
T ss_pred             ccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH---hHhhhhhcccCCCceEec--CCCCeEEEEecCCc
Confidence            765         999999999999999999 999999999987   788889888 99999999  99999999999998


Q ss_pred             -EEEEE
Q 003271          790 -LELWN  794 (835)
Q Consensus       790 -I~IwD  794 (835)
                       .+.|.
T Consensus       316 ~~~~~~  321 (342)
T 1yfq_A          316 FKTNAA  321 (342)
T ss_dssp             HHHCSS
T ss_pred             cccccc
Confidence             44444

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.5e-30  Score=303.39  Aligned_cols=254  Identities=9%  Similarity=0.056  Sum_probs=197.4

Q ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCeE----EEEeccCCCCeEEEEECCC------CCEEEEEECCCeEEEEecCCCCc--
Q 003271          564 SPDGKLLATGGHDKKAVLWCTESFTV----KSTLEEHTQWITDVRFSPS------LSRLATSSADRTVRVWDTENPDY--  631 (835)
Q Consensus       564 Spdg~~Lasgs~Dg~I~VWd~~t~~~----i~~l~~h~~~V~sv~fspd------g~~Latgs~Dg~I~IWDl~t~~~--  631 (835)
                      +|++++|++++.|++|+|||+.+++.    ...+.+|.+.|.+|+|+|+      +.+||+++.||+|+|||+.++..  
T Consensus       170 ~~~~~~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~  249 (524)
T 2j04_B          170 NEHLEMFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDV  249 (524)
T ss_dssp             ------------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSS
T ss_pred             chhhhhhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccc
Confidence            34444555567889999999987653    2456678899999999996      57999999999999999986542  


Q ss_pred             --------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEee---cCceEE--EEecCC-CEEE
Q 003271          632 --------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVFK---SGATQM--RFQPRL-GRIL  696 (835)
Q Consensus       632 --------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~~---~~i~~l--~fsp~~-~~ll  696 (835)
                              +...+.+|...|.+++|++++  .|++|+.||+|++||++++.. ...+.   ..|.++  +|++++ ..|+
T Consensus       250 ~~~~~~~~p~~~l~~h~~~v~sv~~s~~~--~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~la  327 (524)
T 2j04_B          250 HVFKMCEKPSLTLSLADSLITTFDFLSPT--TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVS  327 (524)
T ss_dssp             SEEECCCSCSEEECCTTTCEEEEEESSSS--EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEE
T ss_pred             ccceeecCceEEEEcCCCCEEEEEecCCC--eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEE
Confidence                    124678899999999999863  688999999999999987643 33343   458888  567777 7899


Q ss_pred             EEEcCCcEEEEECCCCeEEEEEcCCCC--CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          697 AAAIENYISILDVETQVCRLKLQGHKN--QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t~~~i~~l~~h~~--~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      +++.|+.|+|||+++++++..+.+|..  .|.+++|+|++..|++++ |++|++||++++   .++..+.+|...|++|+
T Consensus       328 S~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~---~~~~~l~gH~~~V~sva  404 (524)
T 2j04_B          328 TVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAA---FAVHPLVSRETTITAIG  404 (524)
T ss_dssp             EEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCT---TCCEEEEECSSCEEEEE
T ss_pred             EeccCCeEEEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECccc---ccceeeecCCCceEEEE
Confidence            999999999999998877666666653  588999999999999888 889999999987   66777888999999999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEEcCCCcEEEec-----cCCCCeeEEEEeCCCCEE
Q 003271          774 FHPTFPSLLVIGCYETLELWNMTENKTLTLS-----AHDKLVSSLAASTVNGMV  822 (835)
Q Consensus       774 fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-----~h~~~V~~la~spdg~~L  822 (835)
                      |+|++++|++|+.|++|+|||+.........     .+...|.+++|+|++..+
T Consensus       405 ~Sp~g~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~~~v~~v~~sp~g~~~  458 (524)
T 2j04_B          405 VSRLHPMVLAGSADGSLIITNAARRLLHGIKNSSATQKSLRLWKWDYSIKDDKY  458 (524)
T ss_dssp             CCSSCCBCEEEETTTEEECCBSCSSTTTCC------CCCCEEEECBCCSSSCEE
T ss_pred             eCCCCCeEEEEECCCEEEEEechHhhccccccCccceeeeEEEEeccCCCCCeE
Confidence            9999999999999999999998764221111     112257899999999855

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.7e-27  Score=264.58  Aligned_cols=273  Identities=14%  Similarity=0.157  Sum_probs=223.0

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEcC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE  585 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~  585 (835)
                      .++++++.|+.|++|.....                   ..+..+.+|. .+.+++|+|++++| ++++.|+.|++||+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~-------------------~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSN-------------------KVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTT-------------------EEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCC-------------------eEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            47788999999999943222                   2344555665 48999999999977 667789999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      +++.+..+..+. .|.+++|+|++++|++++ .|+.|++||+.+++. +..+. +...+.+++|+|+++.++++++.++.
T Consensus        63 ~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~-~~~~~-~~~~~~~~~~s~dg~~l~~~~~~~~~  139 (391)
T 1l0q_A           63 TNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKT  139 (391)
T ss_dssp             TTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTE
T ss_pred             CCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeE-EEEEe-CCCCcceEEECCCCCEEEEEeCCCCE
Confidence            999998887665 899999999999886555 679999999998764 44554 34578999999999888789999999


Q ss_pred             EEEEECCCCeeeeEee--cCceEEEEecCCCEEE-EEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271          665 IRYWSINNGSCAGVFK--SGATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      |++||+.+++.+..+.  ..+..++|+|+++.++ +++.++.|++||+++++.+..+. +...+.+++|+|++++|++++
T Consensus       140 v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~g~~l~~~~  218 (391)
T 1l0q_A          140 VSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTN  218 (391)
T ss_dssp             EEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe-cCCCccceEECCCCCEEEEEe
Confidence            9999999999887776  3478899999999885 45567999999999998887776 566899999999999888775


Q ss_pred             ----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEEcCCCcEE-EeccCC
Q 003271          742 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTL-TLSAHD  807 (835)
Q Consensus       742 ----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~-sgs~dg~I~IwDl~~~~~~-~l~~h~  807 (835)
                          ++.|++||+.++   ..+..+..+ ..+.+++|+|++++|+ +++.++.|++||+.+++++ .+..|.
T Consensus       219 ~~~~~~~v~~~d~~~~---~~~~~~~~~-~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~  286 (391)
T 1l0q_A          219 VDKYFNTVSMIDTGTN---KITARIPVG-PDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMAVGK  286 (391)
T ss_dssp             ECSSCCEEEEEETTTT---EEEEEEECC-SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             cCcCCCcEEEEECCCC---eEEEEEecC-CCccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEECCc
Confidence                689999999887   666666654 4578999999999885 5567899999999999877 444443

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=1.9e-29  Score=307.34  Aligned_cols=250  Identities=20%  Similarity=0.305  Sum_probs=211.4

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC--CCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEE
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE--SFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRV  623 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~--t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~I  623 (835)
                      +.++.+|.+.|++++|+|++++|++|+.||.|+|||+.  +++.+..+.+|.+.|++++|+++  +.+|++|+.||.|++
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~v   81 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLI   81 (753)
T ss_dssp             ------CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEE
T ss_pred             eeecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEE
Confidence            34678999999999999999999999999999999998  56778889999999999999988  999999999999999


Q ss_pred             EecCCCCc-eeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc
Q 003271          624 WDTENPDY-SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       624 WDl~t~~~-~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~  700 (835)
                      ||+.++.. ....+.+|...|.+++|+|+  +. ++++|+.||.|++||++++....                       
T Consensus        82 wd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~-~l~sgs~dg~I~vwdl~~~~~~~-----------------------  137 (753)
T 3jro_A           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGP-LLLVASSDGKVSVVEFKENGTTS-----------------------  137 (753)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCS-EEEEEETTSEEEEEECCSSSCCC-----------------------
T ss_pred             EECCCCcccccccccCCCCCeEEEEECCCCCCC-EEEEEeCCCcEEEEEeecCCCcc-----------------------
Confidence            99998652 46777889999999999998  54 77788999999999998653211                       


Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-------------CCCEEEEEe-CCeEEEEEcCCCCCc-ceEEEeecC
Q 003271          701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNT-------------SGEYLASVS-DELVRVWSIGSGSKG-ECIHELSCT  765 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp-------------dg~~Lasgs-Dg~I~IwDl~t~~~~-~~i~~l~~~  765 (835)
                                    ...+.+|...|.+++|+|             ++.+|++++ ||.|++||++++... .++..+..|
T Consensus       138 --------------~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h  203 (753)
T 3jro_A          138 --------------PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGH  203 (753)
T ss_dssp             --------------CEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCC
T ss_pred             --------------eeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCC
Confidence                          112345778888888888             588899988 999999999886432 456678889


Q ss_pred             CCceEEEEEeCC---CCEEEEEEcCCeEEEEEcCCCc------EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          766 GNKFHSCVFHPT---FPSLLVIGCYETLELWNMTENK------TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       766 ~~~V~sv~fspd---g~~L~sgs~dg~I~IwDl~~~~------~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ...|.+++|+|+   +.+|++++.|+.|++||+.++.      ......|...|++++|+|++.+|++|+.||.|+|||
T Consensus       204 ~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd  282 (753)
T 3jro_A          204 SDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWK  282 (753)
T ss_dssp             SSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCB
T ss_pred             CCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEe
Confidence            999999999999   8999999999999999998873      224456889999999999999999999999999996

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.97  E-value=8.2e-29  Score=281.14  Aligned_cols=251  Identities=19%  Similarity=0.371  Sum_probs=217.3

Q ss_pred             EEEecCCCCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCC----------CeEEEEeccCCCCeEEEEECCCCC-EEEEE
Q 003271          548 FQLIPASTSKVESCHFSPD-GKLLATGGHDKKAVLWCTES----------FTVKSTLEEHTQWITDVRFSPSLS-RLATS  615 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t----------~~~i~~l~~h~~~V~sv~fspdg~-~Latg  615 (835)
                      .....+|.+.|++++|+|+ +.+||+++.||.|+|||+.+          ...+..+.+|...|++++|+|++. +|++|
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~  200 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSA  200 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEE
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEE
Confidence            3455689999999999997 67999999999999999986          677788899999999999999988 99999


Q ss_pred             ECCCeEEEEecCCCCc------eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC---eeeeEee---cCc
Q 003271          616 SADRTVRVWDTENPDY------SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG---SCAGVFK---SGA  683 (835)
Q Consensus       616 s~Dg~I~IWDl~t~~~------~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~---~~~~~~~---~~i  683 (835)
                      +.||.|+|||+.+...      ....+.+|...|.+++|+|++..+|++++.|+.|++||++++   +.+..+.   ..+
T Consensus       201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v  280 (430)
T 2xyi_A          201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEV  280 (430)
T ss_dssp             CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCE
T ss_pred             eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCe
Confidence            9999999999987432      135677899999999999977789999999999999999976   3444443   558


Q ss_pred             eEEEEecCCC-EEEEEEcCCcEEEEECCC-CeEEEEEcCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCCCC----
Q 003271          684 TQMRFQPRLG-RILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSGSK----  755 (835)
Q Consensus       684 ~~l~fsp~~~-~ll~~s~dg~I~IwDl~t-~~~i~~l~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~~~----  755 (835)
                      .+++|+|++. .+++++.|+.|++||+++ ..++..+..|...|.+++|+|++. +|++++ |+.|+|||+.....    
T Consensus       281 ~~i~~~p~~~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  360 (430)
T 2xyi_A          281 NCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQST  360 (430)
T ss_dssp             EEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCH
T ss_pred             EEEEeCCCCCCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCc
Confidence            9999999987 688899999999999998 567888888999999999999985 677777 99999999987321    


Q ss_pred             -------cceEEEeecCCCceEEEEEeCCCC-EEEEEEcCCeEEEEEcCCC
Q 003271          756 -------GECIHELSCTGNKFHSCVFHPTFP-SLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       756 -------~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs~dg~I~IwDl~~~  798 (835)
                             ...+..+.+|...|.+++|+|+++ +|++++.|+.|+||++...
T Consensus       361 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          361 EDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             HHHHHCCTTEEEECCCCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             cccccCCcceEEEcCCCCCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence                   256778888999999999999999 8999999999999998754

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=1.3e-27  Score=265.43  Aligned_cols=260  Identities=12%  Similarity=0.124  Sum_probs=219.1

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl  646 (835)
                      .++++++.|+.|++||+.+++.+..+..|. .+.+++|+|++++| ++++.|+.|++||+.+++. +..+..+. .+.++
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~-~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEE
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECCCCCEEEEECCCCCeEEEEECCCCeE-EEEEECCC-Cccce
Confidence            467888999999999999999999988775 48999999999977 5666899999999988764 55555444 89999


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEE-EEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRIL-AAAIENYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll-~~s~dg~I~IwDl~t~~~i~~l~~h~~  723 (835)
                      +|+|+++.++++++.++.|++||+.+++.+..+..  .+..++|+|+++.++ +++.++.|++||+.+++.+..+..+ .
T Consensus        80 ~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~-~  158 (391)
T 1l0q_A           80 AVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-R  158 (391)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECC-S
T ss_pred             EECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecC-C
Confidence            99999998888888889999999999998877663  478899999999884 5566899999999999998888754 5


Q ss_pred             CeEEEEEcCCCCEEE-EEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE---cCCeEEEEEcCCC
Q 003271          724 QVHSVCWNTSGEYLA-SVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG---CYETLELWNMTEN  798 (835)
Q Consensus       724 ~I~sl~fspdg~~La-sgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs---~dg~I~IwDl~~~  798 (835)
                      .+.+++|+|++++|+ +++ ++.|++||++++   .++..+. +...+.+++|+|++++|++++   .++.|++||+.++
T Consensus       159 ~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~-~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~  234 (391)
T 1l0q_A          159 SPKGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTN  234 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTT
T ss_pred             CcceEEECCCCCEEEEEeCCCCEEEEEECCCC---eEEEEEe-cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCC
Confidence            679999999999885 455 889999999887   5555554 456789999999999999998   6889999999999


Q ss_pred             cEEEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 003271          799 KTLTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK  835 (835)
Q Consensus       799 ~~~~l~~h~~~V~~la~spdg~~L-aSgs~DG~V~IWd  835 (835)
                      +.+........+.+++|+|++++| ++++.|+.|++||
T Consensus       235 ~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d  272 (391)
T 1l0q_A          235 KITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVID  272 (391)
T ss_dssp             EEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEE
Confidence            887444444568999999999877 6778899999996

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.2e-29  Score=289.60  Aligned_cols=260  Identities=9%  Similarity=0.077  Sum_probs=210.7

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~  632 (835)
                      .-...|.+++|+|||+++|+++.|++|+  |...++   .+.+|...|.+|+|+|+|       .++.+.+|+.....  
T Consensus        13 ~~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~---~l~gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~~--   78 (588)
T 2j04_A           13 EFEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK---DINCNSKNLFHVKEFPLE-------FENKLDFELAQQNG--   78 (588)
T ss_dssp             CCSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS---CCSSBGGGTEEEEEECCC-------CCCTTTTSCCCSSC--
T ss_pred             HhhccEEEEEECCCCCEEEEEcCCceee--cccccc---eecCCCccEEEEEECCCC-------CcceEEEEeCCCce--
Confidence            3456799999999999999999999999  766554   447999999999999998       45555555543221  


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-c------CceEEEEecCCCEEEEEEcCCcEE
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-S------GATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-~------~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      ... ..|...|.+++|+|+|. .+++++.||.|++||...  ++..+. .      .+.+++|+|+|.+|++++.||.|+
T Consensus        79 ~~~-~~~~~~V~~vawSPdG~-~LAs~s~dg~V~iwd~~~--~l~~l~~~~~~~~~sv~svafSPDG~~LAsgs~DGtVk  154 (588)
T 2j04_A           79 LLN-SQPVCYPRVCKPSPIDD-WMAVLSNNGNVSVFKDNK--MLTNLDSKGNLSSRTYHCFEWNPIESSIVVGNEDGELQ  154 (588)
T ss_dssp             SST-TSCSCCEEEEEECSSSS-CEEEEETTSCEEEEETTE--EEEECCCSSCSTTTCEEEEEECSSSSCEEEEETTSEEE
T ss_pred             Eee-cCCCCcEEEEEECCCCC-EEEEEeCCCcEEEEeCCc--eeeeccCCCccccccEEEEEEcCCCCEEEEEcCCCEEE
Confidence            112 24578999999999987 666899999999999654  444333 2      388999999999999999999999


Q ss_pred             EEECCCCe-------EEEEE----cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEe-ecCCCceEEEE
Q 003271          706 ILDVETQV-------CRLKL----QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-SCTGNKFHSCV  773 (835)
Q Consensus       706 IwDl~t~~-------~i~~l----~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~  773 (835)
                      |||+.++.       .+..+    .+|...|.+++|+|+| +++++.|+.|++||+..+.......++ ..|...|.+++
T Consensus       155 IWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~sva  233 (588)
T 2j04_A          155 FFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLK  233 (588)
T ss_dssp             EEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEE
T ss_pred             EEECCCCccccccceeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEE
Confidence            99999875       35665    6688899999999999 444444999999999887432234566 47788999999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEE--eCCCCEEEEEECCCcEEEeC
Q 003271          774 FHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA--STVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       774 fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~--spdg~~LaSgs~DG~V~IWd  835 (835)
                      |+  +..|++++ ++.|++||+.+++.. ...+|...|.+++|  +|++..|++++.||+ ++|.
T Consensus       234 Fs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~  294 (588)
T 2j04_A          234 IV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLL  294 (588)
T ss_dssp             EE--TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEE
T ss_pred             EE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEe
Confidence            99  57788776 699999999999985 44489999999999  999999999999999 9984

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=1.1e-27  Score=261.37  Aligned_cols=284  Identities=17%  Similarity=0.244  Sum_probs=227.9

Q ss_pred             CCceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEE
Q 003271          480 SSKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVE  559 (835)
Q Consensus       480 ~~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~  559 (835)
                      .....+.|+++..            ...++++|+.|+.|++|.....               +  ......+.+|.+.|+
T Consensus        40 ~~v~~~~~~~~~~------------~g~~l~~~~~dg~i~iw~~~~~---------------~--~~~~~~~~~h~~~v~   90 (368)
T 3mmy_A           40 DSIGCLSFSPPTL------------PGNFLIAGSWANDVRCWEVQDS---------------G--QTIPKAQQMHTGPVL   90 (368)
T ss_dssp             SCEEEEEECCTTS------------SSEEEEEEETTSEEEEEEECTT---------------S--CEEEEEEEECSSCEE
T ss_pred             CceEEEEEcCCCC------------CceEEEEECCCCcEEEEEcCCC---------------C--ceeEEEeccccCCEE
Confidence            3566667766521            1268999999999999954331               1  122356778999999


Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEE--CCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF--SPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~f--spdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      +++|+|++++|++++.||.|++||+.+++.+. +..|...|.+++|  ++++.+|++++.||.|++||+.+++. +..+.
T Consensus        91 ~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-~~~~~  168 (368)
T 3mmy_A           91 DVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNP-MMVLQ  168 (368)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSC-SEEEE
T ss_pred             EEEECcCCCEEEEEcCCCcEEEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcE-EEEEe
Confidence            99999999999999999999999999998776 4579999999999  89999999999999999999998764 56666


Q ss_pred             cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-----ecCceEEEEecCCCE----EEEEEcCCcEEEEE
Q 003271          638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----KSGATQMRFQPRLGR----ILAAAIENYISILD  708 (835)
Q Consensus       638 ~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-----~~~i~~l~fsp~~~~----ll~~s~dg~I~IwD  708 (835)
                      .+ ..+.++.+.+.   .+++++.++.+++|+++........     .....++.+.++...    +++++.|+.|++||
T Consensus       169 ~~-~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~  244 (368)
T 3mmy_A          169 LP-ERCYCADVIYP---MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHY  244 (368)
T ss_dssp             CS-SCEEEEEEETT---EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEE
T ss_pred             cC-CCceEEEecCC---eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEe
Confidence            55 46777777754   5667888999999999876543322     133566666665544    99999999999999


Q ss_pred             CCCC---eEEEEEcCCCC------------CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          709 VETQ---VCRLKLQGHKN------------QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       709 l~t~---~~i~~l~~h~~------------~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      ++..   ..+..+..|..            .|.+++|+|++.+|++++ ||.|++||+.++   .++..+..|...|.++
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~v~~~  321 (368)
T 3mmy_A          245 INPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDAR---TKLKTSEQLDQPISAC  321 (368)
T ss_dssp             SSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTT---EEEEECCCCSSCEEEE
T ss_pred             cCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCC---cEEEEecCCCCCceEE
Confidence            9987   55667777765            799999999999999999 999999999987   7888999999999999


Q ss_pred             EEeCCCCEEEEEEcCCeEE---EEEcCCCcEE
Q 003271          773 VFHPTFPSLLVIGCYETLE---LWNMTENKTL  801 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~---IwDl~~~~~~  801 (835)
                      +|+|++.+|++++.|+..+   +|+.+....+
T Consensus       322 ~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i  353 (368)
T 3mmy_A          322 CFNHNGNIFAYASSYDWSKGHEFYNPQKKNYI  353 (368)
T ss_dssp             EECTTSSCEEEEECCCSTTCGGGCCTTSCCEE
T ss_pred             EECCCCCeEEEEecccccccccccCCCcccee
Confidence            9999999999999988444   4444444444

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=4.5e-28  Score=261.16  Aligned_cols=278  Identities=19%  Similarity=0.215  Sum_probs=204.4

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEE
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWC  583 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--dg~~Lasgs~Dg~I~VWd  583 (835)
                      ..++++|+.|+.|++|.....               ...+.....+.+|...|++++|+|  |+.+|++|+.||.|+|||
T Consensus        23 ~~~l~~~~~dg~i~iw~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd   87 (351)
T 3f3f_A           23 GRHVATCSSDQHIKVFKLDKD---------------TSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE   87 (351)
T ss_dssp             SSEEEEEETTSEEEEEEECSS---------------SCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE
T ss_pred             CCEEEEeeCCCeEEEEECCCC---------------CCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe
Confidence            368999999999999954332               122345677889999999999999  699999999999999999


Q ss_pred             cCCC---------eEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCceeEE------------eecCC
Q 003271          584 TESF---------TVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRT------------FTGHS  640 (835)
Q Consensus       584 ~~t~---------~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~~~~~------------~~~h~  640 (835)
                      +.++         +.+..+..|...|.+++|+|+  +.+|++++.||.|++||+.++......            ...|.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (351)
T 3f3f_A           88 EDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHL  167 (351)
T ss_dssp             ECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCS
T ss_pred             cCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCcc
Confidence            9887         678888999999999999999  999999999999999999876532110            12678


Q ss_pred             CCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCee--eeEee---cCceEEEEecCC----CEEEEEEcCCcEEEEEC
Q 003271          641 TTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSC--AGVFK---SGATQMRFQPRL----GRILAAAIENYISILDV  709 (835)
Q Consensus       641 ~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~--~~~~~---~~i~~l~fsp~~----~~ll~~s~dg~I~IwDl  709 (835)
                      ..|.+++|+|+  ...++++++.++.+.+|+...++.  +..+.   ..+.+++|+|++    ..|++++.|+.|++||+
T Consensus       168 ~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~  247 (351)
T 3f3f_A          168 QSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKI  247 (351)
T ss_dssp             CCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEE
T ss_pred             cceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeC
Confidence            89999999997  345788899999998888887765  33333   458999999998    78999999999999999


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271          710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       710 ~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg  784 (835)
                      +.+........+...+....+.+...++..+.     ...+.+|+...   ...+..+.+|...|++++|+|++++|+++
T Consensus       248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~h~~~v~~~~~s~~~~~l~s~  324 (351)
T 3f3f_A          248 TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQ---VELLSEHDDHNGEVWSVSWNLTGTILSSA  324 (351)
T ss_dssp             EECC---------------------------------------CCSEE---EEEEEEECTTSSCEEEEEECSSSCCEEEE
T ss_pred             CCCcCccccCCcccceeccCCCcccccccccccccccceeeeeccccc---ccEEEEEecccccEEEEEEcCCCCEEEEe
Confidence            98766555544444455555555555555544     22444444333   37788889999999999999999999999


Q ss_pred             EcCCeEEEEEcCCCcEE
Q 003271          785 GCYETLELWNMTENKTL  801 (835)
Q Consensus       785 s~dg~I~IwDl~~~~~~  801 (835)
                      +.|+.|+|||+.+++.+
T Consensus       325 ~~dg~v~iw~~~~~~~~  341 (351)
T 3f3f_A          325 GDDGKVRLWKATYSNEF  341 (351)
T ss_dssp             ETTSCEEEEEECTTSCE
T ss_pred             cCCCcEEEEecCcCcch
Confidence            99999999999887543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-29  Score=287.77  Aligned_cols=243  Identities=10%  Similarity=0.108  Sum_probs=203.4

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC-----CeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~-----~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      .|...|++|+|||||.+||+++.||.|+|||.+.  ++..+. |..     .|.+++|+|||++|++|+.||+|+|||+.
T Consensus        83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~  159 (588)
T 2j04_A           83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIR  159 (588)
T ss_dssp             SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECC
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECC
Confidence            5688999999999999999999999999999655  667777 665     49999999999999999999999999999


Q ss_pred             CCCc------eeEEe----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee---eEee----cCceEEEEec
Q 003271          628 NPDY------SLRTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA---GVFK----SGATQMRFQP  690 (835)
Q Consensus       628 t~~~------~~~~~----~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~---~~~~----~~i~~l~fsp  690 (835)
                      ++..      .+..+    .+|...|.+++|+|++   +++++.|+.|++||+..++..   ..+.    ..+.+++|+ 
T Consensus       160 ~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg---Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs-  235 (588)
T 2j04_A          160 KNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV---LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV-  235 (588)
T ss_dssp             CCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE---EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE-
T ss_pred             CCccccccceeeeeeecccccccccEEEEEEcCCc---EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE-
Confidence            8753      34565    6678899999999997   567788999999999887742   3332    348999999 


Q ss_pred             CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEE--cCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271          691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCW--NTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       691 ~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~f--spdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                       +..+++++ ++.|++||+.++.......+|...|..+.|  +|++..|+++. ||+ ++|.+.                
T Consensus       236 -g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d----------------  296 (588)
T 2j04_A          236 -DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED----------------  296 (588)
T ss_dssp             -TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred             -CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence             57777776 799999999998885544479999999999  99999999999 899 999975                


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                         .+.++|++..+++.  |++|++|+...+... ...+...|.+++|+|||.++|+++.
T Consensus       297 ---~~~~spd~~l~a~~--d~~v~lW~~~g~~l~-~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          297 ---ELHVTADNIIAPYL--EKKFKKWSTIWNEFN-NYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             ---SEEEECCCSSHHHH--HHHHHHTTTTTTSSS-SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             ---cEEECCCceEEEEc--CCEEEEEECCCCcee-eeccceEEEEEEECCCCCEEEEEEe
Confidence               15699999866664  899999998766533 3344677999999999999999874

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.96  E-value=1.2e-28  Score=276.66  Aligned_cols=262  Identities=15%  Similarity=0.134  Sum_probs=177.3

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE-----EeccCCCCeEEEEECC--------CCCEEEEEECC
Q 003271          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-----TLEEHTQWITDVRFSP--------SLSRLATSSAD  618 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~-----~l~~h~~~V~sv~fsp--------dg~~Latgs~D  618 (835)
                      ..|...+....+++++.+|++|+.|++|+|||+.++....     .+.+|.+.|.+|+|+|        |+++|++|+.|
T Consensus        86 ~~~~~~~~~~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D  165 (393)
T 4gq1_A           86 NLHDGDGNVNSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDD  165 (393)
T ss_dssp             C----------CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETT
T ss_pred             cccCCCcceeecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECC
Confidence            3455556666667778899999999999999999886543     3578999999999997        78999999999


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEE
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAA  698 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~  698 (835)
                      ++|+|||+.++.. +..+..|...|.+++|+|++..+|++++.|+.|++||+++++..........     ......+. 
T Consensus       166 ~tv~~Wd~~~~~~-~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~-----~~~~~~~s-  238 (393)
T 4gq1_A          166 CTLIIWRLTDEGP-ILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTEL-----VKNPWLLT-  238 (393)
T ss_dssp             SEEEEEEEETTEE-EEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC---------------CSCCCSEE-
T ss_pred             CeEEEEECCCCce-eeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCC-----cccceEEe-
Confidence            9999999987654 5666778899999999999888899999999999999998876544321100     00000111 


Q ss_pred             EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc-CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceE------
Q 003271          699 AIENYISILDVETQVCRLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFH------  770 (835)
Q Consensus       699 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs-pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~------  770 (835)
                              ++...........+|...+.++.|+ +++..|++++ |+.+++||+..+.   ....+..+...+.      
T Consensus       239 --------~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~---~~~~l~~~~~~~~~~~~~~  307 (393)
T 4gq1_A          239 --------LNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANN---DYNEISDSTMKLGPKNLLP  307 (393)
T ss_dssp             --------EESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC----------------------CCSC
T ss_pred             --------cccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCC---CCceEeeecCccccEEEcc
Confidence                    1111111222345688899999986 7999999999 9999999998763   2222222222222      


Q ss_pred             ------------EEEEeC--CCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          771 ------------SCVFHP--TFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       771 ------------sv~fsp--dg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                                  .+.|+|  ++.++++++.|+.|+|||+.++... ....|...|.+++|+|||++||++++||.+
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~  383 (393)
T 4gq1_A          308 NVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVL  383 (393)
T ss_dssp             SEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEE
T ss_pred             ccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeE
Confidence                        223333  2335566777999999999988766 667899999999999999999999988753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.6e-26  Score=260.59  Aligned_cols=244  Identities=10%  Similarity=0.048  Sum_probs=201.8

Q ss_pred             EecCCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEEcC--CCeEEEEec--cCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          550 LIPASTSKVESCHFSPDGKLL-ATGGHDKKAVLWCTE--SFTVKSTLE--EHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~--t~~~i~~l~--~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      ...+|.+.|++++|+|++++| ++|+.||.|+|||+.  +++.+..+.  .|...|++++|+|++.+|++++.||.|++|
T Consensus        97 ~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~  176 (450)
T 2vdu_B           97 GAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSI  176 (450)
T ss_dssp             ---CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEE
T ss_pred             CCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEE
Confidence            345788899999999999996 889999999999999  888887776  577899999999999999999999999999


Q ss_pred             ecCCCCc---eeEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCeeeeEe----ecCceEEEEecCCCEE
Q 003271          625 DTENPDY---SLRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGSCAGVF----KSGATQMRFQPRLGRI  695 (835)
Q Consensus       625 Dl~t~~~---~~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~~~i~~l~fsp~~~~l  695 (835)
                      ++.+...   ....+.+|...|.+++|+|+  +..+|++|+.|+.|++||+.+++++..+    ...+.+++|+ ++.+|
T Consensus       177 ~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l  255 (450)
T 2vdu_B          177 DINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLL  255 (450)
T ss_dssp             ETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEE
T ss_pred             ecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEE
Confidence            9987653   22367789999999999998  2347789999999999999998877663    2458999999 99999


Q ss_pred             EEEEcCCcEEEEECCCCeEEEEEcC-------------------------CCCCeEEEEEcCCCCEEEEEe--CCeEEEE
Q 003271          696 LAAAIENYISILDVETQVCRLKLQG-------------------------HKNQVHSVCWNTSGEYLASVS--DELVRVW  748 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t~~~i~~l~~-------------------------h~~~I~sl~fspdg~~Lasgs--Dg~I~Iw  748 (835)
                      ++++.|+.|++||+++++++..+..                         ....|.+++|+|++.+|++++  |+.|+||
T Consensus       256 ~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw  335 (450)
T 2vdu_B          256 LSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFVEATKCIIIL  335 (450)
T ss_dssp             EEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSSSSEEEEEETTCSEEEEE
T ss_pred             EEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence            9999999999999999998887752                         345799999999999999887  8899999


Q ss_pred             Ec--CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-------CCeEEEEEcC
Q 003271          749 SI--GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-------YETLELWNMT  796 (835)
Q Consensus       749 Dl--~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-------dg~I~IwDl~  796 (835)
                      ++  ..+.....+..+..+ ..|.+++|+|++ .+++++.       +..|.+|.+.
T Consensus       336 ~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~~-~~v~~~~~~~~~~~~~~i~v~~~~  390 (450)
T 2vdu_B          336 EMSEKQKGDLALKQIITFP-YNVISLSAHNDE-FQVTLDNKESSGVQKNFAKFIEYN  390 (450)
T ss_dssp             EECSSSTTCEEEEEEEECS-SCEEEEEEETTE-EEEEECCTTCCSSCCCSEEEEEEE
T ss_pred             EeccCCCCceeeccEeccC-CceEEEEecCCc-EEEEEecccCCCCCCcceEEEEEE
Confidence            99  444444566777777 889999999954 4444433       3457777654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=1.5e-25  Score=262.61  Aligned_cols=307  Identities=10%  Similarity=0.064  Sum_probs=246.3

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc-
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT-  584 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~-  584 (835)
                      ..++++++.|+.|.+|.....                   ..+..+..+.. +.+++|+|||++|++++.|+.|++||+ 
T Consensus       149 ~~~~vs~~~d~~V~v~D~~t~-------------------~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~  208 (543)
T 1nir_A          149 NLFSVTLRDAGQIALVDGDSK-------------------KIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLW  208 (543)
T ss_dssp             GEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             CEEEEEEcCCCeEEEEECCCc-------------------eEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECc
Confidence            367888899999999933221                   23445553323 899999999999999999999999999 


Q ss_pred             -CCCeEEEEeccCCCCeEEEEECC----CCCEEEEEEC-CCeEEEEecCCCCceeEEeec----------CC-CCeEEEE
Q 003271          585 -ESFTVKSTLEEHTQWITDVRFSP----SLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HS-TTVMSLD  647 (835)
Q Consensus       585 -~t~~~i~~l~~h~~~V~sv~fsp----dg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~----------h~-~~V~sl~  647 (835)
                       .+++++.++. +...+..++|+|    |+++|++++. +++|.|||..+.+. +..+..          |. ..+.++.
T Consensus       209 ~~t~~~~~~i~-~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~-~~~i~~~g~~~~~~~~~~~~~v~~i~  286 (543)
T 1nir_A          209 AKEPTKVAEIK-IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAII  286 (543)
T ss_dssp             SSSCEEEEEEE-CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             CCCCcEEEEEe-cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccccc-ceeecccCcccCccccccCCceEEEE
Confidence             8999998887 455689999999    9999999885 89999999988764 454443          22 3789999


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCeeee--Eee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcC--
Q 003271          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG--  720 (835)
Q Consensus       648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~--  720 (835)
                      ++|++..++++...++.|.+||+.+.+.+.  .+.  .....+.|+|+++++++++. ++.|.+||+.+++++..+..  
T Consensus       287 ~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~  366 (543)
T 1nir_A          287 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK  366 (543)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             ECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence            999999899999999999999998866543  333  33778999999999887775 78999999999999888764  


Q ss_pred             --CCCCeEEEEEcCC-CCEEEEEe--CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCCCEEEEEE------
Q 003271          721 --HKNQVHSVCWNTS-GEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIG------  785 (835)
Q Consensus       721 --h~~~I~sl~fspd-g~~Lasgs--Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg~~L~sgs------  785 (835)
                        |......+ ++|+ +.+++++.  |++|.|||+.+...    .+++.++..+...+..++++|++++|++++      
T Consensus       367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~  445 (543)
T 1nir_A          367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDA  445 (543)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSH
T ss_pred             CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCc
Confidence              55444444 4676 66677764  78999999988321    478999999998899999999999999987      


Q ss_pred             -cCCeEEEEEcCCCcEE-Ee---------ccCCCCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 003271          786 -CYETLELWNMTENKTL-TL---------SAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK  835 (835)
Q Consensus       786 -~dg~I~IwDl~~~~~~-~l---------~~h~~~V~~la~spdg~~LaSgs-----~DG~V~IWd  835 (835)
                       .+++|.|||+.+++.. ..         ..+...+..++|+++|+.|+++.     .|+.|.|||
T Consensus       446 ~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D  511 (543)
T 1nir_A          446 RISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  511 (543)
T ss_dssp             HHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEE
T ss_pred             ccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEE
Confidence             2679999999988765 32         35678899999999999888663     379999997

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.95  E-value=5.4e-25  Score=247.87  Aligned_cols=277  Identities=10%  Similarity=0.115  Sum_probs=224.2

Q ss_pred             ccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeE
Q 003271          500 NQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKA  579 (835)
Q Consensus       500 ~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I  579 (835)
                      ..+.....++++++.|+.|++|........              .......+.+|.+.|.+++|+++++++++++.|+.|
T Consensus       128 ~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v  193 (433)
T 3bws_A          128 VRFIDNTRLAIPLLEDEGMDVLDINSGQTV--------------RLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAV  193 (433)
T ss_dssp             CEESSSSEEEEEBTTSSSEEEEETTTCCEE--------------EECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEE
T ss_pred             EEEeCCCeEEEEeCCCCeEEEEECCCCeEe--------------eecCcccccccCCceeEEEEcCCCEEEEEECCCCEE
Confidence            334445578888888999999954332100              000111346899999999999999999999999999


Q ss_pred             EEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEE
Q 003271          580 VLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCS  658 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~s  658 (835)
                      ++||+++++.+..+..|...+.+++|+|+++++++++ .|+.|++||+.+++. +..+.. ...+.+++|+|+++.++++
T Consensus       194 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~-~~~~~~-~~~~~~~~~~~~g~~l~~~  271 (433)
T 3bws_A          194 HVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE-IRKTDK-IGLPRGLLLSKDGKELYIA  271 (433)
T ss_dssp             EEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE-EEECCC-CSEEEEEEECTTSSEEEEE
T ss_pred             EEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE-EEEecC-CCCceEEEEcCCCCEEEEE
Confidence            9999999999999999999999999999999886555 799999999987653 455544 4569999999998866655


Q ss_pred             Ee-------CCCcEEEEECCCCeeeeEe--ecCceEEEEecCCCEEEEE-EcCCcEEEEECCCCeEEEEEcCCCCCeEEE
Q 003271          659 CD-------NNSEIRYWSINNGSCAGVF--KSGATQMRFQPRLGRILAA-AIENYISILDVETQVCRLKLQGHKNQVHSV  728 (835)
Q Consensus       659 gs-------~Dg~I~iwDl~s~~~~~~~--~~~i~~l~fsp~~~~ll~~-s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl  728 (835)
                      +.       .|+.|++||+.+++.+..+  ...+..++|+|+++.++++ +.++.|++||+.+++.+..+. +...+.++
T Consensus       272 ~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~  350 (433)
T 3bws_A          272 QFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTI  350 (433)
T ss_dssp             EEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEE
T ss_pred             ECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeE
Confidence            43       5889999999999887666  4568889999999876555 678999999999998888776 77889999


Q ss_pred             EEcCCCCEEEEEe-C---------------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEE
Q 003271          729 CWNTSGEYLASVS-D---------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLE  791 (835)
Q Consensus       729 ~fspdg~~Lasgs-D---------------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~  791 (835)
                      +|+|++++|++++ +               |.|++||+.++   +.+..+.. ...+.+++|+|++++|++++. ++.|+
T Consensus       351 ~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~  426 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTD---TVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIR  426 (433)
T ss_dssp             EECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTT---EEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEE
T ss_pred             EEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCC---cEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEE
Confidence            9999999888877 2               49999999887   66666665 567899999999999998886 99999


Q ss_pred             EEEcCC
Q 003271          792 LWNMTE  797 (835)
Q Consensus       792 IwDl~~  797 (835)
                      +|+++.
T Consensus       427 v~~~~~  432 (433)
T 3bws_A          427 VYRRDG  432 (433)
T ss_dssp             EEEETT
T ss_pred             EEEecC
Confidence            999864

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.95  E-value=3.9e-26  Score=252.58  Aligned_cols=243  Identities=9%  Similarity=0.026  Sum_probs=183.2

Q ss_pred             EEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271          581 LWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       581 VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                      ||++.+...+..+..|...|++++|+||+++|++|+.|+ ++|||+.+... ....  +...+..+++.++++.++++++
T Consensus         3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~~~~~   78 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAH-IMSQ--EMRHLSKVRMLHRTNYVAFVTG   78 (355)
T ss_dssp             ----------------CCCCCEEEECTTSSEEEEECSSE-EEEEEETTEEE-EEEE--ECSCCCEEEECTTSSEEEEECS
T ss_pred             cccccccCCccccccCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCcce-eeee--ecCCeEEEEEcCCCCEEEEEEC
Confidence            567777777777889999999999999999999998775 78999987543 2222  2235888889988887778888


Q ss_pred             CCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCC-eEEEEEcCCCCCeEEEEEcCCCCEE
Q 003271          661 NNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQ-VCRLKLQGHKNQVHSVCWNTSGEYL  737 (835)
Q Consensus       661 ~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~-~~i~~l~~h~~~I~sl~fspdg~~L  737 (835)
                      .|+.|++||+.+++++..+.  ..+.+++++++  .++ .+.++.|++||+.+. +.+..+..   ....+++++  .++
T Consensus        79 ~d~~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~--~~~-~~~~~~i~i~d~~~~~~~~~~~~~---~~~~~~~s~--~~l  150 (355)
T 3vu4_A           79 VKEVVHIWDDVKKQDVSRIKVDAPVKDLFLSRE--FIV-VSYGDVISVFKFGNPWKRITDDIR---FGGVCEFSN--GLL  150 (355)
T ss_dssp             STTEEEEEETTTTEEEEEEECSSCEEEEEECSS--EEE-EEETTEEEEEESSTTCCBSSCCEE---EEEEEEEET--TEE
T ss_pred             CccEEEEEECCCCcEEEEEECCCceEEEEEcCC--EEE-EEEcCEEEEEECCCCceeeEEecc---CCceEEEEc--cEE
Confidence            89999999999999887765  44778888765  333 345899999999987 55554443   444566666  666


Q ss_pred             EEE--e-CCeEEEEEcCCCCCc------------c-eEEEeecCCCceEEEEEeCCCCEEEEEEcCCe-EEEEEcCCCcE
Q 003271          738 ASV--S-DELVRVWSIGSGSKG------------E-CIHELSCTGNKFHSCVFHPTFPSLLVIGCYET-LELWNMTENKT  800 (835)
Q Consensus       738 asg--s-Dg~I~IwDl~t~~~~------------~-~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~-I~IwDl~~~~~  800 (835)
                      +++  + ||.|++||+.++...            . ++..+.+|...|.+++|+|++.+|++++.|++ |+|||+.++++
T Consensus       151 a~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~  230 (355)
T 3vu4_A          151 VYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTIIRVFKTEDGVL  230 (355)
T ss_dssp             EEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEEEEEETTTCCE
T ss_pred             EEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEEEEEECCCCcE
Confidence            664  4 999999999875310            1 26788899999999999999999999999998 99999999988


Q ss_pred             E-Eec-c-CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          801 L-TLS-A-HDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       801 ~-~l~-~-h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      + .+. + |...|.+++|+|++++|++++.|++|+|||
T Consensus       231 ~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~  268 (355)
T 3vu4_A          231 VREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFE  268 (355)
T ss_dssp             EEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEE
T ss_pred             EEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEE
Confidence            7 454 4 999999999999999999999999999996

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.5e-26  Score=281.60  Aligned_cols=233  Identities=17%  Similarity=0.263  Sum_probs=198.1

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCC--CCEEEEEeCCCeEEEE
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPD--GKLLATGGHDKKAVLW  582 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpd--g~~Lasgs~Dg~I~VW  582 (835)
                      ...++++|+.|+.|++|...                 ......+..+.+|.+.|++++|+++  +.+|++|+.||.|++|
T Consensus        20 dg~~latg~~dg~I~vwd~~-----------------~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A           20 YGKRLATCSSDKTIKIFEVE-----------------GETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             SSCCEEEEETTTEEEEEEEE-----------------TTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             CCCeEEEEECCCcEEEEecC-----------------CCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            34689999999999999432                 1234567788999999999999988  9999999999999999


Q ss_pred             EcCCCe--EEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCc-eeEEeecCCCCeEEEEEcCC------
Q 003271          583 CTESFT--VKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPS------  651 (835)
Q Consensus       583 d~~t~~--~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~-~~~~~~~h~~~V~sl~fsp~------  651 (835)
                      |+.+++  .+..+.+|...|++++|+|+  +.+|++|+.||.|++||+.+... ....+.+|...|.+++|+|.      
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            999987  77888899999999999999  99999999999999999987632 34567789999999999994      


Q ss_pred             ------CCcEEEEEeCCCcEEEEECCCC----eeeeEee---cCceEEEEecC---CCEEEEEEcCCcEEEEECCCCe--
Q 003271          652 ------KEDLLCSCDNNSEIRYWSINNG----SCAGVFK---SGATQMRFQPR---LGRILAAAIENYISILDVETQV--  713 (835)
Q Consensus       652 ------g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~---~~i~~l~fsp~---~~~ll~~s~dg~I~IwDl~t~~--  713 (835)
                            +..++++|+.||.|++||++++    .+...+.   ..+.+++|+|+   +..+++++.||.|++||++++.  
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~~~~  242 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNEQGP  242 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEESSSCEEEEEESSSSSC
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEEEecCCEEEEecCCCCCCc
Confidence                  2347779999999999999877    3334433   45899999999   8999999999999999999863  


Q ss_pred             ---EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271          714 ---CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       714 ---~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~  754 (835)
                         .......|...|++++|+|+|.+|++++ ||.|++||+....
T Consensus       243 ~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          243 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             CBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence               3333445888999999999999999998 9999999998654

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.9e-26  Score=248.10  Aligned_cols=261  Identities=11%  Similarity=0.081  Sum_probs=198.8

Q ss_pred             cCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEE
Q 003271          503 TDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW  582 (835)
Q Consensus       503 ~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VW  582 (835)
                      ...+.++++|+.|+.|++|....+.                ....+.     ...|.++.|+|+   +++++.|++|++|
T Consensus        45 ~~d~~~l~sg~~Dg~v~iwd~~~~~----------------~~~~~~-----~~~v~~~~~~~~---~~s~s~D~~i~~w  100 (343)
T 3lrv_A           45 YYDKWVCMCRCEDGALHFTQLKDSK----------------TITTIT-----TPNPRTGGEHPA---IISRGPCNRLLLL  100 (343)
T ss_dssp             SEEEEEEEEEEETTEEEEEEESSSS----------------CEEEEE-----EECCCTTCCCCS---EEEECSTTEEEEE
T ss_pred             cCCCCEEEEECCCCcEEEEECCCCc----------------EEEEEe-----cCCceeeeeCCc---eEEecCCCeEEEE
Confidence            3445789999999999999553331                111111     345778888888   9999999999999


Q ss_pred             EcC---------CCeEEEEec-cCCCCeEEEEECC--CCCEEEEEECCCeEEEEecCCCCceeEEe-ecCCCCeEEEEEc
Q 003271          583 CTE---------SFTVKSTLE-EHTQWITDVRFSP--SLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFH  649 (835)
Q Consensus       583 d~~---------t~~~i~~l~-~h~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~~~~~~~~-~~h~~~V~sl~fs  649 (835)
                      +..         +++.+..+. .|.+.|.+++|+|  ++.+|++++.||+|++||+.++.. +... ..|...|.+++|+
T Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~-~~~~~~~~~~~i~~~~~~  179 (343)
T 3lrv_A          101 YPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQ-YIVHSAKSDVEYSSGVLH  179 (343)
T ss_dssp             ETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCE-EEEECCCSSCCCCEEEEC
T ss_pred             EccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcE-EEEEecCCCCceEEEEEC
Confidence            665         555444443 6778999999999  999999999999999999998775 4444 4566689999999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCeee-eEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC---C
Q 003271          650 PSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG---H  721 (835)
Q Consensus       650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~---h  721 (835)
                      |++. +|++|+.||.|++||+++++.+ ..+.    ..+.+++|+|++.+|++++ ++.|++||+++.+.+..+..   |
T Consensus       180 pdg~-~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~  257 (343)
T 3lrv_A          180 KDSL-LLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIP  257 (343)
T ss_dssp             TTSC-EEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-
T ss_pred             CCCC-EEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccc
Confidence            9976 7889999999999999998876 5554    4599999999999999999 55999999998866544432   3


Q ss_pred             CCCe--EEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC---CCCEEEEEEcCCeEEEEE
Q 003271          722 KNQV--HSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP---TFPSLLVIGCYETLELWN  794 (835)
Q Consensus       722 ~~~I--~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp---dg~~L~sgs~dg~I~IwD  794 (835)
                      ...+  .+++|+|+|++|++++  |+.|+||++.....  .. ..    ..+..+.|.+   +...+++++.|+.+.++-
T Consensus       258 ~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~--~~-~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~  330 (343)
T 3lrv_A          258 EFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTK--NW-TK----DEESALCLQSDTADFTDMDVVCGDGGIAAIL  330 (343)
T ss_dssp             ----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTC--SE-EE----EEEEECCC----CCCCEEEEEEETTEEEEEE
T ss_pred             cccccceEEEECCCCCEEEEecCCCCcEEEEEEccccc--ce-Ee----cCceeEecCccccccceeEEEecCCceEEEE
Confidence            3334  3699999999999976  88999999976532  11 11    4567788888   888999999999888875


Q ss_pred             cCC
Q 003271          795 MTE  797 (835)
Q Consensus       795 l~~  797 (835)
                      ...
T Consensus       331 ~~~  333 (343)
T 3lrv_A          331 KTN  333 (343)
T ss_dssp             ECS
T ss_pred             ecC
Confidence            443

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.94  E-value=1.3e-24  Score=236.14  Aligned_cols=282  Identities=12%  Similarity=0.113  Sum_probs=196.1

Q ss_pred             eeEEEEEecCCCCC----EEEEEEeCCCC---EEEEEeCCCeEEEEEcCCC---eEEEEeccCCCCeEEEEECCCCC-EE
Q 003271          544 TFTEFQLIPASTSK----VESCHFSPDGK---LLATGGHDKKAVLWCTESF---TVKSTLEEHTQWITDVRFSPSLS-RL  612 (835)
Q Consensus       544 ~~~~i~~l~gH~~~----V~sl~fSpdg~---~Lasgs~Dg~I~VWd~~t~---~~i~~l~~h~~~V~sv~fspdg~-~L  612 (835)
                      .+..+..++...+.    |.++-|-.-|-   .+++++ ...|++|+..++   +.++++..|+.+|..|.|.||.. ++
T Consensus        24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  102 (356)
T 2w18_A           24 NLQLVSELKNPSGSCSVDVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLV  102 (356)
T ss_dssp             CEEEEEEECCCCSSCEEEEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCE
T ss_pred             eeeeeehhcCCCCCeEEEEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCccccee
Confidence            34455555554443    45555544332   466676 479999999988   89999999999999999999643 33


Q ss_pred             EEEECCC---eEEEEecCCC--C-ceeEEeecCCCCeEEEEEcCCCCcEEEEEe--CCCcEEEEEC-CCCeeeeEee---
Q 003271          613 ATSSADR---TVRVWDTENP--D-YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD--NNSEIRYWSI-NNGSCAGVFK---  680 (835)
Q Consensus       613 atgs~Dg---~I~IWDl~t~--~-~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs--~Dg~I~iwDl-~s~~~~~~~~---  680 (835)
                      .++-..-   .|+..-+...  . .......+|...|..+   ++ ..++.+++  .|+.|++|++ .+++.+..+.   
T Consensus       103 ~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~-g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~  178 (356)
T 2w18_A          103 CVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TK-RRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMP  178 (356)
T ss_dssp             EEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TT-TEEEEEESSSTTCEEEEEEECTTSCEEEEEEECC
T ss_pred             eeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CC-CcEEEecccCCCCcEEEEEECCCCceeeeeccCC
Confidence            3332211   1211111111  0 1122223444445444   44 44665643  6999999999 4476655443   


Q ss_pred             cCceEEEEec---CCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC---CCeEEEEEcCCCCEE------------EEEe-
Q 003271          681 SGATQMRFQP---RLGRILAAAIENYISILDVETQVCRLKLQGHK---NQVHSVCWNTSGEYL------------ASVS-  741 (835)
Q Consensus       681 ~~i~~l~fsp---~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---~~I~sl~fspdg~~L------------asgs-  741 (835)
                      ..+..++|++   ++..|++++.|++|+|||+++++++.++.+|.   ..+.+++|+|+|.++            ++|+ 
T Consensus       179 ~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~  258 (356)
T 2w18_A          179 PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSP  258 (356)
T ss_dssp             CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------C
T ss_pred             CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCC
Confidence            4588889999   77999999999999999999999999998654   367788999999887            4456 


Q ss_pred             CCeEEEEEcCCCCCcceEEEe-----ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCee-EEE
Q 003271          742 DELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVS-SLA  814 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~l-----~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~-~la  814 (835)
                      |++|++||..++   +++..+     .+|...+.+..++  +..+++++.|++|+|||+.+++++ ++.+|...+. .++
T Consensus       259 D~tIklWd~~tg---k~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~va  333 (356)
T 2w18_A          259 VFQLIVINPKTT---LSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVK  333 (356)
T ss_dssp             CEEEEEEETTTT---EEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEE
T ss_pred             CcEEEEEECCCC---EEEEEEEeeccCCCcceeEccccC--CCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEE
Confidence            889999999887   555443     2455555544444  778999999999999999999988 6677877655 689


Q ss_pred             EeCCCCEEEEEECCCcEEEeC
Q 003271          815 ASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       815 ~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |+|||++|++|+.|++|+|||
T Consensus       334 fSPDG~~LaSGS~D~TIklWd  354 (356)
T 2w18_A          334 WSGTDSHLLAGQKDGNIFVYH  354 (356)
T ss_dssp             ECSSSSEEEEECTTSCEEEEE
T ss_pred             ECCCCCEEEEEECCCcEEEec
Confidence            999999999999999999997

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=1.3e-24  Score=246.10  Aligned_cols=263  Identities=13%  Similarity=0.082  Sum_probs=213.3

Q ss_pred             EEecCCCCCEEEEEEeC--------------CCCEEEEEeCC------CeEEEEEcCCCeEEEEeccCCCCeEEEEECCC
Q 003271          549 QLIPASTSKVESCHFSP--------------DGKLLATGGHD------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPS  608 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSp--------------dg~~Lasgs~D------g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd  608 (835)
                      ..+.+|...|.++++++              .+..|++++.+      +.|++||++. .....+..|...|.+++|+|+
T Consensus       111 ~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spd  189 (415)
T 2hqs_A          111 NSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPD  189 (415)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTT
T ss_pred             eEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCC
Confidence            45677888888777764              25566666554      7999999975 445677789999999999999


Q ss_pred             CCEEEEEECCC---eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc--EEEEECCCCeeeeEee--c
Q 003271          609 LSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE--IRYWSINNGSCAGVFK--S  681 (835)
Q Consensus       609 g~~Latgs~Dg---~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~--I~iwDl~s~~~~~~~~--~  681 (835)
                      +++|++++.|+   .|++||+.+++.  ..+..|...+.+++|+|+++.++++++.++.  |++||+.+++......  .
T Consensus       190 g~~la~~s~~~~~~~i~~~d~~tg~~--~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~  267 (415)
T 2hqs_A          190 GSKLAYVTFESGRSALVIQTLANGAV--RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS  267 (415)
T ss_dssp             SSEEEEEECTTSSCEEEEEETTTCCE--EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSS
T ss_pred             CCEEEEEEecCCCcEEEEEECCCCcE--EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCC
Confidence            99999999885   999999998763  4567788899999999999988878876665  9999999887643332  3


Q ss_pred             CceEEEEecCCCEEEEEEcC-C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCC
Q 003271          682 GATQMRFQPRLGRILAAAIE-N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGS  754 (835)
Q Consensus       682 ~i~~l~fsp~~~~ll~~s~d-g--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D---g~I~IwDl~t~~  754 (835)
                      .+..++|+|++..|++++.+ +  .|++||+.+++.. .+..+...+.+++|+|+|++|++++ +   ..|++||+.++ 
T Consensus       268 ~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~-~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~-  345 (415)
T 2hqs_A          268 NNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATG-  345 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTC-
T ss_pred             cccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEE-EEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCC-
Confidence            47889999999999988864 4  6888899887643 4555777899999999999999887 4   48999999886 


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC
Q 003271          755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKTLTLSAHDKLVSSLAASTVNG  820 (835)
Q Consensus       755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~  820 (835)
                        .. ..+..+. .+.+++|+|++++|++++.++   .|++||+..+....+..|.+.|.+++|+|...
T Consensus       346 --~~-~~l~~~~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~~~~~l~~~~~~v~~~~~~~~~~  410 (415)
T 2hqs_A          346 --GV-QVLSSTF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPYLH  410 (415)
T ss_dssp             --CE-EECCCSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCCCC
T ss_pred             --CE-EEecCCC-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCCcEEEeeCCCCCCcCCccccccc
Confidence              33 3444444 899999999999999998877   89999999888889999999999999999654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.93  E-value=1.7e-25  Score=251.09  Aligned_cols=233  Identities=12%  Similarity=0.118  Sum_probs=176.8

Q ss_pred             CCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeC--------CCCEEEEEeC
Q 003271          504 DMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--------DGKLLATGGH  575 (835)
Q Consensus       504 ~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSp--------dg~~Lasgs~  575 (835)
                      ....++++|+.|++|++|.....              .......+..+.+|.+.|++++|+|        |+++||+|+.
T Consensus        99 ~~~~~las~~~d~~v~lw~~~~~--------------~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~  164 (393)
T 4gq1_A           99 VYSLFLACVCQDNTVRLIITKNE--------------TIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGD  164 (393)
T ss_dssp             EEEEEEEEEETTSCEEEEEEETT--------------EEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEET
T ss_pred             CCCCEEEEEeCCCcEEEEECCCC--------------ccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEEC
Confidence            34468999999999999944322              1112234556789999999999998        8899999999


Q ss_pred             CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCC-CEEEEEECCCeEEEEecCCCCcee---------------------
Q 003271          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSL---------------------  633 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~---------------------  633 (835)
                      |++|+|||+.++..+..+..|...|.+++|+|++ .+|++++.|++|++||+.++....                     
T Consensus       165 D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~  244 (393)
T 4gq1_A          165 DCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPL  244 (393)
T ss_dssp             TSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGG
T ss_pred             CCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccc
Confidence            9999999999988888888899999999999986 489999999999999998765311                     


Q ss_pred             ---EEeecCCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---------------------ceEEEE
Q 003271          634 ---RTFTGHSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---------------------ATQMRF  688 (835)
Q Consensus       634 ---~~~~~h~~~V~sl~fs-p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---------------------i~~l~f  688 (835)
                         ....+|...|.++.|+ +++. .+++++.|+.|++||+..+.....+...                     .....+
T Consensus       245 ~~~~~~~~~~~~v~~v~~~~~dg~-~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (393)
T 4gq1_A          245 VNTCHSSGIASSLANVRWIGSDGS-GILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACP  323 (393)
T ss_dssp             C------CCSSSCSEEEEETTTTC-EEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEE
T ss_pred             eeeeecccccccceeeeeecCCCC-EEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEE
Confidence               1224678889999997 5655 6779999999999999876654333211                     112233


Q ss_pred             ec-CCCEE-EEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcC
Q 003271          689 QP-RLGRI-LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIG  751 (835)
Q Consensus       689 sp-~~~~l-l~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~  751 (835)
                      ++ .++.+ ++++.|+.|++||+.++..+..+..|...|.+++|+|||++|++++++.+.+|.+.
T Consensus       324 ~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafspdG~~LA~as~~Gv~lvrL~  388 (393)
T 4gq1_A          324 HPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWHQDGSHLAIATEGSVLLTRLM  388 (393)
T ss_dssp             CSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEECTTSSEEEEEESSEEEEEEEG
T ss_pred             ccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCeEEEEEe
Confidence            33 34444 45567899999999999888888889999999999999999999998878888764

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.93  E-value=3e-24  Score=242.98  Aligned_cols=271  Identities=15%  Similarity=0.169  Sum_probs=216.1

Q ss_pred             CCEEEEEEeCCCC-EEEEEe----CCC----eEEEEEc--CCCeEE--EEeccCCCCeEEEEECC--------------C
Q 003271          556 SKVESCHFSPDGK-LLATGG----HDK----KAVLWCT--ESFTVK--STLEEHTQWITDVRFSP--------------S  608 (835)
Q Consensus       556 ~~V~sl~fSpdg~-~Lasgs----~Dg----~I~VWd~--~t~~~i--~~l~~h~~~V~sv~fsp--------------d  608 (835)
                      ..|...+|++.|. ++++|+    .||    .|+|||+  .+++.+  ..+.+|...+..+++++              .
T Consensus        63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~  142 (415)
T 2hqs_A           63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAF  142 (415)
T ss_dssp             GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCT
T ss_pred             cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcC
Confidence            4677888888775 566776    467    8999999  888877  55888988888877764              2


Q ss_pred             CCEEEEEECC------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCeeeeEe
Q 003271          609 LSRLATSSAD------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGSCAGVF  679 (835)
Q Consensus       609 g~~Latgs~D------g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D---g~I~iwDl~s~~~~~~~  679 (835)
                      +..++.++.+      +.|++||++...  .+.+..|...|.+++|+|+++.++ +++.+   ..|++||+.++++....
T Consensus       143 ~~~l~~~s~~~~~~~~~~i~i~d~~g~~--~~~l~~~~~~v~~~~~Spdg~~la-~~s~~~~~~~i~~~d~~tg~~~~l~  219 (415)
T 2hqs_A          143 RTRIAYVVQTNGGQFPYELRVSDYDGYN--QFVVHRSPQPLMSPAWSPDGSKLA-YVTFESGRSALVIQTLANGAVRQVA  219 (415)
T ss_dssp             TCEEEEEEECSSSSCCEEEEEEETTSCS--CEEEEEESSCEEEEEECTTSSEEE-EEECTTSSCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEEecCCCCccceEEEEcCCCCC--CEEEeCCCCcceeeEEcCCCCEEE-EEEecCCCcEEEEEECCCCcEEEee
Confidence            5566666554      799999998533  577788999999999999988555 55555   49999999998876443


Q ss_pred             --ecCceEEEEecCCCEEEE-EEcCC--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEc
Q 003271          680 --KSGATQMRFQPRLGRILA-AAIEN--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSI  750 (835)
Q Consensus       680 --~~~i~~l~fsp~~~~ll~-~s~dg--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl  750 (835)
                        ...+.+++|+|++..|++ ++.++  .|++||+.+++. ..+..|...+.+++|+|||++|++++  ++  .|++||+
T Consensus       220 ~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~  298 (415)
T 2hqs_A          220 SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNI  298 (415)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEEC
Confidence              245789999999998884 44454  499999998876 56677888999999999999998887  34  7888898


Q ss_pred             CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          751 GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       751 ~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                      .++.    ...+..+...+.+++|+|+|++|++++.+   ..|++||+.++++..+..|. .+.+++|+|+|++|++++.
T Consensus       299 ~~~~----~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          299 NGGA----PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTF-LDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             TSSC----CEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSS-SCEEEEECTTSSEEEEEEE
T ss_pred             CCCC----EEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCCC-CcCCeEEcCCCCEEEEEEc
Confidence            8762    23455567788999999999999988875   48999999999988777765 8999999999999998887


Q ss_pred             CC---cEEEeC
Q 003271          828 DK---CVKIWK  835 (835)
Q Consensus       828 DG---~V~IWd  835 (835)
                      |+   .|++||
T Consensus       374 ~~~~~~l~~~d  384 (415)
T 2hqs_A          374 QGMGSVLNLVS  384 (415)
T ss_dssp             ETTEEEEEEEE
T ss_pred             CCCccEEEEEE
Confidence            77   688885

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.92  E-value=1.7e-23  Score=227.21  Aligned_cols=250  Identities=10%  Similarity=0.053  Sum_probs=178.1

Q ss_pred             ccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe-CC---CeEEEEEcCCC----eEEEEeccCCCCeEEEEECCCC
Q 003271          538 EVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HD---KKAVLWCTESF----TVKSTLEEHTQWITDVRFSPSL  609 (835)
Q Consensus       538 ~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs-~D---g~I~VWd~~t~----~~i~~l~~h~~~V~sv~fspdg  609 (835)
                      ...++..++.++++..|..+|..+.+.||..-|++.. ..   +.|+..-+...    .......+|...|.++   +++
T Consensus        69 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l---~~g  145 (356)
T 2w18_A           69 KALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGNLEIREIRALFCSSDDESEKQVLLKSGNIKAVLGL---TKR  145 (356)
T ss_dssp             EESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECSSSEEEEEEECC------CCEEEEEEEEEEEEEEE---TTT
T ss_pred             ccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeeccccccceEEEEECCCccccccEEEeCCCeEEEEec---CCC
Confidence            4445566778888888888888888888654332221 11   11111111111    1111113344445444   455


Q ss_pred             CEEEEEE--CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCeeeeEeec----
Q 003271          610 SRLATSS--ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----  681 (835)
Q Consensus       610 ~~Latgs--~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----  681 (835)
                      +++.+++  .|+.|++|++......+..+..|...+..++|++  ....+|++++.|++|+|||++++++++++.+    
T Consensus       146 ~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~  225 (356)
T 2w18_A          146 RLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSY  225 (356)
T ss_dssp             EEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC--
T ss_pred             cEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcc
Confidence            5555543  5899999999654445677788999999999988  2245888999999999999999999998864    


Q ss_pred             --CceEEEEecCCCEE------------EEEEcCCcEEEEECCCCeEEEEE-----cCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          682 --GATQMRFQPRLGRI------------LAAAIENYISILDVETQVCRLKL-----QGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       682 --~i~~l~fsp~~~~l------------l~~s~dg~I~IwDl~t~~~i~~l-----~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                        .+.+++|+|++..+            ++++.|++|++||..+++.+..+     .+|...+.+.+++  +.++++++ 
T Consensus       226 v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s--g~~lASgS~  303 (356)
T 2w18_A          226 QASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK--DHCAAAILT  303 (356)
T ss_dssp             -CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCCCCEEEEEEE--TTEEEEEET
T ss_pred             eeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCcceeEccccC--CCEEEEEcC
Confidence              25577899998876            44677899999999999887765     3676666555554  88899998 


Q ss_pred             CCeEEEEEcCCCCCcceEEEeecCCCceE-EEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          742 DELVRVWSIGSGSKGECIHELSCTGNKFH-SCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~-sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      |++|+|||+.++   +++.++.+|...+. +++|+|++++|++|+.|++|+|||+
T Consensus       304 DgTIkIWDl~tG---k~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          304 SGTIAIWDLLLG---QCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             TSCEEEEETTTC---SEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred             CCcEEEEECCCC---cEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence            999999999998   88999988877655 5899999999999999999999996

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.92  E-value=2.2e-22  Score=219.29  Aligned_cols=266  Identities=10%  Similarity=0.032  Sum_probs=215.2

Q ss_pred             CCEEEEEEeCCCCEEEEEeC-------CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecC
Q 003271          556 SKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTE  627 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~-------Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~  627 (835)
                      ..+..++|+|++++|++++.       ++.|.+||..+++.+..+... ..+.+++|+|++++++++ ..++.|.+||+.
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~  119 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHND-LKPFGATINNTTQTLWFGNTVNSAVTAIDAK  119 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEES-SCCCSEEEETTTTEEEEEETTTTEEEEEETT
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecC-CCcceEEECCCCCEEEEEecCCCEEEEEeCC
Confidence            45889999999999888774       568999999999988888643 457889999999966555 457999999999


Q ss_pred             CCCceeEEeecCCC---------CeEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCE
Q 003271          628 NPDYSLRTFTGHST---------TVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGR  694 (835)
Q Consensus       628 t~~~~~~~~~~h~~---------~V~sl~fsp~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~  694 (835)
                      +++. +..+..+..         .+.+++|+|+++.+++++ +.++.|.+||+.+++.+..+.   ..+..++|+|+++.
T Consensus       120 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~  198 (353)
T 3vgz_A          120 TGEV-KGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKR  198 (353)
T ss_dssp             TCCE-EEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTE
T ss_pred             CCee-EEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCE
Confidence            8774 444444332         278899999998777666 458899999999999888776   23788999999999


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEEcC----CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271          695 ILAAAIENYISILDVETQVCRLKLQG----HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNK  768 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l~~----h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~  768 (835)
                      +++++.++.|.+||+.+++.+..+..    +...+.+++|+|++++|++++  ++.|.+||+.++   +.+..+....  
T Consensus       199 l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~---~~~~~~~~~~--  273 (353)
T 3vgz_A          199 LYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNG---NILAKVAAPE--  273 (353)
T ss_dssp             EEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTC---CEEEEEECSS--
T ss_pred             EEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCC---cEEEEEEcCC--
Confidence            99999999999999999988877664    556788999999999887776  589999999887   5555555433  


Q ss_pred             eEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271          769 FHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       769 V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D  828 (835)
                      ...++|+|+++++++++ .++.|.+||+.+++.+........+.+++|+|++++|+.+..+
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPTHPNSLALSADGKTLYVSVKQ  334 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCSEEEEEEECTTSCEEEEEEEC
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCCCCCeEEEcCCCCEEEEEEcc
Confidence            25689999999887777 5789999999999988555556688999999999977666654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.92  E-value=3.2e-23  Score=242.84  Aligned_cols=266  Identities=9%  Similarity=0.063  Sum_probs=214.0

Q ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec--CCCCceeEEeecC
Q 003271          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT--ENPDYSLRTFTGH  639 (835)
Q Consensus       562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl--~t~~~~~~~~~~h  639 (835)
                      +|+|++.++++++.|++|.+||..+++++.++..+.. +.+++|+||+++|++++.|++|++||+  .+.+ ++..+. +
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~-~~~~i~-~  220 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPT-KVAEIK-I  220 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCE-EEEEEE-C
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCc-EEEEEe-c
Confidence            3788999999999999999999999999999974433 899999999999999999999999999  6654 355555 4


Q ss_pred             CCCeEEEEEcC----CCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------------CceEEEEecCCCEEEEEE-c
Q 003271          640 STTVMSLDFHP----SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------------GATQMRFQPRLGRILAAA-I  700 (835)
Q Consensus       640 ~~~V~sl~fsp----~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------------~i~~l~fsp~~~~ll~~s-~  700 (835)
                      ...+..++|+|    +++.+++++..++.|.+||..+++++..+..              .+..+.+++++..+++.. .
T Consensus       221 g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~  300 (543)
T 1nir_A          221 GIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKE  300 (543)
T ss_dssp             CSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETT
T ss_pred             CCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECC
Confidence            56689999999    9987776666799999999999998877653              356789999887766655 5


Q ss_pred             CCcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec----CCCceEEE
Q 003271          701 ENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC----TGNKFHSC  772 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~----~~~~V~sv  772 (835)
                      ++.|.+||+.+.+.+.  .+. +...+.++.|+|+|++|++++  +++|.+||+.++   +++..+..    |......+
T Consensus       301 ~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg---~l~~~i~~g~~ph~g~g~~~  376 (543)
T 1nir_A          301 TGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANF  376 (543)
T ss_dssp             TTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSBCCTTCEEE
T ss_pred             CCeEEEEEecCCCcceeEEec-cCcCccCceECCCCCEEEEEecCCCeEEEEECCCC---eEEEeeccCCCCCCCCCccc
Confidence            6999999998764332  343 667788999999999877665  889999999988   66666654    44333333


Q ss_pred             EEeCCCCEEEEEE--cCCeEEEEEcCC-------CcEE-EeccCCCCeeEEEEeCCCCEEEEEE-------CCCcEEEeC
Q 003271          773 VFHPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASAS-------HDKCVKIWK  835 (835)
Q Consensus       773 ~fspdg~~L~sgs--~dg~I~IwDl~~-------~~~~-~l~~h~~~V~~la~spdg~~LaSgs-------~DG~V~IWd  835 (835)
                       ++|++..+++++  .+++|.|||+.+       .+++ ++..|...+..++|+|++++|++++       .+++|.|||
T Consensus       377 -~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d  455 (543)
T 1nir_A          377 -VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  455 (543)
T ss_dssp             -EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEE
T ss_pred             -CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEE
Confidence             578744444444  478999999988       7777 7778888899999999999999987       377999997

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.92  E-value=1.5e-22  Score=219.34  Aligned_cols=271  Identities=7%  Similarity=0.134  Sum_probs=203.1

Q ss_pred             EEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecC
Q 003271          562 HFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH  639 (835)
Q Consensus       562 ~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h  639 (835)
                      .|.+++.+ +++++.++.|.+||+.+++.+..+..+...+ +++|+|++++|++++. ++.|.+||+.+++.....+..+
T Consensus         4 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~   82 (331)
T 3u4y_A            4 MFQTTSNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEG   82 (331)
T ss_dssp             ---CCCCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEEC
T ss_pred             eEcCCCCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccC
Confidence            45565555 6777889999999999999988887777777 9999999997777666 8899999999877535566666


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEc-CCc-EEEEECCCC
Q 003271          640 STTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAI-ENY-ISILDVETQ  712 (835)
Q Consensus       640 ~~~V~sl~fsp~g~~ll~sgs~D-g--~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~-dg~-I~IwDl~t~  712 (835)
                      ..++.+++|+|+++.++ ++..+ +  .|++||+.+++.+..+..  ....++|+|+++++++++. ++. |.+|++...
T Consensus        83 ~~~~~~~~~s~dg~~l~-~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAV-TVTGLNHPFNMQSYSFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEE-ECCCSSSSCEEEEEETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEE-EecCCCCcccEEEEECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            66666699999988666 44444 3  899999999998877764  3688999999987776655 478 999998753


Q ss_pred             eEE----EEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271          713 VCR----LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC  786 (835)
Q Consensus       713 ~~i----~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~  786 (835)
                      ..+    .........+.+++|+|+|++|+++.  ++.|++||+.++.....+..+.. ...+..++|+|++++|++++.
T Consensus       162 g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          162 GVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             CCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECTTSSEEEEECS
T ss_pred             CcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECCCCCEEEEEEc
Confidence            222    12223456689999999999776655  78999999988743222555554 466788999999998877765


Q ss_pred             -CCeEEEEEcCCCcEE---EeccC----CCC---eeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271          787 -YETLELWNMTENKTL---TLSAH----DKL---VSSLAASTVNGMVASAS-HDKCVKIWK  835 (835)
Q Consensus       787 -dg~I~IwDl~~~~~~---~l~~h----~~~---V~~la~spdg~~LaSgs-~DG~V~IWd  835 (835)
                       ++.|.+||+.+++..   .+..+    ...   +..++|+||+++|++++ .++.|.|||
T Consensus       241 ~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d  301 (331)
T 3u4y_A          241 STVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFT  301 (331)
T ss_dssp             SEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEE
Confidence             668999999998873   11111    222   35589999999886655 466999996

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.92  E-value=2.4e-22  Score=217.53  Aligned_cols=264  Identities=9%  Similarity=0.140  Sum_probs=194.1

Q ss_pred             EEEEEeCCCeEEEEEcC-CC--eEEEEeccCCCCeEEEEECCCCCEEEEEECC-CeEEEEecC--CCCce-eEEeecCCC
Q 003271          569 LLATGGHDKKAVLWCTE-SF--TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTE--NPDYS-LRTFTGHST  641 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~-t~--~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-g~I~IWDl~--t~~~~-~~~~~~h~~  641 (835)
                      ++++++.|+.|++|+++ ++  +.+..+ .|...+.+++|+|++++|++++.+ +.|.+|++.  ++... +..+..+ .
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~   84 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGALTLTQVV-DVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALP-G   84 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECS-S
T ss_pred             EEEeCCCCCeEEEEEECCCCcEEEeeeE-ecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccC-C
Confidence            34455789999999995 33  334443 477789999999999999998887 999999998  44432 2334433 3


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEECC---CCeeeeEee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCC-CeE
Q 003271          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN---NGSCAGVFK--SGATQMRFQPRLGRILAAA-IENYISILDVET-QVC  714 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~---s~~~~~~~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t-~~~  714 (835)
                      .+.+++|+|+++.+++++..++.|++||+.   ..+.+..+.  ..+..++|+|+++++++++ .++.|.+||+.+ ++.
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~  164 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHL  164 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCE
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCce
Confidence            789999999998777777778999999994   333444443  3478899999999999888 789999999987 644


Q ss_pred             EE----EEcC-CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CcceEEEee---cC---CCceEEEEEeCCCCE
Q 003271          715 RL----KLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELS---CT---GNKFHSCVFHPTFPS  780 (835)
Q Consensus       715 i~----~l~~-h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~-~~~~i~~l~---~~---~~~V~sv~fspdg~~  780 (835)
                      ..    .+.. ....+.+++|+|++++|++++  ++.|.+||+.... ....+..+.   ..   ...+..++|+|++++
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~  244 (343)
T 1ri6_A          165 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRH  244 (343)
T ss_dssp             EEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSE
T ss_pred             eeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCE
Confidence            32    2222 345788999999999776655  8899999996421 112222222   11   235678999999998


Q ss_pred             EEEEE-cCCeEEEEEcC--CCc--EE-EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271          781 LLVIG-CYETLELWNMT--ENK--TL-TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  835 (835)
Q Consensus       781 L~sgs-~dg~I~IwDl~--~~~--~~-~l~~h~~~V~~la~spdg~~LaSgs-~DG~V~IWd  835 (835)
                      |+++. .++.|.+||+.  ++.  .+ .+..+. .+.+++|+|++++|++++ .|+.|.||+
T Consensus       245 l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~v~v~~  305 (343)
T 1ri6_A          245 LYACDRTASLITVFSVSEDGSVLSKEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYE  305 (343)
T ss_dssp             EEEEETTTTEEEEEEECTTSCCEEEEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             EEEEecCCCEEEEEEEcCCCCceEEeeeecCCC-ccceEEECCCCCEEEEecCCCCeEEEEE
Confidence            88666 67899999998  333  33 333343 489999999999888887 689999993

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=6e-23  Score=248.30  Aligned_cols=273  Identities=14%  Similarity=0.110  Sum_probs=213.2

Q ss_pred             CCCEEEEEEeCCCCEEEEEeC-CC-----eEEEEEcCCCeEEEEeccCCC------------------------CeEEEE
Q 003271          555 TSKVESCHFSPDGKLLATGGH-DK-----KAVLWCTESFTVKSTLEEHTQ------------------------WITDVR  604 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~-Dg-----~I~VWd~~t~~~i~~l~~h~~------------------------~V~sv~  604 (835)
                      ...|.+++|||||++|++++. |+     .|++||+.+++....+..+..                        .|.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            456999999999999999998 88     899999999988777765433                        388999


Q ss_pred             ECCCCCEEEEEECCCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC
Q 003271          605 FSPSLSRLATSSADRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG  682 (835)
Q Consensus       605 fspdg~~Latgs~Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~  682 (835)
                      |+|||++|++++. +.|++||+.++.  . ...+..|...+.+++|+|+|+.+++ ++ ++.|++||+.+++.......+
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~-~~~l~~~~~~~~~~~~SPDG~~la~-~~-~~~i~~~d~~~g~~~~~~~~~  191 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAA-VRQLTHGEGFATDAKLSPKGGFVSF-IR-GRNLWVIDLASGRQMQLTADG  191 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTS-CCBCCCSSSCEEEEEECTTSSEEEE-EE-TTEEEEEETTTTEEEECCCCC
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcce-EEEcccCCcccccccCCCCCCEEEE-Ee-CCcEEEEecCCCCEEEeccCC
Confidence            9999999999986 899999999862  2 4556778888999999999986554 44 569999999988776544322


Q ss_pred             -------------------ceEEEEecCCCEEEEEEcCC---------------------------------cEEEEECC
Q 003271          683 -------------------ATQMRFQPRLGRILAAAIEN---------------------------------YISILDVE  710 (835)
Q Consensus       683 -------------------i~~l~fsp~~~~ll~~s~dg---------------------------------~I~IwDl~  710 (835)
                                         +..++|+|++++|++++.|+                                 .|++||+.
T Consensus       192 ~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~  271 (741)
T 2ecf_A          192 STTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPA  271 (741)
T ss_dssp             CSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSS
T ss_pred             ccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECC
Confidence                               36799999999999988765                                 78999998


Q ss_pred             C-CeEEEEEc--CCCCCeEEEEEcCCCCEEEEEe------CCeEEEEEcCCCCCcceEEEeecCCC----ceEEEEEeCC
Q 003271          711 T-QVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS------DELVRVWSIGSGSKGECIHELSCTGN----KFHSCVFHPT  777 (835)
Q Consensus       711 t-~~~i~~l~--~h~~~I~sl~fspdg~~Lasgs------Dg~I~IwDl~t~~~~~~i~~l~~~~~----~V~sv~fspd  777 (835)
                      + ++......  .|...+.+++| |||++|+++.      +..|++||+.++   .+...+..+..    .+..++|+|+
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~spd  347 (741)
T 2ecf_A          272 EQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASN---QQRVLAHETSPTWVPLHNSLRFLDD  347 (741)
T ss_dssp             TTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTC---CEEEEEEEECSSCCCCCSCCEECTT
T ss_pred             CCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCC---ceEEEEEcCCCCcCCcCCceEECCC
Confidence            8 77655443  37778999999 9999998765      348999999987   34444433332    3468899999


Q ss_pred             CCEEEEEEcCCeEEEEEcC-CCcEEEeccCCCCeeEE-EEeCCCCEEEE-EECCC--cEEEeC
Q 003271          778 FPSLLVIGCYETLELWNMT-ENKTLTLSAHDKLVSSL-AASTVNGMVAS-ASHDK--CVKIWK  835 (835)
Q Consensus       778 g~~L~sgs~dg~I~IwDl~-~~~~~~l~~h~~~V~~l-a~spdg~~LaS-gs~DG--~V~IWd  835 (835)
                      |+++++++.++.+.||.+. ++....+..|...|..+ .|+|+++.|+. ++.|+  .++||+
T Consensus       348 g~~~~~~~~~g~~~l~~~~~~~~~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~  410 (741)
T 2ecf_A          348 GSILWSSERTGFQHLYRIDSKGKAAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYA  410 (741)
T ss_dssp             SCEEEEECTTSSCEEEEECSSSCEEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEE
T ss_pred             CeEEEEecCCCccEEEEEcCCCCeeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEE
Confidence            9988888888866666554 23355777888888887 59999987754 44555  888884

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=2.4e-22  Score=243.05  Aligned_cols=270  Identities=11%  Similarity=0.068  Sum_probs=203.7

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      .|.+++|||||++|++++. +.|++||+.++.  ....+..|...+.+++|+|||++|++++ ++.|++||+.++.. ..
T Consensus       110 ~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~-~~  186 (741)
T 2ecf_A          110 GIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQ-MQ  186 (741)
T ss_dssp             ESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEE-EE
T ss_pred             CcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCE-EE
Confidence            4789999999999999986 999999999872  3445677888999999999999999987 46899999987653 33


Q ss_pred             EeecCCCC----------------eEEEEEcCCCCcEEEEEeCCC--------------------------------cEE
Q 003271          635 TFTGHSTT----------------VMSLDFHPSKEDLLCSCDNNS--------------------------------EIR  666 (835)
Q Consensus       635 ~~~~h~~~----------------V~sl~fsp~g~~ll~sgs~Dg--------------------------------~I~  666 (835)
                      ....+...                +.++.|+|+|+.++++...++                                .|+
T Consensus       187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            33333322                478999999987765544321                                789


Q ss_pred             EEECCC-CeeeeEee-----cCceEEEEecCCCEEEEEEc-----CCcEEEEECCCCeEEEEEcCCCC----CeEEEEEc
Q 003271          667 YWSINN-GSCAGVFK-----SGATQMRFQPRLGRILAAAI-----ENYISILDVETQVCRLKLQGHKN----QVHSVCWN  731 (835)
Q Consensus       667 iwDl~s-~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~-----dg~I~IwDl~t~~~i~~l~~h~~----~I~sl~fs  731 (835)
                      +||+.+ ++......     ..+..++| |++..|++++.     +..|++||+.++++...+..+..    .+.+++|+
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s  345 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL  345 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence            999988 77654432     23778999 99999998775     46799999999988776665443    45689999


Q ss_pred             CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE-EEeCCCCEEEEEEcCC---eEEEEEcCC-Cc-EEEec
Q 003271          732 TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE---TLELWNMTE-NK-TLTLS  804 (835)
Q Consensus       732 pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv-~fspdg~~L~sgs~dg---~I~IwDl~~-~~-~~~l~  804 (835)
                      |||+++++++ |+.++||.+....  . ...+..+...+..+ .|+|+++.|++.+.++   .++||++.. +. ...+.
T Consensus       346 pdg~~~~~~~~~g~~~l~~~~~~~--~-~~~l~~~~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~  422 (741)
T 2ecf_A          346 DDGSILWSSERTGFQHLYRIDSKG--K-AAALTHGNWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPLQGGQPQRLS  422 (741)
T ss_dssp             TTSCEEEEECTTSSCEEEEECSSS--C-EEESCCSSSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEETTCCCCEECC
T ss_pred             CCCeEEEEecCCCccEEEEEcCCC--C-eeeeeecceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEcCCCCeeecc
Confidence            9999888877 8888888776321  3 66777777788887 5999999887666544   889998753 44 33444


Q ss_pred             cCCCCeeEEEEeCCCCEEEEEECC----CcEEEe
Q 003271          805 AHDKLVSSLAASTVNGMVASASHD----KCVKIW  834 (835)
Q Consensus       805 ~h~~~V~~la~spdg~~LaSgs~D----G~V~IW  834 (835)
                      . ...+..++|+||+++|+....+    ..+.+|
T Consensus       423 ~-~~~~~~~~~spdg~~l~~~~~~~~~p~~~~l~  455 (741)
T 2ecf_A          423 K-APGMHSASFARNASVYVDSWSNNSTPPQIELF  455 (741)
T ss_dssp             C-SCSEEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred             c-CCCceEEEECCCCCEEEEEecCCCCCCeEEEE
Confidence            4 6778899999999988766543    345555

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.91  E-value=1.8e-21  Score=210.60  Aligned_cols=293  Identities=12%  Similarity=0.096  Sum_probs=205.4

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCC-CeEEEEEcC-
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHD-KKAVLWCTE-  585 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~-  585 (835)
                      ++++++.|+.|.+|.....               + ....+.. ..|...+.+++|+|+|++|++++.+ +.|.+|+++ 
T Consensus         7 l~~~~~~~~~v~~~~~~~~---------------~-~~~~~~~-~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~   69 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHE---------------G-ALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   69 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTT---------------S-CEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEeCCCCCeEEEEEECCC---------------C-cEEEeee-EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecC
Confidence            4455577899999944221               0 1122222 2466789999999999999988876 999999997 


Q ss_pred             -CCe--EEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCC--ceeEEeecCCCCeEEEEEcCCCCcEEEEE
Q 003271          586 -SFT--VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPD--YSLRTFTGHSTTVMSLDFHPSKEDLLCSC  659 (835)
Q Consensus       586 -t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~--~~~~~~~~h~~~V~sl~fsp~g~~ll~sg  659 (835)
                       +++  .+..+..+. .+.+++|+|++++|++++. ++.|.+||+.++.  .....+. ....+.+++|+|+++.+++++
T Consensus        70 ~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~dg~~l~~~~  147 (343)
T 1ri6_A           70 DDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-GLDGCHSANISPDNRTLWVPA  147 (343)
T ss_dssp             TTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-CCTTBCCCEECTTSSEEEEEE
T ss_pred             CCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCcccccccccc-CCCCceEEEECCCCCEEEEec
Confidence             544  445555444 7899999999998877765 8899999995222  1223333 345689999999998777666


Q ss_pred             eCCCcEEEEECCC-Ceeee----Eee----cCceEEEEecCCCEEEEEE-cCCcEEEEECCC--CeE--EEEEcC---C-
Q 003271          660 DNNSEIRYWSINN-GSCAG----VFK----SGATQMRFQPRLGRILAAA-IENYISILDVET--QVC--RLKLQG---H-  721 (835)
Q Consensus       660 s~Dg~I~iwDl~s-~~~~~----~~~----~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t--~~~--i~~l~~---h-  721 (835)
                      ..++.|++||+.+ ++...    .+.    ..+..++|+|++.++++++ .++.|.+||+..  ++.  ...+..   . 
T Consensus       148 ~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~  227 (343)
T 1ri6_A          148 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENF  227 (343)
T ss_dssp             GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTC
T ss_pred             CCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccc
Confidence            5899999999987 65432    122    2467799999999887776 679999999953  322  222221   1 


Q ss_pred             --CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC-CCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEc
Q 003271          722 --KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNM  795 (835)
Q Consensus       722 --~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~-~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl  795 (835)
                        ...+.+++|+|+|++|+++.  ++.|++||+... .....+..+..+.. +..++|+|++++|++++ .++.|.+|++
T Consensus       228 ~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~v~~~  306 (343)
T 1ri6_A          228 SDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQ-PRGFNVDHSGKYLIAAGQKSHHISVYEI  306 (343)
T ss_dssp             CSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSS-CCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred             cccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCc-cceEEECCCCCEEEEecCCCCeEEEEEE
Confidence              24577899999999887554  889999999842 12244555554444 88999999999999888 5789999954


Q ss_pred             --CCCcEE--EeccCCCCeeEEEEeCCCC
Q 003271          796 --TENKTL--TLSAHDKLVSSLAASTVNG  820 (835)
Q Consensus       796 --~~~~~~--~l~~h~~~V~~la~spdg~  820 (835)
                        .+++..  ..........+++|.++.+
T Consensus       307 d~~~g~~~~~~~~~~g~~p~~i~~~~~~~  335 (343)
T 1ri6_A          307 VGEQGLLHEKGRYAVGQGPMWVVVNAHEG  335 (343)
T ss_dssp             ETTTTEEEEEEEEECSSSCCEEEEEEEC-
T ss_pred             cCCCceeeEccccccCCCCeeEEEEcccC
Confidence              466543  2222235677888887654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=2e-22  Score=212.21  Aligned_cols=252  Identities=11%  Similarity=0.079  Sum_probs=193.5

Q ss_pred             EEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC-CCceeEEeecC-CCCeEEEEEc
Q 003271          572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-PDYSLRTFTGH-STTVMSLDFH  649 (835)
Q Consensus       572 sgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t-~~~~~~~~~~h-~~~V~sl~fs  649 (835)
                      .++.|+.|++||+.+++... +..|...|.+++|+|++++|++++ ++.|++||+.+ +.. ......+ ...|.+++|+
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~-~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~s   93 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV-VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP-EKVDTGFATICNNDHGIS   93 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE-EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC-EECCCTTCCCBCSCCEEC
T ss_pred             CCCcceeEEEEeCCCCceee-eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc-eEeccccccccccceEEC
Confidence            34678999999999988764 446889999999999999999987 78999999998 654 4444444 4678999999


Q ss_pred             CCCCcEEEEEe-CC--CcEEEEECCCCeeeeEe-ecCceEEEEecCCCEEE-EEEcCCcEEEEECC--CCeEEEEEcCCC
Q 003271          650 PSKEDLLCSCD-NN--SEIRYWSINNGSCAGVF-KSGATQMRFQPRLGRIL-AAAIENYISILDVE--TQVCRLKLQGHK  722 (835)
Q Consensus       650 p~g~~ll~sgs-~D--g~I~iwDl~s~~~~~~~-~~~i~~l~fsp~~~~ll-~~s~dg~I~IwDl~--t~~~i~~l~~h~  722 (835)
                      |+++.+++++. .+  ..|.+|++.++...... ...+..++|+|++..++ ++..++.+.||+++  ++. ...+..+.
T Consensus        94 pdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~  172 (297)
T 2ojh_A           94 PDGALYAISDKVEFGKSAIYLLPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGV-ETRLTHGE  172 (297)
T ss_dssp             TTSSEEEEEECTTTSSCEEEEEETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCC-EEECCCSS
T ss_pred             CCCCEEEEEEeCCCCcceEEEEECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCc-ceEcccCC
Confidence            99886654442 22  45555565555432222 13477889999999887 66788988888853  443 45566688


Q ss_pred             CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----------Ce
Q 003271          723 NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----------ET  789 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----------g~  789 (835)
                      ..+.+++|+|++++|++++  ++.++||++....  ..+..+..+...+..++|+|++++|++++.+           ..
T Consensus       173 ~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~  250 (297)
T 2ojh_A          173 GRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDG--SSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVR  250 (297)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTS--SCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEE
T ss_pred             CccccceECCCCCEEEEEecCCCCccEEEECCCC--CCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceE
Confidence            8999999999999887665  7889999886321  4556677777889999999999999988876           46


Q ss_pred             EEEEEcCCCcEE---EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271          790 LELWNMTENKTL---TLSAHDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       790 I~IwDl~~~~~~---~l~~h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      |++||+.+++..   .+..|...|.+++|+|++++|++++.|.
T Consensus       251 l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          251 VQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             EEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            999999988754   3447888999999999999988887664

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=1.3e-21  Score=211.81  Aligned_cols=290  Identities=11%  Similarity=0.086  Sum_probs=210.7

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeC-CCeEEEEEc
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGH-DKKAVLWCT  584 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~  584 (835)
                      ..++++.+.++.|.+|.....                   .....+..+...+ +++|+|||++|++++. ++.|.+||+
T Consensus        10 ~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~   69 (331)
T 3u4y_A           10 NFGIVVEQHLRRISFFSTDTL-------------------EILNQITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIET   69 (331)
T ss_dssp             CEEEEEEGGGTEEEEEETTTC-------------------CEEEEEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEEC
T ss_pred             CEEEEEecCCCeEEEEeCccc-------------------ceeeeEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEEC
Confidence            456778888899999943222                   1223334455667 9999999997766665 899999999


Q ss_pred             CCCeE-EEEeccCCCCeEEEEECCCCCEEEEEECCC---eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEe
Q 003271          585 ESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       585 ~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~Dg---~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                      .+++. ...+..+..++.+++|+|++++|+++..++   .|.+||+.+++. +..+. +...+.+++|+|+++.+++++.
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~-~~~~~-~~~~~~~~~~spdg~~l~~~~~  147 (331)
T 3u4y_A           70 QLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKF-ISTIP-IPYDAVGIAISPNGNGLILIDR  147 (331)
T ss_dssp             SSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEE-EEEEE-CCTTEEEEEECTTSSCEEEEEE
T ss_pred             CCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCe-EEEEE-CCCCccceEECCCCCEEEEEec
Confidence            99887 777777777766699999999999655553   899999998664 44444 3456799999999988888888


Q ss_pred             CCCc-EEEEECCCCeeee-----Eee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeE---EEEEcCCCCCeEEE
Q 003271          661 NNSE-IRYWSINNGSCAG-----VFK--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC---RLKLQGHKNQVHSV  728 (835)
Q Consensus       661 ~Dg~-I~iwDl~s~~~~~-----~~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~---i~~l~~h~~~I~sl  728 (835)
                      .++. |.+|++.....+.     .+.  .....++|+|+++++++++ .++.|.+||+.+++.   +..+.. ...+.++
T Consensus       148 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~  226 (331)
T 3u4y_A          148 SSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGT-NNLPGTI  226 (331)
T ss_dssp             TTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCE
T ss_pred             CCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccC-CCCCceE
Confidence            7788 9999997643321     111  3477899999999877776 478999999998877   766663 4667899


Q ss_pred             EEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecC----CC---ceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCC
Q 003271          729 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT----GN---KFHSCVFHPTFPSLLVIGCY-ETLELWNMTEN  798 (835)
Q Consensus       729 ~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~----~~---~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~  798 (835)
                      +|+|+|++|+++.  ++.|.+||+.++.. ..+..+..+    ..   ....++|+|++++|++++.+ +.|.+||+.+.
T Consensus       227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          227 VVSRDGSTVYVLTESTVDVFNFNQLSGTL-SFVKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGK  305 (331)
T ss_dssp             EECTTSSEEEEECSSEEEEEEEETTTTEE-EEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred             EECCCCCEEEEEEcCCCEEEEEECCCCce-eeecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence            9999999887765  67899999988632 113333322    11   22458999999999877765 59999999887


Q ss_pred             cEEEeccCCCCeeEEEEeCCC
Q 003271          799 KTLTLSAHDKLVSSLAASTVN  819 (835)
Q Consensus       799 ~~~~l~~h~~~V~~la~spdg  819 (835)
                      ........+..-....++|+.
T Consensus       306 ~~~~~~~~~~~g~~~~~~~~~  326 (331)
T 3u4y_A          306 VVGYVAGIEANGGIAICHPDK  326 (331)
T ss_dssp             EEEECTTCCCBSCEEECCCC-
T ss_pred             cccceecccccCCeEEECCcc
Confidence            765555544433333444443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.90  E-value=1.1e-21  Score=211.56  Aligned_cols=260  Identities=11%  Similarity=0.069  Sum_probs=203.5

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCCC--CeEEEEECCCCCEEE-EEECCCeEEEEecCCCCceeEEee-cC----
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQ--WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFT-GH----  639 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~--~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~~~~~~~~-~h----  639 (835)
                      ++|++++.++.|.+||+.+++.+..+.....  .+.+++|+|++++++ +++.++.|.+||+.+++. +..+. .+    
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~-~~~~~~~~~~~~   80 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCe-EeeEEcCCcccc
Confidence            4789999999999999999999888763332  488999999998765 455578999999998764 33333 22    


Q ss_pred             CCCeEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCCcEEE
Q 003271          640 STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       640 ~~~V~sl~fsp~g~~ll~sgs-----------~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                      ...+.+++|+|+++.++++..           .++.|++||+.+++.+..+..  .+..++|+|++++++++  ++.|++
T Consensus        81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~  158 (337)
T 1pby_B           81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEE
T ss_pred             cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEE
Confidence            226778999999886665531           479999999999988776653  47789999999988887  789999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CC-----------------------eEEEEEcCCCCCcceEEE
Q 003271          707 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DE-----------------------LVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       707 wDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg-----------------------~I~IwDl~t~~~~~~i~~  761 (835)
                      ||+.+++.+..+..+.. ...+.|+|++.+|+...  ++                       .|.+||+.+++..  ...
T Consensus       159 ~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~  235 (337)
T 1pby_B          159 MDPEAGTLVEDKPIQSW-EAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA--MRE  235 (337)
T ss_dssp             EETTTTEEEEEECSTTT-TTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE--EEE
T ss_pred             EECCCCcEeeeeecccc-CCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce--Eee
Confidence            99999988877765431 11337899988776554  22                       4689999887421  344


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       762 l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +..+...+..++|+|++++|+++  ++.|++||+.+++.+........+.+++|+|++++|++++.|+.|++||
T Consensus       236 ~~~~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d  307 (337)
T 1pby_B          236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             cCCCCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEE
Confidence            55566778899999999999888  6899999999998875555556789999999999999999999999996

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.90  E-value=5.5e-22  Score=233.55  Aligned_cols=267  Identities=9%  Similarity=0.049  Sum_probs=208.1

Q ss_pred             CCCEEEEEEeCCCCEEEEEeC-CCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEEC---CCeEEEEecCC-
Q 003271          555 TSKVESCHFSPDGKLLATGGH-DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA---DRTVRVWDTEN-  628 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t-  628 (835)
                      ..+|++++|+|||++||+++. ||++.||++++++... +..|. ..|.+++|+|| +++++++.   +....||.+.. 
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~-lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~   98 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK-LNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTS   98 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE-CCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETT
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe-eecccccccccccCCCC-eEEEEeccCCCCcceEEEEEecc
Confidence            456999999999999999887 9999999997776654 44454 68999999999 78887775   45566665543 


Q ss_pred             -CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcC----Cc
Q 003271          629 -PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIE----NY  703 (835)
Q Consensus       629 -~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~d----g~  703 (835)
                       ..... .+..+ ..+...+|+|+++.++++.+.++.+.+||+.+++.......+...++|+|+|..+++++.+    ..
T Consensus        99 ~~g~~~-~l~~~-~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~~~~~~spDG~~la~~~~~~~~~~~  176 (582)
T 3o4h_A           99 RPGEEQ-RLEAV-KPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVS  176 (582)
T ss_dssp             STTCCE-ECTTS-CSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEE
T ss_pred             CCCccc-cccCC-CCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCCceEEECCCCCEEEEEEEcCCCCeE
Confidence             22222 33322 2355678999987766666666667799999998777666556899999999999988877    77


Q ss_pred             EEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC--eEEEEEcCCCCCcceEEEeecCCCceEEEE-------
Q 003271          704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCV-------  773 (835)
Q Consensus       704 I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~-------  773 (835)
                      |++||+.+++.. .+..|...+.+++|+|||++|+++. ++  .|++||+.++   ... .+..+...+..++       
T Consensus       177 i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~---~~~-~~~~~~~~~~~~~~~~~~~~  251 (582)
T 3o4h_A          177 LFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDG---SVE-DLELPSKDFSSYRPTAITWL  251 (582)
T ss_dssp             EEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTC---CEE-ECCCSCSHHHHHCCSEEEEE
T ss_pred             EEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCC---cEE-EccCCCcChhhhhhccccce
Confidence            999999988765 5677888899999999999999766 77  8999999887   444 5666666666666       


Q ss_pred             -EeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCc---EEEeC
Q 003271          774 -FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC---VKIWK  835 (835)
Q Consensus       774 -fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~---V~IWd  835 (835)
                       |+|+|..+++++.++.++||++  ++...  .+.+.|.+++|+ +++++++++.+..   |++||
T Consensus       252 ~~spdg~~~~~~~~~g~~~l~~~--g~~~~--~~~~~v~~~~~s-dg~~l~~~s~~~~p~~l~~~d  312 (582)
T 3o4h_A          252 GYLPDGRLAVVARREGRSAVFID--GERVE--APQGNHGRVVLW-RGKLVTSHTSLSTPPRIVSLP  312 (582)
T ss_dssp             EECTTSCEEEEEEETTEEEEEET--TEEEC--CCSSEEEEEEEE-TTEEEEEEEETTEEEEEEEET
T ss_pred             eEcCCCcEEEEEEcCCcEEEEEE--CCeec--cCCCceEEEEec-CCEEEEEEcCCCCCCeEEEEc
Confidence             9999988888999999999999  66554  345778999999 9999998887754   66654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.90  E-value=6.4e-22  Score=208.26  Aligned_cols=236  Identities=14%  Similarity=0.114  Sum_probs=183.9

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CeEEEEeccC-CCCeEEEEECCCCCEEEEEE--CCCeEEEEe
Q 003271          550 LIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEH-TQWITDVRFSPSLSRLATSS--ADRTVRVWD  625 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~i~~l~~h-~~~V~sv~fspdg~~Latgs--~Dg~I~IWD  625 (835)
                      .+..|...|.+++|+|||++|++++ ++.|++||+.+ ++....+..| ...|.+++|+|++++|++++  .++.+.||.
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            3456788999999999999999987 78999999999 8877766666 36789999999999999999  345556665


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC--CCCeeeeEe--ecCceEEEEecCCCEEEEEEc-
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--NNGSCAGVF--KSGATQMRFQPRLGRILAAAI-  700 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl--~s~~~~~~~--~~~i~~l~fsp~~~~ll~~s~-  700 (835)
                      ++........+..+ ..+.+++|+|+++.+++++..++.+++|++  .+++.....  ...+.+++|+|++..+++++. 
T Consensus       115 ~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  193 (297)
T 2ojh_A          115 LPSTGGTPRLMTKN-LPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR  193 (297)
T ss_dssp             EETTCCCCEECCSS-SSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT
T ss_pred             EECCCCceEEeecC-CCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC
Confidence            54222224444444 348999999999988878888999999985  444433222  245789999999998888774 


Q ss_pred             CCcEEEEECC-CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C-----------CeEEEEEcCCCCCcceEEEeecCCC
Q 003271          701 ENYISILDVE-TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-----------ELVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       701 dg~I~IwDl~-t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D-----------g~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                      ++.+.+|++. .+..+..+..|...+.+++|+|+|++|++++ +           +.|++||+.++.. ..+..+..+..
T Consensus       194 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~  272 (297)
T 2ojh_A          194 TGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV-ETLFDLFGGQG  272 (297)
T ss_dssp             TSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC-EEEEEEEESTT
T ss_pred             CCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc-eeeeccCCCCc
Confidence            8889999886 4556667777888899999999999998877 4           4699999987632 34555667788


Q ss_pred             ceEEEEEeCCCCEEEEEEcCC
Q 003271          768 KFHSCVFHPTFPSLLVIGCYE  788 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg  788 (835)
                      .+..++|+|++++|++++.+.
T Consensus       273 ~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          273 TMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             TSCSCCBCTTSSEEEEEEECC
T ss_pred             ccccceECCCCCEEEEEEecc
Confidence            899999999999999888764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.89  E-value=1.8e-22  Score=243.31  Aligned_cols=273  Identities=14%  Similarity=0.152  Sum_probs=205.2

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC---CeEEEEECCCCCEEEEEECC---------CeEEEE
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSAD---------RTVRVW  624 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~---~V~sv~fspdg~~Latgs~D---------g~I~IW  624 (835)
                      .+.+++|+|||+++++ +.||+|++||+.+++....+..|..   .|.+++|+|||++|++++.+         +.|++|
T Consensus        18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~   96 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLS   96 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEE
T ss_pred             cccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEE
Confidence            4678999999998776 7899999999999988888877765   49999999999999999874         788999


Q ss_pred             ecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---c-----------------
Q 003271          625 DTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---A-----------------  683 (835)
Q Consensus       625 Dl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i-----------------  683 (835)
                      |+.++... +.....|...+.+++|+|+|+.++++.  ++.|++||+.+++.......+   +                 
T Consensus        97 d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~--~~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~  174 (723)
T 1xfd_A           97 KIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKT  174 (723)
T ss_dssp             ESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSS
T ss_pred             ECCCCceEeccCCccccccccccEECCCCCEEEEEE--CCeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccC
Confidence            99987641 112223445588999999998666544  479999999988776554321   2                 


Q ss_pred             -eEEEEecCCCEEEEEEcCC----------------------------------cEEEEECCCCeEEEEEcCC------C
Q 003271          684 -TQMRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCRLKLQGH------K  722 (835)
Q Consensus       684 -~~l~fsp~~~~ll~~s~dg----------------------------------~I~IwDl~t~~~i~~l~~h------~  722 (835)
                       ..++|+|+++.|++++.++                                  .|++||+.+++....+..+      .
T Consensus       175 ~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~  254 (723)
T 1xfd_A          175 HIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMRE  254 (723)
T ss_dssp             SEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSS
T ss_pred             cceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcc
Confidence             6799999999999988653                                  7999999988765556544      5


Q ss_pred             CCeEEEEEcCCCCEEEEEe-C----CeEEEEEcCCCCCcceEEEeec-CCCce----EEEEEeCCCCEEEEE--EcCC--
Q 003271          723 NQVHSVCWNTSGEYLASVS-D----ELVRVWSIGSGSKGECIHELSC-TGNKF----HSCVFHPTFPSLLVI--GCYE--  788 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasgs-D----g~I~IwDl~t~~~~~~i~~l~~-~~~~V----~sv~fspdg~~L~sg--s~dg--  788 (835)
                      ..+.+++|+|||++|++.. .    ..|++||+.++   .+...+.. +...+    ..++|+|+|+.|++.  ..++  
T Consensus       255 ~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g---~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~  331 (723)
T 1xfd_A          255 YYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTG---VCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGR  331 (723)
T ss_dssp             EEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTC---CEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSS
T ss_pred             ceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCC---cceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCC
Confidence            6789999999999987765 2    47999999887   34333322 22333    378999999987764  4555  


Q ss_pred             ----eEEEEE-cCCCc---EEEeccCCCCeeE-EEEeCCCCEEEEEECC---CcEEEeC
Q 003271          789 ----TLELWN-MTENK---TLTLSAHDKLVSS-LAASTVNGMVASASHD---KCVKIWK  835 (835)
Q Consensus       789 ----~I~IwD-l~~~~---~~~l~~h~~~V~~-la~spdg~~LaSgs~D---G~V~IWd  835 (835)
                          .|++|| ..++.   ...+..+...+.. ++|+||++.|+..+.+   +.++||+
T Consensus       332 ~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  390 (723)
T 1xfd_A          332 GKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYS  390 (723)
T ss_dssp             SCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEE
T ss_pred             cceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEE
Confidence                577788 45555   4455444445554 6999999998776655   7888884

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=3.4e-21  Score=231.76  Aligned_cols=272  Identities=12%  Similarity=0.091  Sum_probs=206.1

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC-----C
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN-----P  629 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t-----~  629 (835)
                      ...|.+++|+|| ++++.+. ++.|++||+.+++.... ..+...+.+++|+|||++|+++ .|+.|++||+.+     +
T Consensus        81 ~~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g  156 (706)
T 2z3z_A           81 AFPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYL-FDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS  156 (706)
T ss_dssp             -CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEE-ECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC
T ss_pred             ccCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEc-cCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC
Confidence            457999999999 6666554 59999999999876544 4567789999999999999985 689999999997     6


Q ss_pred             CceeEEeecCCCC--------------eEEEEEcCCCCcEEEEEe--------------------------------CCC
Q 003271          630 DYSLRTFTGHSTT--------------VMSLDFHPSKEDLLCSCD--------------------------------NNS  663 (835)
Q Consensus       630 ~~~~~~~~~h~~~--------------V~sl~fsp~g~~ll~sgs--------------------------------~Dg  663 (835)
                      .. ......+...              +.++.|+|+|+.+++++.                                .+.
T Consensus       157 ~~-~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~  235 (706)
T 2z3z_A          157 RA-IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHV  235 (706)
T ss_dssp             CC-EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEE
T ss_pred             Cc-EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCee
Confidence            53 3333333332              489999999986665541                                346


Q ss_pred             cEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCC-----cEEEEECCCC-eEEEEEcC-CCC---CeEEE
Q 003271          664 EIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIEN-----YISILDVETQ-VCRLKLQG-HKN---QVHSV  728 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg-----~I~IwDl~t~-~~i~~l~~-h~~---~I~sl  728 (835)
                      .|++||+.+++......     ..+..++|+|+++.|++++.++     .|++||+.++ ........ +..   .+.++
T Consensus       236 ~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~  315 (706)
T 2z3z_A          236 TVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPL  315 (706)
T ss_dssp             EEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCC
T ss_pred             EEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCc
Confidence            89999999988655442     2367899999999999988775     8999999998 44333322 222   24678


Q ss_pred             EEcC--CCCEEEEEe-CCeEEEEEcC-CCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcCC-----eEEEEEcCCC
Q 003271          729 CWNT--SGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYE-----TLELWNMTEN  798 (835)
Q Consensus       729 ~fsp--dg~~Lasgs-Dg~I~IwDl~-t~~~~~~i~~l~~~~~~V~s-v~fspdg~~L~sgs~dg-----~I~IwDl~~~  798 (835)
                      +|+|  +|++|+++. |+.++||++. ++   ..+..+..+...+.. ++|+|+++.|++++.++     .|+.||+.++
T Consensus       316 ~~sp~~dg~~l~~~~~~g~~~l~~~~~~~---~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~  392 (706)
T 2z3z_A          316 TFLPGSNNQFIWQSRRDGWNHLYLYDTTG---RLIRQVTKGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG  392 (706)
T ss_dssp             EECTTCSSEEEEEECTTSSCEEEEEETTS---CEEEECCCSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred             eeecCCCCEEEEEEccCCccEEEEEECCC---CEEEecCCCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence            9999  999998888 8888899886 33   566677777777876 79999999888776653     6778888887


Q ss_pred             cEEEeccCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 003271          799 KTLTLSAHDKLVSSLAASTVNGMVASASHD----KCVKIWK  835 (835)
Q Consensus       799 ~~~~l~~h~~~V~~la~spdg~~LaSgs~D----G~V~IWd  835 (835)
                      +...+ .|...+.+++|+||+++|+.++.+    +.|++||
T Consensus       393 ~~~~l-~~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l~d  432 (706)
T 2z3z_A          393 KTKDL-TPESGMHRTQLSPDGSAIIDIFQSPTVPRKVTVTN  432 (706)
T ss_dssp             CCEES-CCSSSEEEEEECTTSSEEEEEEECSSCSCEEEEEE
T ss_pred             Cceec-cCCCceEEEEECCCCCEEEEEecCCCCCcEEEEEE
Confidence            75444 477789999999999988876544    4599985

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.89  E-value=3.9e-21  Score=242.26  Aligned_cols=276  Identities=9%  Similarity=0.078  Sum_probs=217.1

Q ss_pred             EEEecCCCCCE-------EEEEEeCCCCEEEEEeCC------CeEEEEEcCCCeEE------------------------
Q 003271          548 FQLIPASTSKV-------ESCHFSPDGKLLATGGHD------KKAVLWCTESFTVK------------------------  590 (835)
Q Consensus       548 i~~l~gH~~~V-------~sl~fSpdg~~Lasgs~D------g~I~VWd~~t~~~i------------------------  590 (835)
                      ...+..|...+       .+++|+|||+++++++.+      ..|++|++.+++..                        
T Consensus        92 ~~~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~~~~~~spG~l~~~~~~~  171 (1045)
T 1k32_A           92 IKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATHILFADGRRVIGRNTF  171 (1045)
T ss_dssp             EEECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSEEEEETTEEEEEESCS
T ss_pred             eEEcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEEecCCCcceeeeCCCEEEEeccCC
Confidence            45667788878       999999999977777754      35788887655432                        


Q ss_pred             -------------------------EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271          591 -------------------------STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (835)
Q Consensus       591 -------------------------~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s  645 (835)
                                               ..+.+|...+.++.|+++ .++++++.|+.+.||.+.........+..|. .+.+
T Consensus       172 ~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~  249 (1045)
T 1k32_A          172 ELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYP  249 (1045)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCE
T ss_pred             CccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-Ccce
Confidence                                     123457778888999888 6777888889999998764333355566555 4677


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------------CceEEEEe-cCCCEEEEEEcCCcEEEEECC
Q 003271          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------------GATQMRFQ-PRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------------~i~~l~fs-p~~~~ll~~s~dg~I~IwDl~  710 (835)
                      ++|+|+|+.++++  .++.|++||+...... .+..              .+..++|+ |++..+++++ ++.|++|++.
T Consensus       250 ~~~SpDG~~la~~--~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~  325 (1045)
T 1k32_A          250 RHLNTDGRRILFS--KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVS  325 (1045)
T ss_dssp             EEEEESSSCEEEE--ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTT
T ss_pred             eeEcCCCCEEEEE--eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCC
Confidence            8999999866654  4899999999544333 4433              58899999 9999888887 7899999999


Q ss_pred             CCeEEEEEcCCCC-CeEEEEEcCCCCEEEEEe-CCeEE-EEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          711 TQVCRLKLQGHKN-QVHSVCWNTSGEYLASVS-DELVR-VWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       711 t~~~i~~l~~h~~-~I~sl~fspdg~~Lasgs-Dg~I~-IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      .+.... +..|.. .+.+++|+ +|+.|+.++ ++.|. +||+.++   . ...+..+...+..++|+|++++|++++.+
T Consensus       326 ~~~~~~-~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~---~-~~~l~~~~~~~~~~~~SpDG~~la~~~~~  399 (1045)
T 1k32_A          326 GTYVLK-VPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG---K-AEKFEENLGNVFAMGVDRNGKFAVVANDR  399 (1045)
T ss_dssp             SSBEEE-CSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC---C-EEECCCCCCSEEEEEECTTSSEEEEEETT
T ss_pred             CCceEE-ccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC---C-ceEecCCccceeeeEECCCCCEEEEECCC
Confidence            877554 566777 89999999 999999888 66788 8898775   2 23444677889999999999999999999


Q ss_pred             CeEEEEEcCCCcEEEec-cCCCCeeEEEEeCCCCEEEEEECCC----------cEEEeC
Q 003271          788 ETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDK----------CVKIWK  835 (835)
Q Consensus       788 g~I~IwDl~~~~~~~l~-~h~~~V~~la~spdg~~LaSgs~DG----------~V~IWd  835 (835)
                      +.|++||+.+++...+. .|...|.+++|+|||++|++++.++          .|++||
T Consensus       400 ~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d  458 (1045)
T 1k32_A          400 FEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYD  458 (1045)
T ss_dssp             SEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEE
T ss_pred             CeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEE
Confidence            99999999999887554 8999999999999999998887654          899996

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=5.9e-21  Score=205.96  Aligned_cols=266  Identities=11%  Similarity=0.086  Sum_probs=202.8

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCC-CEEEEEEeCCCCEEE-EEeCCCeEEEEE
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTS-KVESCHFSPDGKLLA-TGGHDKKAVLWC  583 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~-~V~sl~fSpdg~~La-sgs~Dg~I~VWd  583 (835)
                      .++++++.++.|.+|.....                   ..+..+. ++.. .+.+++|+|||++|+ ++..++.|.+||
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d   62 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             cEEEEcCCCCeEEEEECCCC-------------------cEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEE
Confidence            47888999999999943221                   1222232 2222 478899999998764 555678999999


Q ss_pred             cCCCeEEEEeccC-----CCCeEEEEECCCCCEEEEEE------------CCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271          584 TESFTVKSTLEEH-----TQWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (835)
Q Consensus       584 ~~t~~~i~~l~~h-----~~~V~sv~fspdg~~Latgs------------~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl  646 (835)
                      +.+++.+..+...     ...+.+++|+|++++|++++            .++.|.+||+.+++. +..+.. ...+.++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~-~~~~~~-~~~~~~~  140 (337)
T 1pby_B           63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFEA-PRQITML  140 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEEC-CSSCCCE
T ss_pred             CCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcE-EEEEeC-CCCccee
Confidence            9999988776532     22678899999999999886            579999999987653 444443 4568889


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc--eEEEEecCCCEEEEEEcCC----------------------
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA--TQMRFQPRLGRILAAAIEN----------------------  702 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i--~~l~fsp~~~~ll~~s~dg----------------------  702 (835)
                      +|+|+++.++++   ++.|++||+.+++.+..+..+.  ..+.|+|++..+++.+..+                      
T Consensus       141 ~~s~dg~~l~~~---~~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T 1pby_B          141 AWARDGSKLYGL---GRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             EECTTSSCEEEE---SSSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             EECCCCCEEEEe---CCeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeecccccccccccccc
Confidence            999999876655   6899999999999887766432  4557888887665554332                      


Q ss_pred             --cEEEEECCCCeEE-EEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271          703 --YISILDVETQVCR-LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  779 (835)
Q Consensus       703 --~I~IwDl~t~~~i-~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~  779 (835)
                        .|.+||+.+++.. ..+..+...+.+++|+|++++|+++ ++.|++||+.++   +.+..+.. ...+.+++|+|+++
T Consensus       218 ~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~~~~~~s~dg~  292 (337)
T 1pby_B          218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVPL-PHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCCCEEEECTTSC
T ss_pred             ccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-CCeEEEEECCCC---cCcceecC-CCceeeEEECCCCC
Confidence              4789999988764 3344566788899999999999888 799999999887   55555543 45678999999999


Q ss_pred             EEEEEEcCCeEEEEEcCCCcEE
Q 003271          780 SLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       780 ~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      +|++++.++.|++||+.+++.+
T Consensus       293 ~l~~~~~~~~i~v~d~~~~~~~  314 (337)
T 1pby_B          293 TVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEEESBSSEEEEEETTTCCEE
T ss_pred             EEEEEcCCCcEEEEECcCCcEE
Confidence            9999988999999999999877

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.88  E-value=3.1e-21  Score=232.42  Aligned_cols=297  Identities=12%  Similarity=0.088  Sum_probs=206.3

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCC---CEEEEEEeCCCCEEEEEeCC-------
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGHD-------  576 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~---~V~sl~fSpdg~~Lasgs~D-------  576 (835)
                      .++++ +.|+.|++|....+                   .....+.+|..   .|.+++|||||++|++++.+       
T Consensus        29 ~~~~~-~~dg~i~~~d~~~g-------------------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~   88 (723)
T 1xfd_A           29 EFIYR-EQKGTVRLWNVETN-------------------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHS   88 (723)
T ss_dssp             CBCCC-CSSSCEEEBCGGGC-------------------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSC
T ss_pred             cEEEE-eCCCCEEEEECCCC-------------------cEEEEeccccccccccceEEECCCCCEEEEEecCccceeec
Confidence            35554 57788888833222                   12334455554   49999999999999999864       


Q ss_pred             --CeEEEEEcCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe--------
Q 003271          577 --KKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--------  643 (835)
Q Consensus       577 --g~I~VWd~~t~~~i~~l~---~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V--------  643 (835)
                        +.|++||+.+++. ..+.   .|...+.+++|+|||++|++++. +.|++||+.++.. ......+...+        
T Consensus        89 ~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~-~~~~~~~~~~~~~~g~~~~  165 (723)
T 1xfd_A           89 YTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQA-IRVVSTGKEGVIYNGLSDW  165 (723)
T ss_dssp             CCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCC-EEEECCCBTTTEEEEECCH
T ss_pred             ceeeEEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCce-EEEecCCCCCceECcccce
Confidence              7888999998876 3333   45556899999999999999986 7899999998764 44444333333        


Q ss_pred             ----------EEEEEcCCCCcEEEEEeCC---------------------------------CcEEEEECCCCeeeeEee
Q 003271          644 ----------MSLDFHPSKEDLLCSCDNN---------------------------------SEIRYWSINNGSCAGVFK  680 (835)
Q Consensus       644 ----------~sl~fsp~g~~ll~sgs~D---------------------------------g~I~iwDl~s~~~~~~~~  680 (835)
                                .+++|+|+|+.++++...+                                 ..|++||+.++++...+.
T Consensus       166 v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~  245 (723)
T 1xfd_A          166 LYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMM  245 (723)
T ss_dssp             HHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECC
T ss_pred             eEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEee
Confidence                      7899999998766554322                                 279999999887544443


Q ss_pred             ---------cCceEEEEecCCCEEEEEEcC----CcEEEEECCCCeEEEEEcC-CCCCe----EEEEEcCCCCEEEEE-e
Q 003271          681 ---------SGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQG-HKNQV----HSVCWNTSGEYLASV-S  741 (835)
Q Consensus       681 ---------~~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~~i~~l~~-h~~~I----~sl~fspdg~~Lasg-s  741 (835)
                               ..+..++|+|++..+++....    ..|++||+.++++...+.. +...+    .+++|+|||+.|+.. +
T Consensus       246 ~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~  325 (723)
T 1xfd_A          246 PPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRA  325 (723)
T ss_dssp             CCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEE
T ss_pred             CCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEe
Confidence                     236779999999887666543    5799999999887766543 33443    378999999977754 3


Q ss_pred             --CC------eEEEEEcCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcC---CeEEEEEcCCC---cEEEecc-
Q 003271          742 --DE------LVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCY---ETLELWNMTEN---KTLTLSA-  805 (835)
Q Consensus       742 --Dg------~I~IwDl~t~~~~~~i~~l~~~~~~V~s-v~fspdg~~L~sgs~d---g~I~IwDl~~~---~~~~l~~-  805 (835)
                        ++      .|++||+..+....+...+..+...+.. ++|+|+++.|++.+.+   +.++||++...   +...+.. 
T Consensus       326 ~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~  405 (723)
T 1xfd_A          326 IPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCD  405 (723)
T ss_dssp             ECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSSTT
T ss_pred             cccCCCcceeEEEEEeccCCCCccceeEeecCCeEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceeccc
Confidence              66      4666663232210013334333344544 6999999999877766   68899988643   2223433 


Q ss_pred             --CCCCeeEEEEeCCCCEEEEEE
Q 003271          806 --HDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       806 --h~~~V~~la~spdg~~LaSgs  826 (835)
                        |...+..++|+||+++|+..+
T Consensus       406 ~~~~~~~~~~~~spdg~~l~~~~  428 (723)
T 1xfd_A          406 LVENCTYFSASFSHSMDFFLLKC  428 (723)
T ss_dssp             SSSSCCCCEEEECTTSSEEEEEC
T ss_pred             ccCCCCeEEEEECCCCCEEEEEc
Confidence              677899999999999877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.87  E-value=5.8e-21  Score=240.68  Aligned_cols=276  Identities=8%  Similarity=-0.002  Sum_probs=223.5

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      ...+.+|.+.|.++.|+++ .++++++.|+.+.||.+.. +.....+..|. .+.+++|+|||++|+++. ++.|++||+
T Consensus       196 ~~~l~~~~~~v~~~~~s~d-~l~~~~~~dg~~~l~~~~~~g~~~~~l~~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~  272 (1045)
T 1k32_A          196 FKKIVDMSTHVSSPVIVGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTSFT-DYYPRHLNTDGRRILFSK-GGSIYIFNP  272 (1045)
T ss_dssp             EEEEECCSSCCEEEEEETT-EEEEEECTTSSCEEEEEETTSCSCEECCCCC-SSCEEEEEESSSCEEEEE-TTEEEEECT
T ss_pred             eEECcCCCCcccceEEeCC-EEEEEEeccCceEEEEEeCCCCcceEecCCC-CcceeeEcCCCCEEEEEe-CCEEEEecC
Confidence            4455899999999999998 6777888889999998653 34445565565 467789999999998884 899999999


Q ss_pred             CCCCceeEEeec-----------CCCCeEEEEEc-CCCCcEEEEEeCCCcEEEEECCCCeeeeEee--c-CceEEEEecC
Q 003271          627 ENPDYSLRTFTG-----------HSTTVMSLDFH-PSKEDLLCSCDNNSEIRYWSINNGSCAGVFK--S-GATQMRFQPR  691 (835)
Q Consensus       627 ~t~~~~~~~~~~-----------h~~~V~sl~fs-p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~--~-~i~~l~fsp~  691 (835)
                      ....  +..+..           |...|.+++|+ |+|+.+++++  ++.|++|++..++......  . .+..++|+ +
T Consensus       273 ~~~~--l~~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-d  347 (1045)
T 1k32_A          273 DTEK--IEKIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS--RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-T  347 (1045)
T ss_dssp             TTCC--EEECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE--TTEEEEECTTSSBEEECSCCSCEEEEEECSS-S
T ss_pred             CceE--eeeeccCcccccccccccccccceeeecCCCCCEEEEEE--cCEEEEEcCCCCceEEccCCCcceEEeeeEc-C
Confidence            5432  334443           34468999999 9988666544  8899999998876544221  2 46778899 9


Q ss_pred             CCEEEEEEcCCcEE-EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCce
Q 003271          692 LGRILAAAIENYIS-ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKF  769 (835)
Q Consensus       692 ~~~ll~~s~dg~I~-IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V  769 (835)
                      +..+++++.++.+. +||+.+++.... .+|...+.+++|+|||++|++++ ++.|++||+.++   .....+..|...+
T Consensus       348 g~~l~~~s~~~~l~~~~d~~~~~~~~l-~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg---~~~~~~~~~~~~v  423 (1045)
T 1k32_A          348 KVAFIHGTREGDFLGIYDYRTGKAEKF-EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETG---KPTVIERSREAMI  423 (1045)
T ss_dssp             EEEEEEEETTEEEEEEEETTTCCEEEC-CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTC---CEEEEEECSSSCC
T ss_pred             CCeEEEEECCCceEEEEECCCCCceEe-cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCC---ceEEeccCCCCCc
Confidence            88999988888898 999988765543 37888999999999999999988 889999999887   5555555788889


Q ss_pred             EEEEEeCCCCEEEEEEcCC----------eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          770 HSCVFHPTFPSLLVIGCYE----------TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       770 ~sv~fspdg~~L~sgs~dg----------~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..++|+|+|++|++++.++          .|++||+.+++...+..|...+.+++|+|||++|++++.++...+|+
T Consensus       424 ~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~  499 (1045)
T 1k32_A          424 TDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPD  499 (1045)
T ss_dssp             CCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEEC
T ss_pred             cceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcc
Confidence            9999999999998887654          89999999998778889999999999999999999999888877774

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.87  E-value=6.1e-20  Score=200.75  Aligned_cols=257  Identities=11%  Similarity=0.106  Sum_probs=181.5

Q ss_pred             CCeEEEEEc--CCCeEEE-EeccCCCCeEEEEECCCCCEEEEEEC---CCeEEEEecCCCCc-eeEEeecCCCCeEEEEE
Q 003271          576 DKKAVLWCT--ESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA---DRTVRVWDTENPDY-SLRTFTGHSTTVMSLDF  648 (835)
Q Consensus       576 Dg~I~VWd~--~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~---Dg~I~IWDl~t~~~-~~~~~~~h~~~V~sl~f  648 (835)
                      ++.|.+|++  ++++... ....+...+..++|+|+++ |++++.   ++.|++||+.++.. .+..+..+...+..++|
T Consensus        15 ~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~   93 (347)
T 3hfq_A           15 SQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAV   93 (347)
T ss_dssp             CCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEE
T ss_pred             CCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEE
Confidence            456777755  4565543 3334556788899999999 555554   68999999976553 23344556778899999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCC-Ce--eeeEeec------------CceEEEEecCCCEEEEEE-cCCcEEEEECC-C
Q 003271          649 HPSKEDLLCSCDNNSEIRYWSINN-GS--CAGVFKS------------GATQMRFQPRLGRILAAA-IENYISILDVE-T  711 (835)
Q Consensus       649 sp~g~~ll~sgs~Dg~I~iwDl~s-~~--~~~~~~~------------~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~-t  711 (835)
                      +|+++.+++++..++.|.+|++.. +.  .+..+..            .+..++|+|+++ ++++. .++.|.+||+. +
T Consensus        94 spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~  172 (347)
T 3hfq_A           94 DEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDA  172 (347)
T ss_dssp             ETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTT
T ss_pred             CCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCC
Confidence            999987776666889999999963 32  2333322            256799999999 55554 57889999998 5


Q ss_pred             CeEE--EEEcC-CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC-CcceEEEeecCC------CceEEEEEeCCCC
Q 003271          712 QVCR--LKLQG-HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS-KGECIHELSCTG------NKFHSCVFHPTFP  779 (835)
Q Consensus       712 ~~~i--~~l~~-h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~-~~~~i~~l~~~~------~~V~sv~fspdg~  779 (835)
                      ++..  ..+.. ....+..++|+|+|++|++++  ++.|.+|++.... ....+..+....      ..+..++|+|+|+
T Consensus       173 g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~  252 (347)
T 3hfq_A          173 GQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGH  252 (347)
T ss_dssp             SCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSC
T ss_pred             CcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCC
Confidence            5433  22222 334678899999999777765  7899999987521 112233333322      4588999999999


Q ss_pred             EEEEEE-cCCeEEEEEcCCC---cEE-EeccCCCCeeEEEEeCCCCEEEEEECC-CcEEEe
Q 003271          780 SLLVIG-CYETLELWNMTEN---KTL-TLSAHDKLVSSLAASTVNGMVASASHD-KCVKIW  834 (835)
Q Consensus       780 ~L~sgs-~dg~I~IwDl~~~---~~~-~l~~h~~~V~~la~spdg~~LaSgs~D-G~V~IW  834 (835)
                      +|++++ .++.|.+|++...   +.+ .+..+...+.+++|+||+++|++++.+ +.|.+|
T Consensus       253 ~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~  313 (347)
T 3hfq_A          253 FLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLY  313 (347)
T ss_dssp             EEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             EEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence            886554 5789999999732   233 445566778999999999988888764 899999

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.86  E-value=1.4e-19  Score=197.93  Aligned_cols=248  Identities=14%  Similarity=0.156  Sum_probs=182.3

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeC---CCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEec
Q 003271          553 ASTSKVESCHFSPDGKLLATGGH---DKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDT  626 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~---Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl  626 (835)
                      .+...+..++|+|||+ |++++.   ++.|++|++.+++  .+..+..+...+..++|+|++++|++++ .++.|.+|++
T Consensus        37 ~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~  115 (347)
T 3hfq_A           37 AATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKI  115 (347)
T ss_dssp             EECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             eccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            3446678899999999 555543   6899999998766  4455556778899999999999999888 6799999999


Q ss_pred             CCCCc--eeEEeec---------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeeeeE--ee----cCceEEEE
Q 003271          627 ENPDY--SLRTFTG---------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCAGV--FK----SGATQMRF  688 (835)
Q Consensus       627 ~t~~~--~~~~~~~---------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-s~~~~~~--~~----~~i~~l~f  688 (835)
                      .....  .+..+..         +...+.+++|+|+++ +++++..++.|++||+. +++....  +.    .....++|
T Consensus       116 ~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~-l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~  194 (347)
T 3hfq_A          116 AADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR-LAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVF  194 (347)
T ss_dssp             CTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC-EEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEE
T ss_pred             CCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc-EEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEE
Confidence            64322  1222221         123488999999998 88888888999999998 5543321  11    24667999


Q ss_pred             ecCCCEEEEEE-cCCcEEEEECCC--CeE--EEEEcCCC------CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC
Q 003271          689 QPRLGRILAAA-IENYISILDVET--QVC--RLKLQGHK------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK  755 (835)
Q Consensus       689 sp~~~~ll~~s-~dg~I~IwDl~t--~~~--i~~l~~h~------~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~  755 (835)
                      +|+++++++++ .++.|.+|++..  ++.  +..+....      ..+..++|+|+|++|+++.  ++.|.+|++.....
T Consensus       195 spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~  274 (347)
T 3hfq_A          195 SPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGH  274 (347)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGC
T ss_pred             CCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCc
Confidence            99999777765 468999999874  443  22333222      4588999999999885544  88999999974323


Q ss_pred             cceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEE--EcCCCcEEE
Q 003271          756 GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELW--NMTENKTLT  802 (835)
Q Consensus       756 ~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~Iw--Dl~~~~~~~  802 (835)
                      ...+..+..+...+..++|+|++++|++++.+ +.|.+|  |..++++..
T Consensus       275 ~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d~~tg~l~~  324 (347)
T 3hfq_A          275 LTLIQQISTEGDFPRDFDLDPTEAFVVVVNQNTDNATLYARDLTSGKLSL  324 (347)
T ss_dssp             EEEEEEEECSSSCCCEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEE
T ss_pred             EEEeEEEecCCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEeCCCCeEEe
Confidence            35566666667778999999999999998875 799999  555677653

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.86  E-value=5.9e-20  Score=199.36  Aligned_cols=268  Identities=9%  Similarity=0.043  Sum_probs=191.7

Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEE-EECCCeEEEEecCCCCceeEEee
Q 003271          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Lat-gs~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      ++++++++.++++++.++.|++||+.+++.+..+..+. ..+..++|+|+++++++ +..++.|.+||+.+++. ...+.
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~-~~~~~   82 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHAN   82 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcE-EEEEE
Confidence            45678889999999999999999999999988886543 25789999999986654 45689999999998764 33333


Q ss_pred             -cC-----CCCeEEEEEcCCCCcEEEEEeC-----------CCcEEEEECCCCee---eeEee--cCceEEEEecCCCEE
Q 003271          638 -GH-----STTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGSC---AGVFK--SGATQMRFQPRLGRI  695 (835)
Q Consensus       638 -~h-----~~~V~sl~fsp~g~~ll~sgs~-----------Dg~I~iwDl~s~~~---~~~~~--~~i~~l~fsp~~~~l  695 (835)
                       .+     ...+.+++|+|+++.++++...           ++.|.+||+.+++.   +..+.  ..+.+++|+|++. +
T Consensus        83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l  161 (349)
T 1jmx_B           83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-L  161 (349)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-E
T ss_pred             cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-E
Confidence             22     2337889999999866655533           48999999988443   33333  3477889999998 6


Q ss_pred             EEEEcCCcEEEEECCCCeEEEEEcCCCC------------------------CeEEEEEcCCCCEEEEEe--CCeEEEEE
Q 003271          696 LAAAIENYISILDVETQVCRLKLQGHKN------------------------QVHSVCWNTSGEYLASVS--DELVRVWS  749 (835)
Q Consensus       696 l~~s~dg~I~IwDl~t~~~i~~l~~h~~------------------------~I~sl~fspdg~~Lasgs--Dg~I~IwD  749 (835)
                      +++  ++.|.+||+.+++.+..+..+..                        ...++++++++.......  ...+..+|
T Consensus       162 ~~~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~  239 (349)
T 1jmx_B          162 YVA--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  239 (349)
T ss_dssp             EEE--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             EEc--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEe
Confidence            664  44599999999988877653320                        234566665543221111  11222355


Q ss_pred             cCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC
Q 003271          750 IGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       750 l~t~~~~~~i~~l~~~~~~V~sv~fsp-dg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D  828 (835)
                      ..++.  ..+..+..+...+..++|+| ++++++++  ++.|++||+.+++.+........+.+++|++++++|++++.+
T Consensus       240 ~~~~~--~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~  315 (349)
T 1jmx_B          240 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTF  315 (349)
T ss_dssp             TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBS
T ss_pred             ccCCc--EEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCC
Confidence            55442  12223334566788999999 99998888  889999999999987555455668899999999988888889


Q ss_pred             CcEEEeC
Q 003271          829 KCVKIWK  835 (835)
Q Consensus       829 G~V~IWd  835 (835)
                      +.|++||
T Consensus       316 ~~v~v~d  322 (349)
T 1jmx_B          316 NDLAVFN  322 (349)
T ss_dssp             SEEEEEE
T ss_pred             CeEEEEe
Confidence            9999996

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.86  E-value=4.3e-20  Score=204.51  Aligned_cols=285  Identities=12%  Similarity=0.075  Sum_probs=204.4

Q ss_pred             EEEEecCCCCCEEE-----EEEeCCCCEEEEEeC-CC--eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271          547 EFQLIPASTSKVES-----CHFSPDGKLLATGGH-DK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (835)
Q Consensus       547 ~i~~l~gH~~~V~s-----l~fSpdg~~Lasgs~-Dg--~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D  618 (835)
                      ++..+..|...+..     .+|+|||++|++++. ++  .|.+||+.+++......++...+.+++|+||++.|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            45556677766666     889999999998887 66  48889999998887777777766678899999999999999


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEE--EcCCCCcEEEEE---------------------eCCCcEEEEECCCCee
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLD--FHPSKEDLLCSC---------------------DNNSEIRYWSINNGSC  675 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~--fsp~g~~ll~sg---------------------s~Dg~I~iwDl~s~~~  675 (835)
                      +.|++||+.+++. ...+..+...+....  +++++..+++..                     ..+..|++||+.+++.
T Consensus       102 ~~l~~~d~~~g~~-~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          102 RNLMRVDLATLEE-NVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TEEEEEETTTCCE-EEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CeEEEEECCCCcc-eeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            9999999998764 444455555554444  488887554321                     2346899999999876


Q ss_pred             eeEeec--CceEEEEec-CCCEEEEEEcC------CcEEEEECCCCeEEEEEcCCC--CCeEEEEEcCCCCEEEEEe--C
Q 003271          676 AGVFKS--GATQMRFQP-RLGRILAAAIE------NYISILDVETQVCRLKLQGHK--NQVHSVCWNTSGEYLASVS--D  742 (835)
Q Consensus       676 ~~~~~~--~i~~l~fsp-~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h~--~~I~sl~fspdg~~Lasgs--D  742 (835)
                      ......  .+..+.|+| +++.|+.+..+      ..|.++|+..+... .+..+.  ..+..++|+|||+.|+..+  +
T Consensus       181 ~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~-~l~~~~~~~~~~~~~~spdg~~l~~~~~~~  259 (388)
T 3pe7_A          181 TVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMR-KVKTHAEGESCTHEFWVPDGSALVYVSYLK  259 (388)
T ss_dssp             EEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCE-ESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred             EEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceE-EeeeCCCCcccccceECCCCCEEEEEecCC
Confidence            555443  378899999 99888887764      37888888765543 333333  3577899999999776654  3


Q ss_pred             C----eEEEEEcCCCCCcceEEEeecCCCc---eEEEEEeCCCCEEEEE---------EcCCeEEEEEcCCCcEEEeccC
Q 003271          743 E----LVRVWSIGSGSKGECIHELSCTGNK---FHSCVFHPTFPSLLVI---------GCYETLELWNMTENKTLTLSAH  806 (835)
Q Consensus       743 g----~I~IwDl~t~~~~~~i~~l~~~~~~---V~sv~fspdg~~L~sg---------s~dg~I~IwDl~~~~~~~l~~h  806 (835)
                      +    .|++||+.++.. ..+..+..+...   ...++|+|+|+.|++.         ..+..|++||+.+++...+..|
T Consensus       260 ~~~~~~l~~~d~~~g~~-~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~  338 (388)
T 3pe7_A          260 GSPDRFIYSADPETLEN-RQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQHRVARH  338 (388)
T ss_dssp             TCCCEEEEEECTTTCCE-EEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEEEEEEC
T ss_pred             CCCcceEEEEecCCCce-EEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceEEeccc
Confidence            3    399999988742 233333221000   1113799999988865         3455899999999988777777


Q ss_pred             CC-----------CeeEEEEeCCCCEEEEEE-CCCcEEEe
Q 003271          807 DK-----------LVSSLAASTVNGMVASAS-HDKCVKIW  834 (835)
Q Consensus       807 ~~-----------~V~~la~spdg~~LaSgs-~DG~V~IW  834 (835)
                      ..           .+.+++|+|||+.|+.++ .+|...||
T Consensus       339 ~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~  378 (388)
T 3pe7_A          339 DTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALY  378 (388)
T ss_dssp             CCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             cCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEE
Confidence            66           688899999999777665 57777776

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.86  E-value=7.4e-19  Score=193.40  Aligned_cols=260  Identities=12%  Similarity=0.093  Sum_probs=188.4

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCC----CeEEEEEcCC--CeE--EEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEE
Q 003271          554 STSKVESCHFSPDGKLLATGGHD----KKAVLWCTES--FTV--KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVW  624 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~D----g~I~VWd~~t--~~~--i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IW  624 (835)
                      |...+..++|+|||++|++++.+    +.|.+|+++.  ++.  +..+..+......+++  ++++|++++ .++.|.+|
T Consensus        48 ~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           48 EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEE
T ss_pred             cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEE
Confidence            66778889999999999999876    7999998765  443  3444445667788888  888887777 57899999


Q ss_pred             ecCCCCcee---EE--eec--------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee------e------eE-
Q 003271          625 DTENPDYSL---RT--FTG--------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------A------GV-  678 (835)
Q Consensus       625 Dl~t~~~~~---~~--~~~--------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~------~------~~-  678 (835)
                      ++.......   ..  ..+        +...+.+++|+|+++.+++++..++.|++|++.....      +      .. 
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~  205 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAF  205 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEE
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccce
Confidence            997543211   11  111        1234588999999998888877789999999875431      1      11 


Q ss_pred             -ee--cCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeE--EEEEc---CCCCCeEEEEEcCCCCEEEEEe-C--CeEE
Q 003271          679 -FK--SGATQMRFQPRLGRILAAA-IENYISILDVETQVC--RLKLQ---GHKNQVHSVCWNTSGEYLASVS-D--ELVR  746 (835)
Q Consensus       679 -~~--~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~--i~~l~---~h~~~I~sl~fspdg~~Lasgs-D--g~I~  746 (835)
                       ..  .....++|+|+++++++++ .++.|.+||+.++..  +..+.   .+...+.+++|+|||++|+++. +  +.|.
T Consensus       206 ~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~  285 (361)
T 3scy_A          206 KVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVA  285 (361)
T ss_dssp             ECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEE
T ss_pred             ecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEE
Confidence             11  3367899999999988888 589999999987754  22232   2345678999999999987766 5  6899


Q ss_pred             EEEcCCC-CCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEE--EcCCCcEEEec--cCCCCeeEEEEe
Q 003271          747 VWSIGSG-SKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELW--NMTENKTLTLS--AHDKLVSSLAAS  816 (835)
Q Consensus       747 IwDl~t~-~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~Iw--Dl~~~~~~~l~--~h~~~V~~la~s  816 (835)
                      +|++... .....+..+.. ...+..++|+|++++|++++ .++.|.+|  |..++++..+.  .+...+.||+|.
T Consensus       286 v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          286 IFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             EEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            9999632 12234555554 56788999999999999988 56789996  55577766443  344678899886

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.85  E-value=4.8e-19  Score=192.76  Aligned_cols=233  Identities=9%  Similarity=0.085  Sum_probs=189.5

Q ss_pred             CCCeEEEEECCCCCEEEEEEC-------CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271          597 TQWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~-------Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD  669 (835)
                      ...+..++|+|++++|++++.       ++.|.+||..+++. +..+.. ...+.+++|+|+++.+++++..++.|.+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~-~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEV-TQAIHN-DLKPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCE-EEEEEE-SSCCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeE-EEEEec-CCCcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            456889999999999888874       56899999998764 444443 345788999999998888888889999999


Q ss_pred             CCCCeeeeEeecC------------ceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCC
Q 003271          670 INNGSCAGVFKSG------------ATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGE  735 (835)
Q Consensus       670 l~s~~~~~~~~~~------------i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~  735 (835)
                      +.+++.+..+..+            ...++|+|+++.+++++.  ++.|.+||+.+++.+..+..+...+.+++|+|+++
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~  197 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGK  197 (353)
T ss_dssp             TTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTT
T ss_pred             CCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCC
Confidence            9999988777642            477999999999888873  68899999999999988876666788999999999


Q ss_pred             EEEEEe-CCeEEEEEcCCCCCcceEEEeec----CCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEeccCCCC
Q 003271          736 YLASVS-DELVRVWSIGSGSKGECIHELSC----TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKL  809 (835)
Q Consensus       736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~----~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~  809 (835)
                      +|++++ ++.|.+||+.++   +.+..+..    +...+..++|+|++++|++++.+ +.|.+||+.+++.+....... 
T Consensus       198 ~l~~~~~~~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~-  273 (353)
T 3vgz_A          198 RLYTTNADGELITIDTADN---KILSRKKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPE-  273 (353)
T ss_dssp             EEEEECTTSEEEEEETTTT---EEEEEEECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSS-
T ss_pred             EEEEEcCCCeEEEEECCCC---eEEEEEEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCC-
Confidence            999888 899999999887   55555543    45568889999999988888765 799999999998874333222 


Q ss_pred             eeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271          810 VSSLAASTVNGMVASAS-HDKCVKIWK  835 (835)
Q Consensus       810 V~~la~spdg~~LaSgs-~DG~V~IWd  835 (835)
                      ..+++|+|++++++.++ .++.|.+||
T Consensus       274 ~~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          274 SLAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             CceEEECCCCCEEEEEECCCCeEEEEE
Confidence            36799999999665555 689999996

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.85  E-value=7.6e-19  Score=193.30  Aligned_cols=264  Identities=9%  Similarity=0.074  Sum_probs=187.7

Q ss_pred             CCEEEEEe----CCCeEEEEEc--CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC----CeEEEEecCCC--Cc-ee
Q 003271          567 GKLLATGG----HDKKAVLWCT--ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENP--DY-SL  633 (835)
Q Consensus       567 g~~Lasgs----~Dg~I~VWd~--~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D----g~I~IWDl~t~--~~-~~  633 (835)
                      ..++++|+    .++.|.+|++  ++++.......+...+..++|+|++++|++++.+    +.|.+|++...  .. .+
T Consensus        13 ~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~   92 (361)
T 3scy_A           13 ELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAEVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLL   92 (361)
T ss_dssp             EEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEE
T ss_pred             ceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeecccCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEe
Confidence            34556664    3568999866  4555443222267778889999999999999886    79999998764  21 12


Q ss_pred             EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------e-----------cCceEEEEecCCCEEE
Q 003271          634 RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------K-----------SGATQMRFQPRLGRIL  696 (835)
Q Consensus       634 ~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~-----------~~i~~l~fsp~~~~ll  696 (835)
                      .....+...+..+++  +++.++++...++.|.+|++.....+..+      .           .++.+++|+|++++++
T Consensus        93 ~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~  170 (361)
T 3scy_A           93 NTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLL  170 (361)
T ss_dssp             EEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEE
T ss_pred             eEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEE
Confidence            333445567788888  67777777767899999999754332211      1           1236799999999888


Q ss_pred             EEEc-CCcEEEEECCCCe-------E------EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEE
Q 003271          697 AAAI-ENYISILDVETQV-------C------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIH  760 (835)
Q Consensus       697 ~~s~-dg~I~IwDl~t~~-------~------i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~  760 (835)
                      +++. ++.|.+|++....       .      ......+...+.+++|+|+|++|+++.  ++.|.+||+.++.. ..+.
T Consensus       171 ~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~~-~~~~  249 (361)
T 3scy_A          171 ADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGML-DEIQ  249 (361)
T ss_dssp             EEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTEE-EEEE
T ss_pred             EEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCce-EEeE
Confidence            7775 7899999887533       1      122233556788999999999887776  78999999986521 2233


Q ss_pred             Eee---cCCCceEEEEEeCCCCEEEEEEcC--CeEEEEEcC--CCcEE---EeccCCCCeeEEEEeCCCCEEEEEE-CCC
Q 003271          761 ELS---CTGNKFHSCVFHPTFPSLLVIGCY--ETLELWNMT--ENKTL---TLSAHDKLVSSLAASTVNGMVASAS-HDK  829 (835)
Q Consensus       761 ~l~---~~~~~V~sv~fspdg~~L~sgs~d--g~I~IwDl~--~~~~~---~l~~h~~~V~~la~spdg~~LaSgs-~DG  829 (835)
                      .+.   .+...+..++|+|++++|+++..+  +.|.+|++.  +++..   .+.. ...+.+++|+|||++|++++ .++
T Consensus       250 ~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g~~~~~~~~spdg~~l~~~~~~~~  328 (361)
T 3scy_A          250 TVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-GIHPRNFIITPNGKYLLVACRDTN  328 (361)
T ss_dssp             EEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-SSCCCEEEECTTSCEEEEEETTTT
T ss_pred             EEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-CCCCceEEECCCCCEEEEEECCCC
Confidence            332   233557899999999999887765  799999996  45532   2323 56789999999999888887 678


Q ss_pred             cEEEe
Q 003271          830 CVKIW  834 (835)
Q Consensus       830 ~V~IW  834 (835)
                      .|.+|
T Consensus       329 ~v~v~  333 (361)
T 3scy_A          329 VIQIF  333 (361)
T ss_dssp             EEEEE
T ss_pred             CEEEE
Confidence            89996

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.85  E-value=1.2e-19  Score=218.06  Aligned_cols=241  Identities=15%  Similarity=0.140  Sum_probs=182.9

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-----CeEEEEeccCCCC--------------eEEEEECCCCCE
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES-----FTVKSTLEEHTQW--------------ITDVRFSPSLSR  611 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----~~~i~~l~~h~~~--------------V~sv~fspdg~~  611 (835)
                      +..|...+.+++|||||++|+++ .|+.|++||+.+     ++.......+...              +.+++|+|||++
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~  194 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC  194 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred             ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence            44567778999999999999985 689999999998     7766555444443              489999999999


Q ss_pred             EEEEE---------------------------------CCCeEEEEecCCCCceeEEe--ecCCCCeEEEEEcCCCCcEE
Q 003271          612 LATSS---------------------------------ADRTVRVWDTENPDYSLRTF--TGHSTTVMSLDFHPSKEDLL  656 (835)
Q Consensus       612 Latgs---------------------------------~Dg~I~IWDl~t~~~~~~~~--~~h~~~V~sl~fsp~g~~ll  656 (835)
                      |++++                                 .+..|++||+.++.. ....  ..|...+.+++|+|+++.++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~-~~~~~~~~~~~~~~~~~~spdg~~l~  273 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKT-VYLQTGEPKEKFLTNLSWSPDENILY  273 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEE-EECCCCSCTTCEEEEEEECTTSSEEE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCce-EeeccCCCCceeEeeEEEECCCCEEE
Confidence            99998                                 447899999987653 2222  24667899999999998666


Q ss_pred             EEEeCCC-----cEEEEECCCC-eeeeEee--cC-----ceEEEEec--CCCEEEEEEcCCcEEEEECC-CCeEEEEEcC
Q 003271          657 CSCDNNS-----EIRYWSINNG-SCAGVFK--SG-----ATQMRFQP--RLGRILAAAIENYISILDVE-TQVCRLKLQG  720 (835)
Q Consensus       657 ~sgs~Dg-----~I~iwDl~s~-~~~~~~~--~~-----i~~l~fsp--~~~~ll~~s~dg~I~IwDl~-t~~~i~~l~~  720 (835)
                      +++ .++     .|++||+.++ .......  ..     +..++|+|  ++.+++++..++.+.||++. ++..+..+..
T Consensus       274 ~~~-~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~  352 (706)
T 2z3z_A          274 VAE-VNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTK  352 (706)
T ss_dssp             EEE-ECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCC
T ss_pred             EEE-eCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCC
Confidence            544 344     8999999998 4333322  11     35689999  98888888888888888876 5677777877


Q ss_pred             CCCCeEE-EEEcCCCCEEEEEe--CC----eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----Ce
Q 003271          721 HKNQVHS-VCWNTSGEYLASVS--DE----LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ET  789 (835)
Q Consensus       721 h~~~I~s-l~fspdg~~Lasgs--Dg----~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d----g~  789 (835)
                      +...+.+ ++|+|+|+.|+.++  ++    .|+.||+.++.    ...+. +...+.+++|+|++++|++++.+    +.
T Consensus       353 ~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~----~~~l~-~~~~~~~~~~spdg~~l~~~~~~~~~p~~  427 (706)
T 2z3z_A          353 GEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGK----TKDLT-PESGMHRTQLSPDGSAIIDIFQSPTVPRK  427 (706)
T ss_dssp             SSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCC----CEESC-CSSSEEEEEECTTSSEEEEEEECSSCSCE
T ss_pred             CCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCC----ceecc-CCCceEEEEECCCCCEEEEEecCCCCCcE
Confidence            8778877 79999999887666  44    67777776652    22333 56678999999999988877554    46


Q ss_pred             EEEEEcCCCc
Q 003271          790 LELWNMTENK  799 (835)
Q Consensus       790 I~IwDl~~~~  799 (835)
                      |++||+.+++
T Consensus       428 i~l~d~~~~~  437 (706)
T 2z3z_A          428 VTVTNIGKGS  437 (706)
T ss_dssp             EEEEESSSCE
T ss_pred             EEEEECCCCe
Confidence            9999998887

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.84  E-value=2.5e-19  Score=204.02  Aligned_cols=238  Identities=10%  Similarity=0.090  Sum_probs=176.1

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCC-----------eEE-----EEeccCCCCeEEEEECCCCCEEE----E
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESF-----------TVK-----STLEEHTQWITDVRFSPSLSRLA----T  614 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~-----------~~i-----~~l~~h~~~V~sv~fspdg~~La----t  614 (835)
                      ...+.++++++++.+|++++.|+ |+||+....           ...     ..+ .|...|.+++|+|++++|+    +
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~s  113 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMS  113 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEE
T ss_pred             CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEec
Confidence            34588999999999999999887 888875311           111     112 3567899999999999999    7


Q ss_pred             EECCCeEEEEecCCC-----Cc-----eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---c
Q 003271          615 SSADRTVRVWDTENP-----DY-----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---S  681 (835)
Q Consensus       615 gs~Dg~I~IWDl~t~-----~~-----~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~  681 (835)
                      ++.|+.|+|||+.+.     ..     .+..+.+|...|.+++|+|+...+|++++.||.|++||++++..+....   .
T Consensus       114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~  193 (434)
T 2oit_A          114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTV  193 (434)
T ss_dssp             TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGG
T ss_pred             cCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCC
Confidence            888999999998754     11     2455677999999999999866789999999999999999886654433   4


Q ss_pred             CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC-------CCCeEEEEEcCCCCEEEEEe--CC------eEE
Q 003271          682 GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH-------KNQVHSVCWNTSGEYLASVS--DE------LVR  746 (835)
Q Consensus       682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h-------~~~I~sl~fspdg~~Lasgs--Dg------~I~  746 (835)
                      .+.+++|+|++.+|++++.|+.|++||++ +.....+..|       ...|.+++|++++.++++.+  +|      .++
T Consensus       194 ~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~~~~~~v~  272 (434)
T 2oit_A          194 AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTLETSPDVV  272 (434)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCSSSCCEEE
T ss_pred             ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCccCCCCceE
Confidence            69999999999999999999999999998 5555555433       23799999999998887655  53      399


Q ss_pred             EEEcCCCCC--cceEEEee-------cCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEc
Q 003271          747 VWSIGSGSK--GECIHELS-------CTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNM  795 (835)
Q Consensus       747 IwDl~t~~~--~~~i~~l~-------~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl  795 (835)
                      +|+++....  ...+..+.       ........+.+.++.+.+++++... .|.|+..
T Consensus       273 i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~  331 (434)
T 2oit_A          273 MALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILAR  331 (434)
T ss_dssp             EEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred             EEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEe
Confidence            999986532  12222221       1222334455557778777776643 4666554

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.83  E-value=4.6e-20  Score=222.44  Aligned_cols=269  Identities=12%  Similarity=0.074  Sum_probs=199.4

Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC---CeEEEEECCCCCEEEEEEC---------CCeEEEEecC
Q 003271          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ---WITDVRFSPSLSRLATSSA---------DRTVRVWDTE  627 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~---~V~sv~fspdg~~Latgs~---------Dg~I~IWDl~  627 (835)
                      +++|+|||+++++ +.|+.|++||+.+++....+..|..   .|.+++|+|||++|++++.         |+.|++||+.
T Consensus        20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~   98 (719)
T 1z68_A           20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLS   98 (719)
T ss_dssp             CCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETT
T ss_pred             ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECC
Confidence            6899999965554 4699999999999998877766544   4899999999999999876         7899999999


Q ss_pred             CCCcee-EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---------------------ceE
Q 003271          628 NPDYSL-RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---------------------ATQ  685 (835)
Q Consensus       628 t~~~~~-~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---------------------i~~  685 (835)
                      +++... ..+   ...+.+++|+|+|+.++++ . ++.|++||+.++++......+                     ...
T Consensus        99 ~g~~~~~~~l---~~~~~~~~~SPDG~~la~~-~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~  173 (719)
T 1z68_A           99 NGEFVRGNEL---PRPIQYLCWSPVGSKLAYV-Y-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYA  173 (719)
T ss_dssp             TTEECCSSCC---CSSBCCEEECSSTTCEEEE-E-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCC
T ss_pred             CCccccceec---CcccccceECCCCCEEEEE-E-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCccc
Confidence            865310 222   2568899999999876654 3 789999999888765433211                     147


Q ss_pred             EEEecCCCEEEEEEcCC----------------------------------cEEEEECCCCeEE---E-----EEcCCCC
Q 003271          686 MRFQPRLGRILAAAIEN----------------------------------YISILDVETQVCR---L-----KLQGHKN  723 (835)
Q Consensus       686 l~fsp~~~~ll~~s~dg----------------------------------~I~IwDl~t~~~i---~-----~l~~h~~  723 (835)
                      ++|+|+|+.|++++.|.                                  .|++||+.+++..   .     .+.+|..
T Consensus       174 ~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~  253 (719)
T 1z68_A          174 LWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDY  253 (719)
T ss_dssp             EEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCE
T ss_pred             EEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcc
Confidence            99999999999988652                                  7889999987642   1     1335788


Q ss_pred             CeEEEEEcCCCCEEEEEe-C----CeEEEEE----cCCCCCcceEE-EeecCCCceE-----EEEEeCCCCEEEEE--Ec
Q 003271          724 QVHSVCWNTSGEYLASVS-D----ELVRVWS----IGSGSKGECIH-ELSCTGNKFH-----SCVFHPTFPSLLVI--GC  786 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-D----g~I~IwD----l~t~~~~~~i~-~l~~~~~~V~-----sv~fspdg~~L~sg--s~  786 (835)
                      .+.+++|+||++++++.. .    ..|.+||    +.++.....+. ....+...+.     .+.|+|+|+.|+..  ..
T Consensus       254 ~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  333 (719)
T 1z68_A          254 YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKIFSDK  333 (719)
T ss_dssp             EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEEEECT
T ss_pred             eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEEEEcc
Confidence            899999999988777754 2    2588899    76653222221 0134555555     78999999976653  34


Q ss_pred             CC--eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECC-----CcEEEeC
Q 003271          787 YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHD-----KCVKIWK  835 (835)
Q Consensus       787 dg--~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~D-----G~V~IWd  835 (835)
                      ++  .|++||+.+++...+..+...|..+.++ +++.|+..+.+     +.++||+
T Consensus       334 ~g~~~l~~~~~~~~~~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~  388 (719)
T 1z68_A          334 DGYKHIHYIKDTVENAIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYR  388 (719)
T ss_dssp             TSCEEEEEESSCSTTCEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEE
T ss_pred             CCceEEEEEECCCCceEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEE
Confidence            44  7888899888877777777778888888 88877766655     7788883

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.82  E-value=4.8e-18  Score=188.06  Aligned_cols=265  Identities=11%  Similarity=0.064  Sum_probs=184.8

Q ss_pred             EEEEEeCC--CeEEEEEc--CCCeEEE--Eec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEecC-CCCceeEEeec-C
Q 003271          569 LLATGGHD--KKAVLWCT--ESFTVKS--TLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE-NPDYSLRTFTG-H  639 (835)
Q Consensus       569 ~Lasgs~D--g~I~VWd~--~t~~~i~--~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~-t~~~~~~~~~~-h  639 (835)
                      +|++|+..  +.|.+|++  ++++...  ... .+...+..++|+|++++|++++.+ .|.+|++. +++. ...... .
T Consensus         4 ~~~vg~~~~~~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~-~~~~~~~~   81 (365)
T 1jof_A            4 HLMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEI-VHEASHPI   81 (365)
T ss_dssp             EEEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEE-EEEEEEEC
T ss_pred             EEEEEEccCCCcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCE-EEeeEeec
Confidence            45566653  56877764  5665432  221 234568899999999999999888 99999997 5543 222211 1


Q ss_pred             CCCeEEEEEcCCCCc-EEEEEe-------------CCCcEEEEECC-CCeeeeEee-------cCceEEEEecCCCEEEE
Q 003271          640 STTVMSLDFHPSKED-LLCSCD-------------NNSEIRYWSIN-NGSCAGVFK-------SGATQMRFQPRLGRILA  697 (835)
Q Consensus       640 ~~~V~sl~fsp~g~~-ll~sgs-------------~Dg~I~iwDl~-s~~~~~~~~-------~~i~~l~fsp~~~~ll~  697 (835)
                      .+.+.+++|+|+++. ++++++             .++.+.+|++. .++....+.       ..+..++|+|+++++++
T Consensus        82 ~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~  161 (365)
T 1jof_A           82 GGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYS  161 (365)
T ss_dssp             CSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEE
T ss_pred             CCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEE
Confidence            123567899999885 344543             68999999997 465543332       34788999999999888


Q ss_pred             EEc-CCcEEEEECC-CCeEE--EEEc--CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCC--CCCcceEEEee---c
Q 003271          698 AAI-ENYISILDVE-TQVCR--LKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS--GSKGECIHELS---C  764 (835)
Q Consensus       698 ~s~-dg~I~IwDl~-t~~~i--~~l~--~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t--~~~~~~i~~l~---~  764 (835)
                      +.. ++.|++||+. +++..  ..+.  .|...+..++|+|+|++|+++.  ++.|.+|++..  +........+.   .
T Consensus       162 ~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~  241 (365)
T 1jof_A          162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPP  241 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCT
T ss_pred             EcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCC
Confidence            775 5799999998 66543  3333  2466799999999999988876  67999998763  32100011222   1


Q ss_pred             ----CCC------ceEEEE-EeCCCCEEEEEEcCC------eEEEEEcC-CCcEEE----eccCCCCeeEEEEeC---CC
Q 003271          765 ----TGN------KFHSCV-FHPTFPSLLVIGCYE------TLELWNMT-ENKTLT----LSAHDKLVSSLAAST---VN  819 (835)
Q Consensus       765 ----~~~------~V~sv~-fspdg~~L~sgs~dg------~I~IwDl~-~~~~~~----l~~h~~~V~~la~sp---dg  819 (835)
                          +..      .+..++ |+|+|++|+++..+.      .|.+|++. +++...    ...+...+..++|+|   ||
T Consensus       242 ~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~~~~~~~a~sp~~~dg  321 (365)
T 1jof_A          242 GIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSD  321 (365)
T ss_dssp             TCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCT
T ss_pred             CcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCCCCcccceecCCCcCC
Confidence                111      588999 999999998876533      89999996 566543    233556678899999   89


Q ss_pred             CEEEEEECC-CcEEEeC
Q 003271          820 GMVASASHD-KCVKIWK  835 (835)
Q Consensus       820 ~~LaSgs~D-G~V~IWd  835 (835)
                      ++|++++.+ +.|.||+
T Consensus       322 ~~l~v~~~~~~~v~v~~  338 (365)
T 1jof_A          322 EWMAITDDQEGWLEIYR  338 (365)
T ss_dssp             TEEEEECSSSCEEEEEE
T ss_pred             CEEEEEEcCCCeEEEEE
Confidence            999998864 8999995

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.82  E-value=4e-19  Score=214.21  Aligned_cols=302  Identities=11%  Similarity=0.049  Sum_probs=202.9

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCC---CEEEEEEeCCCCEEEEEeC--------
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTS---KVESCHFSPDGKLLATGGH--------  575 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~---~V~sl~fSpdg~~Lasgs~--------  575 (835)
                      .+++.+ .|++|.+|....+.                   ....+.+|..   .|.+++|||||++|++++.        
T Consensus        28 ~~~~~~-~d~~i~~~~~~~g~-------------------~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s   87 (719)
T 1z68_A           28 EYLHQS-ADNNIVLYNIETGQ-------------------SYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYS   87 (719)
T ss_dssp             EEEEEC-TTSCEEEEESSSCC-------------------EEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSC
T ss_pred             eEEEEc-CCCCEEEEEcCCCc-------------------EEEEEccccccccceeeEEECCCCCeEEEEecCceeEEee
Confidence            455555 48899999443321                   1223333332   4889999999999998876        


Q ss_pred             -CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe-----------
Q 003271          576 -DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV-----------  643 (835)
Q Consensus       576 -Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V-----------  643 (835)
                       ++.|++||+.+++.+... .....+.+++|+|||+.|+++. |+.|++||+.++........++...|           
T Consensus        88 ~~~~i~~~d~~~g~~~~~~-~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~e  165 (719)
T 1z68_A           88 YTATYYIYDLSNGEFVRGN-ELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEE  165 (719)
T ss_dssp             EEEEEEEEETTTTEECCSS-CCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHH
T ss_pred             cceEEEEEECCCCccccce-ecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeee
Confidence             789999999998773111 1135688999999999999986 78999999987764222223333322           


Q ss_pred             ------EEEEEcCCCCcEEEEEeCCC---------------------------------cEEEEECCCCeee---eE---
Q 003271          644 ------MSLDFHPSKEDLLCSCDNNS---------------------------------EIRYWSINNGSCA---GV---  678 (835)
Q Consensus       644 ------~sl~fsp~g~~ll~sgs~Dg---------------------------------~I~iwDl~s~~~~---~~---  678 (835)
                            .+++|+|||+.++++...++                                 .|++||+.+++..   ..   
T Consensus       166 e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~  245 (719)
T 1z68_A          166 EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVP  245 (719)
T ss_dssp             HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCC
T ss_pred             ecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCC
Confidence                  48999999986665543322                                 7889999987653   11   


Q ss_pred             -----eecCceEEEEecCCCEEEEEEcC----CcEEEEE----CCCCeEEEEE----cCCCCCeE-----EEEEcCCCCE
Q 003271          679 -----FKSGATQMRFQPRLGRILAAAIE----NYISILD----VETQVCRLKL----QGHKNQVH-----SVCWNTSGEY  736 (835)
Q Consensus       679 -----~~~~i~~l~fsp~~~~ll~~s~d----g~I~IwD----l~t~~~i~~l----~~h~~~I~-----sl~fspdg~~  736 (835)
                           ....+..++|+|++..+++....    ..|.+||    +.++++...+    .+|...+.     ++.|+|||+.
T Consensus       246 ~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~  325 (719)
T 1z68_A          246 AMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAIS  325 (719)
T ss_dssp             HHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSC
T ss_pred             ccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCe
Confidence                 11236789999996555554332    2488999    8777665444    35677676     8899999986


Q ss_pred             EEE--Ee-CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCC--C--cEEE
Q 003271          737 LAS--VS-DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTE--N--KTLT  802 (835)
Q Consensus       737 Las--gs-Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~--~--~~~~  802 (835)
                      |+.  .. ++  .|++||+.++   . ...+..+...+..+.++ ++..|+..+.+     +.+++|.+..  +  +...
T Consensus       326 l~~~~~~~~g~~~l~~~~~~~~---~-~~~lt~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  400 (719)
T 1z68_A          326 YYKIFSDKDGYKHIHYIKDTVE---N-AIQITSGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPPSKKC  400 (719)
T ss_dssp             EEEEEECTTSCEEEEEESSCST---T-CEECSCSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSCCEEE
T ss_pred             EEEEEEccCCceEEEEEECCCC---c-eEecccCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCCCcee
Confidence            554  33 55  6777777665   2 34555556667788777 88888888776     6777887653  4  2333


Q ss_pred             ec----cCCCCeeEEEEeCCCCEEEE-EECC--CcEEEeC
Q 003271          803 LS----AHDKLVSSLAASTVNGMVAS-ASHD--KCVKIWK  835 (835)
Q Consensus       803 l~----~h~~~V~~la~spdg~~LaS-gs~D--G~V~IWd  835 (835)
                      +.    +|...+..+.|++++++|+. ++.+  ..+.+||
T Consensus       401 l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d  440 (719)
T 1z68_A          401 VTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHD  440 (719)
T ss_dssp             SSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEEC
T ss_pred             ccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEE
Confidence            33    26677889999999986664 3333  3466664

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.81  E-value=5.4e-18  Score=183.88  Aligned_cols=272  Identities=11%  Similarity=0.075  Sum_probs=187.9

Q ss_pred             ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-CCEEEEEEeCCCCEEE-EEeCCCeE
Q 003271          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLA-TGGHDKKA  579 (835)
Q Consensus       502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sl~fSpdg~~La-sgs~Dg~I  579 (835)
                      +.....++++++.++.|.+|.....                   ..+..+..+. ..+.+++|+|||++++ ++..++.|
T Consensus         7 ~~~~~~~~v~~~~~~~v~~~d~~~~-------------------~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i   67 (349)
T 1jmx_B            7 LKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI   67 (349)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             ccCCCEEEEEeCCCCeEEEEECCCC-------------------cEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcE
Confidence            3455678889999999999943222                   1222333222 2577899999998665 45578999


Q ss_pred             EEEEcCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEECC------------CeEEEEecCCCCc--eeEEeecC
Q 003271          580 VLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSSAD------------RTVRVWDTENPDY--SLRTFTGH  639 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~h~------~~V~sv~fspdg~~Latgs~D------------g~I~IWDl~t~~~--~~~~~~~h  639 (835)
                      .+||+.+++.+..+..+.      ..+.+++|+|++++|++++.+            +.|.+||+.+++.  .+..+. +
T Consensus        68 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~-~  146 (349)
T 1jmx_B           68 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP-M  146 (349)
T ss_dssp             EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE-C
T ss_pred             EEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc-C
Confidence            999999999887775332      337899999999999998865            8999999987432  123333 3


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc---------------------------eEEEEecCC
Q 003271          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA---------------------------TQMRFQPRL  692 (835)
Q Consensus       640 ~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i---------------------------~~l~fsp~~  692 (835)
                      ...+.+++|+|+++ +++ +  ++.|++||+.+++.+..+....                           ..+++++++
T Consensus       147 ~~~~~~~~~s~dg~-l~~-~--~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  222 (349)
T 1jmx_B          147 PRQVYLMRAADDGS-LYV-A--GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDD  222 (349)
T ss_dssp             CSSCCCEEECTTSC-EEE-E--SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC---
T ss_pred             CCcccceeECCCCc-EEE-c--cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCC
Confidence            44688999999998 655 4  3349999999998877665321                           223444332


Q ss_pred             CEEEEEE-cCCcEEEEECCCCeEE-EEEcCCCCCeEEEEEcC-CCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCce
Q 003271          693 GRILAAA-IENYISILDVETQVCR-LKLQGHKNQVHSVCWNT-SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF  769 (835)
Q Consensus       693 ~~ll~~s-~dg~I~IwDl~t~~~i-~~l~~h~~~I~sl~fsp-dg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V  769 (835)
                      ....... ....+..+|..+++.. ..+..+...+.+++|+| ++++|+++ ++.|++||+.++   +.+..+.. ...+
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~---~~~~~~~~-~~~~  297 (349)
T 1jmx_B          223 KQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQR---KLIKAANL-DHTY  297 (349)
T ss_dssp             ----CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTT---EEEEEEEC-SSCC
T ss_pred             cCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-cCeEEEEECccC---eEEEEEcC-CCCc
Confidence            1110000 0112223555554322 22233566789999999 99999988 899999999887   55555543 3457


Q ss_pred             EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE
Q 003271          770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT  802 (835)
Q Consensus       770 ~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~  802 (835)
                      ..++|+|++++|++++.++.|++||+.+++.+.
T Consensus       298 ~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~  330 (349)
T 1jmx_B          298 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK  330 (349)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred             cceEECCCCCEEEEecCCCeEEEEeccccceee
Confidence            789999999999998888999999999988773

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.80  E-value=8.7e-19  Score=193.87  Aligned_cols=270  Identities=12%  Similarity=0.030  Sum_probs=187.8

Q ss_pred             EEEEEEeCCCCEEEEEeCC---CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          558 VESCHFSPDGKLLATGGHD---KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~D---g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      +.+++|+|||++|+.+..+   ..|.+||+.+++.......+...+..+.|+||+++|+.++.++.|++||+.++.. ..
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~-~~  116 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEE-QV  116 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCE-EE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCc-EE
Confidence            6788999999998877543   4788999998876554443333334488999999999999999999999987653 33


Q ss_pred             EeecCCCCeEE-------------------EEEcCCCCcEEEEE----eCCCcEEEEECCCCeeeeEee--cCceEEEEe
Q 003271          635 TFTGHSTTVMS-------------------LDFHPSKEDLLCSC----DNNSEIRYWSINNGSCAGVFK--SGATQMRFQ  689 (835)
Q Consensus       635 ~~~~h~~~V~s-------------------l~fsp~g~~ll~sg----s~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fs  689 (835)
                      .+..+......                   +.|+|+++.+++..    ..+..|++||+.+++......  ..+..+.|+
T Consensus       117 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~s  196 (396)
T 3c5m_A          117 IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDTAWLGHPIYR  196 (396)
T ss_dssp             EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEESSCEEEEEEE
T ss_pred             EEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCCcccccceEC
Confidence            33333332222                   34577776554432    456789999999887655543  347788999


Q ss_pred             c-CCCEEEEEEcC------CcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCC
Q 003271          690 P-RLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSK  755 (835)
Q Consensus       690 p-~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h-~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~  755 (835)
                      | ++..|+.++.+      ..|.+||+..++........ ...+..++|+|+|++|+.++ +     +.|++||+.++..
T Consensus       197 p~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~  276 (396)
T 3c5m_A          197 PFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLEN  276 (396)
T ss_dssp             TTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCE
T ss_pred             CCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCe
Confidence            9 77777776654      36889998766543322211 23578899999999877665 3     3499999987632


Q ss_pred             cceEEEeecCCCceEEEEEeC-CCCEEEEEE----------------cCCeEEEEEcCCCcEEEeccCCC----------
Q 003271          756 GECIHELSCTGNKFHSCVFHP-TFPSLLVIG----------------CYETLELWNMTENKTLTLSAHDK----------  808 (835)
Q Consensus       756 ~~~i~~l~~~~~~V~sv~fsp-dg~~L~sgs----------------~dg~I~IwDl~~~~~~~l~~h~~----------  808 (835)
                       ..+..+.    ... +.|+| ++++|++++                .+..|++||+.+++...+..+..          
T Consensus       277 -~~l~~~~----~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~  350 (396)
T 3c5m_A          277 -EEVMVMP----PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQ  350 (396)
T ss_dssp             -EEEEECC----SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSS
T ss_pred             -EEeeeCC----CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccccccccc
Confidence             2222221    233 89999 999887765                23689999999887666665554          


Q ss_pred             -CeeEEEEeCCCCEEEEEEC-CCcEEEe
Q 003271          809 -LVSSLAASTVNGMVASASH-DKCVKIW  834 (835)
Q Consensus       809 -~V~~la~spdg~~LaSgs~-DG~V~IW  834 (835)
                       .+..++|+|||+.|+.++. ++...||
T Consensus       351 ~~~~~~~~s~dg~~l~~~s~~~~~~~l~  378 (396)
T 3c5m_A          351 ITHPHPSFTPNDDGVLFTSDFEGVPAIY  378 (396)
T ss_dssp             TTCCCCEECTTSSEEEEEECTTSSCEEE
T ss_pred             CCCCCceEccCCCeEEEEecCCCCceEE
Confidence             2667899999998877764 5666665

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=6.5e-17  Score=178.97  Aligned_cols=244  Identities=12%  Similarity=0.106  Sum_probs=173.8

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC-CCeEEEEeccC-CCCeEEEEECCCCCE--EEEEE-------------
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTE-SFTVKSTLEEH-TQWITDVRFSPSLSR--LATSS-------------  616 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-t~~~i~~l~~h-~~~V~sv~fspdg~~--Latgs-------------  616 (835)
                      +...+..++|+|||++|++++.+ .|.+|++. +++........ .+.+.+++|+|++++  +++++             
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeec
Confidence            44568899999999999999887 99999997 77765433211 123567899999994  45553             


Q ss_pred             CCCeEEEEecCCCCceeEEee----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-CCeee--eEee-----cCce
Q 003271          617 ADRTVRVWDTENPDYSLRTFT----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-NGSCA--GVFK-----SGAT  684 (835)
Q Consensus       617 ~Dg~I~IWDl~t~~~~~~~~~----~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-s~~~~--~~~~-----~~i~  684 (835)
                      .++.+.+|++.........+.    .+...+.+++|+|+|+.++++...++.|++||+. +++..  ..+.     ....
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~  196 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCC
Confidence            689999999974322222222    2556799999999998766555457899999998 67643  2232     2377


Q ss_pred             EEEEecCCCEEEEEEc-CCcEEEEECC--CCeEEE---EEc-------CCCC------CeEEEE-EcCCCCEEEEEe--C
Q 003271          685 QMRFQPRLGRILAAAI-ENYISILDVE--TQVCRL---KLQ-------GHKN------QVHSVC-WNTSGEYLASVS--D  742 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~-dg~I~IwDl~--t~~~i~---~l~-------~h~~------~I~sl~-fspdg~~Lasgs--D  742 (835)
                      .++|+|+++++++++. ++.|.+|++.  +++...   .+.       +|..      .+.+++ |+|||++|+++.  +
T Consensus       197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~  276 (365)
T 1jof_A          197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence            8999999999988876 6889999765  455421   222       1122      488999 999999888765  3


Q ss_pred             C-----eEEEEEcC-CCCCcceEE-EeecCCCceEEEEEeC---CCCEEEEEEcC-CeEEEEEcCCCc
Q 003271          743 E-----LVRVWSIG-SGSKGECIH-ELSCTGNKFHSCVFHP---TFPSLLVIGCY-ETLELWNMTENK  799 (835)
Q Consensus       743 g-----~I~IwDl~-t~~~~~~i~-~l~~~~~~V~sv~fsp---dg~~L~sgs~d-g~I~IwDl~~~~  799 (835)
                      +     .|.+|++. ++. ...+. ....+...+..++|+|   ++++|++++.+ +.|.||+++...
T Consensus       277 ~~~~~~~i~v~~~~~~g~-~~~~~~~~~~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~~  343 (365)
T 1jof_A          277 KFELQGYIAGFKLRDCGS-IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             STTSCCEEEEEEECTTSC-EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCCCCCeEEEEEECCCCC-EEEeeeeeecCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchhh
Confidence            3     89999996 332 11111 2333455567889999   89999999875 799999987763

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.79  E-value=2.9e-18  Score=201.76  Aligned_cols=228  Identities=10%  Similarity=0.061  Sum_probs=176.3

Q ss_pred             CCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecCC-CCeEEEEEcCCCCcEEEEEeC---CCcEEEEECC
Q 003271          597 TQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCDN---NSEIRYWSIN  671 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~sgs~---Dg~I~iwDl~  671 (835)
                      ..+|++++|+|||++||+++. ||+++||++.++.  ...+..|. ..|.++.|+|+  .++++++.   +....+|.+.
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~--~~~lt~~~~~~~~~~~~spd--~~l~~~~~~~g~~~~~l~~~~   96 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGE--TVKLNREPINSVLDPHYGVG--RVILVRDVSKGAEQHALFKVN   96 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTE--EEECCSSCCSEECEECTTCS--EEEEEEECSTTSCCEEEEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCC--cEeeecccccccccccCCCC--eEEEEeccCCCCcceEEEEEe
Confidence            457999999999999999887 9999999996543  44555555 68999999998  57777664   4445555443


Q ss_pred             C---CeeeeEe-ecCceEEEEecCCCE-EEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---
Q 003271          672 N---GSCAGVF-KSGATQMRFQPRLGR-ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---  742 (835)
Q Consensus       672 s---~~~~~~~-~~~i~~l~fsp~~~~-ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D---  742 (835)
                      .   +...... .......+|+|+++. +++...++.+.+||+.+++.......+.   .+++|+|||++|++++ +   
T Consensus        97 ~~~~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~  173 (582)
T 3o4h_A           97 TSRPGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGG  173 (582)
T ss_dssp             TTSTTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETT
T ss_pred             ccCCCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCC
Confidence            2   2222111 123556789999865 4455566677799999987765554333   7899999999999777 5   


Q ss_pred             -CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC--eEEEEEcCCCcEEEeccCCCCeeEEE-----
Q 003271          743 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTLTLSAHDKLVSSLA-----  814 (835)
Q Consensus       743 -g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l~~h~~~V~~la-----  814 (835)
                       ..|++||+.++.    ...+..+...+..++|+|||+.|+++..++  .|++||+.+++...+..|...+..++     
T Consensus       174 ~~~i~~~d~~~g~----~~~l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~  249 (582)
T 3o4h_A          174 RVSLFTSNLSSGG----LRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAIT  249 (582)
T ss_dssp             EEEEEEEETTTCC----CEEECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEEECCCSCSHHHHHCCSEEE
T ss_pred             CeEEEEEcCCCCC----ceEeecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEEEccCCCcChhhhhhcccc
Confidence             689999998873    235667788899999999999999888888  89999999998886667877787777     


Q ss_pred             ---EeCCCCEEEEEECCCcEEEeC
Q 003271          815 ---ASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       815 ---~spdg~~LaSgs~DG~V~IWd  835 (835)
                         |+|||.++++++.||.++||+
T Consensus       250 ~~~~spdg~~~~~~~~~g~~~l~~  273 (582)
T 3o4h_A          250 WLGYLPDGRLAVVARREGRSAVFI  273 (582)
T ss_dssp             EEEECTTSCEEEEEEETTEEEEEE
T ss_pred             ceeEcCCCcEEEEEEcCCcEEEEE
Confidence               999999999999999999995

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.78  E-value=6.4e-18  Score=205.11  Aligned_cols=263  Identities=13%  Similarity=0.077  Sum_probs=192.8

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC-----eEEEEECCCCCEEEEEECC---------CeE
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----ITDVRFSPSLSRLATSSAD---------RTV  621 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~-----V~sv~fspdg~~Latgs~D---------g~I  621 (835)
                      ....++.|+|||++|+++  |+.|++||+.+++....+.+|...     ..++.|+|||++|+.++.+         +.+
T Consensus        17 ~~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~   94 (740)
T 4a5s_A           17 LKLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (740)
T ss_dssp             CCCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEE
Confidence            346689999999998886  899999999999988888777643     2447899999999998876         566


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-------------------
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-------------------  682 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-------------------  682 (835)
                      .+||+.+++  ...+..|...+..++|+|||+.++++  .++.|++||+.+++.......+                   
T Consensus        95 ~~~d~~~~~--~~~l~~~~~~~~~~~~SPdG~~la~~--~~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~  170 (740)
T 4a5s_A           95 DIYDLNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVF  170 (740)
T ss_dssp             EEEETTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTS
T ss_pred             EEEECCCCc--EEEcccCCCcceeeEECCCCCEEEEE--ECCeEEEEECCCCceEEEcCCCCccceecCcccccccchhc
Confidence            799999876  34566778889999999999877654  3789999999887755432111                   


Q ss_pred             --ceEEEEecCCCEEEEEEcCC------------------------------------cEEEEECCC---C---eEEEEE
Q 003271          683 --ATQMRFQPRLGRILAAAIEN------------------------------------YISILDVET---Q---VCRLKL  718 (835)
Q Consensus       683 --i~~l~fsp~~~~ll~~s~dg------------------------------------~I~IwDl~t---~---~~i~~l  718 (835)
                        ...+.|+|||+.|+.++.|.                                    .|++||+.+   +   +.. .+
T Consensus       171 ~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~-~l  249 (740)
T 4a5s_A          171 SAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSI-QI  249 (740)
T ss_dssp             SSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEE-EE
T ss_pred             CCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEE-Ee
Confidence              13488999999999876432                                    488899988   7   333 33


Q ss_pred             c------CCCCCeEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCC------cceEEEeecCCCceE-----EEEEeC
Q 003271          719 Q------GHKNQVHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSK------GECIHELSCTGNKFH-----SCVFHP  776 (835)
Q Consensus       719 ~------~h~~~I~sl~fspdg~~Lasgs--D---g~I~IwDl~t~~~------~~~i~~l~~~~~~V~-----sv~fsp  776 (835)
                      .      +|...+..++|+|||++++...  +   ..|++||+.++..      ...+. -..+...+.     .++|+|
T Consensus       250 ~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~-~~~~~~~v~~~~~~~p~fsp  328 (740)
T 4a5s_A          250 TAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHI-EMSTTGWVGRFRPSEPHFTL  328 (740)
T ss_dssp             CCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEE-EECSSSCSSSSSCCCCEECT
T ss_pred             cCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEee-eccCCceEccCcCCCceEcC
Confidence            3      3777899999999999776654  2   2799999988741      11111 133444433     688999


Q ss_pred             CCCEEE-EEEc-CC--eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          777 TFPSLL-VIGC-YE--TLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       777 dg~~L~-sgs~-dg--~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                      ||+.|+ ..+. +|  .|++||+.+++...+......|..+.+ +|++.|+..+.
T Consensus       329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~~lT~g~~~v~~~~~-~d~~~i~f~~~  382 (740)
T 4a5s_A          329 DGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVIGIEA-LTSDYLYYISN  382 (740)
T ss_dssp             TSSEEEEEEECTTSCEEEEEEETTCSSCEESCCSSSCEEEEEE-ECSSEEEEEES
T ss_pred             CCCEEEEEEEcCCCceEEEEEECCCCceEecccCCEEEEEEEE-EeCCEEEEEEe
Confidence            999877 6654 33  799999999888877766667776653 44665554443

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.77  E-value=1.6e-17  Score=189.16  Aligned_cols=210  Identities=14%  Similarity=0.157  Sum_probs=159.3

Q ss_pred             CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC---------cee-----EEeecCCCC
Q 003271          577 KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD---------YSL-----RTFTGHSTT  642 (835)
Q Consensus       577 g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~---------~~~-----~~~~~h~~~  642 (835)
                      +.|++|+....       .+...+..+++++++.+|++++.|+ |+||+.....         ..+     .....+...
T Consensus        23 ~~vri~~~~~~-------~~~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (434)
T 2oit_A           23 KKVRIFDSPEE-------LPKERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFP   94 (434)
T ss_dssp             CEEECSCCCSS-------CCCSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSC
T ss_pred             eeEEecCCccc-------cCCCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCc
Confidence            56888865321       2345688999999999999999998 8998753210         001     112235678


Q ss_pred             eEEEEEcCCCCcEEE---EEeCCCcEEEEECCCC--------ee---eeEe---ecCceEEEEecC-CCEEEEEEcCCcE
Q 003271          643 VMSLDFHPSKEDLLC---SCDNNSEIRYWSINNG--------SC---AGVF---KSGATQMRFQPR-LGRILAAAIENYI  704 (835)
Q Consensus       643 V~sl~fsp~g~~ll~---sgs~Dg~I~iwDl~s~--------~~---~~~~---~~~i~~l~fsp~-~~~ll~~s~dg~I  704 (835)
                      |.+++|+|+++.+++   +++.|+.|++||+.+.        +.   +..+   ...+.+++|+|+ +..|++++.|+.|
T Consensus        95 v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v  174 (434)
T 2oit_A           95 IHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSI  174 (434)
T ss_dssp             EEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCE
T ss_pred             ccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeE
Confidence            999999999886655   7888999999998654        22   2222   356999999998 7889999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-------CCceEEEEEeC
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT-------GNKFHSCVFHP  776 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-------~~~V~sv~fsp  776 (835)
                      ++||++++..+....+|...|.+++|+|+|++|++++ |+.|++||++ +   .....+..+       ...|.++.|++
T Consensus       175 ~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~---~~~~~~~~~~~~~~~~~~~v~~v~w~~  250 (434)
T 2oit_A          175 AVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-L---QEKKVIPCPPFYESDHPVRVLDVLWIG  250 (434)
T ss_dssp             EEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-C---CEEEEECCCTTCCTTSCEEEEEEEEEE
T ss_pred             EEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-C---cccccccCCcccCCCCceeEEEEEEec
Confidence            9999999987777778999999999999999999999 9999999998 3   233333332       23789999999


Q ss_pred             CCCEEEEEE-cCC------eEEEEEcCCC
Q 003271          777 TFPSLLVIG-CYE------TLELWNMTEN  798 (835)
Q Consensus       777 dg~~L~sgs-~dg------~I~IwDl~~~  798 (835)
                      ++.++++.+ .+|      .+++|++...
T Consensus       251 ~~~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          251 TYVFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             TTEEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             CceEEEEEccCCCccCCCCceEEEEeccC
Confidence            888776544 332      4999999765

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.76  E-value=1.8e-16  Score=192.28  Aligned_cols=293  Identities=14%  Similarity=0.093  Sum_probs=196.2

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCC-----EEEEEEeCCCCEEEEEeCC-----
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSK-----VESCHFSPDGKLLATGGHD-----  576 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~-----V~sl~fSpdg~~Lasgs~D-----  576 (835)
                      .+++++  |+.|.+|....+.                   +...+.+|...     ...++|||||++|++++.+     
T Consensus        29 ~~~~~~--~~~i~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r   87 (740)
T 4a5s_A           29 EYLYKQ--ENNILVFNAEYGN-------------------SSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWR   87 (740)
T ss_dssp             EEEEEE--TTEEEEEETTTCC-------------------EEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSS
T ss_pred             cEEEEc--CCcEEEEECCCCc-------------------eEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEE
Confidence            577775  8899999543331                   12334455432     3458899999999998876     


Q ss_pred             ----CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe---------
Q 003271          577 ----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV---------  643 (835)
Q Consensus       577 ----g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V---------  643 (835)
                          +.+.+||+.+++.. .+..|...+..++|+|||+.||.+. |+.|++||+.++.....+..++...+         
T Consensus        88 ~~~~~~~~~~d~~~~~~~-~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~  165 (740)
T 4a5s_A           88 HSYTASYDIYDLNKRQLI-TEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVY  165 (740)
T ss_dssp             SCEEEEEEEEETTTTEEC-CSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHH
T ss_pred             EccceEEEEEECCCCcEE-EcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccc
Confidence                56679999998865 4667888999999999999999885 68999999987764322233333323         


Q ss_pred             --------EEEEEcCCCCcEEEEEeCCC-----------------------------------cEEEEECCC---C---e
Q 003271          644 --------MSLDFHPSKEDLLCSCDNNS-----------------------------------EIRYWSINN---G---S  674 (835)
Q Consensus       644 --------~sl~fsp~g~~ll~sgs~Dg-----------------------------------~I~iwDl~s---~---~  674 (835)
                              ..+.|+|||+.+++....++                                   .|++||+.+   +   +
T Consensus       166 ~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~  245 (740)
T 4a5s_A          166 EEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNAT  245 (740)
T ss_dssp             HHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCC
T ss_pred             cchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcce
Confidence                    35899999997766543222                                   588899988   7   3


Q ss_pred             eeeEee--------cCceEEEEecCCCEEEEEEcC----CcEEEEECCCCe----EEE--EE--cCCCCCeE-----EEE
Q 003271          675 CAGVFK--------SGATQMRFQPRLGRILAAAIE----NYISILDVETQV----CRL--KL--QGHKNQVH-----SVC  729 (835)
Q Consensus       675 ~~~~~~--------~~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~----~i~--~l--~~h~~~I~-----sl~  729 (835)
                      ......        ..+..++|+|++..++.....    ..|.+||+.+++    +..  .+  ..|...|.     .+.
T Consensus       246 ~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~  325 (740)
T 4a5s_A          246 SIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPH  325 (740)
T ss_dssp             EEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCE
T ss_pred             EEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCce
Confidence            322211        126788999998866665443    369999998876    221  11  34555554     789


Q ss_pred             EcCCCCEEE-EEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-------CeEEEEEcCC
Q 003271          730 WNTSGEYLA-SVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-------ETLELWNMTE  797 (835)
Q Consensus       730 fspdg~~La-sgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-------g~I~IwDl~~  797 (835)
                      |+|||+.|+ ..+  +|  .|++||+.++   .+ ..+......+..+.. ++++.|+..+..       ..|+..++.+
T Consensus       326 fspDG~~l~~~~s~~~G~~~l~~~~~~~~---~~-~~lT~g~~~v~~~~~-~d~~~i~f~~~~~~~~~~~~~ly~v~~~g  400 (740)
T 4a5s_A          326 FTLDGNSFYKIISNEEGYRHICYFQIDKK---DC-TFITKGTWEVIGIEA-LTSDYLYYISNEYKGMPGGRNLYKIQLID  400 (740)
T ss_dssp             ECTTSSEEEEEEECTTSCEEEEEEETTCS---SC-EESCCSSSCEEEEEE-ECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred             EcCCCCEEEEEEEcCCCceEEEEEECCCC---ce-EecccCCEEEEEEEE-EeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence            999999877 665  44  7888998765   22 234444555655543 446667666654       2566666666


Q ss_pred             CcEE-Eecc----CCCCeeEEEEeCCCCEEEEEEC
Q 003271          798 NKTL-TLSA----HDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       798 ~~~~-~l~~----h~~~V~~la~spdg~~LaSgs~  827 (835)
                      +... .+..    ....+..+.|+|++++++....
T Consensus       401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s  435 (740)
T 4a5s_A          401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCS  435 (740)
T ss_dssp             EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEEC
T ss_pred             CCcceeeccccCCCCCceEEEEECCCCCEEEEEeC
Confidence            5543 3331    2467889999999997765543

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.76  E-value=2.1e-16  Score=175.18  Aligned_cols=262  Identities=8%  Similarity=0.045  Sum_probs=189.0

Q ss_pred             CCCEEEEEe------CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC----------CCeEEEEecCCC
Q 003271          566 DGKLLATGG------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA----------DRTVRVWDTENP  629 (835)
Q Consensus       566 dg~~Lasgs------~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~----------Dg~I~IWDl~t~  629 (835)
                      +++++++..      .|+.|.+||..+++.+..+..+..+  .++|+||+++|++++.          ++.|.+||+.+.
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            555655543      3789999999999999888776655  8999999999999873          678999999876


Q ss_pred             CceeEEeec------CCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-eecC-ceEEEEecCC-CEEEEEE
Q 003271          630 DYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKSG-ATQMRFQPRL-GRILAAA  699 (835)
Q Consensus       630 ~~~~~~~~~------h~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~-~~~~-i~~l~fsp~~-~~ll~~s  699 (835)
                      +. +..+..      +......++|+|+|++++++... ++.|.+||+.+++.+.. +..+ ...+.+.|++ ..+++.+
T Consensus        92 ~~-~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~  170 (361)
T 2oiz_A           92 TF-EKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTIC  170 (361)
T ss_dssp             CE-EEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEE
T ss_pred             cE-EEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEEC
Confidence            64 444432      23456789999999977766654 68999999999988877 6543 2335677765 5778888


Q ss_pred             cCCcEEEEECCC-CeEEEEE------cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-----
Q 003271          700 IENYISILDVET-QVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----  766 (835)
Q Consensus       700 ~dg~I~IwDl~t-~~~i~~l------~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-----  766 (835)
                      .||.+.+|++.. ++.....      ..+..++ .+.+++++..++..+ ++.|.++|+..... ..+..+....     
T Consensus       171 ~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~-~~~~~~~~~~~~~~~  248 (361)
T 2oiz_A          171 GDGGLLTINLGEDGKVASQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEV-KVDGPWSLLNDEDKA  248 (361)
T ss_dssp             TTSSEEEEEECTTSSEEEEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSC-EEEEEEESCCHHHHH
T ss_pred             CCCcEEEEEECCCCcEeeeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCc-eecccccccCccccc
Confidence            999999999865 5544221      1122222 334457777777667 88999999976421 2222221100     


Q ss_pred             -----CceEEEEEeCCCCEEEEEEc-----------CCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271          767 -----NKFHSCVFHPTFPSLLVIGC-----------YETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       767 -----~~V~sv~fspdg~~L~sgs~-----------dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                           .....++|+|++..++++..           .+.|.+||+.+++.+ .+..+.  +.+|+|+|||++|++++. +
T Consensus       249 ~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~  325 (361)
T 2oiz_A          249 KNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQQRNLMLTLDG-G  325 (361)
T ss_dssp             TTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEETTTTEEEEECS-S
T ss_pred             cccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECCCCCEEEEeCC-C
Confidence                 11123689999998888764           348999999999988 455555  999999999999998887 9


Q ss_pred             cEEEeC
Q 003271          830 CVKIWK  835 (835)
Q Consensus       830 ~V~IWd  835 (835)
                      .|.|||
T Consensus       326 ~v~v~D  331 (361)
T 2oiz_A          326 NVNVYD  331 (361)
T ss_dssp             CEEEEE
T ss_pred             eEEEEE
Confidence            999996

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.75  E-value=8.7e-17  Score=191.74  Aligned_cols=279  Identities=10%  Similarity=0.050  Sum_probs=195.2

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEE--eCCCeEEEEEcCCCeEEEEeccCCCCeE---------EEEEC--CCCCE-EEEE
Q 003271          550 LIPASTSKVESCHFSPDGKLLATG--GHDKKAVLWCTESFTVKSTLEEHTQWIT---------DVRFS--PSLSR-LATS  615 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasg--s~Dg~I~VWd~~t~~~i~~l~~h~~~V~---------sv~fs--pdg~~-Latg  615 (835)
                      .+.+|...|.+++|++++-++++.  +.++...||....+.....+..|...+.         .+.|+  ||++. |+.+
T Consensus        18 ~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~   97 (662)
T 3azo_A           18 LVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEESALPAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFT   97 (662)
T ss_dssp             HHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEEESSCTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEE
T ss_pred             HHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcceeCCCCccccccccccCCccceeeeecCCCeEEEEE
Confidence            355788899999999887666766  5588999998655555667777776666         66665  99998 7766


Q ss_pred             EC-CCeEEEEecC--C-CCceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeCC---------CcEEEEECCC-----
Q 003271          616 SA-DRTVRVWDTE--N-PDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNN---------SEIRYWSINN-----  672 (835)
Q Consensus       616 s~-Dg~I~IWDl~--t-~~~~~~~~~~-----h~~~V~sl~fsp~g~~ll~sgs~D---------g~I~iwDl~s-----  672 (835)
                      +. +..|.+|++.  . +.  ...+..     |...+.+++|+|+|+.++++....         ..|++||+.+     
T Consensus        98 ~~~~~~l~~~~~~~~g~~~--~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  175 (662)
T 3azo_A           98 HFGDQRLYAFEPDAPGGAV--PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAAD  175 (662)
T ss_dssp             BTTTCCEEEECTTSTTCCC--CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTC
T ss_pred             ECCCCeEEEEcCCCCCCCC--CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcccc
Confidence            54 5567777765  2 33  344544     667789999999998666554321         5899999988     


Q ss_pred             -CeeeeEe-e--cCceEEEEecCCCEEEEEEcCC--------cEEEEECC-CC---eEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          673 -GSCAGVF-K--SGATQMRFQPRLGRILAAAIEN--------YISILDVE-TQ---VCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       673 -~~~~~~~-~--~~i~~l~fsp~~~~ll~~s~dg--------~I~IwDl~-t~---~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                       ++..... .  ..+..++|+|+|++|++++.++        .|++||+. ++   +......+|...+..+.|+|||++
T Consensus       176 ~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l  255 (662)
T 3azo_A          176 RSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSL  255 (662)
T ss_dssp             GGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCE
T ss_pred             CCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeE
Confidence             5544333 2  2366788999999999888653        79999999 56   444444556788999999999997


Q ss_pred             EEEEe-CC--eEEEEEcCCCCCcceEEEeecCCCc--------eEEEEEeCCCCEEEEEEcCCeEEEE--EcCCCcEEEe
Q 003271          737 LASVS-DE--LVRVWSIGSGSKGECIHELSCTGNK--------FHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL  803 (835)
Q Consensus       737 Lasgs-Dg--~I~IwDl~t~~~~~~i~~l~~~~~~--------V~sv~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l  803 (835)
                      ++++. ++  .|++||+.++   ........+...        +..++|+|++.+++++.. +.++||  |+.+++...+
T Consensus       256 ~~~~~~~~~~~l~~~~~~~~---~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~~~~l  331 (662)
T 3azo_A          256 IVATDRTGWWNLHRVDPATG---AATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGELVDA  331 (662)
T ss_dssp             EEEECTTSSCEEEEECTTTC---CEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTEEEEC
T ss_pred             EEEECCCCCeEEEEEECCCC---ceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCcEEEe
Confidence            77776 77  6666666554   222222222111        467899999999988888 888888  7777777777


Q ss_pred             ccCCCCeeEE-EEeCCCCEEEEEECCCcEEEe
Q 003271          804 SAHDKLVSSL-AASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       804 ~~h~~~V~~l-a~spdg~~LaSgs~DG~V~IW  834 (835)
                      ..|...+..+ +++.+.-++++++.+....||
T Consensus       332 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~  363 (662)
T 3azo_A          332 AGPWTEWAATLTVSGTRAVGVAASPRTAYEVV  363 (662)
T ss_dssp             CSSCCEEEEEEEEETTEEEEEEEETTEEEEEE
T ss_pred             cCCCCeEEEEEecCCCEEEEEEcCCCCCCEEE
Confidence            7888888877 554433344555666555554

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.75  E-value=2.4e-16  Score=174.80  Aligned_cols=260  Identities=10%  Similarity=0.100  Sum_probs=191.9

Q ss_pred             EecCCCCCEEEEEEeCCCCEEEEEeC----------CCeEEEEEcCCCeEEEEeccC------CCCeEEEEECCCCCEEE
Q 003271          550 LIPASTSKVESCHFSPDGKLLATGGH----------DKKAVLWCTESFTVKSTLEEH------TQWITDVRFSPSLSRLA  613 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~~Lasgs~----------Dg~I~VWd~~t~~~i~~l~~h------~~~V~sv~fspdg~~La  613 (835)
                      .+..+..+  .++|+|||++|+++..          ++.|.+||..+++.+.++...      ......++|+|||++|+
T Consensus        46 ~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~  123 (361)
T 2oiz_A           46 MVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIV  123 (361)
T ss_dssp             EEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEE
T ss_pred             EecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEE
Confidence            44455444  8999999999998863          678999999999988877542      34567899999999999


Q ss_pred             EEEC--CCeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEe------ec--
Q 003271          614 TSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVF------KS--  681 (835)
Q Consensus       614 tgs~--Dg~I~IWDl~t~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~~------~~--  681 (835)
                      ++..  ++.|.+||+.+.+. +.. +. +. ....+.+.|++...+++.+.||.+.+|++.. ++.....      ..  
T Consensus       124 v~n~~~~~~v~v~d~~~~~~-~~~~i~-~~-~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~  200 (361)
T 2oiz_A          124 LQNASPATSIGIVDVAKGDY-VEDVTA-AA-GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKD  200 (361)
T ss_dssp             EEEESSSEEEEEEETTTTEE-EEEEGG-GT-TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTT
T ss_pred             EECCCCCCeEEEEECCCCcE-EEEEec-CC-CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCC
Confidence            9874  58999999998754 444 33 22 2234667888767778888999999999865 5544211      11  


Q ss_pred             CceEEEEecCCCEEEEEEcCCcEEEEECCCCe--EEEEEcC------CC----CCeEEEEEcCCCCEEEEEe--------
Q 003271          682 GATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG------HK----NQVHSVCWNTSGEYLASVS--------  741 (835)
Q Consensus       682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i~~l~~------h~----~~I~sl~fspdg~~Lasgs--------  741 (835)
                      ....+.+.+++..++..+.++.|+++|+....  .+..+..      +.    .....++|++++..++++.        
T Consensus       201 ~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~  280 (361)
T 2oiz_A          201 DPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGT  280 (361)
T ss_dssp             SCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTC
T ss_pred             CceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCccc
Confidence            11223346777788888888999999997543  2222211      01    1112378999988777653        


Q ss_pred             ----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC--cEEEe-ccCCCCeeEEE
Q 003271          742 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN--KTLTL-SAHDKLVSSLA  814 (835)
Q Consensus       742 ----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~--~~~~l-~~h~~~V~~la  814 (835)
                          .+.|.+||+.+.   +.+.++..+.  +..++|+|++++|++++. +.|.+||..++  +++.. ..+......++
T Consensus       281 ~~~~~~~v~viD~~t~---~~v~~i~~~~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~  354 (361)
T 2oiz_A          281 HKFPAAEIWVMDTKTK---QRVARIPGRD--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQ  354 (361)
T ss_dssp             TTCCCSEEEEEETTTT---EEEEEEECTT--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEE
T ss_pred             ccCCCceEEEEECCCC---cEEEEEecCC--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEE
Confidence                238999999988   7888887766  999999999999998887 99999999999  88854 57888899999


Q ss_pred             EeCCCC
Q 003271          815 ASTVNG  820 (835)
Q Consensus       815 ~spdg~  820 (835)
                      ++|+|+
T Consensus       355 ~~p~G~  360 (361)
T 2oiz_A          355 FHPVGG  360 (361)
T ss_dssp             ECCCSC
T ss_pred             ecCCCC
Confidence            999985

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.74  E-value=8.3e-16  Score=167.44  Aligned_cols=251  Identities=11%  Similarity=0.096  Sum_probs=176.7

Q ss_pred             CEEEEEEeCCCCEEEEEe---------CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC---C--eEE
Q 003271          557 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD---R--TVR  622 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs---------~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D---g--~I~  622 (835)
                      .|..++|  ||++|+...         .++.|++||+.+++... +    ..+.+++|+|||++|+.++.+   +  .|.
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~-l----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~   88 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF-I----ENATMPRISPDGKKIAFMRANEEKKVSEIW   88 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE-E----ESCEEEEECTTSSEEEEEEEETTTTEEEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE-c----ccCCCeEECCCCCEEEEEEeccCCCcceEE
Confidence            4667777  888877642         25689999999887543 3    568899999999999888754   3  477


Q ss_pred             EEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC--------------------------CCcEEEEECCCCeee
Q 003271          623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN--------------------------NSEIRYWSINNGSCA  676 (835)
Q Consensus       623 IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~--------------------------Dg~I~iwDl~s~~~~  676 (835)
                      +||+.+++. .. +..+.. +.++.|+|+++.+++++..                          ...|++||+.+++.+
T Consensus        89 ~~~~~~g~~-~~-l~~~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~  165 (347)
T 2gop_A           89 VADLETLSS-KK-ILEAKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVI  165 (347)
T ss_dssp             EEETTTTEE-EE-EEEESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEE
T ss_pred             EEECCCCce-EE-EEcCCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEE
Confidence            788876542 33 333334 9999999999877766532                          357999999988763


Q ss_pred             eEee-cCceEEEEecCCCEEEEEEcCC---------cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---
Q 003271          677 GVFK-SGATQMRFQPRLGRILAAAIEN---------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---  742 (835)
Q Consensus       677 ~~~~-~~i~~l~fsp~~~~ll~~s~dg---------~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D---  742 (835)
                      ..+. ..+..+.|+|++ .++++..+.         .|+++|  +++... +..+ ..+.++  +|+|++|+.++ +   
T Consensus       166 ~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~-l~~~-~~~~~~--spdg~~l~~~~~~~~~  238 (347)
T 2gop_A          166 EEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWE--DGKEEK-MFEK-VSFYAV--DSDGERILLYGKPEKK  238 (347)
T ss_dssp             EEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEE--TTEEEE-EEEE-ESEEEE--EECSSCEEEEECCSSS
T ss_pred             eeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeC--CCceEE-eccC-cceeeE--CCCCCEEEEEEccccC
Confidence            3222 278889999998 666665432         355555  555433 3334 455544  89999887776 3   


Q ss_pred             -----CeEEEEEcCCCCCcceEEEeecCCCceEE-EEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEe
Q 003271          743 -----ELVRVWSIGSGSKGECIHELSCTGNKFHS-CVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS  816 (835)
Q Consensus       743 -----g~I~IwDl~t~~~~~~i~~l~~~~~~V~s-v~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~s  816 (835)
                           ..|.+||  ++   ........+...+.. +.|+ ++ .+++++.++.++|| +.+++...+..+...|.+++|+
T Consensus       239 ~~~~~~~l~~~d--~~---~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s  310 (347)
T 2gop_A          239 YMSEHNKLYIYD--GK---EVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVD  310 (347)
T ss_dssp             CCCSSCEEEEEC--SS---CEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEES
T ss_pred             CccccceEEEEC--CC---ceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeee
Confidence                 2677777  33   333333344567776 8999 88 88888999999999 8777777666778889999999


Q ss_pred             CCCCEEEEEECCCcE-EEe
Q 003271          817 TVNGMVASASHDKCV-KIW  834 (835)
Q Consensus       817 pdg~~LaSgs~DG~V-~IW  834 (835)
                      +  .++++++.++.. .||
T Consensus       311 ~--~~~~~~~~~~~~~~l~  327 (347)
T 2gop_A          311 E--IVVYLKETATRLRELF  327 (347)
T ss_dssp             S--SEEEEEECSSSCCEEE
T ss_pred             C--cEEEEEcCCCChHHhe
Confidence            9  677787777654 555

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.73  E-value=1.1e-15  Score=166.67  Aligned_cols=238  Identities=15%  Similarity=0.116  Sum_probs=181.5

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCC------------------------CeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCC
Q 003271          555 TSKVESCHFSPDGKLLATGGHD------------------------KKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSL  609 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~D------------------------g~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg  609 (835)
                      -+.|.+++++++|+++++...+                        +.|.+||..+++.+..+. ++-.....|++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g  102 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDG  102 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTS
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCC
Confidence            4569999999999999888777                        479999999998887664 445678999999999


Q ss_pred             CEEEEEECCCeEEEEecCCCCceeEEe---------ecCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEe
Q 003271          610 SRLATSSADRTVRVWDTENPDYSLRTF---------TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVF  679 (835)
Q Consensus       610 ~~Latgs~Dg~I~IWDl~t~~~~~~~~---------~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~  679 (835)
                      +++++...++.|++||.......+..+         ..+......|+|+|++..++++.+ .++.|++|| .+++.+..+
T Consensus       103 ~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~  181 (329)
T 3fvz_A          103 NYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQW  181 (329)
T ss_dssp             CEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEE
T ss_pred             CEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEe
Confidence            988888889999999987543234444         234457899999994455777775 689999999 456666655


Q ss_pred             e-------------cCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEE---
Q 003271          680 K-------------SGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV---  740 (835)
Q Consensus       680 ~-------------~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~Lasg---  740 (835)
                      .             .....++++|+++.++++. .++.|++||..+++.+..+.  .+...+.+++|+| +..+++.   
T Consensus       182 ~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~p-g~~~~~~g~~  260 (329)
T 3fvz_A          182 GEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIP-GFLFAVNGKP  260 (329)
T ss_dssp             CEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEET-TEEEEEECCC
T ss_pred             ccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecC-CEEEEeCCCE
Confidence            3             1267899999966665555 56899999999888888774  4567889999999 4333332   


Q ss_pred             ----e-CCeEEEEEcCCCCCcceEEEe---ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          741 ----S-DELVRVWSIGSGSKGECIHEL---SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       741 ----s-Dg~I~IwDl~t~~~~~~i~~l---~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                          . +..|++||+.++   ..+..+   ..+...+..++++|+|..+++...++.|++|++..
T Consensus       261 ~v~~~~~~~v~~~~~~~g---~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          261 YFGDQEPVQGFVMNFSSG---EIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             CTTCSCCCCEEEEETTTC---CEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEE
T ss_pred             EeccCCCcEEEEEEcCCC---eEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCc
Confidence                2 348999999887   566665   35667799999999996666666678999999754

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.73  E-value=9.9e-16  Score=166.16  Aligned_cols=266  Identities=8%  Similarity=0.033  Sum_probs=189.9

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      ..|.+++|++++..++..+.++.+++|   .++....+..+...+.+++|++++++++++..++.|.+||..++.. ...
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~-~~~   81 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTI---TAEPWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRP   81 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEE---ECEEEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEE
T ss_pred             cccceeeecCCccceeEEeecccCccc---ccceeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcE-EEE
Confidence            347788999988887777888999999   4556667777778889999999999888888899999999987663 333


Q ss_pred             eecCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEc------
Q 003271          636 FTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAI------  700 (835)
Q Consensus       636 ~~~h~~~V~sl~fsp~g~~ll~sgs~D----g~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~------  700 (835)
                      ...+...+.+++|++++. ++++...+    +.|.+||..++.....+.     ..+..++++|++..+++...      
T Consensus        82 ~~~~~~~~~~i~~~~dg~-l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~  160 (333)
T 2dg1_A           82 FVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNP  160 (333)
T ss_dssp             EECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBC
T ss_pred             eeCCCCCcceEEECCCCc-EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCC
Confidence            335667899999999986 55565555    689999998876543332     23778999999876665443      


Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCC-CCCcceE-----EEeecCCCceEEE
Q 003271          701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGS-GSKGECI-----HELSCTGNKFHSC  772 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t-~~~~~~i-----~~l~~~~~~V~sv  772 (835)
                      .+.|..||..+++..... .+...+.+++|++++++|+.+.  ++.|.+||+.+ +.....+     ..+.. ...+..+
T Consensus       161 ~~~l~~~~~~~~~~~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i  238 (333)
T 2dg1_A          161 LGGVYYVSPDFRTVTPII-QNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG-HEGPDSC  238 (333)
T ss_dssp             CEEEEEECTTSCCEEEEE-EEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS-SSEEEEE
T ss_pred             CceEEEEeCCCCEEEEee-cCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC-CCCCCce
Confidence            256777777665544322 2334578999999998665554  78999999964 2211111     11111 2467889


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCC------CeeEEEEeCCCCEEEEEECC
Q 003271          773 VFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDK------LVSSLAASTVNGMVASASHD  828 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~------~V~~la~spdg~~LaSgs~D  828 (835)
                      ++++++..+++...++.|.+||........+..+..      .+.+++|++|++.|+.++.+
T Consensus       239 ~~d~~G~l~v~~~~~~~v~~~d~~g~~~~~~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~  300 (333)
T 2dg1_A          239 CIDSDDNLYVAMYGQGRVLVFNKRGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSND  300 (333)
T ss_dssp             EEBTTCCEEEEEETTTEEEEECTTSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             EECCCCCEEEEEcCCCEEEEECCCCCEEEEEEcCCCccccccCcceEEECCCCCEEEEEeCc
Confidence            999999977777778899999985433334433332      68999999998777655554

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.72  E-value=4.9e-16  Score=171.84  Aligned_cols=243  Identities=12%  Similarity=0.104  Sum_probs=167.7

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEE--ECCCCCEEEEEE----------
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVR--FSPSLSRLATSS----------  616 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~--fspdg~~Latgs----------  616 (835)
                      ....+|...+.+++|+|||+.|++++.++.|++||+.+++....+..+...+....  +++++++++...          
T Consensus        74 ~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~  153 (388)
T 3pe7_A           74 QLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLT  153 (388)
T ss_dssp             ECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCC
T ss_pred             EeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCccccccc
Confidence            33445665666788999999999999999999999999988777766666665444  489999887532          


Q ss_pred             ------------CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC-CCCcEEEEEeC-----CCcEEEEECCCCeeeeE
Q 003271          617 ------------ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDN-----NSEIRYWSINNGSCAGV  678 (835)
Q Consensus       617 ------------~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp-~g~~ll~sgs~-----Dg~I~iwDl~s~~~~~~  678 (835)
                                  .+..|++||+.+++  ...+..+...+..+.|+| +++.++++...     ...|+++|+..+.....
T Consensus       154 ~~~~~~~~~~~~~~~~l~~~d~~~g~--~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l  231 (388)
T 3pe7_A          154 DWKKFHEFYFTKPCCRLMRVDLKTGE--STVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV  231 (388)
T ss_dssp             SHHHHHHHGGGCCCEEEEEEETTTCC--EEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred             ccchhhhhhccCCcceEEEEECCCCc--eEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence                        44789999999875  455556677899999999 88766655542     34788899876554333


Q ss_pred             eec----CceEEEEecCCCEEEEEEcC-C----cEEEEECCCCeEEE--EEcCCCCC---eEEEEEcCCCCEEEEE----
Q 003271          679 FKS----GATQMRFQPRLGRILAAAIE-N----YISILDVETQVCRL--KLQGHKNQ---VHSVCWNTSGEYLASV----  740 (835)
Q Consensus       679 ~~~----~i~~l~fsp~~~~ll~~s~d-g----~I~IwDl~t~~~i~--~l~~h~~~---I~sl~fspdg~~Lasg----  740 (835)
                      ...    .+..++|+|+++.|+..+.+ +    .|++||+.+++...  .+.++...   ...++|+|||+.|+..    
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  311 (388)
T 3pe7_A          232 KTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDD  311 (388)
T ss_dssp             CCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC-------
T ss_pred             eeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeec
Confidence            222    25577899999988665542 2    39999999886433  33321000   1123689999887753    


Q ss_pred             -----e-CCeEEEEEcCCCCCcceEEEeecCCC-----------ceEEEEEeCCCCEEEEEEc-CCe--EEEEEcCC
Q 003271          741 -----S-DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGC-YET--LELWNMTE  797 (835)
Q Consensus       741 -----s-Dg~I~IwDl~t~~~~~~i~~l~~~~~-----------~V~sv~fspdg~~L~sgs~-dg~--I~IwDl~~  797 (835)
                           . +..|++||+.++   . +..+..+..           .+..++|+|+|+.|++++. ++.  |+++++.+
T Consensus       312 ~~~~~~~~~~i~~~d~~~~---~-~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~l~~  384 (388)
T 3pe7_A          312 SGYKIENDPFLYVFNMKNG---T-QHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLATLPE  384 (388)
T ss_dssp             -----CCCCEEEEEETTTT---E-EEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCG
T ss_pred             cccccCCCCEEEEEeccCC---c-eEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEECCh
Confidence                 2 558999999886   2 334444444           5788899999998888775 454  44445543

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=1.7e-14  Score=169.18  Aligned_cols=306  Identities=10%  Similarity=0.017  Sum_probs=219.6

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC-
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE-  585 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-  585 (835)
                      .++++...++.|.+++....                   ..+..+... ..+.++.|+|||++|++++.|+.|.+||+. 
T Consensus       168 ~~~V~~~~~~~V~viD~~t~-------------------~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~  227 (567)
T 1qks_A          168 LFSVTLRDAGQIALIDGSTY-------------------EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM  227 (567)
T ss_dssp             EEEEEETTTTEEEEEETTTC-------------------CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             eEEEEeCCCCeEEEEECCCC-------------------eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCC
Confidence            46666677788888833222                   122233322 246789999999999999999999999996 


Q ss_pred             -CCeEEEEeccCCCCeEEEEEC----CCCCEEEEEEC-CCeEEEEecCCCCceeEEeec----------CCC-CeEEEEE
Q 003271          586 -SFTVKSTLEEHTQWITDVRFS----PSLSRLATSSA-DRTVRVWDTENPDYSLRTFTG----------HST-TVMSLDF  648 (835)
Q Consensus       586 -t~~~i~~l~~h~~~V~sv~fs----pdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~----------h~~-~V~sl~f  648 (835)
                       +++.+..+.... ....++|+    |||++++++++ ++.|.|+|..+.+. +..+..          |.. .+..+.+
T Consensus       228 ~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~-~~~i~~~~~~~~~~~~~p~~rva~i~~  305 (567)
T 1qks_A          228 KEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILA  305 (567)
T ss_dssp             SSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEE
T ss_pred             CCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcE-EEEEeccccccccccccCCCceEEEEE
Confidence             888888886544 46789999    69999888766 58999999888664 433321          222 6788999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCeeee--Eee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcC---
Q 003271          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQG---  720 (835)
Q Consensus       649 sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~---  720 (835)
                      ++++..+++....+|.|.++|....+...  .+.  .....+.|+|+++++++++. ++.|.++|+.+++.+..+.-   
T Consensus       306 s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~  385 (567)
T 1qks_A          306 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQ  385 (567)
T ss_dssp             CSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSS
T ss_pred             cCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCc
Confidence            99888888888888999999998754332  222  23567889999999988875 68999999999988776643   


Q ss_pred             --CCCCeEEEEEcCCC-CEEEEEe--CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCCCEEEEEEc-----
Q 003271          721 --HKNQVHSVCWNTSG-EYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVIGC-----  786 (835)
Q Consensus       721 --h~~~I~sl~fspdg-~~Lasgs--Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-----  786 (835)
                        |.+.-..+ ++|++ .+++++.  ++.|.++|..+...    .+.+.++......-..+.++|++++|++...     
T Consensus       386 ~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~  464 (567)
T 1qks_A          386 TPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA  464 (567)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH
T ss_pred             CCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCc
Confidence              33222222 57874 4445554  68999999987321    3567777765555456789999999999773     


Q ss_pred             --CCeEEEEEcCCC-----c-E-EEec--------cCCCCeeEEEEeCCCCEEEEEEC-----CCcEEEeC
Q 003271          787 --YETLELWNMTEN-----K-T-LTLS--------AHDKLVSSLAASTVNGMVASASH-----DKCVKIWK  835 (835)
Q Consensus       787 --dg~I~IwDl~~~-----~-~-~~l~--------~h~~~V~~la~spdg~~LaSgs~-----DG~V~IWd  835 (835)
                        .+.|.|||+.+.     . . ..+.        .....+..+.|+++|+.+..+..     ++.|.|+|
T Consensus       465 ~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D  535 (567)
T 1qks_A          465 EISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  535 (567)
T ss_dssp             HHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             ccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEE
Confidence              359999999876     2 1 1221        12457899999999997766543     68888875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1e-14  Score=154.78  Aligned_cols=235  Identities=10%  Similarity=0.143  Sum_probs=174.1

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec------cCCCCeEEEEE-CCCCCEEEEEEC-CCeEEEE
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------EHTQWITDVRF-SPSLSRLATSSA-DRTVRVW  624 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~------~h~~~V~sv~f-spdg~~Latgs~-Dg~I~IW  624 (835)
                      +|-..+.+++++++++++++...++.|.+||.+ ++.+..+.      +|...+.++++ .+++.++++... ++.|++|
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~  105 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIY  105 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEE
Confidence            556679999999999988888889999999987 56666653      24467899999 467766666543 8899999


Q ss_pred             ecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEE
Q 003271          625 DTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAA  698 (835)
Q Consensus       625 Dl~t~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~  698 (835)
                      |. ++.. +..+. .+...+.++++++++. ++++...++.|++||.. ++.+..+.     .....+++++++..+++.
T Consensus       106 d~-~g~~-~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          106 NQ-YGQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             CT-TSCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             CC-CCcE-EEEecCccCCCceEEEEeCCCC-EEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            94 4443 44443 3446789999999986 77777778999999965 55555553     236789999997755555


Q ss_pred             EcCCcEEEEECCCCeEEEEEcCC--CCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCCCCCcceEEEeecCC--CceEEE
Q 003271          699 AIENYISILDVETQVCRLKLQGH--KNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGSGSKGECIHELSCTG--NKFHSC  772 (835)
Q Consensus       699 s~dg~I~IwDl~t~~~i~~l~~h--~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t~~~~~~i~~l~~~~--~~V~sv  772 (835)
                      ..++.|++||.. ++.+..+..+  ...+.+++++++|+++++.. ++ .|.+||.. +   ..+..+..+.  ..+..+
T Consensus       182 ~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g---~~~~~~~~~~~~~~~~~i  256 (286)
T 1q7f_A          182 NRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-G---QLISALESKVKHAQCFDV  256 (286)
T ss_dssp             GGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-S---CEEEEEEESSCCSCEEEE
T ss_pred             CCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-C---CEEEEEcccCCCCcceeE
Confidence            568999999985 4555566433  36789999999999888887 65 99999954 3   3455554433  347899


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEEcCCC
Q 003271          773 VFHPTFPSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~IwDl~~~  798 (835)
                      +++|++..+++ +.++.|++|++...
T Consensus       257 ~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          257 ALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             EEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             EECCCCcEEEE-CCCCeEEEEEcccc
Confidence            99999975444 77899999998653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.70  E-value=1.1e-14  Score=154.43  Aligned_cols=231  Identities=13%  Similarity=0.126  Sum_probs=171.0

Q ss_pred             cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee------cCCCCeEEEEEc-CCCCcEEEEEeC-CCcEE
Q 003271          595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFH-PSKEDLLCSCDN-NSEIR  666 (835)
Q Consensus       595 ~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~------~h~~~V~sl~fs-p~g~~ll~sgs~-Dg~I~  666 (835)
                      ++-..+.++++++++.++++...++.|.+||.. +.. +..+.      ++...+.+++++ +++ .++++... ++.|+
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~-~~~~~~~~~~~~~~~~p~~i~~~~~~g-~l~v~~~~~~~~i~  103 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF-KFQFGECGKRDSQLLYPNRVAVVRNSG-DIIVTERSPTHQIQ  103 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE-EEEECCBSSSTTCBSSEEEEEEETTTT-EEEEEECGGGCEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcE-EEEecccCCCcccccCceEEEEEcCCC-eEEEEcCCCCCEEE
Confidence            455678999999999988888889999999987 332 44442      234578999995 554 46656543 88999


Q ss_pred             EEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEE
Q 003271          667 YWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       667 iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~Lasg  740 (835)
                      +|| .+++.+..+.    .....+++++++..+++...++.|.+||.. ++.+..+.  .+...+.+++++++|+++++.
T Consensus       104 ~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~  181 (286)
T 1q7f_A          104 IYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISD  181 (286)
T ss_dssp             EEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEE
T ss_pred             EEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEE
Confidence            999 5566666654    236789999998866665667899999965 45555553  345678999999999987777


Q ss_pred             e-CCeEEEEEcCCCCCcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-eEEEEEcCCCcEEEeccCC--CCeeEEE
Q 003271          741 S-DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-TLELWNMTENKTLTLSAHD--KLVSSLA  814 (835)
Q Consensus       741 s-Dg~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~~~~~~~l~~h~--~~V~~la  814 (835)
                      . ++.|++||...    ..+..+...  ...+..+++++++..+++...++ .|.+||........+..+.  ..+.+++
T Consensus       182 ~~~~~i~~~~~~g----~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~~i~  257 (286)
T 1q7f_A          182 NRAHCVKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQDGQLISALESKVKHAQCFDVA  257 (286)
T ss_dssp             GGGTEEEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTTSCEEEEEEESSCCSCEEEEE
T ss_pred             CCCCEEEEEcCCC----CEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCCCCEEEEEcccCCCCcceeEE
Confidence            6 88999999743    345555433  36789999999998777776675 9999996544333444333  3478999


Q ss_pred             EeCCCCEEEEEECCCcEEEeC
Q 003271          815 ASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       815 ~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++++|+++++ +.|++|+||+
T Consensus       258 ~~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          258 LMDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             EETTTEEEEE-ETTTEEEEEE
T ss_pred             ECCCCcEEEE-CCCCeEEEEE
Confidence            9999987777 6799999995

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.70  E-value=4.5e-15  Score=161.85  Aligned_cols=232  Identities=10%  Similarity=0.076  Sum_probs=173.3

Q ss_pred             CCCeEEEEECCCCCEEEEEECC------------------------CeEEEEecCCCCceeEEee-cCCCCeEEEEEcCC
Q 003271          597 TQWITDVRFSPSLSRLATSSAD------------------------RTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPS  651 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~D------------------------g~I~IWDl~t~~~~~~~~~-~h~~~V~sl~fsp~  651 (835)
                      -+.|.+|+++++|+++++...+                        +.|.+||..+++. +..+. ++-..+..++++++
T Consensus        23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~-~~~~~~~~~~~p~gia~d~~  101 (329)
T 3fvz_A           23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEI-LQSSGKNLFYLPHGLSIDTD  101 (329)
T ss_dssp             CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCE-EEEECTTTCSSEEEEEECTT
T ss_pred             cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeE-EeccCCCccCCceEEEECCC
Confidence            3568999999999999888777                        4799999988775 33333 44567899999999


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCe-eeeEee------------cCceEEEEec-CCCEEEEEE-cCCcEEEEECCCCeEEE
Q 003271          652 KEDLLCSCDNNSEIRYWSINNGS-CAGVFK------------SGATQMRFQP-RLGRILAAA-IENYISILDVETQVCRL  716 (835)
Q Consensus       652 g~~ll~sgs~Dg~I~iwDl~s~~-~~~~~~------------~~i~~l~fsp-~~~~ll~~s-~dg~I~IwDl~t~~~i~  716 (835)
                      ++ ++++...++.|++||..... .+..+.            .....++++| ++..+++.+ .++.|++|| .++..+.
T Consensus       102 g~-l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~  179 (329)
T 3fvz_A          102 GN-YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVT  179 (329)
T ss_dssp             SC-EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEE
T ss_pred             CC-EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEE
Confidence            87 77788888999999986542 344442            1367899999 555555554 489999999 5566666


Q ss_pred             EEcCC----------CCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEee--cCCCceEEEEEeCCCCEEE
Q 003271          717 KLQGH----------KNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       717 ~l~~h----------~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--~~~~~V~sv~fspdg~~L~  782 (835)
                      .+...          -.....|+++++ +.++++.. ++.|++||..++   +.+..+.  .+...+..++|+| +..++
T Consensus       180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G---~~~~~~~~~~~~~~~~~~~~~p-g~~~~  255 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTK---EFVREIKHASFGRNVFAISYIP-GFLFA  255 (329)
T ss_dssp             EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTC---CEEEEECCTTTTTCEEEEEEET-TEEEE
T ss_pred             EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCC---cEEEEEeccccCCCcceeeecC-CEEEE
Confidence            66422          234889999998 66666555 889999999866   5566653  4556788999999 32222


Q ss_pred             EE-------EcCCeEEEEEcCCCcEEEe----ccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          783 VI-------GCYETLELWNMTENKTLTL----SAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       783 sg-------s~dg~I~IwDl~~~~~~~l----~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.       ..+..|++||+.+++.+..    ..+...+.+|+++++|.++++...+++|++|+
T Consensus       256 ~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~  319 (329)
T 3fvz_A          256 VNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFT  319 (329)
T ss_dssp             EECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEEEEE
T ss_pred             eCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEEEEe
Confidence            22       2234899999999998855    36777899999999998888888999999985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.69  E-value=1.8e-13  Score=144.85  Aligned_cols=272  Identities=8%  Similarity=-0.029  Sum_probs=193.6

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +..+...+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++++++.++++...++.|..||.. +
T Consensus        10 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g   87 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKK-G   87 (299)
T ss_dssp             CCSSSCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             CCCcCCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCC-C
Confidence            44566789999999999988777668899999988 55443 223355779999999999888887778899999986 3


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-e---cCceEEEEecCCCEEEEEEcCCcEE
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K---SGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~---~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      .............+.++++++++. ++++...++.|.+||. +++..... .   ..+..+++++++..+++...++.|.
T Consensus        88 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~  165 (299)
T 2z2n_A           88 IIKEYTLPNPDSAPYGITEGPNGD-IWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIG  165 (299)
T ss_dssp             CEEEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEE
T ss_pred             cEEEEeCCCcCCCceeeEECCCCC-EEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEE
Confidence            321222223456789999999875 6666666889999999 55443322 1   2367889999886666555578999


Q ss_pred             EEECCCCeEEEE-EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271          706 ILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       706 IwDl~t~~~i~~-l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s  783 (835)
                      +||. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++.  ............+..+++++++..+++
T Consensus       166 ~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~~~~g~l~v~  241 (299)
T 2z2n_A          166 RITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SGE--ITEFKIPTPNARPHAITAGAGIDLWFT  241 (299)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CCc--EEEEECCCCCCCceeEEECCCCCEEEe
Confidence            9999 6655432 333456788999999999777665 789999998 542  111223334567899999999985444


Q ss_pred             EEcCCeEEEEEcCCCcEEEe--ccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          784 IGCYETLELWNMTENKTLTL--SAHDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       784 gs~dg~I~IwDl~~~~~~~l--~~h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      ...++.|.+||. ++....+  ..+...+.++++ +++.++++...++.++
T Consensus       242 ~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~-~~g~l~v~~~~~~l~~  290 (299)
T 2z2n_A          242 EWGANKIGRLTS-NNIIEEYPIQIKSAEPHGICF-DGETIWFAMECDKIGK  290 (299)
T ss_dssp             ETTTTEEEEEET-TTEEEEEECSSSSCCEEEEEE-CSSCEEEEETTTEEEE
T ss_pred             ccCCceEEEECC-CCceEEEeCCCCCCccceEEe-cCCCEEEEecCCcEEE
Confidence            446789999998 4554433  345678999999 8888777665444433

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.68  E-value=5.2e-14  Score=152.55  Aligned_cols=243  Identities=13%  Similarity=0.122  Sum_probs=174.9

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC----CeEE
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVR  622 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D----g~I~  622 (835)
                      .+..+..+...+.+++|+++|++++++..++.|.+||.++++....+..+...+.+++|+++++++++...+    +.|.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~  115 (333)
T 2dg1_A           36 PWLEISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIF  115 (333)
T ss_dssp             EEEEEESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEE
T ss_pred             eeEEEeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEE
Confidence            344566777788999999999988888889999999999887766554567789999999999888877666    6899


Q ss_pred             EEecCCCCceeEEee--cCCCCeEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEee--cCceEEEEecCC
Q 003271          623 VWDTENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFK--SGATQMRFQPRL  692 (835)
Q Consensus       623 IWDl~t~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~  692 (835)
                      +||..++... ..+.  .+...+.+++++|++. ++++...      .+.|+.||..+++......  .....++|+|++
T Consensus       116 ~~d~~~~~~~-~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg  193 (333)
T 2dg1_A          116 AATENGDNLQ-DIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDE  193 (333)
T ss_dssp             EECTTSCSCE-EEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTS
T ss_pred             EEeCCCCEEE-EEEccCccCCcccceEECCCCC-EEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCC
Confidence            9999876542 2222  2446789999999986 5545442      3567777776555433222  346789999999


Q ss_pred             CEEEEEE-cCCcEEEEECCC-CeEEE--------EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271          693 GRILAAA-IENYISILDVET-QVCRL--------KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       693 ~~ll~~s-~dg~I~IwDl~t-~~~i~--------~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~  761 (835)
                      +.++++. .++.|.+||+.+ +..+.        .+.++ ..+..++++++|+++++.. ++.|.+||.. +   ..+..
T Consensus       194 ~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g---~~~~~  268 (333)
T 2dg1_A          194 KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGH-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-G---YPIGQ  268 (333)
T ss_dssp             SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSS-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-S---CEEEE
T ss_pred             CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCC-CCCCceEECCCCCEEEEEcCCCEEEEECCC-C---CEEEE
Confidence            8776665 468999999963 22111        11222 4678899999999888776 7899999984 3   34555


Q ss_pred             eecCCC------ceEEEEEeCCCCEEEEEEcCC------eEEEEEcC
Q 003271          762 LSCTGN------KFHSCVFHPTFPSLLVIGCYE------TLELWNMT  796 (835)
Q Consensus       762 l~~~~~------~V~sv~fspdg~~L~sgs~dg------~I~IwDl~  796 (835)
                      +..+..      .+.+++|+|++..|++++.++      .|+.+++.
T Consensus       269 ~~~~~~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~  315 (333)
T 2dg1_A          269 ILIPGRDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF  315 (333)
T ss_dssp             EECTTGGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred             EEcCCCccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence            544332      688999999988888777764      45555543

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.68  E-value=1.5e-15  Score=181.00  Aligned_cols=237  Identities=10%  Similarity=0.068  Sum_probs=163.2

Q ss_pred             EEEEe--CCCCE-EEEEeC-CCeEEEEEcC--C-CeEEEEecc-----CCCCeEEEEECCCCCEEEEEECC---------
Q 003271          560 SCHFS--PDGKL-LATGGH-DKKAVLWCTE--S-FTVKSTLEE-----HTQWITDVRFSPSLSRLATSSAD---------  618 (835)
Q Consensus       560 sl~fS--pdg~~-Lasgs~-Dg~I~VWd~~--t-~~~i~~l~~-----h~~~V~sv~fspdg~~Latgs~D---------  618 (835)
                      ++.|+  |||++ |+.++. +..|++|++.  . ++ ...+..     |...+.+++|+|||+.|++++.|         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCc
Confidence            55565  99998 776654 5667777765  2 33 445555     67788999999999999998877         


Q ss_pred             -CeEEEEecCC------CCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeCC-------CcEEEEECC-CC---eeeeEe
Q 003271          619 -RTVRVWDTEN------PDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSIN-NG---SCAGVF  679 (835)
Q Consensus       619 -g~I~IWDl~t------~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~D-------g~I~iwDl~-s~---~~~~~~  679 (835)
                       ..|++||+.+      +.  ...+. .+...+..++|+|||+.+++++...       ..|++||+. ++   +.....
T Consensus       160 ~~~i~~~~~~~~~~~~~~~--~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~  237 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSA--VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLL  237 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGG--SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEE
T ss_pred             eeEEEEEECCCCccccCCc--eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeC
Confidence             5899999987      33  34555 5667788899999998776555432       479999999 56   443333


Q ss_pred             e---cCceEEEEecCCCEEEEEEcCC--cEEEEECCCCeEEEEEcCCCCC--------eEEEEEcCCCCEEEEEeCCeEE
Q 003271          680 K---SGATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQGHKNQ--------VHSVCWNTSGEYLASVSDELVR  746 (835)
Q Consensus       680 ~---~~i~~l~fsp~~~~ll~~s~dg--~I~IwDl~t~~~i~~l~~h~~~--------I~sl~fspdg~~LasgsDg~I~  746 (835)
                      .   ..+..+.|+|++..++++..++  .|++||+.+++.......+...        +.+++|++++.+++++.++.++
T Consensus       238 ~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~~~~~  317 (662)
T 3azo_A          238 GGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGKGAAV  317 (662)
T ss_dssp             EETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBSSSCE
T ss_pred             CCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEcCccE
Confidence            3   3477899999999666666677  6777787777655443333222        5678999999988887767777


Q ss_pred             EE--EcCCCCCcceEEEeecCCCceEEE-EEeCCCCEEEEEEcCC--eEEEEEcCCCcEEEe
Q 003271          747 VW--SIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYE--TLELWNMTENKTLTL  803 (835)
Q Consensus       747 Iw--Dl~t~~~~~~i~~l~~~~~~V~sv-~fspdg~~L~sgs~dg--~I~IwDl~~~~~~~l  803 (835)
                      ||  |+.++    .+..+..+...+..+ +++.+.-.+++++.+.  .|++||+.+++...+
T Consensus       318 l~~~d~~~~----~~~~l~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~l  375 (662)
T 3azo_A          318 LGILDPESG----ELVDAAGPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGRARTI  375 (662)
T ss_dssp             EEEEETTTT----EEEECCSSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCCEEEE
T ss_pred             EEEEECCCC----cEEEecCCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCceEEe
Confidence            88  54443    356677777777766 4443332233334343  677778888876654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.66  E-value=1.3e-14  Score=175.03  Aligned_cols=243  Identities=8%  Similarity=-0.012  Sum_probs=175.4

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCC-----eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCe-------
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDK-----KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------  620 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg-----~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~-------  620 (835)
                      +|...+.+++|||||++||.+..++     .|++||+.+++.+.....+ ..+.+++|+||++.|+.++.++.       
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~  200 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE-ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccC-cccceEEEEeCCCEEEEEEECCcccccccc
Confidence            3445688999999999998876543     8999999999887643222 23678999999999999988776       


Q ss_pred             ---------EEEEecCCCCce-eEEee--cCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEECCC------Ce-eee
Q 003271          621 ---------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN------GS-CAG  677 (835)
Q Consensus       621 ---------I~IWDl~t~~~~-~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~----Dg~I~iwDl~s------~~-~~~  677 (835)
                               |++|++.++... ...+.  .|...+..+.|+|+|+.++++...    +..|++||+.+      +. ...
T Consensus       201 ~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~  280 (710)
T 2xdw_A          201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (710)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceE
Confidence                     999999876532 22222  245568899999999987766642    57899999976      42 233


Q ss_pred             EeecC--ceEEEEecCCCEEEEEEcC----CcEEEEECCCCe--EEEEEcCCCC--CeEEEEEcCCCCEEEEEe-CC--e
Q 003271          678 VFKSG--ATQMRFQPRLGRILAAAIE----NYISILDVETQV--CRLKLQGHKN--QVHSVCWNTSGEYLASVS-DE--L  744 (835)
Q Consensus       678 ~~~~~--i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~--~i~~l~~h~~--~I~sl~fspdg~~Lasgs-Dg--~  744 (835)
                      .+..+  .....|+++++.|++.+..    ..|.+||+.++.  ....+..|..  .+..++|++++.++++.. ++  .
T Consensus       281 ~l~~~~~~~~~~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~  360 (710)
T 2xdw_A          281 KLIDNFEGEYDYVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNT  360 (710)
T ss_dssp             EEECSSSSCEEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEE
T ss_pred             EeeCCCCcEEEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEE
Confidence            33321  2233588999998887764    359999998764  1233334433  688899987777777777 77  5


Q ss_pred             EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCc
Q 003271          745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENK  799 (835)
Q Consensus       745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~  799 (835)
                      |++||+.++   ..+..+..+...+..+.++|++..|++...+    +.|++||+.+++
T Consensus       361 l~~~~~~~g---~~~~~l~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          361 LQLHDLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEEETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEEECCCC---CEEEecCCCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            667777665   4566677677788899999999877655433    589999998877

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.66  E-value=2.4e-14  Score=155.78  Aligned_cols=232  Identities=18%  Similarity=0.207  Sum_probs=163.5

Q ss_pred             CCEEEEEEeCCCCEEEEEeCC---C--eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC------------
Q 003271          556 SKVESCHFSPDGKLLATGGHD---K--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD------------  618 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~D---g--~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D------------  618 (835)
                      ..+.+++|||||++||.++.+   +  .|.+|++.+++.......+ . +.+++|+||++.|+.++.+            
T Consensus        59 ~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~-~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~  136 (347)
T 2gop_A           59 ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAK-N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDD  136 (347)
T ss_dssp             ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEES-E-EEEEEECTTSSEEEEEEECCCC---------
T ss_pred             ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCC-C-ccceeECCCCCEEEEEEccCCCcCCcEEEcc
Confidence            458899999999999887754   3  4888899888776555433 3 9999999999998888642            


Q ss_pred             ---------------CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC---------cEEEEECCCCe
Q 003271          619 ---------------RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS---------EIRYWSINNGS  674 (835)
Q Consensus       619 ---------------g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg---------~I~iwDl~s~~  674 (835)
                                     ..|++||+.++.. +..+.. . .+..+.|+|++  +++++..+.         .|+++|  +++
T Consensus       137 ~~~~~~g~~~~~~~~~~l~~~d~~~~~~-~~~l~~-~-~~~~~~~spdg--~~~~~~~~~~~~~~~~~~~l~~~d--~~~  209 (347)
T 2gop_A          137 VPAWFDDLGFFDGEKTTFWIFDTESEEV-IEEFEK-P-RFSSGIWHRDK--IVVNVPHREIIPQYFKFWDIYIWE--DGK  209 (347)
T ss_dssp             CCCC---------CEEEEEEEETTTTEE-EEEEEE-E-TTCEEEEETTE--EEEEEECCCSSCCSSCCEEEEEEE--TTE
T ss_pred             cceeecCcccccCccceEEEEECCCCeE-EeeecC-C-CcccccCCCCe--EEEEEecccccccccccccEEEeC--CCc
Confidence                           5799999987653 233443 3 78899999998  666665432         455555  555


Q ss_pred             eeeEeecCceEEEEecCCCEEEEEEcC--------CcEEEEECCCCeEEEEEcCCCCCeEE-EEEcCCCCEEEEEe-CCe
Q 003271          675 CAGVFKSGATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQGHKNQVHS-VCWNTSGEYLASVS-DEL  744 (835)
Q Consensus       675 ~~~~~~~~i~~l~fsp~~~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~h~~~I~s-l~fspdg~~Lasgs-Dg~  744 (835)
                      ....... .....++|+++.|++++.+        ..|++||  +++.......+...+.. +.|+ ++ ++++++ ++.
T Consensus       210 ~~~l~~~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~  284 (347)
T 2gop_A          210 EEKMFEK-VSFYAVDSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGS  284 (347)
T ss_dssp             EEEEEEE-ESEEEEEECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTE
T ss_pred             eEEeccC-cceeeECCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCc
Confidence            4433333 3334459999998887754        3688888  56655555556778886 9999 88 777777 889


Q ss_pred             EEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE-EEEEcCCCcEEEeccCCCC
Q 003271          745 VRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL-ELWNMTENKTLTLSAHDKL  809 (835)
Q Consensus       745 I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I-~IwDl~~~~~~~l~~h~~~  809 (835)
                      ++|| +.++   .. ..+..+...|.+++|+|  ..+++++.++.. .||.+. ++...+..|...
T Consensus       285 ~~l~-~~~g---~~-~~~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~~~~lt~~n~~  342 (347)
T 2gop_A          285 VNLY-IWDG---EI-KPIAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GEEKQLTDYNDP  342 (347)
T ss_dssp             EEEE-EESS---SE-EEEECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SSEEECCCTTST
T ss_pred             EEEE-EcCC---ce-EEEecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-CcEEEeccccHh
Confidence            9999 8743   33 33344577899999999  677777777654 677666 666666666554

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.66  E-value=4.2e-14  Score=151.05  Aligned_cols=241  Identities=10%  Similarity=0.064  Sum_probs=176.9

Q ss_pred             EEecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          549 QLIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      ..+..+.....+++|+|+|+ +++++..++.|.+||..++  ...+..+...+.+++|+++++++++...++.|.+||..
T Consensus        21 ~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~   98 (296)
T 3e5z_A           21 RRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQREP   98 (296)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECST
T ss_pred             EEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcCC
Confidence            34456677789999999998 7888888999999999887  55666677889999999999988777777899999997


Q ss_pred             CCCceeEEeec----CCCCeEEEEEcCCCCcEEEE----Ee-------------CCCcEEEEECCCCeeeeEee--cCce
Q 003271          628 NPDYSLRTFTG----HSTTVMSLDFHPSKEDLLCS----CD-------------NNSEIRYWSINNGSCAGVFK--SGAT  684 (835)
Q Consensus       628 t~~~~~~~~~~----h~~~V~sl~fsp~g~~ll~s----gs-------------~Dg~I~iwDl~s~~~~~~~~--~~i~  684 (835)
                      ++... .....    ....+.+++++|+|. ++++    +.             ..+.|..++.. ++......  ....
T Consensus        99 ~g~~~-~~~~~~~~~~~~~~~~i~~d~~G~-l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~  175 (296)
T 3e5z_A           99 GGEWE-SIADSFEGKKLNSPNDVCLAPDGS-LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPN  175 (296)
T ss_dssp             TCCEE-EEECEETTEECCCCCCEEECTTSC-EEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEE
T ss_pred             CCcEE-EEeeccCCCCCCCCCCEEECCCCC-EEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCc
Confidence            76632 22111    123467899999986 5555    22             13467777765 44333222  2357


Q ss_pred             EEEEecCCCEEEEEEcCCcEEEEECC-CCeE---EEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEE
Q 003271          685 QMRFQPRLGRILAAAIENYISILDVE-TQVC---RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIH  760 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~dg~I~IwDl~-t~~~---i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~  760 (835)
                      .++|+|+++.+++.+.++.|++||+. ++..   ...+..+...+.+++++++|+++++. ++.|.+||.. +   ..+.
T Consensus       176 gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~-~~~v~~~~~~-g---~~~~  250 (296)
T 3e5z_A          176 GLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA-GDGVHVLTPD-G---DELG  250 (296)
T ss_dssp             EEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-TTEEEEECTT-S---CEEE
T ss_pred             cEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-CCeEEEECCC-C---CEEE
Confidence            89999999988555567899999997 4544   23333355667789999999987777 8899999986 3   5666


Q ss_pred             EeecCCCceEEEEE-eCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          761 ELSCTGNKFHSCVF-HPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       761 ~l~~~~~~V~sv~f-spdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      .+..+.. +.+++| .|+++.|++++.+ .|..++..+.++.
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~~  290 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGLE  290 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBCC
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccccc
Confidence            6666666 899999 5899989998875 5666677666543

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.65  E-value=6.9e-14  Score=152.63  Aligned_cols=249  Identities=10%  Similarity=0.006  Sum_probs=186.3

Q ss_pred             CCCeEEEEEcCCCeEEEEec------cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEE
Q 003271          575 HDKKAVLWCTESFTVKSTLE------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (835)
Q Consensus       575 ~Dg~I~VWd~~t~~~i~~l~------~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~f  648 (835)
                      .++.|.+||.++++....+.      .......++.+. +++++++...++.|.+||..+++. +..+. .......+++
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~-~~~i~-~~~~p~~i~~   91 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKE-VGRIT-GFTSPRYIHF   91 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCE-EEEEE-CCSSEEEEEE
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEE-EEEcC-CCCCCcEEEE
Confidence            37899999999998876542      122456778874 345555666679999999998774 45454 3467889999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------CceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEE
Q 003271          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKL  718 (835)
Q Consensus       649 sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l  718 (835)
                      ++++ .++++...++.|.+||+.+++....+..        ....+++  +++.++++..  ++.|.+||+.+++.+..+
T Consensus        92 ~~~g-~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i  168 (328)
T 3dsm_A           92 LSDE-KAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDEL  168 (328)
T ss_dssp             EETT-EEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEE
T ss_pred             eCCC-eEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEE
Confidence            8887 5666665799999999999988776652        3456677  5677777763  789999999999888877


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEe-C----------CeEEEEEcCCCCCcceEEEeecC-CCceEEEEEeCCCCEEEEEEc
Q 003271          719 QGHKNQVHSVCWNTSGEYLASVS-D----------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCVFHPTFPSLLVIGC  786 (835)
Q Consensus       719 ~~h~~~I~sl~fspdg~~Lasgs-D----------g~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs~  786 (835)
                      .. ......++++++|++++++. +          +.|.+||..++   +....+... ......++|+|++++|+++..
T Consensus       169 ~~-g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~---~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          169 TI-GIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETF---TVEKQFKFKLGDWPSEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             EC-SSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTT---EEEEEEECCTTCCCEEEEECTTSCEEEEESS
T ss_pred             Ec-CCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCC---eEEEEEecCCCCCceeEEEecCCCEEEEEcc
Confidence            64 33457889999999777766 4          68999999887   555455432 347899999999999988765


Q ss_pred             CCeEEEEEcCCCcEEE--e-ccCCCCeeEEEEeC-CCCEEEEE----ECCCcEEEeC
Q 003271          787 YETLELWNMTENKTLT--L-SAHDKLVSSLAAST-VNGMVASA----SHDKCVKIWK  835 (835)
Q Consensus       787 dg~I~IwDl~~~~~~~--l-~~h~~~V~~la~sp-dg~~LaSg----s~DG~V~IWd  835 (835)
                        .|++||..+++...  + ..+.....+++++| ++.++++.    ..++.|.+||
T Consensus       245 --~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d  299 (328)
T 3dsm_A          245 --DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYS  299 (328)
T ss_dssp             --SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEEC
T ss_pred             --EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEEC
Confidence              89999999887642  1 12246789999999 55566665    5688999986

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.64  E-value=4.3e-13  Score=157.32  Aligned_cols=263  Identities=11%  Similarity=0.062  Sum_probs=193.2

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC--CCCceeEEeecCCCC
Q 003271          565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE--NPDYSLRTFTGHSTT  642 (835)
Q Consensus       565 pdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~--t~~~~~~~~~~h~~~  642 (835)
                      +.+.++++...++.|.+||..+++.+.++... ..+..+.|+||++++++++.|+.|.+||+.  +.+. +..+.. ...
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~-v~~i~~-G~~  241 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT-VAEIKI-GSE  241 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE-EEEEEC-CSE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcE-eEEEec-CCC
Confidence            34456777778999999999999999888643 357799999999999999999999999995  5543 444443 334


Q ss_pred             eEEEEEc----CCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------------CceEEEEecCCCEEEEEEc-CCc
Q 003271          643 VMSLDFH----PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------------GATQMRFQPRLGRILAAAI-ENY  703 (835)
Q Consensus       643 V~sl~fs----p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------------~i~~l~fsp~~~~ll~~s~-dg~  703 (835)
                      ...++|+    |+|+++++++..++.|.++|..+.+.+..+..              .+..+.+++++..+++... +|.
T Consensus       242 P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~  321 (567)
T 1qks_A          242 ARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGK  321 (567)
T ss_dssp             EEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTE
T ss_pred             CceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCe
Confidence            6799999    69999998888899999999999988876652              2456777887776666554 589


Q ss_pred             EEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec-----CCCceEEEEE
Q 003271          704 ISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVF  774 (835)
Q Consensus       704 I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~-----~~~~V~sv~f  774 (835)
                      |.++|..+...  +..+ .......++.|+|+|++|+++.  ++.|.++|+.++   +.+..+..     |.+.... .+
T Consensus       322 v~~vd~~~~~~~~v~~i-~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~---kl~~~i~vgg~~Phpg~g~~-~~  396 (567)
T 1qks_A          322 ILLVDYTDLNNLKTTEI-SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGAN-FV  396 (567)
T ss_dssp             EEEEETTCSSEEEEEEE-ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEE-EE
T ss_pred             EEEEecCCCccceeeee-eccccccCceECCCCCEEEEEeCCCCeEEEEECCCC---cEEEEEeccCcCCCCcccee-eE
Confidence            99999987532  2223 2455678899999999988777  789999999987   44444433     2221222 26


Q ss_pred             eCCCCEEEEEE--cCCeEEEEEcCC-------CcEE-EeccCCCCeeEEEEeCCCCEEEEEEC-------CCcEEEeC
Q 003271          775 HPTFPSLLVIG--CYETLELWNMTE-------NKTL-TLSAHDKLVSSLAASTVNGMVASASH-------DKCVKIWK  835 (835)
Q Consensus       775 spdg~~L~sgs--~dg~I~IwDl~~-------~~~~-~l~~h~~~V~~la~spdg~~LaSgs~-------DG~V~IWd  835 (835)
                      +|++..+++.+  .++.|.+||..+       .+.+ .+......-..|.++|++++|.....       ..+|.|||
T Consensus       397 ~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d  474 (567)
T 1qks_A          397 HPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFD  474 (567)
T ss_dssp             ETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEE
T ss_pred             CCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEE
Confidence            88866566555  457999999987       5555 44433333355778999998887663       34788775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.64  E-value=1.4e-14  Score=159.84  Aligned_cols=235  Identities=10%  Similarity=0.056  Sum_probs=162.9

Q ss_pred             EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEE-------------------EEECCCCCEEEEE----
Q 003271          559 ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD-------------------VRFSPSLSRLATS----  615 (835)
Q Consensus       559 ~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~s-------------------v~fspdg~~Latg----  615 (835)
                      .++.|+|||++|+.++.++.|++||+.+++....+..+.....+                   +.|+|+++.++.+    
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~  163 (396)
T 3c5m_A           84 FGGFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYH  163 (396)
T ss_dssp             TTCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHH
T ss_pred             ccceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeecc
Confidence            34789999999999999999999999988876666545443333                   4567888776654    


Q ss_pred             -ECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcC-CCCcEEEEEeCC-----CcEEEEECCCCeeeeEeec----Cce
Q 003271          616 -SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-SKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKS----GAT  684 (835)
Q Consensus       616 -s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp-~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~~----~i~  684 (835)
                       ..+..|++||+.+++.  ..+..+...+..+.|+| ++..++++....     ..|++||+..++.......    .+.
T Consensus       164 ~~~~~~l~~~d~~~g~~--~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~  241 (396)
T 3c5m_A          164 TNPTCRLIKVDIETGEL--EVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT  241 (396)
T ss_dssp             TCCCEEEEEEETTTCCE--EEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE
T ss_pred             CCCcceEEEEECCCCcE--EeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc
Confidence             3567899999988663  33345677899999999 666555544322     4699999876654333221    256


Q ss_pred             EEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcC-CCCEEEEEe-----------------
Q 003271          685 QMRFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHKNQVHSVCWNT-SGEYLASVS-----------------  741 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs-----------------  741 (835)
                      .++|+|++..|++++.+     +.|++||+.+++....... . .+. +.|+| +|++|++++                 
T Consensus       242 ~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~  318 (396)
T 3c5m_A          242 HEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIEN  318 (396)
T ss_dssp             EEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C-SEE-EEEECSSSSEEEEEECCC----------CCCC
T ss_pred             ceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCC
Confidence            68999999988877654     3499999998865443321 1 233 89999 999888753                 


Q ss_pred             CCeEEEEEcCCCCCcceEEEeecCCC-----------ceEEEEEeCCCCEEEEEEcC-C--eEEEEEcCCCcEEE
Q 003271          742 DELVRVWSIGSGSKGECIHELSCTGN-----------KFHSCVFHPTFPSLLVIGCY-E--TLELWNMTENKTLT  802 (835)
Q Consensus       742 Dg~I~IwDl~t~~~~~~i~~l~~~~~-----------~V~sv~fspdg~~L~sgs~d-g--~I~IwDl~~~~~~~  802 (835)
                      +..|++||+.++..    ..+..+..           .+..++|+|+++.|++++.+ +  .|+++|+.++....
T Consensus       319 ~~~i~~~d~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~~~  389 (396)
T 3c5m_A          319 DPFLYVLNTKAKSA----QKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYKHL  389 (396)
T ss_dssp             CCEEEEEETTTTBC----CEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC--
T ss_pred             CCcEEEEecccCce----EEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccccc
Confidence            36899999987632    22333332           25667899999998888764 4  56666776666543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.63  E-value=1.1e-13  Score=147.68  Aligned_cols=236  Identities=9%  Similarity=0.073  Sum_probs=170.1

Q ss_pred             EEEEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 003271          589 VKSTLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (835)
Q Consensus       589 ~i~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i  667 (835)
                      .+..+..+.....+++|+|+++ +++++..++.|.+||..++   ...+..+...+.++++++++. ++++...++.|.+
T Consensus        19 ~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~---~~~~~~~~~~~~~l~~~~dg~-l~v~~~~~~~i~~   94 (296)
T 3e5z_A           19 EARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ---LSPEMHPSHHQNGHCLNKQGH-LIACSHGLRRLER   94 (296)
T ss_dssp             CCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC---EEEEESSCSSEEEEEECTTCC-EEEEETTTTEEEE
T ss_pred             cEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC---eEEEECCCCCcceeeECCCCc-EEEEecCCCeEEE
Confidence            3445555667788999999998 7788888999999999875   455666778899999999986 6666666789999


Q ss_pred             EECCCCeeeeEee-------cCceEEEEecCCCEEEEE----Ec-------------CCcEEEEECCCCeEEEEEcCCCC
Q 003271          668 WSINNGSCAGVFK-------SGATQMRFQPRLGRILAA----AI-------------ENYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       668 wDl~s~~~~~~~~-------~~i~~l~fsp~~~~ll~~----s~-------------dg~I~IwDl~t~~~i~~l~~h~~  723 (835)
                      ||..+++......       ..+..++++++|..+++.    +.             .+.|..+|.. ++.. .+..+..
T Consensus        95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~~~~  172 (296)
T 3e5z_A           95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIRDRV  172 (296)
T ss_dssp             ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEECCCS
T ss_pred             EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-EeecCCC
Confidence            9998887544322       125679999998877763    21             3467777765 4433 3445667


Q ss_pred             CeEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          724 QVHSVCWNTSGEYLASVS-DELVRVWSIG-SGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~-t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      ....++|+|++++|++.+ ++.|++||+. ++........+..+...+..++++++|..++ ++ ++.|.+||.......
T Consensus       173 ~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v-~~-~~~v~~~~~~g~~~~  250 (296)
T 3e5z_A          173 KPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWA-SA-GDGVHVLTPDGDELG  250 (296)
T ss_dssp             SEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEE-EE-TTEEEEECTTSCEEE
T ss_pred             CCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEE-Ec-CCeEEEECCCCCEEE
Confidence            789999999999985555 7899999997 3311011222233455677899999998544 44 889999998743333


Q ss_pred             EeccCCCCeeEEEE-eCCCCEEEEEECCCcEEE
Q 003271          802 TLSAHDKLVSSLAA-STVNGMVASASHDKCVKI  833 (835)
Q Consensus       802 ~l~~h~~~V~~la~-spdg~~LaSgs~DG~V~I  833 (835)
                      .+..+.. +.+++| .++++.|++++.++.+++
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~~~l~~~  282 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVSTEFWSI  282 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEETTEEEEE
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcCCeEEEE
Confidence            5666666 999999 588888888888765544

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=1.8e-12  Score=137.20  Aligned_cols=273  Identities=8%  Similarity=-0.016  Sum_probs=192.8

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +......+.+++++++|+++++...++.|.+||.. ++... .+..+...+.++++.+++.++++...++.|.+||.. +
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g   92 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-G   92 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-S
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-C
Confidence            34456789999999999988877778999999988 55543 233344679999999999888777668899999988 5


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-ee---cCceEEEEecCCCEEEEEEcCCcEE
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK---SGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-~~---~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      .............+.++++.+++. ++++...++.|..||.. ++.... +.   .....+++.+++..+++...++.|.
T Consensus        93 ~~~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~  170 (300)
T 2qc5_A           93 GFTEYPLPQPDSGPYGITEGLNGD-IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIG  170 (300)
T ss_dssp             CEEEEECSSTTCCEEEEEECSTTC-EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEE
T ss_pred             CeEEecCCCCCCCCccceECCCCC-EEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEE
Confidence            432222232446789999999875 66666667899999988 554422 22   3367889999988554444468899


Q ss_pred             EEECCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE
Q 003271          706 ILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       706 IwDl~t~~~i~-~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s  783 (835)
                      +||. +++... ....+...+.+++++++|.++++.. .+.|.+||. ++.  .....+......+.++++++++..+++
T Consensus       171 ~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~--~~~~~~~~~~~~~~~i~~d~~g~l~v~  246 (300)
T 2qc5_A          171 RITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGE--ISEYDIPTPNARPHAITAGKNSEIWFT  246 (300)
T ss_dssp             EECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCC--EEEEECSSTTCCEEEEEECSTTCEEEE
T ss_pred             EECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCc--EEEEECCCCCCCceEEEECCCCCEEEe
Confidence            9998 554433 2223456789999999998777766 678999998 331  122223334567899999999985444


Q ss_pred             EEcCCeEEEEEcCCCcEEE--eccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          784 IGCYETLELWNMTENKTLT--LSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       784 gs~dg~I~IwDl~~~~~~~--l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ...++.|.+||. ++....  +......+.+++++++|.++++.. . .|..+
T Consensus       247 ~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          247 EWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             ETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             ccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence            445689999998 455443  333456789999999998766654 4 55554

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.63  E-value=8.8e-14  Score=154.36  Aligned_cols=271  Identities=10%  Similarity=0.064  Sum_probs=194.2

Q ss_pred             EEEeCCCCEEEEEeC-----CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEe
Q 003271          561 CHFSPDGKLLATGGH-----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWD  625 (835)
Q Consensus       561 l~fSpdg~~Lasgs~-----Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~IWD  625 (835)
                      ....|+++.+++...     ++.|.++|..+++.+.++.....+ . ++++||+++|++++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            445689988888765     679999999999999998765555 4 99999999988876          367899999


Q ss_pred             cCCCCceeEEee-cC------CCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEE
Q 003271          626 TENPDYSLRTFT-GH------STTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILA  697 (835)
Q Consensus       626 l~t~~~~~~~~~-~h------~~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~  697 (835)
                      ..+.+. +..+. +.      ......+.|+|+|++++++.. .++.|.++|+.+++.+..+..+-....+......+++
T Consensus       116 ~~t~~v-~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~  194 (386)
T 3sjl_D          116 PVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFM  194 (386)
T ss_dssp             TTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEE
T ss_pred             CCCCeE-EEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEE
Confidence            998775 44332 21      124667999999998887764 3789999999999999888755433344444567788


Q ss_pred             EEcCCcEEEEECCC-CeEEEEEcCC----CCCeE-EEEEc-CCCCEEEEEeCCeEEEEEcCCCCCcceEEEee---c---
Q 003271          698 AAIENYISILDVET-QVCRLKLQGH----KNQVH-SVCWN-TSGEYLASVSDELVRVWSIGSGSKGECIHELS---C---  764 (835)
Q Consensus       698 ~s~dg~I~IwDl~t-~~~i~~l~~h----~~~I~-sl~fs-pdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~---~---  764 (835)
                      .+.||.+.++++.+ ++.......+    ...+. ...|. ++|++++...+|.|+++|+.+... ..+..+.   .   
T Consensus       195 ~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~-~v~~~~~~~~~~~~  273 (386)
T 3sjl_D          195 HCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTEAER  273 (386)
T ss_dssp             EETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCHHHH
T ss_pred             ECCCCCEEEEECCCCCeEEEeecceeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcc-eeecceeccccccc
Confidence            89999999999986 5543322111    12222 23554 688777766689999999976531 1222221   0   


Q ss_pred             ----CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CC
Q 003271          765 ----TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HD  828 (835)
Q Consensus       765 ----~~~~V~sv~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~D  828 (835)
                          ....+..+++++++..+++...          .+.|.++|+.+++++....-...++.|+|++|++ +|+++. .+
T Consensus       274 ~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~  353 (386)
T 3sjl_D          274 ADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGD  353 (386)
T ss_dssp             HTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTT
T ss_pred             cccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCC
Confidence                1123335777999999998764          2479999999999985544455789999999997 666654 58


Q ss_pred             CcEEEeC
Q 003271          829 KCVKIWK  835 (835)
Q Consensus       829 G~V~IWd  835 (835)
                      +.|.|+|
T Consensus       354 ~~VsViD  360 (386)
T 3sjl_D          354 KTLYIHD  360 (386)
T ss_dssp             TEEEEEE
T ss_pred             CeEEEEE
Confidence            8999886

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.62  E-value=1.3e-12  Score=145.60  Aligned_cols=266  Identities=10%  Similarity=0.009  Sum_probs=185.2

Q ss_pred             EeCCCCEEEEEeC--CC---eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEecC
Q 003271          563 FSPDGKLLATGGH--DK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTE  627 (835)
Q Consensus       563 fSpdg~~Lasgs~--Dg---~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~IWDl~  627 (835)
                      ..++++++++...  ..   .|.+||..+++.+.++.....+  .++|+||+++|+++.          .++.|.+||..
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            3467777766653  22   8899999999999888755444  999999999999886          36789999998


Q ss_pred             CCCceeEEeecC-------CCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeE-eecCceEEEEecCC-CEEEE
Q 003271          628 NPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGV-FKSGATQMRFQPRL-GRILA  697 (835)
Q Consensus       628 t~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~-~~~~i~~l~fsp~~-~~ll~  697 (835)
                      +.+. +..+...       ......+.|+|+|++++++... ++.|.++| .+++.+.. +..+.. +.+.+.+ ..+++
T Consensus       106 t~~~-~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~-~~~~~~~~~~~~~  182 (373)
T 2mad_H          106 TFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC-YHIHPGAPSTFYL  182 (373)
T ss_pred             CCcE-EEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce-EEEEeCCCceEEE
Confidence            7664 3333211       1235589999999988776644 68899999 99998877 665433 4555655 45566


Q ss_pred             EEcCCcEEEEECCCCeEEEEEc-----CCCCCe-EEEEEcCCCCEEEE-EeCCeEEEEEcCCCCCcceEEEeec------
Q 003271          698 AAIENYISILDVETQVCRLKLQ-----GHKNQV-HSVCWNTSGEYLAS-VSDELVRVWSIGSGSKGECIHELSC------  764 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~-----~h~~~I-~sl~fspdg~~Las-gsDg~I~IwDl~t~~~~~~i~~l~~------  764 (835)
                      .+.||.+.++|. +++.+....     ....++ ....+.+++..++. ..++.|.+.|+..... ..+..+..      
T Consensus       183 ~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~-~v~~~~~~~~~~~~  260 (373)
T 2mad_H          183 LCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAPIDALSGGRK  260 (373)
T ss_pred             EcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcc-eEeeeeeecCCccc
Confidence            777899999999 776663321     111221 23455666544443 3478999999975421 22222211      


Q ss_pred             ----CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CC
Q 003271          765 ----TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HD  828 (835)
Q Consensus       765 ----~~~~V~sv~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~D  828 (835)
                          .......+.++|+++.++++..          .+.|.++|+.+++.+..........+++|+|||+ +++++. .+
T Consensus       261 ~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~  340 (373)
T 2mad_H          261 ADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGPDLYALSAGT  340 (373)
T ss_pred             ccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEECCCCcCeEEECCCCCeEEEEEcCCC
Confidence                1122445789999998888764          3589999999999875445555789999999999 777777 58


Q ss_pred             CcEEEeC
Q 003271          829 KCVKIWK  835 (835)
Q Consensus       829 G~V~IWd  835 (835)
                      +.|.|||
T Consensus       341 ~~V~ViD  347 (373)
T 2mad_H          341 EVLHIYD  347 (373)
T ss_pred             CeEEEEE
Confidence            9999986

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.61  E-value=1.5e-13  Score=143.86  Aligned_cols=236  Identities=8%  Similarity=-0.040  Sum_probs=168.1

Q ss_pred             CEEEEEEeCCCCEEE-EEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          557 KVESCHFSPDGKLLA-TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       557 ~V~sl~fSpdg~~La-sgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      ...+++++++|++++ +...++.|.+||..+.........+...+.+++++++++++++.. ++.|.+||......  ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~--~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQ--TV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCSCC--EE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCceE--ee
Confidence            578999999999777 446789999999866554332233445788999999998666555 88999999876543  22


Q ss_pred             ee-cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCC
Q 003271          636 FT-GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVET  711 (835)
Q Consensus       636 ~~-~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t  711 (835)
                      +. .....+.++++++++. ++++...++.|.+|+..+........   .....+++++++..+++...++.|.+||...
T Consensus       102 ~~~~~~~~p~~i~~~~~g~-l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~  180 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAES  180 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCC-EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTT
T ss_pred             eecCCcCCCcceEECCCCC-EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCC
Confidence            22 2335789999999876 67677778899999876554332221   2467899999887555555578999999987


Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003271          712 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL  790 (835)
Q Consensus       712 ~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I  790 (835)
                      .........+...+.+++++++|.++++.. ++.|.+||....   ........+...+..+++++++..+++...++.|
T Consensus       181 ~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~---~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v  257 (270)
T 1rwi_B          181 NNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST---TSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV  257 (270)
T ss_dssp             CCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS---CCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEE
T ss_pred             CceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC---cceeeccCCCCCceeEEECCCCCEEEEECCCCEE
Confidence            765544333446789999999997777766 789999998664   2222222233578999999999877777778899


Q ss_pred             EEEEcCCCc
Q 003271          791 ELWNMTENK  799 (835)
Q Consensus       791 ~IwDl~~~~  799 (835)
                      ++|++...+
T Consensus       258 ~~~~~~~~~  266 (270)
T 1rwi_B          258 VKLTSLEHH  266 (270)
T ss_dssp             EEECCCGGG
T ss_pred             EEEcCCCcc
Confidence            999987654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.60  E-value=2.4e-14  Score=172.31  Aligned_cols=245  Identities=10%  Similarity=0.011  Sum_probs=168.1

Q ss_pred             CCCCCEEEEEEeCCCCEEEE-----EeCCCeEEEEEcCCCeEEEEeccCCCCe--EEEEECCCCCEEEEEECCCe-----
Q 003271          553 ASTSKVESCHFSPDGKLLAT-----GGHDKKAVLWCTESFTVKSTLEEHTQWI--TDVRFSPSLSRLATSSADRT-----  620 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Las-----gs~Dg~I~VWd~~t~~~i~~l~~h~~~V--~sv~fspdg~~Latgs~Dg~-----  620 (835)
                      +|...+.+++|||||++||.     |+.+..|++||+.+++.+.  ..+...+  ..++|+|||+.|+.++.|..     
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~--~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~  195 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSK--VDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKV  195 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCS--SCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCG
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcC--CcccCcccccceEEecCCCEEEEEEecCCCCCcc
Confidence            45667999999999999984     3345689999999987641  1122223  68999999999999998876     


Q ss_pred             --------EEEEecCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-C--cEEEEECCCCeeeeEee--cCce
Q 003271          621 --------VRVWDTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-S--EIRYWSINNGSCAGVFK--SGAT  684 (835)
Q Consensus       621 --------I~IWDl~t~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-g--~I~iwDl~s~~~~~~~~--~~i~  684 (835)
                              |++|++.++..   .+.....|...+.++.|+|+|+.++++...+ +  .|++||..+++......  ....
T Consensus       196 ~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~  275 (695)
T 2bkl_A          196 DERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY  275 (695)
T ss_dssp             GGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE
T ss_pred             ccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE
Confidence                    99999987653   2222334556789999999998877666543 2  67777766554433332  2344


Q ss_pred             EEEEecCCCEEEEEEc----CCcEEEEECCCCeE---EEEEcCC-CCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC
Q 003271          685 QMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGH-KNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK  755 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~----dg~I~IwDl~t~~~---i~~l~~h-~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~  755 (835)
                      ...+ ++++ +++.+.    ++.|.+||+.++..   ...+..+ ...+..++|+ ++.++++.. |+..+||.+...  
T Consensus       276 ~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~--  350 (695)
T 2bkl_A          276 EVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLK--  350 (695)
T ss_dssp             EEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETT--
T ss_pred             EEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCC--
Confidence            4445 6666 666554    47899999987642   3333333 4567888888 666777766 887777766521  


Q ss_pred             cceEEEeecC-CCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCcEEEec
Q 003271          756 GECIHELSCT-GNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS  804 (835)
Q Consensus       756 ~~~i~~l~~~-~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l~  804 (835)
                      ...+..+..+ ...+..+.++|++..|++...+    +.|++||+.+++...+.
T Consensus       351 g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~~~l~  404 (695)
T 2bkl_A          351 GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKSELWA  404 (695)
T ss_dssp             CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCEEEEE
T ss_pred             CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEEe
Confidence            1345555544 5567778899999877755443    58999999988765443

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.60  E-value=3.1e-13  Score=147.50  Aligned_cols=252  Identities=8%  Similarity=-0.017  Sum_probs=179.4

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      ....+++. +++++++...++.|.+||..+++.+.++. .......++++++++.+++...++.|.+||..+.+. ...+
T Consensus        45 ~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~-~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~-~~~i  121 (328)
T 3dsm_A           45 VAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRIT-GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEI-TGYI  121 (328)
T ss_dssp             CEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEE-CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEE-EEEE
T ss_pred             cceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcC-CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeE-EEEE
Confidence            45677775 34556666668999999999999998885 346788999988885444444899999999998764 3333


Q ss_pred             ecCC-----CCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcC-------
Q 003271          637 TGHS-----TTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIE-------  701 (835)
Q Consensus       637 ~~h~-----~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~d-------  701 (835)
                      ....     .....+++  ++..++++.. .++.|.+||+.+++.+..+..  ....++++++++.++++..+       
T Consensus       122 ~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~  199 (328)
T 3dsm_A          122 ECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYG  199 (328)
T ss_dssp             ECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSC
T ss_pred             EcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccc
Confidence            3222     14566777  3455666654 488999999999998877763  35678899988765555444       


Q ss_pred             ---CcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          702 ---NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       702 ---g~I~IwDl~t~~~i~~l~~h-~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                         +.|.+||..+++....+... ......++|+|++++|+++.. .|.+||..++.... ...+.........++++|+
T Consensus       200 ~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~-~~~~~~~~~~p~gi~vdp~  277 (328)
T 3dsm_A          200 YEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPV-RPFLEFRDTKYYGLTVNPN  277 (328)
T ss_dssp             BCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCS-SCSBCCCSSCEEEEEECTT
T ss_pred             cCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEEEcc-EEEEEECCCCceee-eeeecCCCCceEEEEEcCC
Confidence               78999999999887766532 346899999999998887655 89999998764211 1111112467889999996


Q ss_pred             CCEEEEEE-----cCCeEEEEEcCCCcEEEeccCCCCeeEEEEe
Q 003271          778 FPSLLVIG-----CYETLELWNMTENKTLTLSAHDKLVSSLAAS  816 (835)
Q Consensus       778 g~~L~sgs-----~dg~I~IwDl~~~~~~~l~~h~~~V~~la~s  816 (835)
                      +..|+++.     .++.|.+||.. ++.+....-......++|-
T Consensus       278 ~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~~G~~P~~~~~~  320 (328)
T 3dsm_A          278 NGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFYVGIIPGAFCWK  320 (328)
T ss_dssp             TCCEEEEECTTSSSEEEEEEECTT-CCEEEEEEEEESEEEEEEE
T ss_pred             CCeEEEEcccccccCCEEEEECCC-CCEEEEEEeccCcceEEEe
Confidence            65566665     56799999998 7766433334455666653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.57  E-value=5.6e-13  Score=160.79  Aligned_cols=266  Identities=8%  Similarity=-0.018  Sum_probs=180.9

Q ss_pred             CCCCEEEEEeCCC-----eEEEEEcCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEEECCC-----eEEEEecCC
Q 003271          565 PDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTEN  628 (835)
Q Consensus       565 pdg~~Lasgs~Dg-----~I~VWd~~t~~~i~~l------~~h~~~V~sv~fspdg~~Latgs~Dg-----~I~IWDl~t  628 (835)
                      |||++++....++     .|++.+...++....+      .+|...+..++|+|||++|+.++.++     .|++||+.+
T Consensus        81 ~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~t  160 (710)
T 2xdw_A           81 KKGKRYFYFYNTGLQNQRVLYVQDSLEGEARVFLDPNILSDDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDG  160 (710)
T ss_dssp             EETTEEEEEEECSSCSSCEEEEESSTTSCCEEEECGGGGCTTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTT
T ss_pred             EECCEEEEEEEcCCceEEEEEEEcCCCCCcEEEECHHHhccCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCC
Confidence            7888877654332     3455554444433222      23445688999999999998776543     899999998


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc----------------EEEEECCCCeee--eEeec-----CceE
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE----------------IRYWSINNGSCA--GVFKS-----GATQ  685 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~----------------I~iwDl~s~~~~--~~~~~-----~i~~  685 (835)
                      ++.....+..  ..+.+++|+||++.++++.. ++.                |++|++.++...  ..+..     ....
T Consensus       161 g~~~~~~~~~--~~~~~~~wspDg~~l~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~  237 (710)
T 2xdw_A          161 AKELPDVLER--VKFSCMAWTHDGKGMFYNAY-PQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGG  237 (710)
T ss_dssp             TEEEEEEEEE--ECSCCEEECTTSSEEEEEEC-CCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEE
T ss_pred             CCCCcccccC--cccceEEEEeCCCEEEEEEE-CCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEE
Confidence            7643222222  23678999999987776554 433                999999887532  22221     2568


Q ss_pred             EEEecCCCEEEEEEc-----CCcEEEEECCC------Ce-EEEEEcCCCCCeEEEEEcCCCCEEEEEe--C---CeEEEE
Q 003271          686 MRFQPRLGRILAAAI-----ENYISILDVET------QV-CRLKLQGHKNQVHSVCWNTSGEYLASVS--D---ELVRVW  748 (835)
Q Consensus       686 l~fsp~~~~ll~~s~-----dg~I~IwDl~t------~~-~i~~l~~h~~~I~sl~fspdg~~Lasgs--D---g~I~Iw  748 (835)
                      +.|+|++++|++++.     +..|++||+.+      +. ....+..+...+.. .|+++|..|+..+  +   ..|.+|
T Consensus       238 ~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~  316 (710)
T 2xdw_A          238 AELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINI  316 (710)
T ss_dssp             EEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEE
T ss_pred             EEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEE
Confidence            899999999998876     56899999986      42 34555556666655 4888998877666  2   269999


Q ss_pred             EcCCCCCcceEEEeecCCC--ceEEEEEeCCCCEEEEEEcCC--eEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEE
Q 003271          749 SIGSGSKGECIHELSCTGN--KFHSCVFHPTFPSLLVIGCYE--TLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVA  823 (835)
Q Consensus       749 Dl~t~~~~~~i~~l~~~~~--~V~sv~fspdg~~L~sgs~dg--~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~La  823 (835)
                      |+.++.. .....+..+..  .+..++|++++..+++...++  .|++||+.+++.+ .+..+.+.|..+++++++..|+
T Consensus       317 d~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~~~l~~~~~~v~~~~~s~d~~~l~  395 (710)
T 2xdw_A          317 DFTDPEE-SKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALLKIFPLEVGSVVGYSGQKKDTEIF  395 (710)
T ss_dssp             ETTSCCG-GGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEEEEECCCSSEEEEEECCTTCSEEE
T ss_pred             eCCCCCc-ccceeccCCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEEEecCCCCceEEEEecCCCCCEEE
Confidence            9987632 12334444433  678899997777777787787  5777888677654 6666778899999999987555


Q ss_pred             EE-E---CCCcEEEeC
Q 003271          824 SA-S---HDKCVKIWK  835 (835)
Q Consensus       824 Sg-s---~DG~V~IWd  835 (835)
                      .. +   ..+.|++||
T Consensus       396 ~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          396 YQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEECSSCCCEEEEEE
T ss_pred             EEEeCCCCCCEEEEEE
Confidence            33 3   246777775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.57  E-value=1.2e-12  Score=139.62  Aligned_cols=239  Identities=10%  Similarity=0.045  Sum_probs=177.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC-CCCe
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-STTV  643 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-~~~V  643 (835)
                      .+++|++++.|+.|.+||.++++.+.++..+. ..+.++.++|+|++|+  +.++.|..||. +++. +..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~-~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRE-LWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCE-EEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCE-EEEEcCCCCccc
Confidence            46789999999999999999999999998776 5789999999999888  45788999999 6664 5555544 3578


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---------CceEEEEecCCCEEEEEEcCCcEEEEECCCCeE
Q 003271          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---------GATQMRFQPRLGRILAAAIENYISILDVETQVC  714 (835)
Q Consensus       644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~  714 (835)
                      .++.+.++|+.+++.++.++.|..+|. +++.+..+..         ....+++.++++++++...++.|.+||.+ ++.
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~  157 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL  157 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence            899999998855543433778888886 6777666542         13456788999999888889999999998 999


Q ss_pred             EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC------CceEEEEEeCCCCEEEEEEcC
Q 003271          715 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG------NKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       715 i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~------~~V~sv~fspdg~~L~sgs~d  787 (835)
                      +..+... ..+.++.+.++|.+++++. ++.|..||..++   +.+.++....      ..+..+...++|..+++....
T Consensus       158 ~w~~~~~-~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG---~~~w~~~~~~~~~~~l~~~~~~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          158 LNSVKLS-GTPFSSAFLDNGDCLVACGDAHCFVQLNLESN---RIVRRVNANDIEGVQLFFVAQLFPLQNGGLYICNWQG  233 (276)
T ss_dssp             EEEEECS-SCCCEEEECTTSCEEEECBTTSEEEEECTTTC---CEEEEEEGGGSBSCCCSEEEEEEECTTSCEEEEEECT
T ss_pred             EEEEECC-CCccceeEcCCCCEEEEeCCCCeEEEEeCcCC---cEEEEecCCCCCCccccccccceEcCCCCEEEEeccC
Confidence            9888754 4566788889999999888 668999999887   5666665322      237888889999877665421


Q ss_pred             --------CeEEEEEc-CCCcEE-EeccC--CCCeeEEE
Q 003271          788 --------ETLELWNM-TENKTL-TLSAH--DKLVSSLA  814 (835)
Q Consensus       788 --------g~I~IwDl-~~~~~~-~l~~h--~~~V~~la  814 (835)
                              +..+++++ .+++++ .+..+  -+.|.++|
T Consensus       234 ~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          234 HDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             TCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             ccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence                    23456666 456655 33322  24455544

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.57  E-value=3.7e-13  Score=140.87  Aligned_cols=231  Identities=7%  Similarity=-0.081  Sum_probs=164.2

Q ss_pred             CeEEEEECCCCCEEE-EEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271          599 WITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (835)
Q Consensus       599 ~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~  677 (835)
                      ...++++++++++++ +...++.|.+||..+... ......+...+.++++++++. ++++.. ++.|.+||........
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~p~~i~~~~~g~-l~v~~~-~~~i~~~d~~~~~~~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGT-TVLPFNGLYQPQGLAVDGAGT-VYVTDF-NNRVVTLAAGSNNQTV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC------EECCCCSCCSCCCEEECTTCC-EEEEET-TTEEEEECTTCSCCEE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCccc-ceEeeCCcCCcceeEECCCCC-EEEEcC-CCEEEEEeCCCceEee
Confidence            678999999998777 446788999999765442 111123335688999999877 665555 8899999987654432


Q ss_pred             Ee-e--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCC
Q 003271          678 VF-K--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSG  753 (835)
Q Consensus       678 ~~-~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~  753 (835)
                      .. .  .....+++++++..+++...++.|.+||..+.............+.+++++++|+++++.. ++.|.+||....
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~  181 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN  181 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTC
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCC
Confidence            21 1  3477899999887555555678999998766544333333345678899999999777766 789999998765


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec-cCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-~h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                         ............+..+++++++..+++...++.|.+||..+....... .+...+.+++++++|+++++...++.|+
T Consensus       182 ---~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~  258 (270)
T 1rwi_B          182 ---NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  258 (270)
T ss_dssp             ---CEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             ---ceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEE
Confidence               222222233367899999999965555556779999999776655433 3346789999999999888888999999


Q ss_pred             EeC
Q 003271          833 IWK  835 (835)
Q Consensus       833 IWd  835 (835)
                      +|+
T Consensus       259 ~~~  261 (270)
T 1rwi_B          259 KLT  261 (270)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            985

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=3e-11  Score=127.55  Aligned_cols=237  Identities=10%  Similarity=0.026  Sum_probs=166.5

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE-EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~-i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~  631 (835)
                      .+...+.+++++++|.++++...++.|.+||.. ++. ...+......+.++++.+++.++++...++.|.+||. ++..
T Consensus        54 ~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~  131 (299)
T 2z2n_A           54 TPDAKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKI  131 (299)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCE
T ss_pred             cccCceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCE
Confidence            345679999999999988887778899999986 333 2223334567899999999988888777889999998 4443


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-ee---cCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-FK---SGATQMRFQPRLGRILAAAIENYISIL  707 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-~~---~~i~~l~fsp~~~~ll~~s~dg~I~Iw  707 (835)
                      .......+...+.++++++++. ++++...++.|.+||. +++.... ..   ..+..+++++++..+++...++.|.+|
T Consensus       132 ~~~~~~~~~~~~~~i~~~~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~  209 (299)
T 2z2n_A          132 REYELPNKGSYPSFITLGSDNA-LWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRI  209 (299)
T ss_dssp             EEEECSSTTCCEEEEEECTTSC-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEecCCCCCCCCceEEEcCCCC-EEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEE
Confidence            2222333456789999999875 6666666789999999 6655432 22   236688999987755554457899999


Q ss_pred             ECCCCeEEEE-EcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          708 DVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       708 Dl~t~~~i~~-l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      |. +++.... +..+...+.+++++++|.++++.. ++.|.+||. ++.  .....+..+...+.++++ +++. |++++
T Consensus       210 ~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~--~~~~~~~~~~~~~~~i~~-~~g~-l~v~~  283 (299)
T 2z2n_A          210 TT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI--IEEYPIQIKSAEPHGICF-DGET-IWFAM  283 (299)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE--EEEEECSSSSCCEEEEEE-CSSC-EEEEE
T ss_pred             CC-CCcEEEEECCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCc--eEEEeCCCCCCccceEEe-cCCC-EEEEe
Confidence            99 6654332 333557799999999999777765 789999998 331  111223344567899999 8777 45555


Q ss_pred             cCCeEEEEEcCCCc
Q 003271          786 CYETLELWNMTENK  799 (835)
Q Consensus       786 ~dg~I~IwDl~~~~  799 (835)
                      ..+.|..++..+++
T Consensus       284 ~~~~l~~~~~~~~~  297 (299)
T 2z2n_A          284 ECDKIGKLTLIKDN  297 (299)
T ss_dssp             TTTEEEEEEEC---
T ss_pred             cCCcEEEEEcCccc
Confidence            56788888876654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.54  E-value=2.7e-11  Score=134.86  Aligned_cols=242  Identities=12%  Similarity=0.060  Sum_probs=172.6

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECCCCCE
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLSR  611 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fspdg~~  611 (835)
                      ..++....+  .++|+|||++|+++.          .++.|.+||..+++.+..+...       ......++|+|||++
T Consensus        61 ~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~  138 (373)
T 2mad_H           61 GHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNAD  138 (373)
T ss_pred             EEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCE
Confidence            344443344  899999999998886          3678999999998888776432       123458999999999


Q ss_pred             EEEEEC--CCeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cC-
Q 003271          612 LATSSA--DRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SG-  682 (835)
Q Consensus       612 Latgs~--Dg~I~IWDl~t~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~-  682 (835)
                      |+++..  ++.|.++| .+++. +.. +. ..   .|+.+.|++...+++.+.||.+.+||. +++......     .. 
T Consensus       139 l~v~n~~~~~~v~viD-~t~~~-~~~~i~-~~---~~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~  211 (373)
T 2mad_H          139 LLFFQFAAGPAVGLVV-QGGSS-DDQLLS-SP---TCYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             EEEEecCCCCeEEEEE-CCCCE-EeEEcC-CC---ceEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCC
Confidence            999874  47899999 87764 444 32 11   235566777777778888999999999 877663322     11 


Q ss_pred             ---ceEEEEecCCCEEEEEEcCCcEEEEECCCCe--EEEEEcC----------CCCCeEEEEEcCCCCEEEEEe------
Q 003271          683 ---ATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQG----------HKNQVHSVCWNTSGEYLASVS------  741 (835)
Q Consensus       683 ---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i~~l~~----------h~~~I~sl~fspdg~~Lasgs------  741 (835)
                         .....+.++++.++..+.++.+.++|+....  .+..+.-          .......+.+++++..+++..      
T Consensus       212 ~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~  291 (373)
T 2mad_H          212 QNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAW  291 (373)
T ss_pred             cceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcc
Confidence               1224566777776666688999999997552  2222211          122344578899988877754      


Q ss_pred             -----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEEcCCCcEEEe
Q 003271          742 -----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL  803 (835)
Q Consensus       742 -----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l  803 (835)
                           ++.|.++|+.+.   +.+.++.. ......++|+||++ .++++. .++.|.+||+.+++.+..
T Consensus       292 ~~~~~~~~V~VID~~t~---~vv~~i~~-g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          292 KLHAAAKEVTSVTGLVG---QTSSQISL-GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             cccCCCCeEEEEECCCC---EEEEEEEC-CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence                 247999999887   66666653 44689999999999 677776 488999999999998854

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.54  E-value=5.7e-12  Score=134.73  Aligned_cols=237  Identities=10%  Similarity=0.098  Sum_probs=168.1

Q ss_pred             cCCCCCEEEEEEeCCCCEEEE-------EeCCCeEEEEEcCCCeEEEEec----cCCCCeEEEEECCC-CCEEEEEECCC
Q 003271          552 PASTSKVESCHFSPDGKLLAT-------GGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPS-LSRLATSSADR  619 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Las-------gs~Dg~I~VWd~~t~~~i~~l~----~h~~~V~sv~fspd-g~~Latgs~Dg  619 (835)
                      ...-....+++|+++|.++++       +..++.|.+||..+++......    ++...+.+++++++ ++++++ +.++
T Consensus        14 ~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~-~~~~   92 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVA-DMRL   92 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEE-ETTT
T ss_pred             hccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEE-ECCC
Confidence            344456789999999988887       5678999999988877653322    24567899999999 655554 4455


Q ss_pred             eEEEEecCCCCceeEEe-ec-----CCCCeEEEEEcCCCCcEEEEEeCC---------------CcEEEEECCCCeeeeE
Q 003271          620 TVRVWDTENPDYSLRTF-TG-----HSTTVMSLDFHPSKEDLLCSCDNN---------------SEIRYWSINNGSCAGV  678 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~-~~-----h~~~V~sl~fsp~g~~ll~sgs~D---------------g~I~iwDl~s~~~~~~  678 (835)
                      .|.+||.. ++.  ..+ ..     ....+.++++++++. ++++...+               +.|..||.. ++....
T Consensus        93 ~l~~~d~~-g~~--~~~~~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~  167 (314)
T 1pjx_A           93 GLLVVQTD-GTF--EEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQV  167 (314)
T ss_dssp             EEEEEETT-SCE--EECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEE
T ss_pred             CEEEEeCC-CCE--EEEEeccCCCccccCCcCEEECCCCC-EEEEecCcccccccccccccCCCCeEEEECCC-CCEEEe
Confidence            79999988 543  222 11     124588999999986 55555444               578888876 554333


Q ss_pred             ee--cCceEEEEe----cCCCEEEEEE-cCCcEEEEECC-CCe-----EEEEEcCCC-CCeEEEEEcCCCCEEEEEe-CC
Q 003271          679 FK--SGATQMRFQ----PRLGRILAAA-IENYISILDVE-TQV-----CRLKLQGHK-NQVHSVCWNTSGEYLASVS-DE  743 (835)
Q Consensus       679 ~~--~~i~~l~fs----p~~~~ll~~s-~dg~I~IwDl~-t~~-----~i~~l~~h~-~~I~sl~fspdg~~Lasgs-Dg  743 (835)
                      ..  .....++++    ++++.++++. .++.|.+||+. ++.     ....+..+. ..+..++++++|.++++.. ++
T Consensus       168 ~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~  247 (314)
T 1pjx_A          168 DTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             EEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             ccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCC
Confidence            22  346778999    9987777665 46899999986 443     223333343 5688999999999888876 88


Q ss_pred             eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCC
Q 003271          744 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTE  797 (835)
Q Consensus       744 ~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~  797 (835)
                      .|.+||..++   ..+..+..+...+.+++|++++..|++++. ++.|..|++..
T Consensus       248 ~i~~~d~~~g---~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          248 HIEVFGPDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEECTTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EEEEEcCCCC---cEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            9999998765   344455555678999999999997766654 57899999864

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.52  E-value=4.1e-12  Score=140.97  Aligned_cols=260  Identities=12%  Similarity=0.131  Sum_probs=178.8

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccCC-------CCeEEEEECCCCC
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHT-------QWITDVRFSPSLS  610 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h~-------~~V~sv~fspdg~  610 (835)
                      +..+..-..+ . ++++|||++|+++.          .++.|.+||..+++.+.++.-..       .....++|+|||+
T Consensus        72 ~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk  149 (386)
T 3sjl_D           72 IGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  149 (386)
T ss_dssp             EEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCC
Confidence            3444444444 4 99999999887765          36789999999999998875321       2456799999999


Q ss_pred             EEEEEEC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-CeeeeEee-------
Q 003271          611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-GSCAGVFK-------  680 (835)
Q Consensus       611 ~Latgs~--Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-~~~~~~~~-------  680 (835)
                      +|+++..  ++.|.|+|+.+.+. +..+... +   |..+.|.+...+++.+.||.+.+.++.+ ++......       
T Consensus       150 ~lyVan~~~~~~VsVID~~t~~v-v~tI~v~-g---~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~~~~~~~  224 (386)
T 3sjl_D          150 TLLFYQFSPAPAVGVVDLEGKAF-KRMLDVP-D---CYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPED  224 (386)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEE-EEEEECC-S---EEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTT
T ss_pred             EEEEEEcCCCCeEEEEECCCCcE-EEEEECC-C---cceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecceecccc
Confidence            9998874  68999999998764 4444321 1   2223455555666777799999999976 55422111       


Q ss_pred             cCc-eEEEEecCCCEEEEEEcCCcEEEEECCCCe--EEEEEc---------C-CCCCeEEEEEcCCCCEEEEEe-C----
Q 003271          681 SGA-TQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQ---------G-HKNQVHSVCWNTSGEYLASVS-D----  742 (835)
Q Consensus       681 ~~i-~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i~~l~---------~-h~~~I~sl~fspdg~~Lasgs-D----  742 (835)
                      ..+ ....|.+.++.++..+.+|.|+++|+.+..  .+..+.         + ....+..+++++++..++... +    
T Consensus       225 ~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~  304 (386)
T 3sjl_D          225 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEW  304 (386)
T ss_dssp             SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTT
T ss_pred             ccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEecccccc
Confidence            111 124555444566667778999999997653  322221         0 122334577789988888764 1    


Q ss_pred             ------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEEc-CCeEEEEEcCCCcEEEeccCCCCeeEEE
Q 003271          743 ------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIGC-YETLELWNMTENKTLTLSAHDKLVSSLA  814 (835)
Q Consensus       743 ------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs~-dg~I~IwDl~~~~~~~l~~h~~~V~~la  814 (835)
                            +.|.++|+.+.   +.+..+.. ...++.|+++++++ .|+++.. ++.|.++|..+++.+......+..+.|.
T Consensus       305 ~hk~~~~~V~viD~~t~---kv~~~i~v-g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~~~p~~l~  380 (386)
T 3sjl_D          305 RHKTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVI  380 (386)
T ss_dssp             CTTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEE
T ss_pred             ccCCCCCEEEEEECCCC---eEEEEEEC-CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCCCCCceeE
Confidence                  47999999998   56666554 34788999999996 6777654 7899999999999986555556666777


Q ss_pred             EeCC
Q 003271          815 ASTV  818 (835)
Q Consensus       815 ~spd  818 (835)
                      +++|
T Consensus       381 ~s~d  384 (386)
T 3sjl_D          381 TTAD  384 (386)
T ss_dssp             EECC
T ss_pred             ECCc
Confidence            7776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=7.5e-13  Score=159.34  Aligned_cols=266  Identities=12%  Similarity=-0.005  Sum_probs=171.1

Q ss_pred             eCCCCEEEEEeCCC-----eEEEEEcCCCeEEEEe------ccCCCCeEEEEECCCCCEEEEE-----ECCCeEEEEecC
Q 003271          564 SPDGKLLATGGHDK-----KAVLWCTESFTVKSTL------EEHTQWITDVRFSPSLSRLATS-----SADRTVRVWDTE  627 (835)
Q Consensus       564 Spdg~~Lasgs~Dg-----~I~VWd~~t~~~i~~l------~~h~~~V~sv~fspdg~~Latg-----s~Dg~I~IWDl~  627 (835)
                      +++|++++....++     .|.+.+...++....+      .+|...+.+++|+|||++|+.+     +.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            37888887766543     3444455455433333      2455579999999999999843     345689999999


Q ss_pred             CCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc-------------EEEEECCCCee--eeEee-----cCceEE
Q 003271          628 NPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE-------------IRYWSINNGSC--AGVFK-----SGATQM  686 (835)
Q Consensus       628 t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~-------------I~iwDl~s~~~--~~~~~-----~~i~~l  686 (835)
                      +++.. ...+..  .....++|+|+|+.++++ +.|..             |++|++.++..  ...+.     ..+..+
T Consensus       156 tg~~~~~~~~~~--~~~~~~~wspDg~~l~~~-~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~  232 (695)
T 2bkl_A          156 SGEWSKVDVIEG--GKYATPKWTPDSKGFYYE-WLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQS  232 (695)
T ss_dssp             TCCBCSSCCBSC--CTTCCCEECTTSSEEEEE-ECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEE
T ss_pred             CCCCcCCcccCc--ccccceEEecCCCEEEEE-EecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEE
Confidence            87742 111111  112689999999866654 44544             99999988762  22222     236788


Q ss_pred             EEecCCCEEEEEEcCC----cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcce
Q 003271          687 RFQPRLGRILAAAIEN----YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC  758 (835)
Q Consensus       687 ~fsp~~~~ll~~s~dg----~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~  758 (835)
                      .|+|+|.+|++++.++    .|+++|..++.... +..+...+....| ++|.+++.+.    ++.|.+||+.++.....
T Consensus       233 ~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~-l~~~~~~~~~~~~-~~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~  310 (695)
T 2bkl_A          233 DLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRL-LVKGVGAKYEVHA-WKDRFYVLTDEGAPRQRVFEVDPAKPARASW  310 (695)
T ss_dssp             EECTTSCCEEEEEEETTTEEEEEEECTTCSSCEE-EEECSSCCEEEEE-ETTEEEEEECTTCTTCEEEEEBTTBCSGGGC
T ss_pred             EECCCCCEEEEEEeCCCCceEEEEEcCCCCceEE-eecCCCceEEEEe-cCCcEEEEECCCCCCCEEEEEeCCCCCccCC
Confidence            9999999998888766    67888776654433 3335555666667 5565444443    36899999977632112


Q ss_pred             EEEeecC-CCceEEEEEeCCCCEEEEEEcCCeEEEEEcC-CCc-EEEeccC-CCCeeEEEEeCCCCEEEEEE----CCCc
Q 003271          759 IHELSCT-GNKFHSCVFHPTFPSLLVIGCYETLELWNMT-ENK-TLTLSAH-DKLVSSLAASTVNGMVASAS----HDKC  830 (835)
Q Consensus       759 i~~l~~~-~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~-~~~-~~~l~~h-~~~V~~la~spdg~~LaSgs----~DG~  830 (835)
                      ...+..+ ...+..++|+ ++..+++...++..+||.+. +++ ...+..+ .+.|..+++++++..|+...    ..++
T Consensus       311 ~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~  389 (695)
T 2bkl_A          311 KEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVRVATLKGKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQ  389 (695)
T ss_dssp             EEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEEEEETTCCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEE
T ss_pred             eEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCE
Confidence            2223222 4567888888 66677778888876666543 344 3345444 67788899999987665332    3467


Q ss_pred             EEEeC
Q 003271          831 VKIWK  835 (835)
Q Consensus       831 V~IWd  835 (835)
                      |++||
T Consensus       390 v~~~d  394 (695)
T 2bkl_A          390 IYKTS  394 (695)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88875

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.52  E-value=1.9e-12  Score=145.87  Aligned_cols=266  Identities=8%  Similarity=0.043  Sum_probs=188.0

Q ss_pred             CCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEecCCC
Q 003271          565 PDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENP  629 (835)
Q Consensus       565 pdg~~Lasgs~D-----g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~IWDl~t~  629 (835)
                      ++++.+++....     +.|.++|..+++.+.++..-..+  .++++||+++|+++.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            466666555442     69999999999999999765555  899999999988886          3678999999987


Q ss_pred             CceeEEee-c------CCCCeEEEEEcCCCCcEEEEEeC-CCcEEEEECCCCeeeeEeecCceEEEEecCC-CEEEEEEc
Q 003271          630 DYSLRTFT-G------HSTTVMSLDFHPSKEDLLCSCDN-NSEIRYWSINNGSCAGVFKSGATQMRFQPRL-GRILAAAI  700 (835)
Q Consensus       630 ~~~~~~~~-~------h~~~V~sl~fsp~g~~ll~sgs~-Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~-~~ll~~s~  700 (835)
                      +. +..+. +      .......+.|+|++++++++... ++.|.++|+.+.+.+..+..+-. ....|++ ..+++.+.
T Consensus       160 ~v-v~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~-~~~~p~g~~~~v~~~~  237 (426)
T 3c75_H          160 LP-IADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC-YHIFPASPTVFYMNCR  237 (426)
T ss_dssp             CE-EEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-EEEEEEETTEEEEEET
T ss_pred             cE-EEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc-eeeccCCCcEEEEEcC
Confidence            75 44332 2      12345678999999987776643 68999999999999888875433 3344443 56677788


Q ss_pred             CCcEEEEECCCCeEEEEE----cCCCCCe-EEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec----------
Q 003271          701 ENYISILDVETQVCRLKL----QGHKNQV-HSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC----------  764 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l----~~h~~~I-~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~----------  764 (835)
                      ||.+.+.++.+++.....    .....++ ..+.|.+++..++..+ .+.|.+.|+..... ..+..+..          
T Consensus       238 dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~-~v~~~~~~~~~~~i~~g~  316 (426)
T 3c75_H          238 DGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGA-TFRAPIEALTEAERADDW  316 (426)
T ss_dssp             TSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCE-EECCCEESSCTTTGGGTE
T ss_pred             CCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCce-EEeeeeeecccccccccc
Confidence            899998898666554321    1111121 2356788888777777 88999999865421 11111110          


Q ss_pred             CCCceEEEEEeCCCCEEEEEEc----------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEE
Q 003271          765 TGNKFHSCVFHPTFPSLLVIGC----------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVK  832 (835)
Q Consensus       765 ~~~~V~sv~fspdg~~L~sgs~----------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~DG~V~  832 (835)
                      .......++++|++..+++...          ++.|.++|+.+.+.+....-.....+|+|++|++ +++++. .++.|.
T Consensus       317 ~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~Vs  396 (426)
T 3c75_H          317 RPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLH  396 (426)
T ss_dssp             EECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEE
T ss_pred             ccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEE
Confidence            0111223689999998888753          3479999999999884444444689999999999 888888 589999


Q ss_pred             EeC
Q 003271          833 IWK  835 (835)
Q Consensus       833 IWd  835 (835)
                      |+|
T Consensus       397 VID  399 (426)
T 3c75_H          397 IYD  399 (426)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            986

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.51  E-value=1e-12  Score=159.34  Aligned_cols=243  Identities=12%  Similarity=0.046  Sum_probs=165.5

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCC-----CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCe--------
Q 003271          554 STSKVESCHFSPDGKLLATGGHD-----KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT--------  620 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~D-----g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~--------  620 (835)
                      |...+.+++|||||++||.+..+     ..|++||+.+++.+... .+...+..++|+|| +.|+.++.|+.        
T Consensus       161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~-~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~  238 (741)
T 1yr2_A          161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADE-LKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQA  238 (741)
T ss_dssp             --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEE-EEEEESCCCEESTT-SEEEEEECCCC--------
T ss_pred             CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCcc-CCCceeccEEEECC-CEEEEEEecCccccccccc
Confidence            44468899999999999887654     46999999999876532 12222367899999 99988887654        


Q ss_pred             ------EEEEecCCCCce-eEEee--cCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEECCCC--eeeeEeec---C
Q 003271          621 ------VRVWDTENPDYS-LRTFT--GHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINNG--SCAGVFKS---G  682 (835)
Q Consensus       621 ------I~IWDl~t~~~~-~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~----Dg~I~iwDl~s~--~~~~~~~~---~  682 (835)
                            |++|++.++... ...+.  .+...+..+.|+|+|+.+++++..    ...|++||+.++  ++...+..   .
T Consensus       239 ~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~  318 (741)
T 1yr2_A          239 LNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKA  318 (741)
T ss_dssp             CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSS
T ss_pred             CCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCc
Confidence                  899999776531 22232  233458899999999877766643    348999999876  31333322   2


Q ss_pred             ceEEEEecCCCEEEEEEcC----CcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcC-CCC
Q 003271          683 ATQMRFQPRLGRILAAAIE----NYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIG-SGS  754 (835)
Q Consensus       683 i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~-t~~  754 (835)
                      .... ++++++.|++.+.+    +.|.+||+.++  .....+..+...+..++|+ ++.++++.. |+..+||.+. .+ 
T Consensus       319 ~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g-  395 (741)
T 1yr2_A          319 QWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDG-  395 (741)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTS-
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCC-
Confidence            3333 45889999888864    45999999874  3444444455567778887 555666666 8877666554 23 


Q ss_pred             CcceEEEeec-CCCceEEEEEeCCCCEEEEEEc----CCeEEEEEcCCCcEEEe
Q 003271          755 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC----YETLELWNMTENKTLTL  803 (835)
Q Consensus       755 ~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~----dg~I~IwDl~~~~~~~l  803 (835)
                        .....+.. ....+..+.++|++..|+....    .+.|++||+.+++...+
T Consensus       396 --~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~~~l  447 (741)
T 1yr2_A          396 --KPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKTTPW  447 (741)
T ss_dssp             --CEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEEEEC
T ss_pred             --CceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcEEEE
Confidence              34555554 3567888999999876664433    25899999998875544

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.50  E-value=8e-12  Score=133.55  Aligned_cols=234  Identities=8%  Similarity=-0.013  Sum_probs=162.3

Q ss_pred             CCCCeEEEEECCCCCEEEE-------EECCCeEEEEecCCCCceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271          596 HTQWITDVRFSPSLSRLAT-------SSADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDNNS  663 (835)
Q Consensus       596 h~~~V~sv~fspdg~~Lat-------gs~Dg~I~IWDl~t~~~~~~~~~~-----h~~~V~sl~fsp~g~~ll~sgs~Dg  663 (835)
                      .-....+++|++++.++++       +..++.|.+||..+++.  ..+..     +...+.++++++++..++++.. ..
T Consensus        16 ~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~~   92 (314)
T 1pjx_A           16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVICKPEVNGYGGIPAGCQCDRDANQLFVADM-RL   92 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEEECCEETTEECCEEEEEECSSSSEEEEEET-TT
T ss_pred             cCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE--EEEEecccCCCCCCCceEEEecCCCcEEEEEC-CC
Confidence            3345789999999988887       57788999999887664  22222     4467899999998333554443 44


Q ss_pred             cEEEEECCCCeeeeE-ee-------cCceEEEEecCCCEEEEEEcC---------------CcEEEEECCCCeEEEEEcC
Q 003271          664 EIRYWSINNGSCAGV-FK-------SGATQMRFQPRLGRILAAAIE---------------NYISILDVETQVCRLKLQG  720 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~-~~-------~~i~~l~fsp~~~~ll~~s~d---------------g~I~IwDl~t~~~i~~l~~  720 (835)
                      .|.+||.. ++.... ..       ..+..+++++++..+++...+               +.|..||.. ++..... .
T Consensus        93 ~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~-~  169 (314)
T 1pjx_A           93 GLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD-T  169 (314)
T ss_dssp             EEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE-E
T ss_pred             CEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec-c
Confidence            79999998 665433 21       236789999998766665544               568888876 5443332 2


Q ss_pred             CCCCeEEEEEc----CCCCEEEEEe--CCeEEEEEcC-CCCC--cceEEEeecCC-CceEEEEEeCCCCEEEEEEcCCeE
Q 003271          721 HKNQVHSVCWN----TSGEYLASVS--DELVRVWSIG-SGSK--GECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETL  790 (835)
Q Consensus       721 h~~~I~sl~fs----pdg~~Lasgs--Dg~I~IwDl~-t~~~--~~~i~~l~~~~-~~V~sv~fspdg~~L~sgs~dg~I  790 (835)
                      +......++|+    ++++.|+.+.  ++.|.+||+. ++..  ...+..+..+. ..+..++++++|..+++...++.|
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i  249 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHI  249 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEE
Confidence            34457889999    9997665554  7899999986 3311  01223333333 568889999999877777788899


Q ss_pred             EEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 003271          791 ELWNMTENKTL-TLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK  835 (835)
Q Consensus       791 ~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~L-aSgs~DG~V~IWd  835 (835)
                      .+||..+++.+ .+..+...+.+++|+++++.| ++...++.|..|+
T Consensus       250 ~~~d~~~g~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~  296 (314)
T 1pjx_A          250 EVFGPDGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFE  296 (314)
T ss_dssp             EEECTTCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEcCCCCcEeEEEeCCCCCceeEEECCCCCEEEEEeCCCCeEEEEe
Confidence            99999866644 445566789999999999955 4555567787764

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.45  E-value=2.7e-10  Score=120.26  Aligned_cols=234  Identities=9%  Similarity=-0.021  Sum_probs=164.1

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE-EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK-STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i-~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~  631 (835)
                      .+...+.+++++++|.++++...++.|.+||.. ++.. ..+......+.++++.+++.++++...++.|..||.. +..
T Consensus        59 ~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~  136 (300)
T 2qc5_A           59 TPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI  136 (300)
T ss_dssp             STTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE
T ss_pred             CCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE
Confidence            445679999999999988877768899999988 5543 2333344678999999999888877768899999987 443


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-e---cCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K---SGATQMRFQPRLGRILAAAIENYISIL  707 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~---~~i~~l~fsp~~~~ll~~s~dg~I~Iw  707 (835)
                      ....+......+.++++.++++ ++++...++.|..||. +++..... .   ..+..+++++++..+++....+.|.+|
T Consensus       137 ~~~~~~~~~~~~~~i~~d~~g~-l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~  214 (300)
T 2qc5_A          137 YEYDLPNKGSYPAFITLGSDNA-LWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIMGNKIGRI  214 (300)
T ss_dssp             EEEECSSTTCCEEEEEECTTSS-EEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEE
T ss_pred             EEccCCCCCCCceeEEECCCCC-EEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccCCCEEEEE
Confidence            2222333456789999999877 6666666789999998 55544321 1   236788899987655544456789999


Q ss_pred             ECCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          708 DVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       708 Dl~t~~~i~-~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      |. ++.... .+..+...+.+++++++|+++++.. ++.|.+||.. +.  .....+......+.++++.++|. |++++
T Consensus       215 ~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~-g~--~~~~~~~~~~~~~~~i~~~~~g~-l~v~~  289 (300)
T 2qc5_A          215 TT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITND-NT--IQEYQLQTENAEPHGITFGKDGS-VWFAL  289 (300)
T ss_dssp             CT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC--EEEEECCSTTCCCCCEEECTTSC-EEEEC
T ss_pred             cC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECCC-Cc--EEEEECCccCCccceeEeCCCCC-EEEEc
Confidence            98 444333 2333556789999999999777665 7899999983 31  12222333456688899999988 44455


Q ss_pred             cCCeEEEEEcC
Q 003271          786 CYETLELWNMT  796 (835)
Q Consensus       786 ~dg~I~IwDl~  796 (835)
                      .. .|..+|.+
T Consensus       290 ~~-~i~~~~p~  299 (300)
T 2qc5_A          290 KC-KIGKLNLN  299 (300)
T ss_dssp             SS-EEEEEEEC
T ss_pred             cC-ceEEeCCC
Confidence            44 77777753

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.44  E-value=7.6e-12  Score=151.71  Aligned_cols=266  Identities=12%  Similarity=0.023  Sum_probs=168.7

Q ss_pred             eCCCCEEEEEeCCCe---EEEE--EcC---CCeEEEEe------ccCCCCeEEEEECCCCCEEEEEECC-----CeEEEE
Q 003271          564 SPDGKLLATGGHDKK---AVLW--CTE---SFTVKSTL------EEHTQWITDVRFSPSLSRLATSSAD-----RTVRVW  624 (835)
Q Consensus       564 Spdg~~Lasgs~Dg~---I~VW--d~~---t~~~i~~l------~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IW  624 (835)
                      +|||++++....++.   ..||  +..   .++....+      .+|...+..++|+|||++|+.++.+     ..|++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            389998877664432   4445  443   33332221      2344468899999999999887654     469999


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-------------cEEEEECCCCee--eeEee--c---Cce
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-------------EIRYWSINNGSC--AGVFK--S---GAT  684 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-------------~I~iwDl~s~~~--~~~~~--~---~i~  684 (835)
                      |+.+++. +.. ..+...+..++|+|+ +.++++...+.             .|++|++.++..  ...+.  .   .+.
T Consensus       195 dl~tg~~-~~~-~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~  271 (741)
T 1yr2_A          195 GVADGKP-LAD-ELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGH  271 (741)
T ss_dssp             ETTTCCE-EEE-EEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEE
T ss_pred             ECCCCCC-CCc-cCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEE
Confidence            9998774 222 112222457899999 77776654322             399999987652  22222  1   267


Q ss_pred             EEEEecCCCEEEEEEcCC-----cEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C----CeEEEEEcCC
Q 003271          685 QMRFQPRLGRILAAAIEN-----YISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D----ELVRVWSIGS  752 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~dg-----~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D----g~I~IwDl~t  752 (835)
                      .+.|+|+|.+|++.+.++     .|++||+.++  .+...+..+...+.... +++|..|+..+ +    +.|.+||+.+
T Consensus       272 ~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~  350 (741)
T 1yr2_A          272 GASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSG  350 (741)
T ss_dssp             EEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSS
T ss_pred             EEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCC
Confidence            889999999998888654     8999999877  31344555555555554 48888887776 2    3699999877


Q ss_pred             CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--EcCCCcEEEecc-CCCCeeEEEEeCCCCEEE-EEE--
Q 003271          753 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTLSA-HDKLVSSLAASTVNGMVA-SAS--  826 (835)
Q Consensus       753 ~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l~~-h~~~V~~la~spdg~~La-Sgs--  826 (835)
                      +. ......+..+...+..+.|+ ++..+++...++..+||  ++..+....+.. +...|..++++++++.|+ +.+  
T Consensus       351 ~~-~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~  428 (741)
T 1yr2_A          351 ST-PRFDTVVPESKDNLESVGIA-GNRLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSF  428 (741)
T ss_dssp             SS-CEEEEEECCCSSEEEEEEEE-BTEEEEEEEETTEEEEEEEETTSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEET
T ss_pred             Cc-cccEEEecCCCCeEEEEEEE-CCEEEEEEEECCEEEEEEEeCCCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCC
Confidence            42 12233334444556677887 55567777778865555  544443334443 467789999999987554 332  


Q ss_pred             -CCCcEEEeC
Q 003271          827 -HDKCVKIWK  835 (835)
Q Consensus       827 -~DG~V~IWd  835 (835)
                       ..++|++||
T Consensus       429 ~~P~~i~~~d  438 (741)
T 1yr2_A          429 TQPATVLALD  438 (741)
T ss_dssp             TEEEEEEEEE
T ss_pred             CCCCEEEEEE
Confidence             346787775

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.42  E-value=6.5e-11  Score=126.06  Aligned_cols=213  Identities=12%  Similarity=0.042  Sum_probs=162.5

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCC-CCEEEEEEeCCCCEEEEEeCCCeEEEEE
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPAST-SKVESCHFSPDGKLLATGGHDKKAVLWC  583 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~-~~V~sl~fSpdg~~Lasgs~Dg~I~VWd  583 (835)
                      .++++++++.|+.|.+|...++                   +.+..+..+. ..+.+++++|+|++|+  +.++.|..||
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG-------------------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d   62 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTK-------------------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMIT   62 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTT-------------------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEEC
T ss_pred             CCcEEEeeCCCCEEEEEECCCC-------------------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEEC
Confidence            3578999999999999943222                   1223334444 4688999999999988  3578899999


Q ss_pred             cCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEee------cCCCCeEEEEEcCCCCcE
Q 003271          584 TESFTVKSTLEEHT-QWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       584 ~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~------~h~~~V~sl~fsp~g~~l  655 (835)
                      . +++.+..+..+. ..+.++.+.++|++|++.+. ++.|..+|.+ ++. +..+.      .+......+++.++++ +
T Consensus        63 ~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~-Gk~-l~~~~~~~~~~~~~~~~~~v~~~~~G~-~  138 (276)
T 3no2_A           63 R-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMK-GEV-LSKTEFETGIERPHAQFRQINKNKKGN-Y  138 (276)
T ss_dssp             T-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTT-SCE-EEEEEECCSCSSGGGSCSCCEECTTSC-E
T ss_pred             C-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCC-CCE-EEEEeccCCCCcccccccCceECCCCC-E
Confidence            9 899998887653 57889999999999999887 7778878763 443 33332      1222455667888876 6


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC------CCeEE
Q 003271          656 LCSCDNNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK------NQVHS  727 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------~~I~s  727 (835)
                      +++...++.|.+||.. ++.+..+..  ....+.+.++++.++++..++.|..+|..+++.+..+..+.      ..+..
T Consensus       139 lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~  217 (276)
T 3no2_A          139 LVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQ  217 (276)
T ss_dssp             EEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEE
T ss_pred             EEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCcccccccc
Confidence            6688889999999998 998888874  46677888998888888888899999999999999886432      23778


Q ss_pred             EEEcCCCCEEEEEeCC
Q 003271          728 VCWNTSGEYLASVSDE  743 (835)
Q Consensus       728 l~fspdg~~LasgsDg  743 (835)
                      +...++|.++++..+|
T Consensus       218 ~~~~~~G~i~v~~~~g  233 (276)
T 3no2_A          218 LFPLQNGGLYICNWQG  233 (276)
T ss_dssp             EEECTTSCEEEEEECT
T ss_pred             ceEcCCCCEEEEeccC
Confidence            8889999988887643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.42  E-value=7e-11  Score=133.09  Aligned_cols=228  Identities=10%  Similarity=0.030  Sum_probs=160.6

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCee
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSC  675 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~  675 (835)
                      .....|+|+++++++++...++.|++||..++.. ...... ..... ++|+++++.++ +++.++  .|.+|+...+..
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~-~~~~~~-~~~~~-ia~~~~g~~l~-~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKV-TTVHPG-FKGGK-PAVTKDKQRVY-SIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEE-EEEEET-CCBCB-CEECTTSSEEE-EEBSSTTCEEEEEEGGGTTC
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEE-EEeecc-CCCCc-eeEecCCCcEE-EEecCCCceEEEEEcCCCce
Confidence            3578999999998777777789999999987553 233332 33334 99999987555 444444  899999876654


Q ss_pred             eeEe-------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE----EcCCCCCe--EEEEEcCCCCEEEEEe-
Q 003271          676 AGVF-------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK----LQGHKNQV--HSVCWNTSGEYLASVS-  741 (835)
Q Consensus       676 ~~~~-------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~----l~~h~~~I--~sl~fspdg~~Lasgs-  741 (835)
                      ...+       ......++++|+++.|+++..++.|+.||..++.....    ..++...-  ..++|+|++..|+.+. 
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            3333       13467899999778888877778999999987764333    22222222  3899999644444444 


Q ss_pred             -CCeEEEEEcCCCCCcceEEEeecC---------------CCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEec
Q 003271          742 -DELVRVWSIGSGSKGECIHELSCT---------------GNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLS  804 (835)
Q Consensus       742 -Dg~I~IwDl~t~~~~~~i~~l~~~---------------~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~  804 (835)
                       ++.|++|+....     +..+.++               -.....+++++++.++++-. .++.|++|++.++.+..+.
T Consensus       287 ~~~~I~~~~~~g~-----~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          287 NLSSVYKITPDGE-----CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             TTTEEEEECTTCC-----EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             CCCEEEEEecCCC-----EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence             789999987543     2222222               24578999999999555555 5779999998888877665


Q ss_pred             cC---------------CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          805 AH---------------DKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       805 ~h---------------~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ++               -.....|++++++.++++-..+++|+.+
T Consensus       362 g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i  406 (409)
T 3hrp_A          362 GQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKY  406 (409)
T ss_dssp             ECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEE
T ss_pred             CCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEE
Confidence            55               2468899999998888888788888765

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.41  E-value=2.2e-11  Score=137.23  Aligned_cols=245  Identities=13%  Similarity=0.178  Sum_probs=173.7

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECCCCC
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPSLS  610 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fspdg~  610 (835)
                      +..+..-..+  .++++|||++|+++.          .++.|.++|..+++.+.++.-.       ......++|+||++
T Consensus       112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk  189 (426)
T 3c75_H          112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK  189 (426)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred             EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            3444433445  799999999888775          3678999999999998877532       23456789999999


Q ss_pred             EEEEEEC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----eecC--
Q 003271          611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FKSG--  682 (835)
Q Consensus       611 ~Latgs~--Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~~~--  682 (835)
                      +|+++..  ++.|.++|+.+.+. +..+....    +....|++...+++.+.||.+.+.++.+++....    +...  
T Consensus       190 ~lyV~n~~~~~~VsVID~~t~kv-v~~I~v~g----~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~  264 (426)
T 3c75_H          190 NLLFYQFSPAPAVGVVDLEGKTF-DRMLDVPD----CYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDE  264 (426)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEE-EEEEECCS----EEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTS
T ss_pred             EEEEEecCCCCeEEEEECCCCeE-EEEEEcCC----ceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCC
Confidence            9999875  57899999998774 44443211    1344565656777777889988888866655422    1111  


Q ss_pred             --ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE--EEcC----------CCCCeEEEEEcCCCCEEEEEe-------
Q 003271          683 --ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQG----------HKNQVHSVCWNTSGEYLASVS-------  741 (835)
Q Consensus       683 --i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~--~l~~----------h~~~I~sl~fspdg~~Lasgs-------  741 (835)
                        ...+.|.++++.++..+.++.|+++|+.......  .+.-          .......+++++++..+++..       
T Consensus       265 p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gt  344 (426)
T 3c75_H          265 LLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWK  344 (426)
T ss_dssp             CBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTC
T ss_pred             ceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEeccccccc
Confidence              1235678999988888888999999997654321  1110          011122368999988777653       


Q ss_pred             ----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC-EEEEEE-cCCeEEEEEcCCCcEEEe
Q 003271          742 ----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP-SLLVIG-CYETLELWNMTENKTLTL  803 (835)
Q Consensus       742 ----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~-~L~sgs-~dg~I~IwDl~~~~~~~l  803 (835)
                          ++.|.++|+.+.   +.+.++.. ......+.|+|+++ .++++. .++.|.|+|+.+++.+..
T Consensus       345 hk~~s~~VsVID~~T~---kvv~~I~v-g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~t  408 (426)
T 3c75_H          345 HKAASRFVVVLNAETG---ERINKIEL-GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRS  408 (426)
T ss_dssp             TTSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             ccCCCCEEEEEECCCC---eEEEEEEC-CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEE
Confidence                247999999998   56666653 23588999999999 888888 488999999999998844

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=3.3e-10  Score=121.32  Aligned_cols=226  Identities=10%  Similarity=0.032  Sum_probs=154.2

Q ss_pred             eccCCCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC
Q 003271          593 LEEHTQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN  671 (835)
Q Consensus       593 l~~h~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~  671 (835)
                      +..+.....+..|+++ +.++++...++.|+.||..++..  ..+ .....+.+++++++++ ++++ . +..|.+||..
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~-~~~~~~~~i~~~~dG~-l~v~-~-~~~l~~~d~~   81 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQV--QRV-TMDAPVSSVALRQSGG-YVAT-I-GTKFCALNWK   81 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCE--EEE-ECSSCEEEEEEBTTSS-EEEE-E-TTEEEEEETT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcE--EEE-eCCCceEEEEECCCCC-EEEE-E-CCeEEEEECC
Confidence            3445556678999996 44566666788999999987653  222 2456799999999988 5444 3 5689999998


Q ss_pred             CCeeeeEee-------cCceEEEEecCCCEEEEEEcC-----------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271          672 NGSCAGVFK-------SGATQMRFQPRLGRILAAAIE-----------NYISILDVETQVCRLKLQGHKNQVHSVCWNTS  733 (835)
Q Consensus       672 s~~~~~~~~-------~~i~~l~fsp~~~~ll~~s~d-----------g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd  733 (835)
                      +++......       ..+..+++++++..+++...+           +.|+.+|.. ++... +..+......++|+|+
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~-~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPD-HHVKK-YFDQVDISNGLDWSLD  159 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEE-EEEEESBEEEEEECTT
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECC-CCEEE-EeeccccccceEEcCC
Confidence            887544332       125678999998855544322           245555543 33322 2223445688999999


Q ss_pred             CCEEEEEe--CCeEEEEEcC--CCCC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC
Q 003271          734 GEYLASVS--DELVRVWSIG--SGSK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH  806 (835)
Q Consensus       734 g~~Lasgs--Dg~I~IwDl~--t~~~--~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h  806 (835)
                      ++.|+.+.  ++.|.+||+.  ++..  ...+..+......+..++++++|...++....+.|.+||..+++.+ .+..+
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p  239 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLP  239 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECS
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECC
Confidence            99776655  7899999984  4321  1122333334467889999999986666666779999999988877 55556


Q ss_pred             CCCeeEEEEe-CCCCEEEEEE
Q 003271          807 DKLVSSLAAS-TVNGMVASAS  826 (835)
Q Consensus       807 ~~~V~~la~s-pdg~~LaSgs  826 (835)
                      ...+++++|. |+++.|+.++
T Consensus       240 ~~~~t~~~f~g~d~~~L~vt~  260 (297)
T 3g4e_A          240 VDKTTSCCFGGKNYSEMYVTC  260 (297)
T ss_dssp             SSBEEEEEEESGGGCEEEEEE
T ss_pred             CCCceEEEEeCCCCCEEEEEc
Confidence            6789999998 7877655444

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.40  E-value=4.1e-10  Score=120.55  Aligned_cols=226  Identities=12%  Similarity=0.117  Sum_probs=157.9

Q ss_pred             ecCCCCCEEEEEEeCCC-CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          551 IPASTSKVESCHFSPDG-KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg-~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +..+..-..+..|++++ .++++...++.|..||..+++.. .+ .+...+.+++|+++++++++ . ++.|.+||..++
T Consensus         8 ~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~-~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g   83 (297)
T 3g4e_A            8 LPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RV-TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQ   83 (297)
T ss_dssp             ECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EE-ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTT
T ss_pred             eccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EE-eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCC
Confidence            44455567789999964 45666667899999999887653 33 24567999999999995554 4 567999999876


Q ss_pred             CceeEEeec-----CCCCeEEEEEcCCCCcEEEEEeC-----------CCcEEEEECCCCeeeeEee--cCceEEEEecC
Q 003271          630 DYSLRTFTG-----HSTTVMSLDFHPSKEDLLCSCDN-----------NSEIRYWSINNGSCAGVFK--SGATQMRFQPR  691 (835)
Q Consensus       630 ~~~~~~~~~-----h~~~V~sl~fsp~g~~ll~sgs~-----------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~  691 (835)
                      ..  ..+..     ....+.+++++|+|+ ++++...           .+.|+.++.. ++......  .....++|+|+
T Consensus        84 ~~--~~~~~~~~~~~~~~~~di~~d~dG~-l~~~~~~~~~~~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi~~spd  159 (297)
T 3g4e_A           84 SA--VVLATVDNDKKNNRFNDGKVDPAGR-YFAGTMAEETAPAVLERHQGALYSLFPD-HHVKKYFDQVDISNGLDWSLD  159 (297)
T ss_dssp             EE--EEEEECCTTCSSEEEEEEEECTTSC-EEEEEEECCSBTTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEEEECTT
T ss_pred             cE--EEEEecCCCCCCCCCCCEEECCCCC-EEEecCCcccccccccCCCcEEEEEECC-CCEEEEeeccccccceEEcCC
Confidence            53  22221     123578899999987 4444321           1344444443 33322222  33578999999


Q ss_pred             CCEEEEEEc-CCcEEEEEC--CCCeE-----EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe
Q 003271          692 LGRILAAAI-ENYISILDV--ETQVC-----RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL  762 (835)
Q Consensus       692 ~~~ll~~s~-dg~I~IwDl--~t~~~-----i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l  762 (835)
                      ++.++++.. ++.|.+||+  .++..     ...+..+...+..++++++|++.++.. ++.|.+||..++   +.+..+
T Consensus       160 g~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG---~~~~~i  236 (297)
T 3g4e_A          160 HKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTG---KRLQTV  236 (297)
T ss_dssp             SCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTC---CEEEEE
T ss_pred             CCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCc---eEEEEE
Confidence            998876665 688999987  45432     223333446788999999998888777 778999999877   677777


Q ss_pred             ecCCCceEEEEEe-CCCCEEEEEEcC
Q 003271          763 SCTGNKFHSCVFH-PTFPSLLVIGCY  787 (835)
Q Consensus       763 ~~~~~~V~sv~fs-pdg~~L~sgs~d  787 (835)
                      ..+...+++|+|. |+++.|++++..
T Consensus       237 ~~p~~~~t~~~f~g~d~~~L~vt~~~  262 (297)
T 3g4e_A          237 KLPVDKTTSCCFGGKNYSEMYVTCAR  262 (297)
T ss_dssp             ECSSSBEEEEEEESGGGCEEEEEEBC
T ss_pred             ECCCCCceEEEEeCCCCCEEEEEcCC
Confidence            7777789999998 898888887764

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.40  E-value=1.1e-11  Score=149.29  Aligned_cols=244  Identities=14%  Similarity=0.051  Sum_probs=167.3

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEe-----CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCe-------
Q 003271          553 ASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT-------  620 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~-------  620 (835)
                      +|...|..++|||||++||.+.     ....|+|||+++++.+... .+......++|+ |++.|+.++.+..       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~  203 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETP-LKDVKFSGISWL-GNEGFFYSSYDKPDGSELSA  203 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEE-EEEEESCCCEEE-TTTEEEEEESSCCC------
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccc-cCCceeccEEEe-CCCEEEEEEecCcccccccc
Confidence            3555688999999999988543     2357999999999865431 111113578899 9999999888743       


Q ss_pred             ------EEEEecCCCCce-eEEe--ec-CCCCeEEEEEcCCCCcEEEEEeCC---CcEEEEECCCCe-eeeEeecC--ce
Q 003271          621 ------VRVWDTENPDYS-LRTF--TG-HSTTVMSLDFHPSKEDLLCSCDNN---SEIRYWSINNGS-CAGVFKSG--AT  684 (835)
Q Consensus       621 ------I~IWDl~t~~~~-~~~~--~~-h~~~V~sl~fsp~g~~ll~sgs~D---g~I~iwDl~s~~-~~~~~~~~--i~  684 (835)
                            |++|++.+.... ...+  .. |...+..+.|+|+++.++++.+.+   ..|+++|+.++. ....+...  ..
T Consensus       204 ~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~  283 (693)
T 3iuj_A          204 RTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDAD  283 (693)
T ss_dssp             -CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSC
T ss_pred             cCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCce
Confidence                  999999876531 2222  23 445678899999999887776533   589999997763 23333222  22


Q ss_pred             EEEEecCCCEEEEEEcC----CcEEEEECCCCeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCC
Q 003271          685 QMRFQPRLGRILAAAIE----NYISILDVETQVC--RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGS  754 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~  754 (835)
                      ...++++++.|++.+..    +.|.++|+.++..  ...+..|...+.  .|++++++|+...  ++  .|++||+..+ 
T Consensus       284 ~~~~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~g~-  360 (693)
T 3iuj_A          284 VSLVDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYEGK-  360 (693)
T ss_dssp             EEEEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTTSC-
T ss_pred             EEEEeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECCCC-
Confidence            22277788887776653    5799999987643  234555666655  8889999888776  55  7889988743 


Q ss_pred             CcceEEEeec-CCCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCcEEEec
Q 003271          755 KGECIHELSC-TGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKTLTLS  804 (835)
Q Consensus       755 ~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~~~~l~  804 (835)
                         ....+.. ....+..+.+++++..|+....+    +.|+.||+.+++...+.
T Consensus       361 ---~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~~l~  412 (693)
T 3iuj_A          361 ---RVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAISLYR  412 (693)
T ss_dssp             ---EEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEEEEE
T ss_pred             ---eeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEEEEE
Confidence               3334432 33557777888888877776655    69999999888765443

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.40  E-value=8.4e-12  Score=136.85  Aligned_cols=257  Identities=9%  Similarity=-0.013  Sum_probs=170.1

Q ss_pred             CCEEEEEEeCCCCEEEEEe--CCCeEEEEEcCCCeEEEEe-------ccCCCCeEEEEECCCCCEEEEEEC-----CCeE
Q 003271          556 SKVESCHFSPDGKLLATGG--HDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPSLSRLATSSA-----DRTV  621 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs--~Dg~I~VWd~~t~~~i~~l-------~~h~~~V~sv~fspdg~~Latgs~-----Dg~I  621 (835)
                      ..+..++++++|+++++..  .++.++||.+.+++.. .+       ..|-..+.+|+|+++++++++-..     ++.|
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~~-~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i   95 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGLI-PFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKL   95 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEEE-ESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSCCEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCee-cCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCCCeE
Confidence            6799999999999988864  2343556655455543 22       134568999999999876665433     5789


Q ss_pred             EEEecCCCCceeEEeec------CCCCeEEEEEcCCCCcEEEEEe---CCCcEEEEECCCCeeeeEeecC--ce--EEEE
Q 003271          622 RVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCSCD---NNSEIRYWSINNGSCAGVFKSG--AT--QMRF  688 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~sgs---~Dg~I~iwDl~s~~~~~~~~~~--i~--~l~f  688 (835)
                      .+||+.+++. +..+..      +...+..+++++++..++++..   .++.|.+||+.+++..+.+..+  ..  ...+
T Consensus        96 ~~~d~~tg~~-~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~  174 (343)
T 2qe8_A           96 VAWDTLNNQL-SRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDL  174 (343)
T ss_dssp             EEEETTTTEE-EEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCC
T ss_pred             EEEECCCCeE-EEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccce
Confidence            9999987763 333332      2245689999987666766665   6889999999988876655331  10  1334


Q ss_pred             ecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC-eEEEEEcCC---CCC--cc---e
Q 003271          689 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE-LVRVWSIGS---GSK--GE---C  758 (835)
Q Consensus       689 sp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg-~I~IwDl~t---~~~--~~---~  758 (835)
                      .+++..+.+...++.+..|.              ..+..|+|+|+|++|+.+. ++ .|..++...   +..  ..   .
T Consensus       175 ~~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  240 (343)
T 2qe8_A          175 VIDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSK  240 (343)
T ss_dssp             EETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTT
T ss_pred             eECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcc
Confidence            44555555555666654442              2467899999999888887 44 666665421   100  00   0


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc--CCCCeeEEEEeCCCCEEEEEECCC
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA--HDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~--h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      +. ..++......++++++|..+++...++.|.+||..+++...+..  +...+.+++|.+++.++++.+..+
T Consensus       241 ~~-~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~  312 (343)
T 2qe8_A          241 IE-RYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGYLYFDCNQLH  312 (343)
T ss_dssp             CE-EEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSCEEEEECCGG
T ss_pred             eE-ecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECCceecCCeeEECCCCcEEEEeCccc
Confidence            11 11233456678999999877777778899999985666543332  245689999999998888876443

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.38  E-value=2.7e-10  Score=128.25  Aligned_cols=230  Identities=10%  Similarity=0.037  Sum_probs=164.6

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--eEEEEecCCCCcee
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSL  633 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~~  633 (835)
                      ....+++|+++++++++...++.|++||.+++.......... ... ++|++++..|+++..++  .|.+|+...... .
T Consensus       131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~-~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~-~  207 (409)
T 3hrp_A          131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFK-GGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWA-P  207 (409)
T ss_dssp             CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCC-BCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTC-E
T ss_pred             CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCC-CCc-eeEecCCCcEEEEecCCCceEEEEEcCCCce-e
Confidence            468899999999988887778999999999887776654433 334 99999999999988866  799998876543 2


Q ss_pred             EEe----ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE----ee--cC-c-e-EEEEecCCCEEEEEEc
Q 003271          634 RTF----TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV----FK--SG-A-T-QMRFQPRLGRILAAAI  700 (835)
Q Consensus       634 ~~~----~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~----~~--~~-i-~-~l~fsp~~~~ll~~s~  700 (835)
                      ..+    ......+.+++++|++..+++ +..++.|+.||..++.....    ..  .. . . .++|+|+++.++++..
T Consensus       208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~  286 (409)
T 3hrp_A          208 TRIGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQ  286 (409)
T ss_dssp             EEEEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred             EEeeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeC
Confidence            233    224567889999996565665 66788999999987764332    11  11 2 2 8999997777776664


Q ss_pred             -CCcEEEEECCCCeEEEEEcCCC---------------CCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEe
Q 003271          701 -ENYISILDVETQVCRLKLQGHK---------------NQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHEL  762 (835)
Q Consensus       701 -dg~I~IwDl~t~~~i~~l~~h~---------------~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l  762 (835)
                       ++.|+.||....  +..+.++.               .....++++++|+++++-.  ++.|++||+.++   . +..+
T Consensus       287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G---~-v~~~  360 (409)
T 3hrp_A          287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDG---Y-VSTV  360 (409)
T ss_dssp             TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTT---E-EEEE
T ss_pred             CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCC---E-EEEE
Confidence             578999998754  22332222               3578999999999777654  569999997665   2 3333


Q ss_pred             ecC---------------CCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          763 SCT---------------GNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       763 ~~~---------------~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      .++               -.....+++++++..+++-..++.|+.+++
T Consensus       361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence            333               245889999999765555556678888775

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.35  E-value=1.4e-09  Score=118.14  Aligned_cols=219  Identities=16%  Similarity=0.096  Sum_probs=153.6

Q ss_pred             CEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       557 ~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      -..+.+|++++. ++++...++.|.+||..+++... +. +...|.+++|+++++++++. .+ .|.+||..++..  ..
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~--~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVL--TL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCE--EE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcE--EE
Confidence            457789999754 56666678899999998876543 32 34679999999999877654 44 499999987663  22


Q ss_pred             eecC-----CCCeEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEc-C
Q 003271          636 FTGH-----STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAI-E  701 (835)
Q Consensus       636 ~~~h-----~~~V~sl~fsp~g~~ll~sgs~------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~-d  701 (835)
                      +...     ...+.+++++|+|. ++++...      .+.|+.++  +++......  .....++|+++++.++++.. +
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~-l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGA-LWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSC-EEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeCCCCCCCCCCCCEEECCCCC-EEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCC
Confidence            2211     23588999999987 4444332      25666666  455433222  23568999999988777654 5


Q ss_pred             CcEEEEECC--CC-e-----EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          702 NYISILDVE--TQ-V-----CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       702 g~I~IwDl~--t~-~-----~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      +.|.+||+.  ++ .     ....+......+..++++++|.++++.. ++.|.+||. ++   +.+..+..+...+.++
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g---~~~~~i~~~~~~~~~~  276 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCP  276 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CC---CEEEEEECCCCCcEEE
Confidence            889999986  55 2     2333333445678899999999887776 689999998 44   4556666666779999


Q ss_pred             EEe-CCCCEEEEEEcCC
Q 003271          773 VFH-PTFPSLLVIGCYE  788 (835)
Q Consensus       773 ~fs-pdg~~L~sgs~dg  788 (835)
                      +|. +++..|++++..+
T Consensus       277 af~g~d~~~L~vt~~~~  293 (326)
T 2ghs_A          277 AFIGPDASRLLVTSARE  293 (326)
T ss_dssp             EEESTTSCEEEEEEBCT
T ss_pred             EEecCCCCEEEEEecCC
Confidence            998 8888887776554

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.34  E-value=2.3e-11  Score=134.78  Aligned_cols=256  Identities=10%  Similarity=0.029  Sum_probs=173.6

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECCC
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS  608 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fspd  608 (835)
                      +.+..+..-..+  .+.|+||+++|+++.          .++.|.+||+.+++.+.++..+       ......++|+||
T Consensus        57 ~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpD  134 (368)
T 1mda_H           57 VTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCAS  134 (368)
T ss_dssp             EEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTT
T ss_pred             eEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCC
Confidence            334445444445  799999999988886          3688999999999999998643       124568999999


Q ss_pred             CCEEEEEEC--CCeEEE--EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC-----Ceeee--
Q 003271          609 LSRLATSSA--DRTVRV--WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN-----GSCAG--  677 (835)
Q Consensus       609 g~~Latgs~--Dg~I~I--WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s-----~~~~~--  677 (835)
                      |++|+++..  +..|.+  +|+.+    +..+.. ...   +.+.|+++..+++.+.|+.+.+.|+.+     ++...  
T Consensus       135 Gk~lyVan~~~~~~v~V~~iD~~t----v~~i~v-~~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~  206 (368)
T 1mda_H          135 SACLLFFLFGSSAAAGLSVPGASD----DQLTKS-ASC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQC  206 (368)
T ss_dssp             SSCEEEEECSSSCEEEEEETTTEE----EEEEEC-SSC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCS
T ss_pred             CCEEEEEccCCCCeEEEEEEchhh----ceEEEC-CCc---eEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEe
Confidence            999999875  357888  88876    233321 111   223466666777777899999999987     44331  


Q ss_pred             --EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe--EEEEEcCC----------CCCeEEEEEcCCCCEEEEEe--
Q 003271          678 --VFKSGATQMRFQPRLGRILAAAIENYISILDVETQV--CRLKLQGH----------KNQVHSVCWNTSGEYLASVS--  741 (835)
Q Consensus       678 --~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~--~i~~l~~h----------~~~I~sl~fspdg~~Lasgs--  741 (835)
                        .+..+..... .++++.++..+. +.|.+.|+.+..  .+..+.-.          ......+.|+++++.++.+.  
T Consensus       207 t~~i~vg~~P~~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~  284 (368)
T 1mda_H          207 TGAQNCSSQAAQ-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVE  284 (368)
T ss_dssp             CTTSCBCSCCEE-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEE
T ss_pred             eeeeeCCCCccc-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEecc
Confidence              1111111113 777787777777 999999997542  22222110          11122268999998877643  


Q ss_pred             C--------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE-EE-cCCeEEEEEcCCCcEEEeccCCCCee
Q 003271          742 D--------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV-IG-CYETLELWNMTENKTLTLSAHDKLVS  811 (835)
Q Consensus       742 D--------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s-gs-~dg~I~IwDl~~~~~~~l~~h~~~V~  811 (835)
                      .        +.+.++|+.+.   +.+..+... .....++|+|+++++++ .. .++.|.++|+.+++.+....-.....
T Consensus       285 ~~~~~~~~~~~~~ViD~~t~---~vv~~i~vg-~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg~~P~  360 (368)
T 1mda_H          285 HSRSCLAAAENTSSVTASVG---QTSGPISNG-HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPE  360 (368)
T ss_dssp             CSSCTTSCEEEEEEEESSSC---CEEECCEEE-EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCC
T ss_pred             ccCcccccCCCEEEEECCCC---eEEEEEECC-CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECCCCCC
Confidence            2        36779999998   555555433 26889999999985544 44 48999999999999996655556667


Q ss_pred             EEEEeC
Q 003271          812 SLAAST  817 (835)
Q Consensus       812 ~la~sp  817 (835)
                      .+++.+
T Consensus       361 ~i~~~~  366 (368)
T 1mda_H          361 SLSVQN  366 (368)
T ss_dssp             EEECCC
T ss_pred             EEEeec
Confidence            777654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.34  E-value=2.2e-11  Score=135.54  Aligned_cols=172  Identities=14%  Similarity=0.128  Sum_probs=138.9

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-----------EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----------VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----------~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      .++.+++++...+|++|+.+ .++||++++..           ....+ .+.. |+.|+|  |+++|+++ .++.|++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            58999999999999999987 56669865332           11222 3566 999999  89999999 889999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEE
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYIS  705 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~  705 (835)
                      +.+... ......|...|.++.+.+.  . +++++.||.|.+||+.++.... +...+++++|+|+|  ++++..||.++
T Consensus       113 v~sl~~-~~~~~~~~~~v~~i~~~~p--~-~av~~~dG~L~v~dl~~~~~~~-~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          113 LEELSE-FRTVTSFEKPVFQLKNVNN--T-LVILNSVNDLSALDLRTKSTKQ-LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSSTTC-EEEEEECSSCEEEEEECSS--E-EEEEETTSEEEEEETTTCCEEE-EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             chhhhc-cCccceeecceeeEEecCC--C-EEEEECCCCEEEEEccCCcccc-ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            987663 4556667788988887765  2 6678889999999999877654 56789999999998  78899999999


Q ss_pred             EEECCCCeE--EEEE------c---CCCCCeEEEEEcCCCCEEEEEe
Q 003271          706 ILDVETQVC--RLKL------Q---GHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       706 IwDl~t~~~--i~~l------~---~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      +|+......  ...+      .   +|...|.+|+|.+++.++++-.
T Consensus       186 ~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          186 SFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            999988775  5556      3   3788999999999999998754

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.33  E-value=1.6e-09  Score=119.52  Aligned_cols=253  Identities=13%  Similarity=0.068  Sum_probs=165.4

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCe--
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV--  643 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V--  643 (835)
                      ++..|++++.++.|..+|.++++.+..+.............  +..+++++.++.|..+|..+++. +..+.......  
T Consensus       102 ~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~-~W~~~~~~~~~~~  178 (376)
T 3q7m_A          102 SGGHVYIGSEKAQVYALNTSDGTVAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAV-KWTVNLDMPSLSL  178 (376)
T ss_dssp             ETTEEEEEETTSEEEEEETTTCCEEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCE-EEEEECCC-----
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcE-EEEEeCCCCceee
Confidence            34577888899999999999999887765443322222222  45788888999999999998875 33332221110  


Q ss_pred             ---EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce-------E---EEEe--cCCCEEEEEEcCCcEEEEE
Q 003271          644 ---MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT-------Q---MRFQ--PRLGRILAAAIENYISILD  708 (835)
Q Consensus       644 ---~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~-------~---l~fs--p~~~~ll~~s~dg~I~IwD  708 (835)
                         ...... + . .++.+..++.|..+|..+++.+........       .   +...  ..++.+++++.++.|..+|
T Consensus       179 ~~~~~~~~~-~-~-~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d  255 (376)
T 3q7m_A          179 RGESAPTTA-F-G-AAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALD  255 (376)
T ss_dssp             CCCCCCEEE-T-T-EEEECCTTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEE
T ss_pred             cCCCCcEEE-C-C-EEEEEcCCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEE
Confidence               122222 2 3 455677899999999999988776653210       0   0011  1357888888899999999


Q ss_pred             CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec-CCCceEEEEEeCCCCEEEEEEc
Q 003271          709 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC-TGNKFHSCVFHPTFPSLLVIGC  786 (835)
Q Consensus       709 l~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~-~~~~V~sv~fspdg~~L~sgs~  786 (835)
                      .++++.+.....  ....++...  +..|+.++ ++.|..+|..++   +.+..... ....+.....  .+..|++++.
T Consensus       256 ~~tG~~~w~~~~--~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG---~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~  326 (376)
T 3q7m_A          256 LRSGQIMWKREL--GSVNDFIVD--GNRIYLVDQNDRVMALTIDGG---VTLWTQSDLLHRLLTSPVL--YNGNLVVGDS  326 (376)
T ss_dssp             TTTCCEEEEECC--CCEEEEEEE--TTEEEEEETTCCEEEEETTTC---CEEEEECTTTTSCCCCCEE--ETTEEEEECT
T ss_pred             CCCCcEEeeccC--CCCCCceEE--CCEEEEEcCCCeEEEEECCCC---cEEEeecccCCCcccCCEE--ECCEEEEEeC
Confidence            999998877652  334444443  44555555 889999999988   44444431 1222233333  2457999999


Q ss_pred             CCeEEEEEcCCCcEE-EeccCCCCeeE-EEEeCCCCEEEEEECCCcEEEeC
Q 003271          787 YETLELWNMTENKTL-TLSAHDKLVSS-LAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       787 dg~I~IwDl~~~~~~-~l~~h~~~V~~-la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|.|++||..+++.+ ........+.. ....  +..|+.++.||.|+.||
T Consensus       327 ~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~~--~~~l~v~~~~G~l~~~~  375 (376)
T 3q7m_A          327 EGYLHWINVEDGRFVAQQKVDSSGFQTEPVAA--DGKLLIQAKDGTVYSIT  375 (376)
T ss_dssp             TSEEEEEETTTCCEEEEEECCTTCBCSCCEEE--TTEEEEEBTTSCEEEEE
T ss_pred             CCeEEEEECCCCcEEEEEecCCCcceeCCEEE--CCEEEEEeCCCEEEEEe
Confidence            999999999999987 33332333332 2332  45788889999999885

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=2e-10  Score=123.38  Aligned_cols=232  Identities=6%  Similarity=0.006  Sum_probs=157.3

Q ss_pred             EEeccCCCCeEEEEECCCCC-EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEE
Q 003271          591 STLEEHTQWITDVRFSPSLS-RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS  669 (835)
Q Consensus       591 ~~l~~h~~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwD  669 (835)
                      ..+..+........|+++++ ++++...++.|..|+.. +.  ...+..+...+..++++++|+ ++++...++.|.+|+
T Consensus        38 ~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g~--~~~~~~~~~~~~gl~~d~dG~-l~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           38 LTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-GT--VDVLLDATAFTNGNAVDAQQR-LVHCEHGRRAITRSD  113 (305)
T ss_dssp             EEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-SC--EEEEEESCSCEEEEEECTTSC-EEEEETTTTEEEEEC
T ss_pred             EEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-CC--EEEEeCCCCccceeeECCCCC-EEEEECCCCEEEEEC
Confidence            33444556678899999998 56666678899999984 43  445555667899999999987 555555567899999


Q ss_pred             CCCCeeeeEee-------cCceEEEEecCCCEEEE----EEc-------------CCcEEEEECCCCeEEEEEcCCCCCe
Q 003271          670 INNGSCAGVFK-------SGATQMRFQPRLGRILA----AAI-------------ENYISILDVETQVCRLKLQGHKNQV  725 (835)
Q Consensus       670 l~s~~~~~~~~-------~~i~~l~fsp~~~~ll~----~s~-------------dg~I~IwDl~t~~~i~~l~~h~~~I  725 (835)
                      .. ++......       ..+..+++++++..+++    +..             .+.|+.||..+++.....  .....
T Consensus       114 ~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~~p  190 (305)
T 3dr2_A          114 AD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLDHP  190 (305)
T ss_dssp             TT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EESSE
T ss_pred             CC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCCCC
Confidence            86 54332211       12567999999887765    221             256888888766544333  33467


Q ss_pred             EEEEEcCCCCEEEEEe-C------CeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          726 HSVCWNTSGEYLASVS-D------ELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       726 ~sl~fspdg~~Lasgs-D------g~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      ..++|+|+++.|+.+. .      +.|++|++.... ......+ ......+..++++++|+ |++++. +.|.+|+...
T Consensus       191 ~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~-l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~-~gv~~~~~~g  267 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGA-LHDRRHFASVPDGLPDGFCVDRGGW-LWSSSG-TGVCVFDSDG  267 (305)
T ss_dssp             EEEEECTTSSEEEEEECCC---CCCEEEEEEEETTE-EEEEEEEECCSSSCCCSEEECTTSC-EEECCS-SEEEEECTTS
T ss_pred             cceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCC-ccCCeEEEECCCCCCCeEEECCCCC-EEEecC-CcEEEECCCC
Confidence            8899999999877766 4      689999987642 1111111 11234456789999998 555554 4599999854


Q ss_pred             CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .....+..+. .+.+++|+++++.|+.++.++..++
T Consensus       268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~l~~~  302 (305)
T 3dr2_A          268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPCLWML  302 (305)
T ss_dssp             CEEEEEECSS-CCCEEEECTTSCEEEEEETTEEEEE
T ss_pred             CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCeEEEE
Confidence            4333444443 6899999999988888887765554

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.33  E-value=2.6e-10  Score=122.46  Aligned_cols=232  Identities=11%  Similarity=0.119  Sum_probs=159.3

Q ss_pred             EecCCCCCEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCC
Q 003271          550 LIPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTEN  628 (835)
Q Consensus       550 ~l~gH~~~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t  628 (835)
                      .+..+.....+.+|+++|+ +++++..++.|..|+. +++ ...+..+...+..++++++|+++++...++.|.+|+.+ 
T Consensus        39 ~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-  115 (305)
T 3dr2_A           39 TLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-  115 (305)
T ss_dssp             EEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EEEEEESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             EEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EEEEeCCCCccceeeECCCCCEEEEECCCCEEEEECCC-
Confidence            3445556678999999998 5677777899999998 444 34455566789999999999876665566889999986 


Q ss_pred             CCceeEEeecC-----CCCeEEEEEcCCCCcEEEE----EeC-------------CCcEEEEECCCCeeeeEee-cCceE
Q 003271          629 PDYSLRTFTGH-----STTVMSLDFHPSKEDLLCS----CDN-------------NSEIRYWSINNGSCAGVFK-SGATQ  685 (835)
Q Consensus       629 ~~~~~~~~~~h-----~~~V~sl~fsp~g~~ll~s----gs~-------------Dg~I~iwDl~s~~~~~~~~-~~i~~  685 (835)
                      +..  ..+..+     ...+.+++++++|. ++++    |..             .+.|+.||..+++...... .....
T Consensus       116 g~~--~~~~~~~~~~~~~~~~~i~~d~dG~-l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~p~g  192 (305)
T 3dr2_A          116 GQA--HLLVGRYAGKRLNSPNDLIVARDGA-IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMADLDHPNG  192 (305)
T ss_dssp             SCE--EEEECEETTEECSCCCCEEECTTSC-EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEEEESSEEE
T ss_pred             CCE--EEEEeccCCCccCCCCCEEECCCCC-EEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEecCCCCcc
Confidence            442  222211     13467899999986 5554    221             3568888887665443322 23567


Q ss_pred             EEEecCCCEEEEEEcC------CcEEEEECCCCeEE--EEE-cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCc
Q 003271          686 MRFQPRLGRILAAAIE------NYISILDVETQVCR--LKL-QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG  756 (835)
Q Consensus       686 l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i--~~l-~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~  756 (835)
                      ++|+|+++.++++...      +.|++||+......  ..+ .........++++++|++.++. .+.|.+|+.. +   
T Consensus       193 l~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~gv~~~~~~-g---  267 (305)
T 3dr2_A          193 LAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GTGVCVFDSD-G---  267 (305)
T ss_dssp             EEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SSEEEEECTT-S---
T ss_pred             eEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CCcEEEECCC-C---
Confidence            8999999988888775      68999998765311  111 1123445678999999965554 4459999974 3   


Q ss_pred             ceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       757 ~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      +.+..+.... .+.+++|.++++.|++++.++ |+.++
T Consensus       268 ~~~~~~~~~~-~~~~~~f~~d~~~L~it~~~~-l~~~~  303 (305)
T 3dr2_A          268 QLLGHIPTPG-TASNCTFDQAQQRLFITGGPC-LWMLP  303 (305)
T ss_dssp             CEEEEEECSS-CCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred             CEEEEEECCC-ceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence            4555555444 588999999999899888764 44444

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.32  E-value=1.9e-09  Score=117.20  Aligned_cols=219  Identities=9%  Similarity=0.005  Sum_probs=148.6

Q ss_pred             CeEEEEECCCC-CEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271          599 WITDVRFSPSL-SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (835)
Q Consensus       599 ~V~sv~fspdg-~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~  677 (835)
                      ...+++|++++ .++++...++.|.+||..++..  ..+. ....+.+++|+++++ +++++  +..|++||..+++...
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~--~~~~-~~~~v~~i~~~~dg~-l~v~~--~~gl~~~d~~~g~~~~  123 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRK--TVHA-LPFMGSALAKISDSK-QLIAS--DDGLFLRDTATGVLTL  123 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEEE-CSSCEEEEEEEETTE-EEEEE--TTEEEEEETTTCCEEE
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcE--EEEE-CCCcceEEEEeCCCe-EEEEE--CCCEEEEECCCCcEEE
Confidence            35678899974 4566666788999999987643  2332 346799999999976 44443  3459999998887543


Q ss_pred             Eee-------cCceEEEEecCCCEEEEEEc------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C
Q 003271          678 VFK-------SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D  742 (835)
Q Consensus       678 ~~~-------~~i~~l~fsp~~~~ll~~s~------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D  742 (835)
                      ...       ..+..+++++++..+++...      .+.|+.+|  +++.... ..+......++|+++++.|+.+.  +
T Consensus       124 ~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~-~~~~~~~~~i~~s~dg~~lyv~~~~~  200 (326)
T 2ghs_A          124 HAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKL-FADISIPNSICFSPDGTTGYFVDTKV  200 (326)
T ss_dssp             EECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEE-EEEESSEEEEEECTTSCEEEEEETTT
T ss_pred             EeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEe-eCCCcccCCeEEcCCCCEEEEEECCC
Confidence            322       12678899999886554432      25677777  4544332 22334577899999998776665  6


Q ss_pred             CeEEEEEcC--CC-CC--cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEe
Q 003271          743 ELVRVWSIG--SG-SK--GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS  816 (835)
Q Consensus       743 g~I~IwDl~--t~-~~--~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~s  816 (835)
                      +.|.+||+.  ++ ..  ...+..+......+..++++++|.++++...++.|.+||.. ++.+ .+..+...+++++|+
T Consensus       201 ~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~-g~~~~~i~~~~~~~~~~af~  279 (326)
T 2ghs_A          201 NRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD-GNHIARYEVPGKQTTCPAFI  279 (326)
T ss_dssp             CEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECTT-CCEEEEEECSCSBEEEEEEE
T ss_pred             CEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC-CCEEEEEECCCCCcEEEEEe
Confidence            799999986  43 21  12233333344567889999999866666667899999984 5544 555566679999998


Q ss_pred             -CCCCEEEEEEC
Q 003271          817 -TVNGMVASASH  827 (835)
Q Consensus       817 -pdg~~LaSgs~  827 (835)
                       ++++.|+.++.
T Consensus       280 g~d~~~L~vt~~  291 (326)
T 2ghs_A          280 GPDASRLLVTSA  291 (326)
T ss_dssp             STTSCEEEEEEB
T ss_pred             cCCCCEEEEEec
Confidence             88876655443

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.25  E-value=1.3e-10  Score=128.66  Aligned_cols=246  Identities=11%  Similarity=0.007  Sum_probs=164.3

Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEEEEecCCCCceeEEeecC-------C
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVRVWDTENPDYSLRTFTGH-------S  640 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~IWDl~t~~~~~~~~~~h-------~  640 (835)
                      +|.++|..+++.+.++.....+  .+.|+||+++++++.          .++.|.+||+.+.+. +..+...       .
T Consensus        47 ~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~v-v~~I~v~~~~~~~~g  123 (368)
T 1mda_H           47 ENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLP-IADIELPDAPRFSVG  123 (368)
T ss_dssp             EEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCE-EEEEEETTSCSCCBS
T ss_pred             eEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCE-EEEEECCCccccccC
Confidence            8899999999999999766666  799999999999886          368999999999875 4554322       1


Q ss_pred             CCeEEEEEcCCCCcEEEEEeC-CCcEEE--EECCCCeeeeEeecCceEEEEecCC-CEEEEEEcCCcEEEEECCC-----
Q 003271          641 TTVMSLDFHPSKEDLLCSCDN-NSEIRY--WSINNGSCAGVFKSGATQMRFQPRL-GRILAAAIENYISILDVET-----  711 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sgs~-Dg~I~i--wDl~s~~~~~~~~~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t-----  711 (835)
                      .....+.|+|+|++++++... +..|.+  +|+.+   +..+..+- ++.+.|++ ..+++.+.|+.+.+.|+++     
T Consensus       124 ~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~-~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          124 PRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSAS-CFHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             CCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSS-CCCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             CCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCC-ceEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            346689999999988876644 467888  99877   44443221 12233444 3455566788888899987     


Q ss_pred             CeEEEE----EcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecC-------C---CceEEEEEeCC
Q 003271          712 QVCRLK----LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT-------G---NKFHSCVFHPT  777 (835)
Q Consensus       712 ~~~i~~----l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~-------~---~~V~sv~fspd  777 (835)
                      ++....    +.-...+.   .+..++.++++.. +.|.+.|+.+... ..+..+...       .   .....++++|+
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~~~~~~~~~~vs~-~~V~viD~~~~~~-~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d  274 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---QANYPGMLVWAVA-SSILQGDIPAAGA-TMKAAIDGNESGRKADNFRSAGFQMVAKLKN  274 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---EETTTTEEEECBS-SCCEEEECCSSCC-EEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred             CeEEEEeeeeeeCCCCcc---ccccCCEEEEEcC-CEEEEEECCCCcc-eEEEEEEeccccccccccccCcceeeEEcCC
Confidence            432211    11112233   3333444455555 8999999865321 122222110       0   11122689999


Q ss_pred             CCEEEEEEc---------CCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-EEEEEE-CCCcEEEeC
Q 003271          778 FPSLLVIGC---------YETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-MVASAS-HDKCVKIWK  835 (835)
Q Consensus       778 g~~L~sgs~---------dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-~LaSgs-~DG~V~IWd  835 (835)
                      ++.++++..         ++.+.+||+.+.+.+....-.....+|+|++|++ ++++.. .++.|.|+|
T Consensus       275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID  343 (368)
T 1mda_H          275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYD  343 (368)
T ss_dssp             TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEE
T ss_pred             CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEE
Confidence            999988754         2466799999999885443344689999999998 566666 589999986

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.24  E-value=2.1e-10  Score=123.35  Aligned_cols=256  Identities=10%  Similarity=0.007  Sum_probs=168.8

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      .+.++.+.++|. |++++.+  |..||. +++.+..+......+....+.  +..|++++.++.|..+|.. +.. ...+
T Consensus        61 ~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~~~~~~~~~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~-~~~~  132 (330)
T 3hxj_A           61 IECRPSIGKDGT-IYFGSDK--VYAINP-DGTEKWRFDTKKAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTE-KWRF  132 (330)
T ss_dssp             EEECCEETTTTE-ECCSSCE--EEEECC-CGGGGGGSCC-----CCEEEE--TTEEEEECTTSEEEEECTT-SCE-EEEE
T ss_pred             cccceEEecCCc-EEEecCc--EEEECC-CCcEEEEEECCCCcccCceEE--CCEEEEEecCCEEEEEcCC-CCE-EEEE
Confidence            356777777775 4445444  888886 555443333222223333333  4567788889999999988 553 4444


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      ..+...+.++...+++.  ++.++.++.|..||.. ++....+..   .+..+.+..++. +++++  +.|..|| .+++
T Consensus       133 ~~~~~~~~~~~~~~~g~--l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~  205 (330)
T 3hxj_A          133 KTKKAIYATPIVSEDGT--IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGT-IYFGS--DKVYAIN-PDGT  205 (330)
T ss_dssp             ECSSCCCSCCEECTTSC--EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCC-EEEES--SSEEEEC-TTSC
T ss_pred             cCCCceeeeeEEcCCCE--EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCE-EEEEe--CEEEEEC-CCCc
Confidence            44555567777776665  4456678999999999 776655542   255566666655 44444  8899999 7777


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          714 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       714 ~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      .+..+......+.++...++|.+.+++.++.|..+|. ++   ..+..+......+..+.+.+++ .|++++.++.|..+
T Consensus       206 ~~~~~~~~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~  280 (330)
T 3hxj_A          206 EKWNFYAGYWTVTRPAISEDGTIYVTSLDGHLYAINP-DG---TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAI  280 (330)
T ss_dssp             EEEEECCSSCCCSCCEECTTSCEEEEETTTEEEEECT-TS---CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEE
T ss_pred             EEEEEccCCcceeceEECCCCeEEEEcCCCeEEEECC-CC---CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEE
Confidence            7777766667788889988888777665888888874 33   3444444444444455665555 48888888899999


Q ss_pred             EcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          794 NMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       794 Dl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      |. +++.+ ........+.++....++. |..++.+|.|++.
T Consensus       281 d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~  320 (330)
T 3hxj_A          281 NP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYAL  320 (330)
T ss_dssp             CT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEE
T ss_pred             CC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEE
Confidence            96 56554 4444456677888877776 5558889988874

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.23  E-value=7.1e-10  Score=133.22  Aligned_cols=264  Identities=11%  Similarity=0.095  Sum_probs=175.1

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC----------e-EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~----------V-~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      +..|++++.++.|+.+|..+++.+..+..+...          + ..+.+  .+..|++++.|+.|..+|..+++.+...
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~dg~l~AlDa~TG~~~W~~  147 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVLDGRLEAIDAKTGQRAWSV  147 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEccCCEEEEEECCCCCEeeee
Confidence            457777888899999999999999887543221          1 11222  3568888999999999999998864433


Q ss_pred             eec-CCCCeEEEEEcC--CCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC-------------------------
Q 003271          636 FTG-HSTTVMSLDFHP--SKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG-------------------------  682 (835)
Q Consensus       636 ~~~-h~~~V~sl~fsp--~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~-------------------------  682 (835)
                      ... +......+...|  .+..+++.++     .++.|+.||.++++.+..+...                         
T Consensus       148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w  227 (689)
T 1yiq_A          148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAY  227 (689)
T ss_dssp             ECCSCTTSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTH
T ss_pred             cCcCCCCCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCcee
Confidence            322 211111111111  1233444332     3689999999999988766420                         


Q ss_pred             ---------ceEEEEecCCCEEEEEEcCC-------------------cEEEEECCCCeEEEEEcC--CC-------CCe
Q 003271          683 ---------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQV  725 (835)
Q Consensus       683 ---------i~~l~fsp~~~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~~I  725 (835)
                               ...++++++.+.+++++.++                   .|..+|.++++.+..+..  |.       ..+
T Consensus       228 ~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~  307 (689)
T 1yiq_A          228 VEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHM  307 (689)
T ss_dssp             HHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCE
T ss_pred             eecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCc
Confidence                     02578899999999988775                   399999999999988764  22       122


Q ss_pred             EEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-----------------------------------
Q 003271          726 HSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------------------------------  766 (835)
Q Consensus       726 ~sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-----------------------------------  766 (835)
                      .......+|+   +|+.++ +|.|+++|..+++   .+.......                                   
T Consensus       308 ~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~  384 (689)
T 1yiq_A          308 ILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE---LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPA  384 (689)
T ss_dssp             EEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSC
T ss_pred             EEEeeccCCcEEEEEEEECCCCeEEEEECCCCC---EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCC
Confidence            2222223564   677777 9999999999984   332211100                                   


Q ss_pred             ----CceEEEEEeCCCCEEEEEEc---------------------------------------------CCeEEEEEcCC
Q 003271          767 ----NKFHSCVFHPTFPSLLVIGC---------------------------------------------YETLELWNMTE  797 (835)
Q Consensus       767 ----~~V~sv~fspdg~~L~sgs~---------------------------------------------dg~I~IwDl~~  797 (835)
                          .....++|+|+...+++...                                             ++.|+.||+.+
T Consensus       385 ~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~t  464 (689)
T 1yiq_A          385 FWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVK  464 (689)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTT
T ss_pred             cccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCC
Confidence                00122688998888877632                                             36799999999


Q ss_pred             CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++.+-...+...+....+...+.+|++++.||.|+.||
T Consensus       465 G~~~W~~~~~~~~~~g~~~tagglvf~gt~dg~l~a~D  502 (689)
T 1yiq_A          465 QQAAWEVPYVTIFNGGTLSTAGNLVFEGSADGRVIAYA  502 (689)
T ss_dssp             TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCeEeEccCCCCccCccceECCCEEEEECCCCcEEEEE
Confidence            99884333334444446667788999999999999986

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=99.22  E-value=1.2e-13  Score=153.60  Aligned_cols=223  Identities=14%  Similarity=0.045  Sum_probs=121.1

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCC-CeE
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST-TVM  644 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~-~V~  644 (835)
                      ++..|++++.|+.|+.||..+++.+..+..  +.+.+..+..++..+++++.|+.|+.||..+++. +..+..+.. .+.
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~-~w~~~~~~~~~~~   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEG-LTKLPFTIPELVQ   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CC-SEECSCCHHHHHT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCce-eeeeeccCccccc
Confidence            567899999999999999999999988876  5566666667787888888999999999988764 233322211 110


Q ss_pred             -EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271          645 -SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       645 -sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~  723 (835)
                       +..+. .+. .+++++.++.|+.||..+++.+..+..+. ...++|+++.+++++.++.|+.||.++++.+..+..+. 
T Consensus        85 ~sp~~~-~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-  160 (369)
T 2hz6_A           85 ASPCRS-SDG-ILYMGKKQDIWYVIDLLTGEKQQTLSSAF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-  160 (369)
T ss_dssp             TCSCC-------CCCCEEEEEEEEECCC-----------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-
T ss_pred             cCceEe-cCC-EEEEEeCCCEEEEEECCCCcEEEEecCCC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-
Confidence             00111 222 45677789999999999999887765432 34566788899999999999999999988765554211 


Q ss_pred             CeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEE--EEcCCeEEEEEcCC
Q 003271          724 QVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV--IGCYETLELWNMTE  797 (835)
Q Consensus       724 ~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~s--gs~dg~I~IwDl~~  797 (835)
                       ....++..+.   ..+++++ |+.|+.||..++   +.+.........+....+++++...+.  ...++.++.+|..+
T Consensus       161 -~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG---~~~W~~~~~~pv~~~~~~~~dg~~~v~~~~~~~~~l~~ld~~t  236 (369)
T 2hz6_A          161 -YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESG---DVLWIQNYASPVVAFYVWQREGLRKVMHINVAVETLRYLTFMS  236 (369)
T ss_dssp             -ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTC---CEEEEEECSSCEEEEEECTTSSCEEECCEEEEHHHHHHHHHHH
T ss_pred             -ccCccccCCccccceEEEECCCCEEEEEECCCC---cEEEEecCCCceEEEEEecCCceEeccceeecccceeeeehhc
Confidence             1223333321   3344455 999999999988   555555433322333344555542110  01133556666655


Q ss_pred             Cc
Q 003271          798 NK  799 (835)
Q Consensus       798 ~~  799 (835)
                      ++
T Consensus       237 G~  238 (369)
T 2hz6_A          237 GE  238 (369)
T ss_dssp             HH
T ss_pred             CC
Confidence            54

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.21  E-value=2.4e-09  Score=128.34  Aligned_cols=261  Identities=12%  Similarity=0.075  Sum_probs=179.3

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC-----------eEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW-----------ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~-----------V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      +..|++++.++.|+.+|..+++.+.++......           ...+++  ++..|++++.|+.|..+|..+++.+ ..
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~dg~l~alD~~tG~~~-W~  153 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAWDGRLIALDAATGKEV-WH  153 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEE-EE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcCCCEEEEEECCCCCEE-ee
Confidence            446777777899999999999999887543210           112333  4568888899999999999998863 33


Q ss_pred             eecC-C----CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC----------------------
Q 003271          636 FTGH-S----TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG----------------------  682 (835)
Q Consensus       636 ~~~h-~----~~V~s-l~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~----------------------  682 (835)
                      +..+ .    ..+.+ ..+.  +..+++.++     .++.|+.||..+++.+..+...                      
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~--~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~  231 (677)
T 1kb0_A          154 QNTFEGQKGSLTITGAPRVF--KGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDP  231 (677)
T ss_dssp             EETTTTCCSSCBCCSCCEEE--TTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCG
T ss_pred             ecCCcCcCcCcccccCcEEE--CCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccc
Confidence            3332 1    11111 1111  233444333     2689999999999988766421                      


Q ss_pred             -------------ceEEEEecCCCEEEEEEcCC-------------------cEEEEECCCCeEEEEEcC--CC------
Q 003271          683 -------------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK------  722 (835)
Q Consensus       683 -------------i~~l~fsp~~~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~------  722 (835)
                                   ...++++++++.+++++.++                   .|..+|.++++.+..+..  |.      
T Consensus       232 ~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~  311 (677)
T 1kb0_A          232 SGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTS  311 (677)
T ss_dssp             GGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCC
T ss_pred             cCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCccccccc
Confidence                         02468899999999887654                   499999999999988764  21      


Q ss_pred             -CCeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-----------Cce-----------------
Q 003271          723 -NQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------NKF-----------------  769 (835)
Q Consensus       723 -~~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-----------~~V-----------------  769 (835)
                       .....+....+|   ..|+.++ +|.|+++|..++   +.+..+....           ..+                 
T Consensus       312 ~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG---~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~  388 (677)
T 1kb0_A          312 TQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG---KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG  388 (677)
T ss_dssp             CSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC---CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred             CCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC---CEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence             122233333477   5777777 999999999998   4444332111           111                 


Q ss_pred             -------EEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEEcCCCc
Q 003271          770 -------HSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTENK  799 (835)
Q Consensus       770 -------~sv~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~~~~  799 (835)
                             ..++|+|+...+++...+                                           +.|..||+.+++
T Consensus       389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~  468 (677)
T 1kb0_A          389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQK  468 (677)
T ss_dssp             TTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTE
T ss_pred             cccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCc
Confidence                   146889998888876542                                           689999999999


Q ss_pred             EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          800 TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       800 ~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+-...+...+....+..++.+++.++.||.|++||
T Consensus       469 ~~W~~~~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D  504 (677)
T 1kb0_A          469 AAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (677)
T ss_dssp             EEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             EEeecCCCCCCcCcceEeCCCEEEEECCCCcEEEEE
Confidence            884444555666666777888999999999999986

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.19  E-value=6.4e-09  Score=114.70  Aligned_cols=252  Identities=8%  Similarity=0.044  Sum_probs=163.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccC---------CCCeEE-EEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEH---------TQWITD-VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h---------~~~V~s-v~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      +..|++++.++.|..||.++++.+..+...         ...+.+ +..  ++..|++++.++.|..+|..+++.. ..+
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~~g~l~a~d~~tG~~~-W~~  129 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV--SGGHVYIGSEKAQVYALNTSDGTVA-WQT  129 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE--ETTEEEEEETTSEEEEEETTTCCEE-EEE
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE--eCCEEEEEcCCCEEEEEECCCCCEE-EEE
Confidence            557788888999999999999988766542         122322 222  4567888899999999999988753 333


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc--------eEEEEecCCCEEEEEEcCCcEEEEE
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA--------TQMRFQPRLGRILAAAIENYISILD  708 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i--------~~l~fsp~~~~ll~~s~dg~I~IwD  708 (835)
                      ...........+. + . .++.++.++.|..+|..+++.+..+....        ....+.  ++.+++++.++.|..+|
T Consensus       130 ~~~~~~~~~p~~~-~-~-~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d  204 (376)
T 3q7m_A          130 KVAGEALSRPVVS-D-G-LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVL  204 (376)
T ss_dssp             ECSSCCCSCCEEE-T-T-EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEE
T ss_pred             eCCCceEcCCEEE-C-C-EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEE
Confidence            3222222222222 2 3 55577789999999999999887665431        112222  56788888899999999


Q ss_pred             CCCCeEEEEEcCCCCC----eEE---EEEcC--CCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCC
Q 003271          709 VETQVCRLKLQGHKNQ----VHS---VCWNT--SGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTF  778 (835)
Q Consensus       709 l~t~~~i~~l~~h~~~----I~s---l~fsp--dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg  778 (835)
                      ..+++.+.........    +..   +...|  .+..++.++ ++.|..+|..++   +.+....  ......+..  ++
T Consensus       205 ~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG---~~~w~~~--~~~~~~~~~--~~  277 (376)
T 3q7m_A          205 MEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSG---QIMWKRE--LGSVNDFIV--DG  277 (376)
T ss_dssp             TTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTC---CEEEEEC--CCCEEEEEE--ET
T ss_pred             CCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCC---cEEeecc--CCCCCCceE--EC
Confidence            9999988776532110    000   00111  234566666 899999999988   4444433  223444444  35


Q ss_pred             CEEEEEEcCCeEEEEEcCCCcEEE-ec-cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          779 PSLLVIGCYETLELWNMTENKTLT-LS-AHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       779 ~~L~sgs~dg~I~IwDl~~~~~~~-l~-~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..|++++.++.|..+|..+++.+. .. .....+....+.  +..|+.++.+|.|++||
T Consensus       278 ~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~--~~~l~v~~~~g~l~~~d  334 (376)
T 3q7m_A          278 NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSPVLY--NGNLVVGDSEGYLHWIN  334 (376)
T ss_dssp             TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCCEEE--TTEEEEECTTSEEEEEE
T ss_pred             CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCCEEE--CCEEEEEeCCCeEEEEE
Confidence            678999999999999999999873 32 122233333433  46788888888888875

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.18  E-value=3.9e-09  Score=126.54  Aligned_cols=252  Identities=10%  Similarity=0.051  Sum_probs=168.2

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccC-C----CCeEE-EEECCCCCEEEEEEC------CCeEEEEecCCCCcee
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEH-T----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSL  633 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-~----~~V~s-v~fspdg~~Latgs~------Dg~I~IWDl~t~~~~~  633 (835)
                      ++..|++++.|+.|..+|..+++.+..+..+ .    ..+.+ ..+  .+..+++++.      ++.|+.||..+++...
T Consensus       127 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W  204 (677)
T 1kb0_A          127 WKGKVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKW  204 (677)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEE
Confidence            3567888899999999999999999887654 1    11211 111  1345555543      7999999999988643


Q ss_pred             EEeecCC-------------------------------CCeEEEEEcCCCCcEEEEEeCCC-------------------
Q 003271          634 RTFTGHS-------------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------  663 (835)
Q Consensus       634 ~~~~~h~-------------------------------~~V~sl~fsp~g~~ll~sgs~Dg-------------------  663 (835)
                      +......                               .....+++++++..+ +.+..++                   
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~v-y~~~~~~~~w~~~~~~~~~gd~~~~~  283 (677)
T 1kb0_A          205 RWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTM-YVGTGNGSPWSHKVRSPKGGDNLYLA  283 (677)
T ss_dssp             EEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEE-EEECCCEESSCHHHHSTTCCCCTTTT
T ss_pred             EeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEE-EEECCCCccccCCCCCccCCCCeeeE
Confidence            3322111                               111357788887644 4554443                   


Q ss_pred             cEEEEECCCCeeeeEeecC------------ceEEEEecCC---CEEEEEEcCCcEEEEECCCCeEEEEEcCCC------
Q 003271          664 EIRYWSINNGSCAGVFKSG------------ATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHK------  722 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~~------------i~~l~fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------  722 (835)
                      .|..+|.++++.+..+...            ...+....++   ..+++++.+|.|+++|.++++.+..+....      
T Consensus       284 sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~  363 (677)
T 1kb0_A          284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (677)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             EEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccc
Confidence            5999999999988776531            1122233356   578888899999999999999887664221      


Q ss_pred             -----CCe------------------------EEEEEcCCCCEEEEEe-C------------------------------
Q 003271          723 -----NQV------------------------HSVCWNTSGEYLASVS-D------------------------------  742 (835)
Q Consensus       723 -----~~I------------------------~sl~fspdg~~Lasgs-D------------------------------  742 (835)
                           ..+                        ..++|+|++.++++.. +                              
T Consensus       364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g  443 (677)
T 1kb0_A          364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTA  443 (677)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCC
T ss_pred             cCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccccccccccccccccccc
Confidence                 011                        1467889888877653 2                              


Q ss_pred             -------------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eec-cCC
Q 003271          743 -------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHD  807 (835)
Q Consensus       743 -------------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-~h~  807 (835)
                                   +.|..||+.++   +.+-.+.. ...+....+...+..+++++.++.|++||..+++++ .+. .+.
T Consensus       444 ~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~-~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~  519 (677)
T 1kb0_A          444 KFFNAEPPKSKPFGRLLAWDPVAQ---KAAWSVEH-VSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTG  519 (677)
T ss_dssp             EEECSSCCCSCCEEEEEEEETTTT---EEEEEEEE-SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC
T ss_pred             cccccccCCCCCccEEEEEeCCCC---cEEeecCC-CCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCC
Confidence                         67999999988   55555443 334455566777888999999999999999999988 333 333


Q ss_pred             CCeeEEEEeCCCCEEEE
Q 003271          808 KLVSSLAASTVNGMVAS  824 (835)
Q Consensus       808 ~~V~~la~spdg~~LaS  824 (835)
                      ....-+.|..+|+.++.
T Consensus       520 ~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          520 VVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             CCSCCEEEEETTEEEEE
T ss_pred             cccCCEEEEeCCEEEEE
Confidence            33345666778874443

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.18  E-value=5.7e-09  Score=125.32  Aligned_cols=253  Identities=11%  Similarity=0.064  Sum_probs=164.2

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccC--CCCeEEEEECC---CCCEEEEEE------CCCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP---SLSRLATSS------ADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h--~~~V~sv~fsp---dg~~Latgs------~Dg~I~IWDl~t~~~~~~~  635 (835)
                      +..|++++.|+.|+.+|.++++.+..+...  ......+..+|   ++ .+++++      .++.|+.||..+++...+.
T Consensus       121 ~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  199 (689)
T 1yiq_A          121 KGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRF  199 (689)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEe
Confidence            457888889999999999999998776542  11111111122   44 444443      3789999999998864333


Q ss_pred             eecC------------------------------CCCeEEEEEcCCCCcEEEEEeCCC-------------------cEE
Q 003271          636 FTGH------------------------------STTVMSLDFHPSKEDLLCSCDNNS-------------------EIR  666 (835)
Q Consensus       636 ~~~h------------------------------~~~V~sl~fsp~g~~ll~sgs~Dg-------------------~I~  666 (835)
                      ....                              ......++++|++. +++.+..++                   .|.
T Consensus       200 ~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          200 YTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELN-LLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             ESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             cccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            2110                              01112577888765 555666565                   399


Q ss_pred             EEECCCCeeeeEeecC------------ceEEEEecCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCC-CC------
Q 003271          667 YWSINNGSCAGVFKSG------------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK-NQ------  724 (835)
Q Consensus       667 iwDl~s~~~~~~~~~~------------i~~l~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~------  724 (835)
                      .||.++++.+..+...            .....+..++.   .+++++.+|.++++|.++++.+....... ..      
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~  358 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDM  358 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEET
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccccccccccccCc
Confidence            9999999998776531            11111222443   67788889999999999999875432111 00      


Q ss_pred             --------------------------------eEEEEEcCCCCEEEEEe-------------------------------
Q 003271          725 --------------------------------VHSVCWNTSGEYLASVS-------------------------------  741 (835)
Q Consensus       725 --------------------------------I~sl~fspdg~~Lasgs-------------------------------  741 (835)
                                                      -..++|+|+..++++..                               
T Consensus       359 ~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  438 (689)
T 1yiq_A          359 KTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGM  438 (689)
T ss_dssp             TTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECC
T ss_pred             cCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeeccccccccccccccccCccccc
Confidence                                            11267888877777652                               


Q ss_pred             ---------------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eec-
Q 003271          742 ---------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-  804 (835)
Q Consensus       742 ---------------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-  804 (835)
                                     +|.|+.||+.++   +.+-.+..+. .+....+...+..+++++.|+.|+.||.++++.+ .+. 
T Consensus       439 ~p~~~~~~~~~~~~~~g~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~  514 (689)
T 1yiq_A          439 MPEGAEGLLEMAKSWSGKLIAWDPVKQ---QAAWEVPYVT-IFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPA  514 (689)
T ss_dssp             CCSSHHHHHHHHTTCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             cCcccccCCCCCCCcceeEEEEECCCC---CeEeEccCCC-CccCccceECCCEEEEECCCCcEEEEECCCCccceeeeC
Confidence                           267999999998   5555554433 2333456667788999999999999999999988 443 


Q ss_pred             cCCCCeeEEEEeCCCC-EEEEE
Q 003271          805 AHDKLVSSLAASTVNG-MVASA  825 (835)
Q Consensus       805 ~h~~~V~~la~spdg~-~LaSg  825 (835)
                      .+.....-+.|..+|+ ++++.
T Consensus       515 ~~~~~~~p~ty~~~G~qyv~~~  536 (689)
T 1yiq_A          515 ASGVMAAPVTYSVDGEQYVTFM  536 (689)
T ss_dssp             SSCCCSCCEEEEETTEEEEEEE
T ss_pred             CCCcccCceEEEECCEEEEEEE
Confidence            2322234567778887 44443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.17  E-value=9.7e-10  Score=132.21  Aligned_cols=234  Identities=12%  Similarity=0.084  Sum_probs=156.1

Q ss_pred             cCCCCeEEEEECCCCCEEEEEE-----CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-------
Q 003271          595 EHTQWITDVRFSPSLSRLATSS-----ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------  662 (835)
Q Consensus       595 ~h~~~V~sv~fspdg~~Latgs-----~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-------  662 (835)
                      +|...+..++|+|||++||.+.     .+..|+|||+.+++.....+..  .....++|+ |++.++++...+       
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~--~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~  202 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKD--VKFSGISWL-GNEGFFYSSYDKPDGSELS  202 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEE--EESCCCEEE-TTTEEEEEESSCCC-----
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCC--ceeccEEEe-CCCEEEEEEecCccccccc
Confidence            4556788999999999888543     2357999999998743222221  113567899 988777665432       


Q ss_pred             -----CcEEEEECCCCee----eeEeec----CceEEEEecCCCEEEEEEcC----CcEEEEECCCCe-EEEEEcCCCCC
Q 003271          663 -----SEIRYWSINNGSC----AGVFKS----GATQMRFQPRLGRILAAAIE----NYISILDVETQV-CRLKLQGHKNQ  724 (835)
Q Consensus       663 -----g~I~iwDl~s~~~----~~~~~~----~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~-~i~~l~~h~~~  724 (835)
                           ..|++|++.+...    +.....    ....+.|+|++.+|++....    +.|+++|+.++. ....+..+...
T Consensus       203 ~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~  282 (693)
T 3iuj_A          203 ARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDA  282 (693)
T ss_dssp             --CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSS
T ss_pred             ccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCc
Confidence                 3499999987642    322222    24678899999998776542    489999998763 34445556666


Q ss_pred             eEEEEEcCCCCEEEEEe--C---CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcC
Q 003271          725 VHSVCWNTSGEYLASVS--D---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMT  796 (835)
Q Consensus       725 I~sl~fspdg~~Lasgs--D---g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~  796 (835)
                      .... |+++|..|+..+  +   +.|.++|+.++.. .....+..+...+.  .|++++.+|++...++   .|++||+.
T Consensus       283 ~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~-~~~~~l~~~~~~~~--~~s~~g~~lv~~~~~~g~~~l~~~d~~  358 (693)
T 3iuj_A          283 DVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGP-AHWRDLIPERQQVL--TVHSGSGYLFAEYMVDATARVEQFDYE  358 (693)
T ss_dssp             CEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCG-GGCEEEECCCSSCE--EEEEETTEEEEEEEETTEEEEEEECTT
T ss_pred             eEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCc-cccEEEecCCCCEE--EEEEECCEEEEEEEECCeeEEEEEECC
Confidence            6555 566666555544  3   4899999987632 12334555555554  8899999888777654   79999998


Q ss_pred             CCcEEEec-cCCCCeeEEEEeCCCCEEEEEECC----CcEEEeC
Q 003271          797 ENKTLTLS-AHDKLVSSLAASTVNGMVASASHD----KCVKIWK  835 (835)
Q Consensus       797 ~~~~~~l~-~h~~~V~~la~spdg~~LaSgs~D----G~V~IWd  835 (835)
                      ++....+. .+.+.+..+.++++++.|+....+    +.|+.||
T Consensus       359 g~~~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d  402 (693)
T 3iuj_A          359 GKRVREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFE  402 (693)
T ss_dssp             SCEEEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEEC
T ss_pred             CCeeEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEE
Confidence            76655443 345667788888888765554443    6677765

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.15  E-value=6.8e-08  Score=101.30  Aligned_cols=245  Identities=9%  Similarity=0.005  Sum_probs=160.4

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeE-----EEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCC
Q 003271          568 KLLATGGHDKKAVLWCTESFTV-----KSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST  641 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~-----i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~  641 (835)
                      .+|+.+.. +.|+.++++....     ...+......+.+++|++++..|+.+. .++.|.++++..... .........
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~-~~~~~~~~~   79 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG   79 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCc-EEEEECCCC
Confidence            45555543 4788888875432     111222234578999999766655554 568999999986542 223322335


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEE
Q 003271          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR  715 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i  715 (835)
                      ....+++++++..++++....+.|.++++..........   .....++++|+++.++++...   +.|..+++......
T Consensus        80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~~  159 (267)
T 1npe_A           80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (267)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCcE
Confidence            688999999877788777778899999987543222222   246789999988888877753   68888888643322


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003271          716 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL  792 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~I  792 (835)
                      ............+++++++..|+.+.  .+.|.++|+...   .....+. .......+++.  +..|+++.. .+.|.+
T Consensus       160 ~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~---~~~~~~~-~~~~P~gi~~d--~~~lyva~~~~~~v~~  233 (267)
T 1npe_A          160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLE-GLQYPFAVTSY--GKNLYYTDWKTNSVIA  233 (267)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEE-CCCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             EEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCC---ceEEEec-CCCCceEEEEe--CCEEEEEECCCCeEEE
Confidence            22222335678999999887777666  679999998753   2222222 23445566654  556777665 469999


Q ss_pred             EEcCCCcEEEe-ccCC-CCeeEEEEeCCCC
Q 003271          793 WNMTENKTLTL-SAHD-KLVSSLAASTVNG  820 (835)
Q Consensus       793 wDl~~~~~~~l-~~h~-~~V~~la~spdg~  820 (835)
                      +|..+++.+.. .... .....|++.|++.
T Consensus       234 ~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~  263 (267)
T 1npe_A          234 MDLAISKEMDTFHPHKQTRLYGITIALSQC  263 (267)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred             EeCCCCCceEEEccccccccceeeecCccC
Confidence            99999987743 3222 2578888888764

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.14  E-value=6.1e-10  Score=123.90  Aligned_cols=168  Identities=11%  Similarity=0.071  Sum_probs=129.0

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe-------------eeeEeecCceEEEEecCCCEEEEEEcCCcEEEEE
Q 003271          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS-------------CAGVFKSGATQMRFQPRLGRILAAAIENYISILD  708 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~-------------~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwD  708 (835)
                      .+..+++++... ++++|+.+ .+++|++....             ....+.. +..++|  ++..++++ .++.|++||
T Consensus        39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            688999999866 66677766 56669865332             2233445 899999  88888888 889999999


Q ss_pred             CCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          709 VETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       709 l~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      +.+.........|...+.++.+.+..  +++++ ||.|.+||+.++.   ...    +...|.+++|+|+|  +++|..|
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~---~~~----~~~~Vs~v~WSpkG--~~vg~~d  181 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKS---TKQ----LAQNVTSFDVTNSQ--LAVLLKD  181 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCC---EEE----EEESEEEEEECSSE--EEEEETT
T ss_pred             chhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCc---ccc----ccCCceEEEEcCCc--eEEEEcC
Confidence            98766555566677888888877653  55555 9999999998763   222    34589999999999  7889999


Q ss_pred             CeEEEEEcCCCcE--E-Ee------c---cCCCCeeEEEEeCCCCEEEEEE
Q 003271          788 ETLELWNMTENKT--L-TL------S---AHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       788 g~I~IwDl~~~~~--~-~l------~---~h~~~V~~la~spdg~~LaSgs  826 (835)
                      |+|++|+.....+  . ++      .   +|...|.+|.|.+++.++++-+
T Consensus       182 g~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          182 RSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             SCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            9999999888774  2 33      2   3788999999999998887643

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.10  E-value=2.5e-08  Score=111.64  Aligned_cols=221  Identities=12%  Similarity=0.095  Sum_probs=154.4

Q ss_pred             EEe--CCCCEEEE-EeCCCeEEEEEcCCC----eEEEEec------c-CCCCeEEEEECCCCCEEEEEECC------CeE
Q 003271          562 HFS--PDGKLLAT-GGHDKKAVLWCTESF----TVKSTLE------E-HTQWITDVRFSPSLSRLATSSAD------RTV  621 (835)
Q Consensus       562 ~fS--pdg~~Las-gs~Dg~I~VWd~~t~----~~i~~l~------~-h~~~V~sv~fspdg~~Latgs~D------g~I  621 (835)
                      .++  .++++|++ +..++.|+|+|+.+.    +.+++++      . ....-..+...|++ +++++..+      +.|
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v  166 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI  166 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence            346  78887665 556789999999765    7777773      1 11245667888999 77776655      789


Q ss_pred             EEEecCCCCceeEEeecC--C-CCeEEEEEcCCCCcEEEEEe-------------------CCCcEEEEECCCCeeeeEe
Q 003271          622 RVWDTENPDYSLRTFTGH--S-TTVMSLDFHPSKEDLLCSCD-------------------NNSEIRYWSINNGSCAGVF  679 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h--~-~~V~sl~fsp~g~~ll~sgs-------------------~Dg~I~iwDl~s~~~~~~~  679 (835)
                      .++|..+.+. +..+...  . ..-+.+-|+|+++ ++++..                   .+.+|.+||+.+++.+..+
T Consensus       167 ~vlD~~T~~v-~~~~~~~~~~~~~~Yd~~~~p~~~-~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI  244 (462)
T 2ece_A          167 LMLDHYSFEP-LGKWEIDRGDQYLAYDFWWNLPNE-VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSL  244 (462)
T ss_dssp             EEECTTTCCE-EEECCSBCTTCCCCCCEEEETTTT-EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEE
T ss_pred             EEEECCCCeE-EEEEccCCCCccccceEEECCCCC-EEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEE
Confidence            9999998774 5555422  1 2244578899987 444553                   3689999999999888877


Q ss_pred             ecC-----ceEEEE--ecCCCEEEEEEc------CCcEEEEECCCCeE--EEE--EcCC----------------CCCeE
Q 003271          680 KSG-----ATQMRF--QPRLGRILAAAI------ENYISILDVETQVC--RLK--LQGH----------------KNQVH  726 (835)
Q Consensus       680 ~~~-----i~~l~f--sp~~~~ll~~s~------dg~I~IwDl~t~~~--i~~--l~~h----------------~~~I~  726 (835)
                      ..+     ...+.|  +|++.++++++.      ++.|.+|....+..  ...  +...                .....
T Consensus       245 ~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa  324 (462)
T 2ece_A          245 TLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVT  324 (462)
T ss_dssp             ESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCC
T ss_pred             ecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCcee
Confidence            653     344555  999999888875      46787766544321  111  1110                24567


Q ss_pred             EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCC--------------ceEEEEEeCCCCEEEEEE
Q 003271          727 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGN--------------KFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       727 sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~--------------~V~sv~fspdg~~L~sgs  785 (835)
                      .|.+++||++|+++.  .+.|.+||+......+.+..+...+.              ....+.++|+|++|+++.
T Consensus       325 ~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          325 DIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             CEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             EEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            899999999999988  78999999975444455655554321              368899999999999998

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.05  E-value=1.6e-09  Score=116.48  Aligned_cols=254  Identities=10%  Similarity=0.052  Sum_probs=166.1

Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCC
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHS  640 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~  640 (835)
                      ..+..++ .|.+++.++.|..|| .+++.+..+..+...+.++.+.+++. |+.++.+  |..||. +++. +..+....
T Consensus        25 ~~~d~~g-~l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~--l~~~d~-~g~~-~~~~~~~~   97 (330)
T 3hxj_A           25 PILAKNG-TIYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSIGKDGT-IYFGSDK--VYAINP-DGTE-KWRFDTKK   97 (330)
T ss_dssp             CEECTTS-CEECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEETTTTE-ECCSSCE--EEEECC-CGGG-GGGSCC--
T ss_pred             ceEccCC-eEEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEEecCCc-EEEecCc--EEEECC-CCcE-EEEEECCC
Confidence            4454556 456677788999999 88888776665555667788877765 4445444  888886 3332 22222222


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEE
Q 003271          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---ATQMRFQPRLGRILAAAIENYISILDVETQVCRLK  717 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~  717 (835)
                      .......+. + . .++.++.++.|..+|.. ++....+...   +..+...+++ .+++++.++.|..||.. ++.+..
T Consensus        98 ~~~~~~~~~-~-~-~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g-~l~vgt~~~~l~~~d~~-g~~~~~  171 (330)
T 3hxj_A           98 AIVSDFTIF-E-D-ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDG-TIYVGSNDNYLYAINPD-GTEKWR  171 (330)
T ss_dssp             ---CCEEEE-T-T-EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTS-CEEEECTTSEEEEECTT-SCEEEE
T ss_pred             CcccCceEE-C-C-EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCC-EEEEEcCCCEEEEECCC-CCEeEE
Confidence            222233333 3 3 45567778999999998 7666554422   4455565554 47778888999999999 877777


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          718 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       718 l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      +......+.++.+.+++.+++++  +.|..|| .++   ..+.........+.++.+.+++. |++++.++.|..+|...
T Consensus       172 ~~~~~~~~~~~~~d~~g~l~v~t--~~l~~~d-~~g---~~~~~~~~~~~~~~~~~~~~~g~-l~v~t~~~gl~~~~~~g  244 (330)
T 3hxj_A          172 FKTNDAITSAASIGKDGTIYFGS--DKVYAIN-PDG---TEKWNFYAGYWTVTRPAISEDGT-IYVTSLDGHLYAINPDG  244 (330)
T ss_dssp             EECSSCCCSCCEECTTCCEEEES--SSEEEEC-TTS---CEEEEECCSSCCCSCCEECTTSC-EEEEETTTEEEEECTTS
T ss_pred             EecCCCceeeeEEcCCCEEEEEe--CEEEEEC-CCC---cEEEEEccCCcceeceEECCCCe-EEEEcCCCeEEEECCCC
Confidence            76556677788888888866655  8899999 555   44555555556678888888875 77788888899998544


Q ss_pred             CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ............+..+.+.+++ .|..++.+|.|..+|
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d  281 (330)
T 3hxj_A          245 TEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAIN  281 (330)
T ss_dssp             CEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEEC
T ss_pred             CEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEEC
Confidence            3333444444445556665555 456677787777765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.04  E-value=8.8e-09  Score=118.95  Aligned_cols=255  Identities=10%  Similarity=0.025  Sum_probs=177.0

Q ss_pred             EEEEeCCCeEEEEEcCCCeEEEEecc---------------------------------CC------CCeEEEEECC---
Q 003271          570 LATGGHDKKAVLWCTESFTVKSTLEE---------------------------------HT------QWITDVRFSP---  607 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t~~~i~~l~~---------------------------------h~------~~V~sv~fsp---  607 (835)
                      |.+|+..|.|+|+-+.+++.+..+.-                                 +.      +....+..|.   
T Consensus        18 f~s~g~~g~~~v~g~ps~r~~~~i~vf~~~~~~g~g~~~es~~~l~~~~~~~~~~~~~~~g~~~~~~gd~hh~~~s~t~g   97 (595)
T 1fwx_A           18 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   97 (595)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCCHHHHHHHHHTTCSSCCCCCBCCEEEEEETT
T ss_pred             EeeCCcCceEEEEecCCcceEEEeeeecCCCCcccCCchhHHHHHhccCCccchhhhhccCceecccCCCCccccCCCCC
Confidence            67788899999998888887766521                                 11      2223355554   


Q ss_pred             --CCCEEEEEEC-CCeEEEEecCCCCceeEEee-cCCCCeEEEEE-c-CCCCcEEEEE-----------------eCCCc
Q 003271          608 --SLSRLATSSA-DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDF-H-PSKEDLLCSC-----------------DNNSE  664 (835)
Q Consensus       608 --dg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~-~h~~~V~sl~f-s-p~g~~ll~sg-----------------s~Dg~  664 (835)
                        ||++|+++.. +..|.+.|+.+.+. ...+. .....+..+++ . |+++++++++                 ..++.
T Consensus        98 ~~DG~~lfVnd~~~~rVavIdl~t~~~-~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~  176 (595)
T 1fwx_A           98 KYDGRFLFMNDKANTRVARVRCDVMKC-DAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV  176 (595)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEE-EEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred             CcCCCEEEEEcCCCCEEEEEECCCceE-eeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence              7888887766 45799999998764 44332 22345888888 4 8988887764                 34568


Q ss_pred             EEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCC--------------------------------------cE
Q 003271          665 IRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIEN--------------------------------------YI  704 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg--------------------------------------~I  704 (835)
                      |.++|..+.+.+..+.  +....++++|+++++++.+.+.                                      .|
T Consensus       177 vtvID~~t~~v~~qI~Vgg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V  256 (595)
T 1fwx_A          177 FTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGV  256 (595)
T ss_dssp             EEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTE
T ss_pred             EEEEECCCCeEEEEEEeCCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcE
Confidence            9999999998887766  3456688999999999988553                                      47


Q ss_pred             EEEECCC--CeE-EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC--------CcceEEEeecCCCceEE
Q 003271          705 SILDVET--QVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHS  771 (835)
Q Consensus       705 ~IwDl~t--~~~-i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~--------~~~~i~~l~~~~~~V~s  771 (835)
                      .|.|.++  +.. +..+. -.....++.++|||+++++++  +++|.++|+.+..        ....+......+.....
T Consensus       257 ~VID~~~~~~~~~~~~Ip-vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h  335 (595)
T 1fwx_A          257 KVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLH  335 (595)
T ss_dssp             EEEECSGGGCCSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEE
T ss_pred             EEEeCcccCCceeEEEEe-cCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcce
Confidence            7778776  433 33333 233567899999999999988  8899999998541        01122222334567889


Q ss_pred             EEEeCCCCEEEEEE-cCCeEEEEEcCC----------CcEE-EeccCCCC-----eeEEEEeCCCCEEEEEEC
Q 003271          772 CVFHPTFPSLLVIG-CYETLELWNMTE----------NKTL-TLSAHDKL-----VSSLAASTVNGMVASASH  827 (835)
Q Consensus       772 v~fspdg~~L~sgs-~dg~I~IwDl~~----------~~~~-~l~~h~~~-----V~~la~spdg~~LaSgs~  827 (835)
                      ++|+++| ++++.. -++.|.+||+.+          ...+ ++..|-.+     -.++.+++||++|++++.
T Consensus       336 ~aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk  407 (595)
T 1fwx_A          336 TAFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSK  407 (595)
T ss_dssp             EEECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEES
T ss_pred             EEECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCC
Confidence            9999999 665554 477999999976          4444 44444332     123356899999998864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.04  E-value=4.8e-09  Score=114.78  Aligned_cols=218  Identities=9%  Similarity=0.030  Sum_probs=149.5

Q ss_pred             CCeEEEEECCCCCEEEEEEC--CCeEEEEecCCCCceeEEe-------ecCCCCeEEEEEcCCCCcEEEEEeC-----CC
Q 003271          598 QWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTF-------TGHSTTVMSLDFHPSKEDLLCSCDN-----NS  663 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~--Dg~I~IWDl~t~~~~~~~~-------~~h~~~V~sl~fsp~g~~ll~sgs~-----Dg  663 (835)
                      ..+..|+++++++++++...  ++.++||.+.++.  +..+       ..+-..+.++++++++. ++++-..     +.
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~--~~~~p~~~~~~~~~~~~p~gv~~d~~g~-L~v~D~g~~~~~~~   93 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDG--LIPFPPQSGNAIITFDTVLGIKSDGNGI-VWMLDNGNQSKSVP   93 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTE--EEESCCCCSSCCCCCSCEEEEEECSSSE-EEEEECHHHHTSCC
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCC--eecCCCcccCcccceeEeeEEEEcCCCc-EEEEcCCCCcCCCC
Confidence            67899999999999888642  3436666665332  2322       12456799999999965 5444332     57


Q ss_pred             cEEEEECCCCeeeeEeec---------CceEEEEecCCCEEEEEE----cCCcEEEEECCCCeEEEEEcCCCCCeE-EEE
Q 003271          664 EIRYWSINNGSCAGVFKS---------GATQMRFQPRLGRILAAA----IENYISILDVETQVCRLKLQGHKNQVH-SVC  729 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~---------~i~~l~fsp~~~~ll~~s----~dg~I~IwDl~t~~~i~~l~~h~~~I~-sl~  729 (835)
                      .|.+||+.+++.+..+..         ....++++++++.++++.    .++.|.+||+.+++....+.+|..... ...
T Consensus        94 ~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~  173 (343)
T 2qe8_A           94 KLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDID  173 (343)
T ss_dssp             EEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCC
T ss_pred             eEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccc
Confidence            899999999987766542         247899998777776665    468999999998887776655432111 133


Q ss_pred             EcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-eEEEEEcC---CCc-----
Q 003271          730 WNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT---ENK-----  799 (835)
Q Consensus       730 fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-~I~IwDl~---~~~-----  799 (835)
                      +..+|..+.+.. ++.++.|.                 ..+..++|+|+++.|+++...+ .|+.++..   .+.     
T Consensus       174 ~~~~g~~~~~~~~~g~~~~~~-----------------~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~  236 (343)
T 2qe8_A          174 LVIDGVPVQIGQPDGTVIRPH-----------------LGVNGIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAE  236 (343)
T ss_dssp             CEETTEECBEECTTSCEECCC-----------------CCEEEEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHH
T ss_pred             eeECCEEEEeccCCCceecee-----------------cccceeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhh
Confidence            445666666555 66665542                 2357799999999999988776 66666642   111     


Q ss_pred             ---EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          800 ---TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       800 ---~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                         .+...++......++++++|.++++...++.|.+||
T Consensus       237 ~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d  275 (343)
T 2qe8_A          237 LGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVIT  275 (343)
T ss_dssp             HHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEE
T ss_pred             hhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEE
Confidence               012223445677899999999999888889999986

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.04  E-value=7.6e-08  Score=107.70  Aligned_cols=217  Identities=9%  Similarity=-0.023  Sum_probs=146.9

Q ss_pred             CCCCEEEEE-ECCCeEEEEecCCCCc---eeEEee------c-CCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEE
Q 003271          607 PSLSRLATS-SADRTVRVWDTENPDY---SLRTFT------G-HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWS  669 (835)
Q Consensus       607 pdg~~Latg-s~Dg~I~IWDl~t~~~---~~~~~~------~-h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwD  669 (835)
                      .+.++|++. ..+++|.|+|+.+...   ..+++.      . .......+.+.|+|  +++++..+      +.|.++|
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG--i~Vs~~g~~~g~~~g~v~vlD  170 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA--IYISALGNEEGEGPGGILMLD  170 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC--EEEEEEEETTSCSCCEEEEEC
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe--EEEEcCCCcCCCCCCeEEEEE
Confidence            777777665 4578999999974411   223331      1 11245567788998  66666555      7899999


Q ss_pred             CCCCeeeeEeecC------ceEEEEecCCCEEEEEE-------------------cCCcEEEEECCCCeEEEEEcCCC--
Q 003271          670 INNGSCAGVFKSG------ATQMRFQPRLGRILAAA-------------------IENYISILDVETQVCRLKLQGHK--  722 (835)
Q Consensus       670 l~s~~~~~~~~~~------i~~l~fsp~~~~ll~~s-------------------~dg~I~IwDl~t~~~i~~l~~h~--  722 (835)
                      .++.+.+..+..+      ...+.|+|+++.+++..                   .+..|.+||+.+++.+.++....  
T Consensus       171 ~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g  250 (462)
T 2ece_A          171 HYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEEN  250 (462)
T ss_dssp             TTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTE
T ss_pred             CCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCC
Confidence            9999999888632      33478899999888774                   36899999999988887776421  


Q ss_pred             CCeEEEEE--cCCCCEEEEEeC-------CeEEEEEcCCCCCcceEEEe--ec----------------CCCceEEEEEe
Q 003271          723 NQVHSVCW--NTSGEYLASVSD-------ELVRVWSIGSGSKGECIHEL--SC----------------TGNKFHSCVFH  775 (835)
Q Consensus       723 ~~I~sl~f--spdg~~LasgsD-------g~I~IwDl~t~~~~~~i~~l--~~----------------~~~~V~sv~fs  775 (835)
                      .....+.|  +|++++++++..       ++|.+|....+. ...+..+  ..                .......+.++
T Consensus       251 ~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~-~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS  329 (462)
T 2ece_A          251 RMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGK-WNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDIS  329 (462)
T ss_dssp             EEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTE-EEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEEC
T ss_pred             CccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCc-eeEEEEEeCCCccccccccccccccccCCCceeEEEEC
Confidence            23445655  999998776543       478777665431 1222211  11                02457889999


Q ss_pred             CCCCEEEEEEcC-CeEEEEEcCCC---cEEEeccCC---------------CCeeEEEEeCCCCEEEEEE
Q 003271          776 PTFPSLLVIGCY-ETLELWNMTEN---KTLTLSAHD---------------KLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       776 pdg~~L~sgs~d-g~I~IwDl~~~---~~~~l~~h~---------------~~V~~la~spdg~~LaSgs  826 (835)
                      +|+++|+++... +.|.+||+...   +.+....-.               +....++++|||++|+++.
T Consensus       330 ~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          330 LDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             TTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             CCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            999999998874 59999998632   333211111               1368899999999998887

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=99.02  E-value=4e-08  Score=117.55  Aligned_cols=262  Identities=12%  Similarity=0.080  Sum_probs=170.7

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCC----------e-EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW----------I-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~----------V-~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~  635 (835)
                      +..|++++.++.|+.+|..+++.+.++......          + ..+++  .+..|++++.|+.|..+|..+++.....
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W~~  143 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQ  143 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence            446777778899999999999999887543221          0 11222  3557888889999999999998864433


Q ss_pred             eecCC---CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC------------------------
Q 003271          636 FTGHS---TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG------------------------  682 (835)
Q Consensus       636 ~~~h~---~~V~s-l~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~------------------------  682 (835)
                      .....   ..+.+ ..+. + ..+++.++     .+|.|+.||.++++.+..+...                        
T Consensus       144 ~~~~~~~~~~~~~~P~v~-~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~  221 (668)
T 1kv9_A          144 QTTDPAKPYSITGAPRVV-K-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ  221 (668)
T ss_dssp             ECSCTTSSCBCCSCCEEE-T-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred             ccCCCCCcceecCCCEEE-C-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence            32211   11111 1111 2 33443332     2589999999999988766421                        


Q ss_pred             ----------ceEEEEecCCCEEEEEEcCC-------------------cEEEEECCCCeEEEEEcC--CC-------CC
Q 003271          683 ----------ATQMRFQPRLGRILAAAIEN-------------------YISILDVETQVCRLKLQG--HK-------NQ  724 (835)
Q Consensus       683 ----------i~~l~fsp~~~~ll~~s~dg-------------------~I~IwDl~t~~~i~~l~~--h~-------~~  724 (835)
                                ...+++++..+.+++++.++                   .|..+|.++++.+..+..  |.       .+
T Consensus       222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~  301 (668)
T 1kv9_A          222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ  301 (668)
T ss_dssp             HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred             eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence                      01368888889998887765                   399999999999988764  22       22


Q ss_pred             eEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC------------Cc--------------------
Q 003271          725 VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG------------NK--------------------  768 (835)
Q Consensus       725 I~sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~------------~~--------------------  768 (835)
                      +....+..+|+   +|+.++ +|.++++|..+++   .+.......            .+                    
T Consensus       302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~---~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~  378 (668)
T 1kv9_A          302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPF  378 (668)
T ss_dssp             EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTT
T ss_pred             cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC---EeccccccccccccccccccCCccccccccccCCeeEECCCCc
Confidence            33333334665   577777 9999999999984   332211110            00                    


Q ss_pred             ----eEEEEEeCCCCEEEEEE------------------------------------cCCeEEEEEcCCCcEEEeccCCC
Q 003271          769 ----FHSCVFHPTFPSLLVIG------------------------------------CYETLELWNMTENKTLTLSAHDK  808 (835)
Q Consensus       769 ----V~sv~fspdg~~L~sgs------------------------------------~dg~I~IwDl~~~~~~~l~~h~~  808 (835)
                          ...++++|+...+++..                                    .++.|..||+.+++.+-...+..
T Consensus       379 G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~  458 (668)
T 1kv9_A          379 GAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT  458 (668)
T ss_dssp             CSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS
T ss_pred             cccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC
Confidence                01257788777666532                                    23789999999999883333334


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          809 LVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       809 ~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+....+...+.+|+.++.||.|++||
T Consensus       459 ~~~~~~~~t~gg~vf~g~~dg~l~a~d  485 (668)
T 1kv9_A          459 HWNGGTLSTAGNLVFQGTAAGQMHAYS  485 (668)
T ss_dssp             SCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CCcCceeEeCCCEEEEECCcccchhhh
Confidence            444445556788899999999999986

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.98  E-value=3.8e-10  Score=125.22  Aligned_cols=199  Identities=9%  Similarity=-0.002  Sum_probs=110.2

Q ss_pred             CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCc----
Q 003271          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA----  683 (835)
Q Consensus       608 dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i----  683 (835)
                      ++..|++++.|+.|+.||..+++. +..+..  ..+.+..+..++. ++++++.|+.|+.||..+++.+..+....    
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~-~W~~~~--~~~~s~p~~~~g~-~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~   83 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSI-KWTLKE--DPVLQVPTHVEEP-AFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELV   83 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCE-EEEEEC--CCSCCCC-----C-CEEECTTTCCEEEC-----CCSEECSCCHHHHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCE-EEEecC--CCceecceEcCCC-EEEEeCCCCEEEEEECCCCceeeeeeccCcccc
Confidence            567899999999999999999885 444443  4455555555554 56677889999999999988765554221    


Q ss_pred             -eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271          684 -TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       684 -~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~  761 (835)
                       ....+ ..++.+++++.++.|+.||.++++.+..+..+.    .+.++|++..|++++ |+.|+.||.++++.   +..
T Consensus        84 ~~sp~~-~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~---~W~  155 (369)
T 2hz6_A           84 QASPCR-SSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRTEYTITMYDTKTREL---RWN  155 (369)
T ss_dssp             TTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSC---CCE
T ss_pred             ccCceE-ecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEecCCEEEEEECCCCCE---EEe
Confidence             11111 145678888899999999999999888776543    234556777788777 89999999998843   222


Q ss_pred             eecCCCceEEEEEeCCC---CEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeE-EEEeCCCC
Q 003271          762 LSCTGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENKTLTLSAHDKLVSS-LAASTVNG  820 (835)
Q Consensus       762 l~~~~~~V~sv~fspdg---~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~-la~spdg~  820 (835)
                      +...  .....++..+.   ..+++++.++.|+.||..+++.+-......++.. ..++.++.
T Consensus       156 ~~~~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~pv~~~~~~~~dg~  216 (369)
T 2hz6_A          156 ATYF--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNYASPVVAFYVWQREGL  216 (369)
T ss_dssp             EEEE--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEECSSCEEEEEECTTSSC
T ss_pred             Eecc--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecCCCceEEEEEecCCce
Confidence            2111  01222333332   5688899999999999999998744344455543 33444553

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.98  E-value=1.3e-07  Score=99.65  Aligned_cols=204  Identities=10%  Similarity=0.023  Sum_probs=146.5

Q ss_pred             CeEEEEeccCCC--CeEEEEECCCCCEEEEEEC--CCeEEEEecCCCCceeEEee-cCCCCeEEEEEcCCCCcEEEEEeC
Q 003271          587 FTVKSTLEEHTQ--WITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT-GHSTTVMSLDFHPSKEDLLCSCDN  661 (835)
Q Consensus       587 ~~~i~~l~~h~~--~V~sv~fspdg~~Latgs~--Dg~I~IWDl~t~~~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~  661 (835)
                      .+.+.++. |..  ....+.|++++.++++.+.  ++.|.++|+.+++. +..+. +.......+++.  ++.++++...
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v-~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKV-ENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             ceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCE-EEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            34556663 443  4689999998654444443  57999999999875 44432 222233455655  5568778888


Q ss_pred             CCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-----CCeEEEEEcCCCC
Q 003271          662 NSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGE  735 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~I~sl~fspdg~  735 (835)
                      ++.|.++|..+.+.+..+..+ .....++++++.++++..++.|.++|..+.+.+..+.-..     ..+..+.|. +|.
T Consensus        85 ~~~v~viD~~t~~v~~~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~  163 (266)
T 2iwa_A           85 KNIGFIYDRRTLSNIKNFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGE  163 (266)
T ss_dssp             CSEEEEEETTTTEEEEEEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTE
T ss_pred             CCEEEEEECCCCcEEEEEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCE
Confidence            999999999999999888755 4456677888888888878999999999988877765321     246678887 675


Q ss_pred             EEEEEe-CCeEEEEEcCCCCCcceEEEeecC-------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCC
Q 003271          736 YLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN  798 (835)
Q Consensus       736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-------------~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~  798 (835)
                      +++... ++.|.+.|..++   +.+..+...             ....+.++|+|+++.+++++. .++|++.++...
T Consensus       164 lyvn~~~~~~V~vID~~tg---~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          164 VWANIWQTDCIARISAKDG---TLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             EEEEETTSSEEEEEETTTC---CEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             EEEecCCCCeEEEEECCCC---cEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence            555544 789999999998   555555432             135689999999987777764 568888887554

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.94  E-value=3.4e-08  Score=114.15  Aligned_cols=231  Identities=12%  Similarity=0.122  Sum_probs=165.5

Q ss_pred             CCCEEEEEeC-CCeEEEEEcCCCeEEEEeccC-CCCeEEEEE-C-CCCCEEEEEE------------------CCCeEEE
Q 003271          566 DGKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRF-S-PSLSRLATSS------------------ADRTVRV  623 (835)
Q Consensus       566 dg~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~f-s-pdg~~Latgs------------------~Dg~I~I  623 (835)
                      ||++|++... ++.|.+.|+++.++...+.-- ...+..+++ + |+++++++++                  .++.|.+
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtv  179 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTA  179 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEE
Confidence            8888877765 457999999999988855322 245888898 5 8999999885                  2468999


Q ss_pred             EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC-------------------------------------CcEE
Q 003271          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN-------------------------------------SEIR  666 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D-------------------------------------g~I~  666 (835)
                      +|.++.+.......+.  ....++++|+|+.+++++...                                     +.|.
T Consensus       180 ID~~t~~v~~qI~Vgg--~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~  257 (595)
T 1fwx_A          180 VDADKWEVAWQVLVSG--NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  257 (595)
T ss_dssp             EETTTTEEEEEEEESS--CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EECCCCeEEEEEEeCC--CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence            9999876433333322  356678999998888777443                                     2478


Q ss_pred             EEECCC--Cee-eeEee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCe------------EEEEEcCCCCCeEEE
Q 003271          667 YWSINN--GSC-AGVFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQV------------CRLKLQGHKNQVHSV  728 (835)
Q Consensus       667 iwDl~s--~~~-~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~------------~i~~l~~h~~~I~sl  728 (835)
                      +.|..+  ++. +..+.  ....++.++|||+++++++. ++.|.++|+.+.+            .+..+. -......+
T Consensus       258 VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~  336 (595)
T 1fwx_A          258 VVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHT  336 (595)
T ss_dssp             EEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEE
T ss_pred             EEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcC-CCCCcceE
Confidence            888887  544 44454  34778999999999888775 6899999999653            344443 34567889


Q ss_pred             EEcCCCCEEEEEe--CCeEEEEEcCCC-------CCcceEEEeecCCCceEE-----EEEeCCCCEEEEEEcCC--eE--
Q 003271          729 CWNTSGEYLASVS--DELVRVWSIGSG-------SKGECIHELSCTGNKFHS-----CVFHPTFPSLLVIGCYE--TL--  790 (835)
Q Consensus       729 ~fspdg~~Lasgs--Dg~I~IwDl~t~-------~~~~~i~~l~~~~~~V~s-----v~fspdg~~L~sgs~dg--~I--  790 (835)
                      +|+++| ++++..  |+.|.+||+...       +....+..+..+..+-..     +.++|||++|++...-.  .+  
T Consensus       337 aF~~dG-~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~  415 (595)
T 1fwx_A          337 AFDGRG-NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLN  415 (595)
T ss_dssp             EECTTS-EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCC
T ss_pred             EECCCC-eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCcccccc
Confidence            999999 666665  999999999762       112567777766553321     24589999999987632  44  


Q ss_pred             ---------EEEEcCCCcE
Q 003271          791 ---------ELWNMTENKT  800 (835)
Q Consensus       791 ---------~IwDl~~~~~  800 (835)
                               .++|+.+++.
T Consensus       416 ~gp~~~~~~ql~dis~~~m  434 (595)
T 1fwx_A          416 VGPLKPENDQLIDISGDKM  434 (595)
T ss_dssp             CCSSCCEEEEEEECSSSSC
T ss_pred             CCCCCCCcceEEEcCCCcE
Confidence                     8899976653

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.93  E-value=7.8e-07  Score=93.13  Aligned_cols=221  Identities=7%  Similarity=0.012  Sum_probs=142.6

Q ss_pred             CEEEEEECCCeEEEEecCCCCce----eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cC
Q 003271          610 SRLATSSADRTVRVWDTENPDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SG  682 (835)
Q Consensus       610 ~~Latgs~Dg~I~IWDl~t~~~~----~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~  682 (835)
                      .+|+.+.. +.|+.++++.....    ...+......+.+++|++++..++++...++.|..+++........+.   ..
T Consensus         2 ~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~   80 (267)
T 1npe_A            2 THLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGS   80 (267)
T ss_dssp             EEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCC
T ss_pred             cEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCC
Confidence            34555543 47888888764421    111221224578999999878788888788999999998665443333   24


Q ss_pred             ceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---CeEEEEEcCCCCCcc
Q 003271          683 ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---ELVRVWSIGSGSKGE  757 (835)
Q Consensus       683 i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D---g~I~IwDl~t~~~~~  757 (835)
                      ...++++++++.++++.. .+.|.++++..................++++|++..|+.+. .   +.|.++++..... .
T Consensus        81 p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~  159 (267)
T 1npe_A           81 PEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R  159 (267)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E
T ss_pred             ccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E
Confidence            678999998888887765 57899999875433222322235678999999766655554 3   5888888764321 1


Q ss_pred             eEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          758 CIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       758 ~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .+  ..........+++++++..|+++... +.|.++|+.......+.........|++. .+.++++....+.|.++|
T Consensus       160 ~~--~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d  235 (267)
T 1npe_A          160 IL--AQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMD  235 (267)
T ss_dssp             EE--ECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             EE--EECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEe
Confidence            11  12233567899999998888777764 59999999866544333333445677765 344444444556777654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.91  E-value=2.3e-07  Score=108.93  Aligned_cols=261  Identities=11%  Similarity=0.104  Sum_probs=165.5

Q ss_pred             CCEEEEEeC-CCeEEEEEc-CCCeEEEEeccCCC-Ce----------EEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQ-WI----------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       567 g~~Lasgs~-Dg~I~VWd~-~t~~~i~~l~~h~~-~V----------~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      +..|++++. ++.|..+|. .+++.+..+..... .+          ..+++  .+..|++++.|+.|..+|..+++...
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            446666666 899999999 89999877643221 00          11223  35678888899999999999988643


Q ss_pred             EEeecC-C--CCeE-EEEEcCCCCcEEEEEeC-----CCcEEEEECCCCeeeeEeecC--c-------------------
Q 003271          634 RTFTGH-S--TTVM-SLDFHPSKEDLLCSCDN-----NSEIRYWSINNGSCAGVFKSG--A-------------------  683 (835)
Q Consensus       634 ~~~~~h-~--~~V~-sl~fsp~g~~ll~sgs~-----Dg~I~iwDl~s~~~~~~~~~~--i-------------------  683 (835)
                      +.-... .  ..+. ...+. + ..+++.+..     ++.|+.+|..+++.+..+...  .                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            322211 0  0111 11111 2 334443332     789999999999988766532  1                   


Q ss_pred             --------------------eEEEEecCCCEEEEEEcC----------------CcEEEEECCCCeEEEEEcC--CC---
Q 003271          684 --------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG--HK---  722 (835)
Q Consensus       684 --------------------~~l~fsp~~~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~--h~---  722 (835)
                                          ..+++.+..+.+++++.+                +.|..+|.++++.+..+..  |.   
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                                135677777888877642                2599999999999888753  21   


Q ss_pred             -----CCeEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-------------Cce-----------
Q 003271          723 -----NQVHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NKF-----------  769 (835)
Q Consensus       723 -----~~I~sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-------------~~V-----------  769 (835)
                           .++. +....+|+   +++.++ +|.++++|..++   +.+..+....             .++           
T Consensus       298 ~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~  373 (571)
T 2ad6_A          298 FAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLNRENG---NLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDH  373 (571)
T ss_dssp             CCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTC
T ss_pred             cccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEECCCC---CEEeeecccCCccccccccccCCceecccccCCCCCC
Confidence                 1221 22224674   566666 889999999988   4443332211             111           


Q ss_pred             ---------------EEEEEeCCCCEEEEEEc-------------------------------------CCeEEEEEcCC
Q 003271          770 ---------------HSCVFHPTFPSLLVIGC-------------------------------------YETLELWNMTE  797 (835)
Q Consensus       770 ---------------~sv~fspdg~~L~sgs~-------------------------------------dg~I~IwDl~~  797 (835)
                                     ..++++|+...|++...                                     ++.|..||+.+
T Consensus       374 ~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~t  453 (571)
T 2ad6_A          374 KGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTT  453 (571)
T ss_dssp             CEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTT
T ss_pred             CceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCC
Confidence                           23578888877777642                                     46899999999


Q ss_pred             CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++.+-...+...+....+...+.+|+.++.||.|+.||
T Consensus       454 G~~~W~~~~~~~~~~~~~~t~gg~v~~g~~dg~l~a~D  491 (571)
T 2ad6_A          454 GKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             CCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             CCEEEEecCCCCccceeEEECCCEEEEEcCCCeEEEEE
Confidence            99873333333344433444566778889999999886

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.90  E-value=3.4e-06  Score=102.78  Aligned_cols=263  Identities=7%  Similarity=0.050  Sum_probs=179.5

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-------h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      ...|.++...++|.+.+ |+.+ -|.+||..+++.......       ....|.++...++|. |..|+.++-|.+|+..
T Consensus       262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~  338 (795)
T 4a2l_A          262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPI  338 (795)
T ss_dssp             CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGG
T ss_pred             CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCC
Confidence            45699999999887554 4445 589999888766543321       235799999998876 5556677779999876


Q ss_pred             CCCceeEEeec-------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-----------ecCceEEEEe
Q 003271          628 NPDYSLRTFTG-------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-----------KSGATQMRFQ  689 (835)
Q Consensus       628 t~~~~~~~~~~-------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-----------~~~i~~l~fs  689 (835)
                      +...  ..+..       ....|.++...+++.  +..|+.++-|..||..++......           ...+.+++..
T Consensus       339 ~~~~--~~~~~~~~~~~l~~~~V~~i~~d~~g~--lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d  414 (795)
T 4a2l_A          339 RNRF--KNIRNIPYKNSLSDNVVSCIVEDKDKN--LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVD  414 (795)
T ss_dssp             GGSS--EEECCCTTSSSCSCSSEEEEEECTTSC--EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEE
T ss_pred             cccc--eEEcCCCCCCCCCCCeeEEEEECCCCC--EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEc
Confidence            5442  22211       235699999888765  345777778999998876554321           1236677777


Q ss_pred             cCCCEEEEEEcCCcEEEEECCCCeEEEEEc----CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec-
Q 003271          690 PRLGRILAAAIENYISILDVETQVCRLKLQ----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC-  764 (835)
Q Consensus       690 p~~~~ll~~s~dg~I~IwDl~t~~~i~~l~----~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~-  764 (835)
                      +++..|.+|+.++.|.+||..+++......    .....|.++...++|.+.+++. +-|.+||..++   .. ..+.. 
T Consensus       415 ~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~---~~-~~~~~~  489 (795)
T 4a2l_A          415 EKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQR---SF-TTIEKE  489 (795)
T ss_dssp             TTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTT---EE-EECCBC
T ss_pred             CCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCC---eE-EEcccc
Confidence            776657788888889999998876544322    1345799999999998777665 55889998765   22 22221 


Q ss_pred             ------CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec-------cCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          765 ------TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-------AHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       765 ------~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-------~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                            ....|.++...+++. |.+++. +.|.+||..+++. .+.       .....|.+|...++|.+.++.. +| |
T Consensus       490 ~~~~~~~~~~i~~i~~d~~g~-lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l  564 (795)
T 4a2l_A          490 KDGTPVVSKQITTLFRDSHKR-LWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-F  564 (795)
T ss_dssp             TTCCBCCCCCEEEEEECTTCC-EEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-E
T ss_pred             ccccccCCceEEEEEECCCCC-EEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-c
Confidence                  235788999988887 555555 6689999887766 332       1235689999988888666443 34 4


Q ss_pred             EEe
Q 003271          832 KIW  834 (835)
Q Consensus       832 ~IW  834 (835)
                      ..|
T Consensus       565 ~~~  567 (795)
T 4a2l_A          565 YCF  567 (795)
T ss_dssp             EEE
T ss_pred             eeE
Confidence            444

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.87  E-value=3.4e-06  Score=102.72  Aligned_cols=264  Identities=8%  Similarity=0.087  Sum_probs=176.7

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc-------CCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~-------h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      ...|.++...+++.+.+ |+.++-|.+||..+++.......       ....|.++...+++.+.+ |+.+ -|.+||..
T Consensus       214 ~~~i~~i~~d~~g~lwi-gt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~  290 (795)
T 4a2l_A          214 TKQIQAILQQSPTRIWV-ATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWI-GTFN-DLNIYHEG  290 (795)
T ss_dssp             CCCEEEEEEEETTEEEE-EEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEE-EESS-CEEEEETT
T ss_pred             CCeeEEEEEcCCCCEEE-EECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEE-EeCC-hhheEcCC
Confidence            46799999888886544 55555599999888765543322       135699999998887554 4455 48899987


Q ss_pred             CCCceeEEee--------cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe---------ecCceEEEEec
Q 003271          628 NPDYSLRTFT--------GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---------KSGATQMRFQP  690 (835)
Q Consensus       628 t~~~~~~~~~--------~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~---------~~~i~~l~fsp  690 (835)
                      +...  ..+.        -....|.++...++|.  +..|+.++-|.+|+..+.......         ...+.++....
T Consensus       291 ~~~~--~~~~~~~~~~~~l~~~~i~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~  366 (795)
T 4a2l_A          291 TDSF--ASYSSNPVENGSLSQRSVRSIFMDSQGG--MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDK  366 (795)
T ss_dssp             TTEE--EEECCCTTSTTSCSSSCEEEEEECTTSC--EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECT
T ss_pred             CCeE--EEEecCCCCCCCCCCCcEEEEEEeCCcC--EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECC
Confidence            6542  2221        1235799999988876  445666778999987654332211         12366777777


Q ss_pred             CCCEEEEEEcCCcEEEEECCCCeEEEEEcC--------CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271          691 RLGRILAAAIENYISILDVETQVCRLKLQG--------HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       691 ~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~--------h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~  761 (835)
                      ++ .+.+|+.++.|..||..++........        ....|.+++..++|.+|..|+ ++-|.+||..++   .. ..
T Consensus       367 ~g-~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~---~~-~~  441 (795)
T 4a2l_A          367 DK-NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSG---QV-EN  441 (795)
T ss_dssp             TS-CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTC---CE-EE
T ss_pred             CC-CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCC---cE-EE
Confidence            64 466788888899999987765443211        245799999999999444455 678999998876   22 22


Q ss_pred             ee-----cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-------CCCCeeEEEEeCCCCEEEEEECCC
Q 003271          762 LS-----CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-------HDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       762 l~-----~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-------h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      +.     .....|.++...+++. |.+++. +.|.+||..+++...+..       ....|.++...++|.+.+... +|
T Consensus       442 ~~~~~~~l~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~G  518 (795)
T 4a2l_A          442 FNQRNSQLVNENVYAILPDGEGN-LWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-EG  518 (795)
T ss_dssp             ECTTTSCCSCSCEEEEEECSSSC-EEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-SC
T ss_pred             eecCCCCcCCCeeEEEEECCCCC-EEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-Cc
Confidence            22     2345788999888887 555555 569999998877664432       235789999998888666543 44


Q ss_pred             cEEEe
Q 003271          830 CVKIW  834 (835)
Q Consensus       830 ~V~IW  834 (835)
                       |.+|
T Consensus       519 -l~~~  522 (795)
T 4a2l_A          519 -LSVF  522 (795)
T ss_dssp             -EEEE
T ss_pred             -eEEE
Confidence             5554

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.84  E-value=4.5e-07  Score=106.69  Aligned_cols=263  Identities=10%  Similarity=0.039  Sum_probs=164.9

Q ss_pred             CCEEEEEeC-CCeEEEEEc-CCCeEEEEeccCCCC-----------eEEEEECCCCCE----EEEEECCCeEEEEecCCC
Q 003271          567 GKLLATGGH-DKKAVLWCT-ESFTVKSTLEEHTQW-----------ITDVRFSPSLSR----LATSSADRTVRVWDTENP  629 (835)
Q Consensus       567 g~~Lasgs~-Dg~I~VWd~-~t~~~i~~l~~h~~~-----------V~sv~fspdg~~----Latgs~Dg~I~IWDl~t~  629 (835)
                      +..|++++. ++.|.-+|. .+++.+..+......           ...+++.|.+..    |++++.|+.|..+|..++
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG  141 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCC
Confidence            446666776 889999999 899998777543211           123455443334    888889999999999998


Q ss_pred             CceeEEeecC-C--CCeEE-EEEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC--c---------------
Q 003271          630 DYSLRTFTGH-S--TTVMS-LDFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG--A---------------  683 (835)
Q Consensus       630 ~~~~~~~~~h-~--~~V~s-l~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~--i---------------  683 (835)
                      +.+.+.-... .  ..+.+ ..+. + ..+++.++     .++.|+.+|.++++.+..+...  .               
T Consensus       142 ~~~W~~~~~~~~~~~~~~ssP~v~-~-g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~  219 (599)
T 1w6s_A          142 ETVWKVENSDIKVGSTLTIAPYVV-K-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPH  219 (599)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGG
T ss_pred             CEEEeecCCCCCccceeecCCEEE-C-CEEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccc
Confidence            8644332211 0  01111 1111 2 33443332     3799999999999988766532  1               


Q ss_pred             ------------------------eEEEEecCCCEEEEEEcC----------------CcEEEEECCCCeEEEEEcCCCC
Q 003271          684 ------------------------TQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       684 ------------------------~~l~fsp~~~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~h~~  723 (835)
                                              ...++.+..+.+++++.+                +.|..+|.++++.+..+.....
T Consensus       220 ~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~  299 (599)
T 1w6s_A          220 YGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPH  299 (599)
T ss_dssp             GCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTT
T ss_pred             ccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCC
Confidence                                    134677788888888765                3799999999999888764221


Q ss_pred             ----------CeEEEEEc-CCC---CEEEEEe-CCeEEEEEcCCCCCcceEEEeecC-------------CCce------
Q 003271          724 ----------QVHSVCWN-TSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCT-------------GNKF------  769 (835)
Q Consensus       724 ----------~I~sl~fs-pdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-------------~~~V------  769 (835)
                                ++. +... .+|   ..++.++ +|.|+++|..++   +.+......             ..++      
T Consensus       300 d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~  375 (599)
T 1w6s_A          300 DEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTLDRTDG---ALVSANKLDDTVNVFKSVDLKTGQPVRDPEYG  375 (599)
T ss_dssp             CSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEEETTTC---CEEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred             ccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEEECCCC---CEeecccccCCcccccccccCCCceeeccccC
Confidence                      121 2222 567   4666676 999999999988   444333211             0111      


Q ss_pred             --------------------EEEEEeCCCCEEEEEE---------------------------------------cCCeE
Q 003271          770 --------------------HSCVFHPTFPSLLVIG---------------------------------------CYETL  790 (835)
Q Consensus       770 --------------------~sv~fspdg~~L~sgs---------------------------------------~dg~I  790 (835)
                                          ..++++|+...+++..                                       ..+.|
T Consensus       376 ~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l  455 (599)
T 1w6s_A          376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI  455 (599)
T ss_dssp             CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred             CCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeE
Confidence                                2356777666555532                                       24689


Q ss_pred             EEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          791 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       791 ~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..||+.+++.+-...+...+..-.+...+.+|+.++.||.|+.||
T Consensus       456 ~A~D~~tG~~~W~~~~~~~~~~g~~~tagg~vf~gt~dg~l~A~D  500 (599)
T 1w6s_A          456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (599)
T ss_dssp             EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             EEEECCCCCEEeEecCCCCccCcceEecCCEEEEECCCCeEEEEE
Confidence            999999999873322222222222334567788899999999876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.83  E-value=3.4e-07  Score=95.47  Aligned_cols=192  Identities=12%  Similarity=0.120  Sum_probs=137.8

Q ss_pred             eEEEEeccCCC--CeEEEEECCCCCEEEEEECCC--eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271          588 TVKSTLEEHTQ--WITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (835)
Q Consensus       588 ~~i~~l~~h~~--~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg  663 (835)
                      +.+.++ .|..  ....+.|+ ++.++.+.+.+|  .|+++|+.+++. +..+.-. .......+.++++.+++....++
T Consensus        32 ~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv-~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~  107 (262)
T 3nol_A           32 QIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKT-LQQIELG-KRYFGEGISDWKDKIVGLTWKNG  107 (262)
T ss_dssp             EEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCE-EEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred             EEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcE-EEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence            455566 3443  45789998 666667777665  899999999885 3433322 23333222334567777777899


Q ss_pred             cEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCC--C---CCeEEEEEcCCCCEEE
Q 003271          664 EIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH--K---NQVHSVCWNTSGEYLA  738 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h--~---~~I~sl~fspdg~~La  738 (835)
                      .+.+||..+.+.+..+..+.....++++++.++++..++.|.++|..+.+.+..+.-.  .   ..+..+.|. +|++++
T Consensus       108 ~v~v~D~~t~~~~~ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lya  186 (262)
T 3nol_A          108 LGFVWNIRNLRQVRSFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFA  186 (262)
T ss_dssp             EEEEEETTTCCEEEEEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred             EEEEEECccCcEEEEEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEE
Confidence            9999999999999998866555666678888888877889999999998888776532  1   345567776 676555


Q ss_pred             EEe-CCeEEEEEcCCCCCcceEEEeecC------------CCceEEEEEeCCCCEEEEEEcC
Q 003271          739 SVS-DELVRVWSIGSGSKGECIHELSCT------------GNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       739 sgs-Dg~I~IwDl~t~~~~~~i~~l~~~------------~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      ... ++.|.+.|..++   +.+..+...            ....+.++|+|+++.|++++..
T Consensus       187 n~w~~~~I~vIDp~tG---~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~  245 (262)
T 3nol_A          187 NVWQTNKIVRIDPETG---KVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKL  245 (262)
T ss_dssp             EETTSSEEEEECTTTC---BEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETT
T ss_pred             EEccCCeEEEEECCCC---cEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCC
Confidence            554 889999999998   555555432            2456899999999988888865

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.82  E-value=2.6e-06  Score=91.85  Aligned_cols=233  Identities=10%  Similarity=0.034  Sum_probs=146.3

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-c------------------CCCCeEEEEECCCCCEEEEEE
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-E------------------HTQWITDVRFSPSLSRLATSS  616 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-~------------------h~~~V~sv~fspdg~~Latgs  616 (835)
                      ....+++|++++++++++..++.|..|+..+++...... .                  ....+..+++.++...|+++.
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v~d   98 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD   98 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEEEE
Confidence            345678999999878888889999999987765432211 0                  013578899997333555565


Q ss_pred             CCCeEEEEecCCCCceeEEeec-----CCCCeEEEEEcC-CCCcEEEEEeC-----------------CCcEEEEECCCC
Q 003271          617 ADRTVRVWDTENPDYSLRTFTG-----HSTTVMSLDFHP-SKEDLLCSCDN-----------------NSEIRYWSINNG  673 (835)
Q Consensus       617 ~Dg~I~IWDl~t~~~~~~~~~~-----h~~~V~sl~fsp-~g~~ll~sgs~-----------------Dg~I~iwDl~s~  673 (835)
                      ..+.|.++|..++..  ..+..     .......+++.+ +|. ++++...                 ++.|..||..++
T Consensus        99 ~~~~i~~~d~~~g~~--~~~~~~~~~~~~~~p~~i~~d~~~G~-l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           99 CYYHLSVVGSEGGHA--TQLATSVDGVPFKWLYAVTVDQRTGI-VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             TTTEEEEECTTCEEC--EEEESEETTEECSCEEEEEECTTTCC-EEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             CCCCEEEEeCCCCEE--EEecccCCCCcccccceEEEecCCCE-EEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence            556688888775432  22211     113478899999 875 5544322                 367999998877


Q ss_pred             eeeeEee--cCceEEEEecCCCEEEEEEc-CCcEEEEECCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEeC-----
Q 003271          674 SCAGVFK--SGATQMRFQPRLGRILAAAI-ENYISILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVSD-----  742 (835)
Q Consensus       674 ~~~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~---~~i~~l~~h~~~I~sl~fspdg~~LasgsD-----  742 (835)
                      +......  .....++++++++.++++.. .+.|.+|++...   ... .+..... ...++++++|+++++...     
T Consensus       176 ~~~~~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~-~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~  253 (322)
T 2fp8_A          176 ETTLLLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAE-VLVKIPN-PGNIKRNADGHFWVSSSEELDGN  253 (322)
T ss_dssp             EEEEEEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEE-EEEECSS-EEEEEECTTSCEEEEEEEETTSS
T ss_pred             EEEEeccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccc-eEEeCCC-CCCeEECCCCCEEEEecCccccc
Confidence            6543322  34667999999998777754 589999998742   211 1111223 788999999987776643     


Q ss_pred             ------CeEEEEEcCCCCCcceEEEeecCC----CceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCc
Q 003271          743 ------ELVRVWSIGSGSKGECIHELSCTG----NKFHSCVFHPTFPSLLVIG-CYETLELWNMTENK  799 (835)
Q Consensus       743 ------g~I~IwDl~t~~~~~~i~~l~~~~----~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~  799 (835)
                            +.|.++|.. +   +.+..+....    ..+..+++. ++ .|++++ ..+.|.++++....
T Consensus       254 ~~~~~~~~v~~~d~~-G---~~~~~~~~~~g~~~~~~~~~~~~-~g-~L~v~~~~~~~i~~~~~~~~~  315 (322)
T 2fp8_A          254 MHGRVDPKGIKFDEF-G---NILEVIPLPPPFAGEHFEQIQEH-DG-LLYIGTLFHGSVGILVYDKKG  315 (322)
T ss_dssp             TTSCEEEEEEEECTT-S---CEEEEEECCTTTTTSCCCEEEEE-TT-EEEEECSSCSEEEEEEC----
T ss_pred             ccCCCccEEEEECCC-C---CEEEEEECCCCCccccceEEEEe-CC-EEEEeecCCCceEEEeccccc
Confidence                  467777753 3   4444444332    345666663 44 455554 56688888876443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.79  E-value=7.4e-06  Score=99.55  Aligned_cols=272  Identities=8%  Similarity=-0.061  Sum_probs=174.8

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec--------------cCCCCeEEEEECCCCCEEEEEECCCe
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE--------------EHTQWITDVRFSPSLSRLATSSADRT  620 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~--------------~h~~~V~sv~fspdg~~Latgs~Dg~  620 (835)
                      ...|.++....+|. |..|+..+-|.++|..+........              .....|.++....++. |..|+.++-
T Consensus       257 ~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~G  334 (781)
T 3v9f_A          257 SSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGG  334 (781)
T ss_dssp             CCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSC
T ss_pred             CceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCe
Confidence            45699999988885 5556665678899987765432211              1345799999988876 556666777


Q ss_pred             EEEEecCCCCceeEEe--------ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------ecCceEE
Q 003271          621 VRVWDTENPDYSLRTF--------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------KSGATQM  686 (835)
Q Consensus       621 I~IWDl~t~~~~~~~~--------~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------~~~i~~l  686 (835)
                      |..|+..+........        ......|.++...+++. + ..|+.++-|.+||..++......      ...+.++
T Consensus       335 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i  412 (781)
T 3v9f_A          335 INFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-L-WIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCS  412 (781)
T ss_dssp             EEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-E-EEEEBSSCEEEEETTEEEEECC-----CCCSBEEEE
T ss_pred             EEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-E-EEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEE
Confidence            8999887654311111        01235689998888765 3 35565667899998765433211      1236666


Q ss_pred             EEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-
Q 003271          687 RFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-  763 (835)
Q Consensus       687 ~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-  763 (835)
                      ...+++ .|.+++.++.|..||..+++......  .....|.++...++|.+.++.. +-|.+||..++.. ..+.... 
T Consensus       413 ~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~-~~~~~~~~  489 (781)
T 3v9f_A          413 LKDSEG-NLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKV-IHHYDTSN  489 (781)
T ss_dssp             EECTTS-CEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSC-CEEECTTT
T ss_pred             EECCCC-CEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeE-EecccCcc
Confidence            666654 56667877889999998776543221  1346799999988887666554 6689999877532 1111111 


Q ss_pred             --cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc----CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          764 --CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA----HDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       764 --~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~----h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        .....|.++...+++. |.+++.++.|..||..+++...+..    ....|.+|...++|.+.++. .+|.|..||
T Consensus       490 ~~~~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d  565 (781)
T 3v9f_A          490 SQLLENFVRSIAQDSEGR-FWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPS  565 (781)
T ss_dssp             SSCSCSCEEEEEECTTCC-EEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESC
T ss_pred             cccccceeEEEEEcCCCC-EEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEEC
Confidence              1136788999888887 6666665568889988777665432    23568899988888766544 466546554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.78  E-value=3.7e-06  Score=90.10  Aligned_cols=231  Identities=10%  Similarity=0.029  Sum_probs=143.5

Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-CC-
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-NS-  663 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~-Dg-  663 (835)
                      ..+.+..+... .....++|+++++++++-..++.|..||.....  ...+ .....+.++++.++++ ++++... ++ 
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~~-~~~~~p~gia~~~dG~-l~vad~~~~~~   95 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIHA-TVEGKVSGLAFTSNGD-LVATGWNADSI   95 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEEE-ECSSEEEEEEECTTSC-EEEEEECTTSC
T ss_pred             CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEEE-eCCCCceeEEEcCCCc-EEEEeccCCcc
Confidence            34455555433 567899999999877776678999999987532  2222 2345688999999987 5444432 22 


Q ss_pred             cEEEEECCCCeeeeEeecC----ceEEEEecCCCEEEEEE-cCCcEEEEECCCCeE-EEEEc---------CCCCCeEEE
Q 003271          664 EIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRILAAA-IENYISILDVETQVC-RLKLQ---------GHKNQVHSV  728 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~-i~~l~---------~h~~~I~sl  728 (835)
                      .|..+|..+++........    ...+++.+ ++.++++. .++.|+++|...+.. +....         ..-.....+
T Consensus        96 ~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~-~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi  174 (306)
T 2p4o_A           96 PVVSLVKSDGTVETLLTLPDAIFLNGITPLS-DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  174 (306)
T ss_dssp             EEEEEECTTSCEEEEEECTTCSCEEEEEESS-SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             eEEEEcCCCCeEEEEEeCCCccccCcccccC-CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence            4777887777654333211    23344444 45555555 478999999876532 21111         111234555


Q ss_pred             EEcCCCCEEEEEe--CCeEEEEEcCC-CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE---
Q 003271          729 CWNTSGEYLASVS--DELVRVWSIGS-GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT---  802 (835)
Q Consensus       729 ~fspdg~~Lasgs--Dg~I~IwDl~t-~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~---  802 (835)
                        ++++.+|+.+.  .+.|.+|++.. +.. .....+.. ......++++++|.++++....+.|.+||.. ++...   
T Consensus       175 --s~dg~~lyv~d~~~~~I~~~~~~~~g~~-~~~~~~~~-~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~  249 (306)
T 2p4o_A          175 --KRFGNFLYVSNTEKMLLLRIPVDSTDKP-GEPEIFVE-QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQ  249 (306)
T ss_dssp             --EEETTEEEEEETTTTEEEEEEBCTTSCB-CCCEEEEE-SCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEEC
T ss_pred             --CcCCCEEEEEeCCCCEEEEEEeCCCCCC-CccEEEec-cCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEee
Confidence              78888777766  77999999875 221 11111111 1345678999999865555557799999975 55532   


Q ss_pred             eccCCCCeeEEEEe---CCCCEEEEEEC
Q 003271          803 LSAHDKLVSSLAAS---TVNGMVASASH  827 (835)
Q Consensus       803 l~~h~~~V~~la~s---pdg~~LaSgs~  827 (835)
                      +......+++++|.   ++++.|+.++.
T Consensus       250 ~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          250 AEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             GGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             cccccCCceEEEEecccCCCCEEEEECC
Confidence            22233568999998   88776666554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.77  E-value=2.9e-06  Score=91.42  Aligned_cols=230  Identities=9%  Similarity=0.008  Sum_probs=144.2

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec--------------------CCCCeEEEEEcCCCCcEEE
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG--------------------HSTTVMSLDFHPSKEDLLC  657 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~--------------------h~~~V~sl~fsp~g~~ll~  657 (835)
                      ....+++|.+++++++++..++.|..||..++..  ..+..                    ....+..+++.+++..+++
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~l~v   96 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF--VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYI   96 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE--EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTEEEE
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce--EEEecccccccccccccccchhccccCCCCceEEEcCCCCcEEE
Confidence            3456788999998888888899999999876543  22211                    1135788999973344554


Q ss_pred             EEeCCCcEEEEECCCCeeeeEe--e-----cCceEEEEec-CCCEEEEEEc-----------------CCcEEEEECCCC
Q 003271          658 SCDNNSEIRYWSINNGSCAGVF--K-----SGATQMRFQP-RLGRILAAAI-----------------ENYISILDVETQ  712 (835)
Q Consensus       658 sgs~Dg~I~iwDl~s~~~~~~~--~-----~~i~~l~fsp-~~~~ll~~s~-----------------dg~I~IwDl~t~  712 (835)
                       ++..+.|..+|..+++.....  .     .....+++.+ ++..+++-..                 ++.|..||..++
T Consensus        97 -~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~  175 (322)
T 2fp8_A           97 -VDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTK  175 (322)
T ss_dssp             -EETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTT
T ss_pred             -EECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCC
Confidence             444455888998765432111  1     1256789999 7765544322                 267899998877


Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc----
Q 003271          713 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC----  786 (835)
Q Consensus       713 ~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~----  786 (835)
                      +....... ......|+|++++++|+.+.  .+.|.+|++....... ...+..... ...+++.++|.++++...    
T Consensus       176 ~~~~~~~~-~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~-~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~  252 (322)
T 2fp8_A          176 ETTLLLKE-LHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGT-AEVLVKIPN-PGNIKRNADGHFWVSSSEELDG  252 (322)
T ss_dssp             EEEEEEEE-ESCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTC-EEEEEECSS-EEEEEECTTSCEEEEEEEETTS
T ss_pred             EEEEeccC-CccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCc-cceEEeCCC-CCCeEECCCCCEEEEecCcccc
Confidence            64433221 23346799999999776664  6899999987532111 111111223 788999999985555544    


Q ss_pred             ------CCeEEEEEcCCCcEE-EeccC----CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          787 ------YETLELWNMTENKTL-TLSAH----DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       787 ------dg~I~IwDl~~~~~~-~l~~h----~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                            .+.|..+|.. ++.+ .+...    ...++++++ .++.++++...++.|.+++
T Consensus       253 ~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~  310 (322)
T 2fp8_A          253 NMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILV  310 (322)
T ss_dssp             STTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEE
T ss_pred             cccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEe
Confidence                  3578888875 5544 33322    245777777 3566666665677777663

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.76  E-value=1.8e-06  Score=90.86  Aligned_cols=201  Identities=7%  Similarity=0.046  Sum_probs=138.4

Q ss_pred             eeEEEEEecCCCC--CEEEEEEeCCCCEEEEEeC--CCeEEEEEcCCCeEEEEeccCC-CCeEEEEECCCCCEEEEEE-C
Q 003271          544 TFTEFQLIPASTS--KVESCHFSPDGKLLATGGH--DKKAVLWCTESFTVKSTLEEHT-QWITDVRFSPSLSRLATSS-A  617 (835)
Q Consensus       544 ~~~~i~~l~gH~~--~V~sl~fSpdg~~Lasgs~--Dg~I~VWd~~t~~~i~~l~~h~-~~V~sv~fspdg~~Latgs-~  617 (835)
                      ++..+..++ |..  ....+.|++|+.++++.+.  ++.|.++|+.+++.+..+.-.. .....+++.  +..|+.+. .
T Consensus         8 ~~~vv~~~p-~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~   84 (266)
T 2iwa_A            8 IVEVLNEFP-HDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWL   84 (266)
T ss_dssp             EEEEEEEEE-CCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETT
T ss_pred             CceEEEEEE-CCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEec
Confidence            344555553 443  3689999998755555443  5799999999999998875322 223355554  44555554 5


Q ss_pred             CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--------ceEEEEe
Q 003271          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--------ATQMRFQ  689 (835)
Q Consensus       618 Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--------i~~l~fs  689 (835)
                      ++.|.++|..+.+. +..+......  ...++++++.++++. .++.|.++|..+.+.+..+..+        ...+.|.
T Consensus        85 ~~~v~viD~~t~~v-~~~i~~g~~~--g~glt~Dg~~l~vs~-gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~  160 (266)
T 2iwa_A           85 KNIGFIYDRRTLSN-IKNFTHQMKD--GWGLATDGKILYGSD-GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI  160 (266)
T ss_dssp             CSEEEEEETTTTEE-EEEEECCSSS--CCEEEECSSSEEEEC-SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred             CCEEEEEECCCCcE-EEEEECCCCC--eEEEEECCCEEEEEC-CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE
Confidence            78999999998764 4445322112  233555777777665 5889999999998888776522        4466777


Q ss_pred             cCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCC-------------CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC
Q 003271          690 PRLGRILAAAI-ENYISILDVETQVCRLKLQGH-------------KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG  753 (835)
Q Consensus       690 p~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h-------------~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~  753 (835)
                       + +.+++... ++.|.+.|..+++.+..+.-.             ......|+|+|+++.|++++  .+.|.+.++...
T Consensus       161 -d-g~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~  238 (266)
T 2iwa_A          161 -N-GEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV  238 (266)
T ss_dssp             -T-TEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred             -C-CEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence             4 46666664 689999999999998877531             13568999999987666665  778888887654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.74  E-value=8.8e-07  Score=92.43  Aligned_cols=191  Identities=9%  Similarity=0.047  Sum_probs=137.1

Q ss_pred             eEEEEeccCC--CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       588 ~~i~~l~~h~--~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      +.+.++ .|.  .....+.|+ ++.++++.+.+|.|+++|+.+++..... ......-..+++.  ++.+++....++.+
T Consensus        44 ~Vv~~~-phd~~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~--g~~Ly~ltw~~~~v  118 (268)
T 3nok_A           44 HIIREY-PHATNAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASD--GERLYQLTWTEGLL  118 (268)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEEC--SSCEEEEESSSCEE
T ss_pred             EEEEEE-cCCCccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEe--CCEEEEEEccCCEE
Confidence            445555 343  345788887 4566777778889999999998864443 3222222345554  55677778789999


Q ss_pred             EEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC--CC---CCeEEEEEcCCCCEEEEE
Q 003271          666 RYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~---~~I~sl~fspdg~~Lasg  740 (835)
                      .+||..+.+.+..+........+.++++.|+++..++.|.++|..+.+.+..+.-  +.   ..+..+.|. +|++++..
T Consensus       119 ~V~D~~Tl~~~~ti~~~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanv  197 (268)
T 3nok_A          119 FTWSGMPPQRERTTRYSGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANI  197 (268)
T ss_dssp             EEEETTTTEEEEEEECSSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             EEEECCcCcEEEEEeCCCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEE
Confidence            9999999999999886544455567788898888889999999999988877653  21   245677776 77655555


Q ss_pred             e-CCeEEEEEcCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003271          741 S-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       741 s-Dg~I~IwDl~t~~~~~~i~~l~~-------------~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      . ++.|.+.|..++   +.+..+..             .....+.|+|+|+++.|++++..
T Consensus       198 w~s~~I~vIDp~TG---~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~  255 (268)
T 3nok_A          198 WHSSDVLEIDPATG---TVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL  255 (268)
T ss_dssp             TTCSEEEEECTTTC---BEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred             CCCCeEEEEeCCCC---cEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence            4 789999999998   55555442             12467899999988877777654

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.73  E-value=1.3e-05  Score=85.72  Aligned_cols=236  Identities=9%  Similarity=0.025  Sum_probs=146.6

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC-C-eE
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-R-TV  621 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-g-~I  621 (835)
                      ..+.+..+..+ ....+++|+++|+++++-..++.|..||.+.. ....+. ....+..+++.++++++++.... + .|
T Consensus        21 ~~~~~~~~p~~-~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~-~~~~~~-~~~~p~gia~~~dG~l~vad~~~~~~~v   97 (306)
T 2p4o_A           21 PAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN-QQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPV   97 (306)
T ss_dssp             CEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC-EEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CceEeEeCCCC-CCcceEEECCCCCEEEEeCCCCeEEEECCCCc-eEEEEe-CCCCceeEEEcCCCcEEEEeccCCcceE
Confidence            34455555543 45889999999997777768899999998764 333332 23568899999999866655433 2 46


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee-eeEe----------e--cCceEEEE
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC-AGVF----------K--SGATQMRF  688 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~-~~~~----------~--~~i~~l~f  688 (835)
                      ..+|..+++.....-.........+++.+. ..++++...++.|+++|...++. +...          .  .....+  
T Consensus        98 ~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~-~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--  174 (306)
T 2p4o_A           98 VSLVKSDGTVETLLTLPDAIFLNGITPLSD-TQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--  174 (306)
T ss_dssp             EEEECTTSCEEEEEECTTCSCEEEEEESSS-SEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--
T ss_pred             EEEcCCCCeEEEEEeCCCccccCcccccCC-CcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--
Confidence            667766655321111112223445555544 44555555688999999876531 1100          0  012333  


Q ss_pred             ecCCCEEEEEEc-CCcEEEEECCC-CeE--EEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee
Q 003271          689 QPRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS  763 (835)
Q Consensus       689 sp~~~~ll~~s~-dg~I~IwDl~t-~~~--i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~  763 (835)
                      +++++.++++.. .+.|..||+.. +..  ...+. .......++++++|+++++.. .+.|.+||.. +. ...+..+.
T Consensus       175 s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~-~~~~~~~~  251 (306)
T 2p4o_A          175 KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RS-TTIIAQAE  251 (306)
T ss_dssp             EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTT-CC-EEEEECGG
T ss_pred             CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEEeCCCCeEEEECCC-CC-EEEEeecc
Confidence            788888877765 57899999874 321  11111 113456789999998776666 7799999864 31 11122333


Q ss_pred             cCCCceEEEEEe---CCCCEEEEEEcCC
Q 003271          764 CTGNKFHSCVFH---PTFPSLLVIGCYE  788 (835)
Q Consensus       764 ~~~~~V~sv~fs---pdg~~L~sgs~dg  788 (835)
                      .......+|+|.   |++..|++++..+
T Consensus       252 ~~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          252 QGVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             cccCCceEEEEecccCCCCEEEEECCCC
Confidence            334678999998   8988888887654

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.72  E-value=2e-06  Score=88.90  Aligned_cols=191  Identities=15%  Similarity=0.129  Sum_probs=136.9

Q ss_pred             eEEEEeccCC--CCeEEEEECCCCCEEEEEECC--CeEEEEecCCCCceeEEeecCCC-CeEEEEEcCCCCcEEEEEeCC
Q 003271          588 TVKSTLEEHT--QWITDVRFSPSLSRLATSSAD--RTVRVWDTENPDYSLRTFTGHST-TVMSLDFHPSKEDLLCSCDNN  662 (835)
Q Consensus       588 ~~i~~l~~h~--~~V~sv~fspdg~~Latgs~D--g~I~IWDl~t~~~~~~~~~~h~~-~V~sl~fsp~g~~ll~sgs~D  662 (835)
                      +.+.++ .|.  ..+..+.|+. +.++.+.+.+  ..|+++|+.+++. +....-... .-..+++.  ++.++.....+
T Consensus        10 ~v~~~~-phd~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv-~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~   84 (243)
T 3mbr_X           10 RVVKRY-PHDTTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRI-LQRAEVPPPYFGAGIVAW--RDRLIQLTWRN   84 (243)
T ss_dssp             EEEEEE-ECCTTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCE-EEEEECCTTCCEEEEEEE--TTEEEEEESSS
T ss_pred             EEEEEc-CCCCccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCE-EEEEeCCCCcceeEEEEe--CCEEEEEEeeC
Confidence            455666 454  3567899986 4555565554  4899999999885 343332221 22334444  56677777889


Q ss_pred             CcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC-----CCeEEEEEcCCCCEE
Q 003271          663 SEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-----NQVHSVCWNTSGEYL  737 (835)
Q Consensus       663 g~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-----~~I~sl~fspdg~~L  737 (835)
                      +.+.+||..+.+.+..+..+.....+.++++.|+++..++.|.++|..+.+.+..+.-..     ..+..+.|. +|+++
T Consensus        85 ~~v~v~D~~tl~~~~ti~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~ly  163 (243)
T 3mbr_X           85 HEGFVYDLATLTPRARFRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELL  163 (243)
T ss_dssp             SEEEEEETTTTEEEEEEECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE
T ss_pred             CEEEEEECCcCcEEEEEeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEE
Confidence            999999999999999998665556667788888888888999999999998887765321     345667765 67666


Q ss_pred             EEEe-CCeEEEEEcCCCCCcceEEEeec-------------CCCceEEEEEeCCCCEEEEEEcC
Q 003271          738 ASVS-DELVRVWSIGSGSKGECIHELSC-------------TGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       738 asgs-Dg~I~IwDl~t~~~~~~i~~l~~-------------~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      +... ++.|.+.|..++   +.+..+..             .....+.++++|++..|++++..
T Consensus       164 anvw~s~~I~vIDp~tG---~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK~  224 (243)
T 3mbr_X          164 ANVWLTSRIARIDPASG---KVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGKR  224 (243)
T ss_dssp             EEETTTTEEEEECTTTC---BEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEETT
T ss_pred             EEECCCCeEEEEECCCC---CEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECCC
Confidence            5554 789999999998   55555442             12457899999998888888764

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.72  E-value=6.9e-06  Score=96.49  Aligned_cols=262  Identities=9%  Similarity=0.014  Sum_probs=160.3

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCe---------EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI---------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V---------~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      ..|++++.++.|..+|..+++.+..+.......         ..+++  .+..|++++.|+.|..+|..+++...+.-..
T Consensus        69 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~--~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI--YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE--ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE--ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            355555654559999999999987775432210         11222  3457888889999999999998864333221


Q ss_pred             C-C--CCeE-E-EEEcC--CCCcEEEEEe------CCCcEEEEECCCCeeeeEeecCc----------------------
Q 003271          639 H-S--TTVM-S-LDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSGA----------------------  683 (835)
Q Consensus       639 h-~--~~V~-s-l~fsp--~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~i----------------------  683 (835)
                      . .  ..+. . +....  +++.+++++.      .++.|+.+|..+++.+.......                      
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            1 0  0111 1 11111  2232444543      37899999999998876554210                      


Q ss_pred             ----------------------eEEEEecCCCEEEEEEc--------------------C----CcEEEEECCCCeEEEE
Q 003271          684 ----------------------TQMRFQPRLGRILAAAI--------------------E----NYISILDVETQVCRLK  717 (835)
Q Consensus       684 ----------------------~~l~fsp~~~~ll~~s~--------------------d----g~I~IwDl~t~~~i~~  717 (835)
                                            ..+++++..+.+++++.                    |    +.|..+|.++++.+..
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                                  12466777788888774                    2    5799999999999988


Q ss_pred             EcC--CC--------CCeEEEEEc-CCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-------------Cc-
Q 003271          718 LQG--HK--------NQVHSVCWN-TSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG-------------NK-  768 (835)
Q Consensus       718 l~~--h~--------~~I~sl~fs-pdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-------------~~-  768 (835)
                      +..  |.        .++. +... .+|+   +|+.++ +|.|+++|..++   +.+..+....             .+ 
T Consensus       307 ~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG---~~lw~~~~~~~~~~~~~~~~~~g~p~  382 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNG---KLQNAFPFVDNITWASHIDLKTGRPV  382 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTC---CEEEEEESSSCCCSEEEECTTTCCEE
T ss_pred             EeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCC---CEecccccccCccccccccccCCCEe
Confidence            753  32        1121 2221 4674   677777 999999999988   3443332211             00 


Q ss_pred             -------------------------------eEEEEEeCCCCEEEEEE--------------------------------
Q 003271          769 -------------------------------FHSCVFHPTFPSLLVIG--------------------------------  785 (835)
Q Consensus       769 -------------------------------V~sv~fspdg~~L~sgs--------------------------------  785 (835)
                                                     ...++++|+...+++..                                
T Consensus       383 ~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~  462 (582)
T 1flg_A          383 EREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYD  462 (582)
T ss_dssp             ECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCS
T ss_pred             EccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCC
Confidence                                           01345666665565543                                


Q ss_pred             -cCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          786 -CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       786 -~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                       .++.|..||+.+++.+-...+...+..-.+...+.+++.++.||.|+.||
T Consensus       463 ~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D  513 (582)
T 1flg_A          463 DHVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             SCSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             CCcceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEE
Confidence             25789999999999872222222333222233467888899999999886

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.72  E-value=2.3e-07  Score=110.68  Aligned_cols=263  Identities=9%  Similarity=0.042  Sum_probs=154.6

Q ss_pred             EEEEeC-CCCEEEEEeCCC-----------eEEEEEcCCCeE--EEEec-cCCCCeEEEEECCCCCEEEEEEC-CCeEEE
Q 003271          560 SCHFSP-DGKLLATGGHDK-----------KAVLWCTESFTV--KSTLE-EHTQWITDVRFSPSLSRLATSSA-DRTVRV  623 (835)
Q Consensus       560 sl~fSp-dg~~Lasgs~Dg-----------~I~VWd~~t~~~--i~~l~-~h~~~V~sv~fspdg~~Latgs~-Dg~I~I  623 (835)
                      ++++.+ ++++++.|+.+.           .+.+||..+.+.  +..+. .+.....++++..+++++++|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            566777 888889887643           588999887643  22222 23344456788889999999984 458999


Q ss_pred             EecCCCCceeEEeecCC-CCeEEEEEcCCCCcEEEEEe-CC-----CcEEEEECCCCeeeeEe-----e--cCceEEEEe
Q 003271          624 WDTENPDYSLRTFTGHS-TTVMSLDFHPSKEDLLCSCD-NN-----SEIRYWSINNGSCAGVF-----K--SGATQMRFQ  689 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~-~~V~sl~fsp~g~~ll~sgs-~D-----g~I~iwDl~s~~~~~~~-----~--~~i~~l~fs  689 (835)
                      ||..+...... -..+. ..-.++++.++++ +++.|+ .+     ..+.+||..+.+....-     .  .......+.
T Consensus       270 yd~~t~~W~~~-~~~~~~R~~~s~~~~~dg~-iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~  347 (656)
T 1k3i_A          270 YDSSSDSWIPG-PDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYR  347 (656)
T ss_dssp             EEGGGTEEEEC-CCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGT
T ss_pred             ecCcCCceeEC-CCCCccccccceEEecCCe-EEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceee
Confidence            99987653211 11111 1223455666766 565666 34     57999999887654321     0  000001122


Q ss_pred             cCCCEEEEEEcC---------CcEEEEECCCCeEEEEEcCCC---------CCeEEEEEc-CCCCEEEEEe-CC------
Q 003271          690 PRLGRILAAAIE---------NYISILDVETQVCRLKLQGHK---------NQVHSVCWN-TSGEYLASVS-DE------  743 (835)
Q Consensus       690 p~~~~ll~~s~d---------g~I~IwDl~t~~~i~~l~~h~---------~~I~sl~fs-pdg~~Lasgs-Dg------  743 (835)
                      .++..++.++.+         ..+..||..+.........+.         ..-.++.|. .+++++++|+ ++      
T Consensus       348 ~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~  427 (656)
T 1k3i_A          348 SDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDA  427 (656)
T ss_dssp             TTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBC
T ss_pred             cCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCc
Confidence            334444555444         356788888765433222111         123445554 3677777766 32      


Q ss_pred             -----eEEEEEcCCCCCcceEEEe--ecCC-CceEEEEEeCCCCEEEEEEcC-----------CeEEEEEcCCCcEEEec
Q 003271          744 -----LVRVWSIGSGSKGECIHEL--SCTG-NKFHSCVFHPTFPSLLVIGCY-----------ETLELWNMTENKTLTLS  804 (835)
Q Consensus       744 -----~I~IwDl~t~~~~~~i~~l--~~~~-~~V~sv~fspdg~~L~sgs~d-----------g~I~IwDl~~~~~~~l~  804 (835)
                           .|.+||..+.   ......  .... ....+++..|+++.+++|+.+           ..+.+||..+.+...+.
T Consensus       428 ~~~~~~v~~yd~~~~---~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~  504 (656)
T 1k3i_A          428 TTNAHIITLGEPGTS---PNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQN  504 (656)
T ss_dssp             CCCEEEEECCSTTSC---CEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECC
T ss_pred             CCcceEEEcCCCCCC---CeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecC
Confidence                 6778887665   222221  1122 223455677899998888854           46899999888766433


Q ss_pred             c---CCCCeeEEEEeCCCCEEEEEEC
Q 003271          805 A---HDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       805 ~---h~~~V~~la~spdg~~LaSgs~  827 (835)
                      .   ......+..+.+++++++.|+.
T Consensus       505 ~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          505 PNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCCCccccccHhhcCCCcEEEecCCC
Confidence            2   1222334556689999999985

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.71  E-value=1.4e-06  Score=104.24  Aligned_cols=253  Identities=13%  Similarity=0.135  Sum_probs=157.1

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEEC------CCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----~~V~s-v~fspdg~~Latgs~------Dg~I~IWDl~t~~~~~~~  635 (835)
                      +..|++++.|+.|+.+|.++++.+..+....    ..+.+ ..+. ++ .+++++.      +|.|+.||..+++.....
T Consensus       117 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  194 (668)
T 1kv9_A          117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVV-KG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRF  194 (668)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEE-TT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEE-CC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEe
Confidence            4578888899999999999999987775421    11111 1111 33 4555433      589999999998864333


Q ss_pred             eec--CC----------------------------CCeEEEEEcCCCCcEEEEEeCCC-------------------cEE
Q 003271          636 FTG--HS----------------------------TTVMSLDFHPSKEDLLCSCDNNS-------------------EIR  666 (835)
Q Consensus       636 ~~~--h~----------------------------~~V~sl~fsp~g~~ll~sgs~Dg-------------------~I~  666 (835)
                      ...  ..                            .....++++++.. +++.+..++                   .|.
T Consensus       195 ~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~-~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~  273 (668)
T 1kv9_A          195 YTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELD-LLYVGTGNGSPWNREVRSPGGGDNLYLSSIL  273 (668)
T ss_dssp             ESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTT-EEEEECCCEESSCHHHHSTTCCCCTTTTEEE
T ss_pred             cccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCC-EEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence            211  00                            1112467888765 555565554                   499


Q ss_pred             EEECCCCeeeeEeecC------------ceEEEEecCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCC---------
Q 003271          667 YWSINNGSCAGVFKSG------------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK---------  722 (835)
Q Consensus       667 iwDl~s~~~~~~~~~~------------i~~l~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~---------  722 (835)
                      .+|.++++.+..+...            .....+..++.   .+++++.+|.++++|.++++.+..+....         
T Consensus       274 AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~  353 (668)
T 1kv9_A          274 AIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDL  353 (668)
T ss_dssp             EECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECT
T ss_pred             EEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEecccccccccccccccc
Confidence            9999999998777532            11122233554   57888899999999999999885433211         


Q ss_pred             ---CCe------------------------EEEEEcCCCCEEEEE-----------------------------------
Q 003271          723 ---NQV------------------------HSVCWNTSGEYLASV-----------------------------------  740 (835)
Q Consensus       723 ---~~I------------------------~sl~fspdg~~Lasg-----------------------------------  740 (835)
                         .++                        ..++++|+..+++..                                   
T Consensus       354 ~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~  433 (668)
T 1kv9_A          354 ATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPA  433 (668)
T ss_dssp             TTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCG
T ss_pred             ccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeeccccccccccccCccccccCCCCC
Confidence               000                        125677776655541                                   


Q ss_pred             -e-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCC-eeEEEEe
Q 003271          741 -S-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKL-VSSLAAS  816 (835)
Q Consensus       741 -s-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~-V~~la~s  816 (835)
                       . +|.|+.||+.++   +.+-..... ..+....+...+..+++++.++.|++||.++++.+ .+...... -.-+.+.
T Consensus       434 ~~~~g~l~A~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~  509 (668)
T 1kv9_A          434 AVVSGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFE  509 (668)
T ss_dssp             GGCEEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred             CCccceEEEEeCCCC---cEEEEccCC-CCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEecCCCCcccCceEEE
Confidence             1 378999999988   554444432 23333445556778999999999999999999988 33322211 1234445


Q ss_pred             CCCC-EEEEEE
Q 003271          817 TVNG-MVASAS  826 (835)
Q Consensus       817 pdg~-~LaSgs  826 (835)
                      .+|+ +++.++
T Consensus       510 ~~G~~yva~~~  520 (668)
T 1kv9_A          510 LAGRQYVAIMA  520 (668)
T ss_dssp             ETTEEEEEEEE
T ss_pred             ECCEEEEEEEe
Confidence            5676 444443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.67  E-value=1.9e-05  Score=95.88  Aligned_cols=268  Identities=9%  Similarity=0.041  Sum_probs=172.1

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-------cCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-------EHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-------~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      ...|.++...++|.+.+ |+.+ -|.+||..+.+......       .....|.++....++. |..|+..+-|.++|..
T Consensus       210 ~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~  286 (781)
T 3v9f_A          210 GNDVRCIYKDTNGNIWI-GTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQ  286 (781)
T ss_dssp             CSSEEEEEECTTCCEEE-EETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETT
T ss_pred             CCceeEEEEcCCCCEEE-EeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCC
Confidence            35699999998887655 4444 69999988766543221       1245699999988775 5556664568889987


Q ss_pred             CCCceeEEe-------------ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe------------ecC
Q 003271          628 NPDYSLRTF-------------TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF------------KSG  682 (835)
Q Consensus       628 t~~~~~~~~-------------~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~------------~~~  682 (835)
                      +........             .-....|.++....+|.  +..|+.++-|..|+..+.......            ...
T Consensus       287 ~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~--lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  364 (781)
T 3v9f_A          287 QNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN--IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKV  364 (781)
T ss_dssp             CC---------CEEECBCSSTTSBSSSCEEEEEECSSCC--EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSC
T ss_pred             CCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC--EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcc
Confidence            654311111             11345799999888875  445666778899998765433221            123


Q ss_pred             ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE---cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceE
Q 003271          683 ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL---QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECI  759 (835)
Q Consensus       683 i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l---~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i  759 (835)
                      +.+++...+ +.|.+|+.++.|.+||..++......   ......|.+++..++|.+.+...++-|.+||..++   . +
T Consensus       365 v~~i~~d~~-g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~---~-~  439 (781)
T 3v9f_A          365 VSSVCDDGQ-GKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLK---K-F  439 (781)
T ss_dssp             EEEEEECTT-SCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSC---E-E
T ss_pred             eEEEEEcCC-CCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCC---c-E
Confidence            666776665 45667787888999998765433211   12346799999988888777544677999988765   2 2


Q ss_pred             EEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEecc-C-----CCCeeEEEEeCCCCEEEEEECCCc
Q 003271          760 HELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSA-H-----DKLVSSLAASTVNGMVASASHDKC  830 (835)
Q Consensus       760 ~~l~---~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~-h-----~~~V~~la~spdg~~LaSgs~DG~  830 (835)
                      ..+.   .....|.++...+++. |.+++. +.|.+||..+++...+.. .     ...|.++...++|.+.+....+| 
T Consensus       440 ~~~~~~~~~~~~v~~i~~d~~g~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-  516 (781)
T 3v9f_A          440 QIIELEKNELLDVRVFYEDKNKK-IWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-  516 (781)
T ss_dssp             EECCSTTTCCCCEEEEEECTTSE-EEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-
T ss_pred             EEeccCCCCCCeEEEEEECCCCC-EEEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-
Confidence            2222   2346788888888776 666666 679999988876543321 1     36789999988887665443344 


Q ss_pred             EEEeC
Q 003271          831 VKIWK  835 (835)
Q Consensus       831 V~IWd  835 (835)
                      |..||
T Consensus       517 l~~~~  521 (781)
T 3v9f_A          517 VGIYT  521 (781)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            44443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.66  E-value=7.2e-05  Score=80.61  Aligned_cols=226  Identities=8%  Similarity=-0.037  Sum_probs=146.0

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCC---CceeEEeecCCCCeE
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENP---DYSLRTFTGHSTTVM  644 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~---~~~~~~~~~h~~~V~  644 (835)
                      +|+.+. ...|+..|+.+.+....+. ....+..++|++.+..|+.+ ..++.|..+++...   ......+...-....
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~   80 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEEC-CCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC
Confidence            444444 3568999998876655554 34567899999876555554 45689999998761   221222322234568


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEc
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ  719 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~  719 (835)
                      .+++++.+..++++-...+.|.++++........+.   .....++++|.++.++.+...  +.|..+++..........
T Consensus        81 glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~  160 (316)
T 1ijq_A           81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (316)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             EEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEE
Confidence            899988767787777778899999987544333333   236789999988888887764  688888886443332233


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcC
Q 003271          720 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT  796 (835)
Q Consensus       720 ~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~  796 (835)
                      ..-.....|++++++..|+.+.  .+.|.++|+.... ...+............+++..  ..|+.+. ..+.|..+|..
T Consensus       161 ~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~-~~~~~~~~~~~~~P~giav~~--~~ly~~d~~~~~V~~~~~~  237 (316)
T 1ijq_A          161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFE--DKVFWTDIINEAIFSANRL  237 (316)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEECTTTTSSEEEEEEET--TEEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCc-eEEEeecCCccCCcEEEEEEC--CEEEEEECCCCeEEEEeCC
Confidence            3345678999999887777766  6799999987532 222322222234567777753  3555555 45689999976


Q ss_pred             CCc
Q 003271          797 ENK  799 (835)
Q Consensus       797 ~~~  799 (835)
                      +++
T Consensus       238 ~g~  240 (316)
T 1ijq_A          238 TGS  240 (316)
T ss_dssp             TCC
T ss_pred             CCc
Confidence            655

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.66  E-value=2.3e-05  Score=85.82  Aligned_cols=235  Identities=9%  Similarity=0.001  Sum_probs=153.1

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeE
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~  634 (835)
                      +..+|.+..++. +|+.+. ...|+..++........+.. ...+..++|++....|+.+ ...+.|..+++..... ..
T Consensus        34 d~~~C~~~~~~~-~ll~~~-~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~  109 (349)
T 3v64_C           34 DRRSCKALGPEP-VLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EE  109 (349)
T ss_dssp             TSSCEEESSSCC-EEEEEC-BSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE
T ss_pred             CCCcccccccCc-eeEeec-ccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCc-eE
Confidence            445666666644 454443 35688888877665555543 3457899999765555554 4578899999886543 22


Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEEC
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDV  709 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl  709 (835)
                      ...........+++.+.+..++++-...+.|.++++........+.   .....++++|.++.++.+...  +.|..+++
T Consensus       110 ~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~  189 (349)
T 3v64_C          110 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSM  189 (349)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEET
T ss_pred             EEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeC
Confidence            2332334567899998777788787778899999987554333332   236789999988888877653  67888888


Q ss_pred             CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-
Q 003271          710 ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-  786 (835)
Q Consensus       710 ~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-  786 (835)
                      ........+...-.....|+|++++..|+.+.  .+.|..+|+....   ....+.........+++. .+ .|+.+.. 
T Consensus       190 dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~  264 (349)
T 3v64_C          190 DGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWH  264 (349)
T ss_dssp             TSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETT
T ss_pred             CCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCc---eEEEEeCCCCCceEEEEE-CC-EEEEecCC
Confidence            75433322222345678999998877777766  6799999987542   122222334566778873 33 5555554 


Q ss_pred             CCeEEEEEcCCCc
Q 003271          787 YETLELWNMTENK  799 (835)
Q Consensus       787 dg~I~IwDl~~~~  799 (835)
                      .+.|..+|..+++
T Consensus       265 ~~~V~~~~~~~G~  277 (349)
T 3v64_C          265 TKSINSANKFTGK  277 (349)
T ss_dssp             TTEEEEEETTTCC
T ss_pred             CCeEEEEEccCCC
Confidence            5688888855554

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.66  E-value=4.8e-06  Score=97.61  Aligned_cols=252  Identities=9%  Similarity=0.018  Sum_probs=152.9

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEEC------CCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----~~V~s-v~fspdg~~Latgs~------Dg~I~IWDl~t~~~~~~~  635 (835)
                      +..|++++.|+.|..+|..+++.+..+....    ..+.+ .... ++ .+++++.      ++.|..+|..+++...+.
T Consensus       115 ~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~  192 (571)
T 2ad6_A          115 AGQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-KD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRA  192 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-CC-EEEEEecCCccCCCCEEEEEECCCCcEEEEE
Confidence            4578888889999999999999987664321    01211 1111 33 5555554      789999999998863332


Q ss_pred             eecCCC-------------------------------------CeEEEEEcCCCCcEEEEEeC-----------C----C
Q 003271          636 FTGHST-------------------------------------TVMSLDFHPSKEDLLCSCDN-----------N----S  663 (835)
Q Consensus       636 ~~~h~~-------------------------------------~V~sl~fsp~g~~ll~sgs~-----------D----g  663 (835)
                      ......                                     ....+++.++...+++..+.           |    +
T Consensus       193 ~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~  272 (571)
T 2ad6_A          193 FATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTM  272 (571)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTT
T ss_pred             ccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEE
Confidence            221100                                     00235566665544433321           1    3


Q ss_pred             cEEEEECCCCeeeeEeecC---------ceE-E--EEecCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCC------
Q 003271          664 EIRYWSINNGSCAGVFKSG---------ATQ-M--RFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK------  722 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~~---------i~~-l--~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~------  722 (835)
                      .|..+|.++++.+..+...         ... +  ....+++   .+++++.+|.++++|.++++.+..+....      
T Consensus       273 ~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~  352 (571)
T 2ad6_A          273 TIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFK  352 (571)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEE
T ss_pred             EEEEEecCCCcEEEEecCCCCcccccccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccc
Confidence            5999999999988776521         111 1  1223553   46677788999999999999887664221      


Q ss_pred             -------CCe--------------------------EEEEEcCCCCEEEEEe----------------------------
Q 003271          723 -------NQV--------------------------HSVCWNTSGEYLASVS----------------------------  741 (835)
Q Consensus       723 -------~~I--------------------------~sl~fspdg~~Lasgs----------------------------  741 (835)
                             .++                          ..++++|+..+|++..                            
T Consensus       353 ~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~  432 (571)
T 2ad6_A          353 KVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMY  432 (571)
T ss_dssp             EECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEE
T ss_pred             cccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccccccCCccccccceec
Confidence                   111                          2356777776666543                            


Q ss_pred             ----------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC-CC
Q 003271          742 ----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-KL  809 (835)
Q Consensus       742 ----------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~~  809 (835)
                                ++.|..||+.++   +.+-++... ..+....+...+..+++++.|+.|++||.++++++ .+.... ..
T Consensus       433 ~~~~~~~~~~~g~l~a~D~~tG---~~~W~~~~~-~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~  508 (571)
T 2ad6_A          433 PGPNGPTKKEMGQIRAFDLTTG---KAKWTKWEK-FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGI  508 (571)
T ss_dssp             ECTTSTTSCCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCC
T ss_pred             cCccccCCCCCCeEEEEECCCC---CEEEEecCC-CCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcE
Confidence                      368889998887   444444322 22222333345667888999999999999999988 332221 11


Q ss_pred             eeEEEEeCCCCEEEE
Q 003271          810 VSSLAASTVNGMVAS  824 (835)
Q Consensus       810 V~~la~spdg~~LaS  824 (835)
                      -.-+.+..+++.++.
T Consensus       509 ~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          509 GSPMTYSFKGKQYIG  523 (571)
T ss_dssp             SCCEEEEETTEEEEE
T ss_pred             eeeEEEEECCEEEEE
Confidence            122345567774443

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.64  E-value=3.7e-06  Score=87.71  Aligned_cols=194  Identities=14%  Similarity=0.172  Sum_probs=131.3

Q ss_pred             eEEEEEecCCCCC--EEEEEEeCCCCEEEEEeCCC--eEEEEEcCCCeEEEEeccCCCC-eEEEEECCCCCEEEEEE-CC
Q 003271          545 FTEFQLIPASTSK--VESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQW-ITDVRFSPSLSRLATSS-AD  618 (835)
Q Consensus       545 ~~~i~~l~gH~~~--V~sl~fSpdg~~Lasgs~Dg--~I~VWd~~t~~~i~~l~~h~~~-V~sv~fspdg~~Latgs-~D  618 (835)
                      +..+..+ .|...  ...+.|+ ++.++.+++.+|  .|+++|+++++.+..+...... -..+++  ++..|+... .+
T Consensus        31 ~~vv~~~-phd~~~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~  106 (262)
T 3nol_A           31 YQIVHSY-PHDTKAFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKN  106 (262)
T ss_dssp             EEEEEEE-ECCTTCEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSS
T ss_pred             eEEEEEe-cCCCCcccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeC
Confidence            4445555 44433  4788998 677777777766  8999999999999887643322 123444  344555554 47


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--------ceEEEEec
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--------ATQMRFQP  690 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--------i~~l~fsp  690 (835)
                      +.+.+||..+.+. +..+.... .-..++  +++..++++- .++.|.++|..+.+.+..+...        +..+.|. 
T Consensus       107 ~~v~v~D~~t~~~-~~ti~~~~-eG~glt--~dg~~L~~Sd-Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-  180 (262)
T 3nol_A          107 GLGFVWNIRNLRQ-VRSFNYDG-EGWGLT--HNDQYLIMSD-GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-  180 (262)
T ss_dssp             SEEEEEETTTCCE-EEEEECSS-CCCCEE--ECSSCEEECC-SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred             CEEEEEECccCcE-EEEEECCC-CceEEe--cCCCEEEEEC-CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence            8999999998775 55554322 223343  5566666554 4788999999999888776531        2346665 


Q ss_pred             CCCEEEEEE-cCCcEEEEECCCCeEEEEEcCC------------CCCeEEEEEcCCCCEEEEEeCCeEEEEE
Q 003271          691 RLGRILAAA-IENYISILDVETQVCRLKLQGH------------KNQVHSVCWNTSGEYLASVSDELVRVWS  749 (835)
Q Consensus       691 ~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h------------~~~I~sl~fspdg~~LasgsDg~I~IwD  749 (835)
                      + +.+++.. .++.|.+.|.++++.+..+.-.            ......|+|+|+++.|+..+..-=++|.
T Consensus       181 ~-G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK~Wp~~~e  251 (262)
T 3nol_A          181 D-GEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGKLWPKVFE  251 (262)
T ss_dssp             T-TEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEETTCSEEEE
T ss_pred             C-CEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECCCCCceEE
Confidence            4 5677766 4789999999999998877531            2356899999998888777755334443

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.59  E-value=1.1e-05  Score=94.73  Aligned_cols=249  Identities=10%  Similarity=0.003  Sum_probs=149.1

Q ss_pred             EEEEeCCCeEEEEEcCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEE------CCCeEEEEecCCCCceeEEeec
Q 003271          570 LATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----~~V~s-v~fspdg~~Latgs------~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      |++++.|+.|..+|..+++.+.......    ..+.+ ..+. ++ .|++++      .++.|+.+|..+++...+....
T Consensus       124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~  201 (599)
T 1w6s_A          124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT  201 (599)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred             EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence            7888889999999999999987654322    01221 1111 34 455554      3899999999998864333222


Q ss_pred             CCC------------------------------------Ce-EEEEEcCCCCcEEEEEeCC----------------CcE
Q 003271          639 HST------------------------------------TV-MSLDFHPSKEDLLCSCDNN----------------SEI  665 (835)
Q Consensus       639 h~~------------------------------------~V-~sl~fsp~g~~ll~sgs~D----------------g~I  665 (835)
                      ...                                    .+ ..+++.+... +++.+..+                +.|
T Consensus       202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g-~vy~g~g~~~p~~~~~r~gd~~y~~sv  280 (599)
T 1w6s_A          202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTN-LIYFGTGNPAPWNETMRPGDNKWTMTI  280 (599)
T ss_dssp             SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTSSEE
T ss_pred             CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCC-EEEEeCCCCccccCcccCCCccccceE
Confidence            110                                    00 1345666655 44444433                489


Q ss_pred             EEEECCCCeeeeEeecCc----------eEEEEe---cCC---CEEEEEEcCCcEEEEECCCCeEEEEEcCCC-------
Q 003271          666 RYWSINNGSCAGVFKSGA----------TQMRFQ---PRL---GRILAAAIENYISILDVETQVCRLKLQGHK-------  722 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~~~i----------~~l~fs---p~~---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-------  722 (835)
                      ..+|.++++.+..+....          ..+.+.   .++   ..++.++.+|.++++|.++++.+.......       
T Consensus       281 ~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~  360 (599)
T 1w6s_A          281 FGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKS  360 (599)
T ss_dssp             EEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             EEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccc
Confidence            999999999987765321          112222   455   356667789999999999999887654211       


Q ss_pred             ------CCe--------------------------EEEEEcCCCCEEEEEe-----------------------------
Q 003271          723 ------NQV--------------------------HSVCWNTSGEYLASVS-----------------------------  741 (835)
Q Consensus       723 ------~~I--------------------------~sl~fspdg~~Lasgs-----------------------------  741 (835)
                            .++                          ..++++|+..++++..                             
T Consensus       361 ~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~  440 (599)
T 1w6s_A          361 VDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYP  440 (599)
T ss_dssp             ECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             cccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeecccccccCCcceecccceecc
Confidence                  111                          1345666655554421                             


Q ss_pred             -----------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCC-C
Q 003271          742 -----------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHD-K  808 (835)
Q Consensus       742 -----------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~-~  808 (835)
                                 +|.|..||+.++   +.+-..... ..+..-.+...+..+++++.|+.|+.||.++++.+ .+.... .
T Consensus       441 ~p~~~~~~~~~~G~l~A~D~~tG---~~~W~~~~~-~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~  516 (599)
T 1w6s_A          441 GPKGDRQNYEGLGQIKAYNAITG---DYKWEKMER-FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGA  516 (599)
T ss_dssp             CTTSBTTTTBCCEEEEEECTTTC---CEEEEEEES-SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCC
T ss_pred             CCcCCcccCCCcCeEEEEECCCC---CEEeEecCC-CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCc
Confidence                       257788888777   444333221 11211122335667888999999999999999988 333222 1


Q ss_pred             CeeEEEEeCCCC-EEEEE
Q 003271          809 LVSSLAASTVNG-MVASA  825 (835)
Q Consensus       809 ~V~~la~spdg~-~LaSg  825 (835)
                      ...-+.+..+|+ +|++.
T Consensus       517 ~~~P~~y~~~G~qyv~~~  534 (599)
T 1w6s_A          517 IGYPMTYTHKGTQYVAIY  534 (599)
T ss_dssp             CSCCEEEEETTEEEEEEE
T ss_pred             EeccEEEEeCCEEEEEEE
Confidence            222355566777 44433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.59  E-value=2.9e-05  Score=86.31  Aligned_cols=234  Identities=9%  Similarity=-0.002  Sum_probs=152.0

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeEEe
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      ..|.+..+. .+|+.+. ...|+.+++........+.. ...+..++|++....|+.+ ...+.|..+++..... ...+
T Consensus        79 ~~C~~~~~~-~~l~~~~-~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~-~~~~  154 (386)
T 3v65_B           79 RSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNV-EEVV  154 (386)
T ss_dssp             SCEEECSSC-CEEEEEC-BSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCE-EEEE
T ss_pred             CeECCcccc-ceeEeec-CccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCc-EEEE
Confidence            345555553 3554443 46788889877665544443 3457899999765555544 4578899999886542 2223


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEECCC
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDVET  711 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t  711 (835)
                      .........+++++.+..++++-...+.|.++++........+.   .....++++|.++.++.+...  +.|..+++..
T Consensus       155 ~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG  234 (386)
T 3v65_B          155 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  234 (386)
T ss_dssp             CSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCC
Confidence            32334567788988777788777778899999987544333333   236789999988888877654  6788888875


Q ss_pred             CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCC
Q 003271          712 QVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE  788 (835)
Q Consensus       712 ~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg  788 (835)
                      ..........-.....|+|++++..|+.+.  .+.|..+|+....   ....+.........+++. .+ .|+.+. ..+
T Consensus       235 ~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~---~~~~~~~~~~~P~giav~-~~-~ly~td~~~~  309 (386)
T 3v65_B          235 SGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSH---RKAVISQGLPHPFAITVF-ED-SLYWTDWHTK  309 (386)
T ss_dssp             CSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCS---CEEEECSSCSSEEEEEEE-TT-EEEEEETTTT
T ss_pred             CCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCe---eEEEEECCCCCceEEEEE-CC-EEEEeeCCCC
Confidence            443333333445678999998777777666  6789999986532   222223334556778883 33 455554 456


Q ss_pred             eEEEEEcCCCcE
Q 003271          789 TLELWNMTENKT  800 (835)
Q Consensus       789 ~I~IwDl~~~~~  800 (835)
                      .|..+|..+++.
T Consensus       310 ~V~~~~~~~G~~  321 (386)
T 3v65_B          310 SINSANKFTGKN  321 (386)
T ss_dssp             EEEEEETTTCCS
T ss_pred             eEEEEECCCCcc
Confidence            899998655543

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.56  E-value=3.5e-06  Score=102.15  Aligned_cols=236  Identities=10%  Similarity=0.049  Sum_probs=134.0

Q ss_pred             CEEEEEEe-CCCCEEEEEeC-CC----eEEEEEcCCC-eEEE-EeccCCCCeEEEEECCCCCEEEEEECC-----CeEEE
Q 003271          557 KVESCHFS-PDGKLLATGGH-DK----KAVLWCTESF-TVKS-TLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRV  623 (835)
Q Consensus       557 ~V~sl~fS-pdg~~Lasgs~-Dg----~I~VWd~~t~-~~i~-~l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~I  623 (835)
                      .+...+|| |||++||.+.. +|    .|+++|+.++ +.+. .+.   .....++|+||++.|+....|     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            57889999 99998886543 22    5999999998 6321 111   123468899999888877765     36888


Q ss_pred             EecCCCCce-eEEee-cCCCCeEEEEEcCCCCcEEEEEeC--CCcEEEEECCCC--ee-eeEeec----CceEEEEecCC
Q 003271          624 WDTENPDYS-LRTFT-GHSTTVMSLDFHPSKEDLLCSCDN--NSEIRYWSINNG--SC-AGVFKS----GATQMRFQPRL  692 (835)
Q Consensus       624 WDl~t~~~~-~~~~~-~h~~~V~sl~fsp~g~~ll~sgs~--Dg~I~iwDl~s~--~~-~~~~~~----~i~~l~fsp~~  692 (835)
                      +++.++... ...+. ........+.|+|+++.++++...  ...|+++|+.++  +. +..+..    ....+.|+ .+
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~-~g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMH-GT  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEE-TT
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeee-eC
Confidence            888775421 22332 233456788999999988877643  347888999875  22 022221    12233332 26


Q ss_pred             CEEEEEEcC-----CcEEEEECCCCeEEEE-EcCCCC--CeEEEEEcCCCCEEEEE-e-CC--eEEEEEc-------CCC
Q 003271          693 GRILAAAIE-----NYISILDVETQVCRLK-LQGHKN--QVHSVCWNTSGEYLASV-S-DE--LVRVWSI-------GSG  753 (835)
Q Consensus       693 ~~ll~~s~d-----g~I~IwDl~t~~~i~~-l~~h~~--~I~sl~fspdg~~Lasg-s-Dg--~I~IwDl-------~t~  753 (835)
                      +.|+..+..     ..|..+|+.+...... +..+..  .+..+.+.  +..|+.. . ++  .|.++|+       ..+
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~~dl~~~~~~~~~g  408 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR--SNYLVVAGRRAGLTRIWTMMADSQDGVFKAG  408 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC--SSEEEEEEEETTEEEEEEEECCTTTSCCCTT
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE--CCEEEEEEEeCCEEEEEEEecccccccccCC
Confidence            766666543     2677788775211111 222333  34555554  4455444 4 77  4666665       222


Q ss_pred             CCcceEEEeecCC-CceEEEEE----eCCCCE-EEEEEcC---CeEEEEEcCCCcEE
Q 003271          754 SKGECIHELSCTG-NKFHSCVF----HPTFPS-LLVIGCY---ETLELWNMTENKTL  801 (835)
Q Consensus       754 ~~~~~i~~l~~~~-~~V~sv~f----spdg~~-L~sgs~d---g~I~IwDl~~~~~~  801 (835)
                         ..+..+.... ..+..+.+    ++++.. +++.+..   ..|+.+|+.+++..
T Consensus       409 ---~~~~~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~~  462 (751)
T 2xe4_A          409 ---TGLREVVMEEPIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSRT  462 (751)
T ss_dssp             ---TCCEECCCCCSSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCEE
T ss_pred             ---ccceEECCCCceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcEE
Confidence               1023332111 22333322    345544 4444443   37888888877654

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.54  E-value=8.1e-05  Score=81.50  Aligned_cols=227  Identities=9%  Similarity=0.036  Sum_probs=147.1

Q ss_pred             eEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe
Q 003271          600 ITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF  679 (835)
Q Consensus       600 V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~  679 (835)
                      .+|.+..++ .+|+.+ ....|+..++.....  ..+......+..++|++.+..++++-...+.|+.+++........+
T Consensus        36 ~~C~~~~~~-~~ll~~-~~~~I~~i~~~g~~~--~~~~~~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~  111 (349)
T 3v64_C           36 RSCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVV  111 (349)
T ss_dssp             SCEEESSSC-CEEEEE-CBSCEEEECTTSCCE--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEE
T ss_pred             CcccccccC-ceeEee-cccceEEEeCCCCee--EEeecCCCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEE
Confidence            345454453 344433 345588888875442  3333334568899999887778877777889999999876544433


Q ss_pred             e---cCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCC
Q 003271          680 K---SGATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGS  752 (835)
Q Consensus       680 ~---~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t  752 (835)
                      .   .....+++.+.++.|+.+.. .+.|.++++........+...-.....++++|.+.+|+.+.  . +.|..+++..
T Consensus       112 ~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG  191 (349)
T 3v64_C          112 STGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG  191 (349)
T ss_dssp             CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS
T ss_pred             eCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC
Confidence            3   23567999988787777665 57899999886544434443445678999999776666655  4 7888888765


Q ss_pred             CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCc
Q 003271          753 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKC  830 (835)
Q Consensus       753 ~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~-l~~h~~~V~~la~spdg~~LaSgs~DG~  830 (835)
                      ..   ....+.........+++++++..|+.+... +.|..+|+....... +.........|++. .+.++++-...+.
T Consensus       192 ~~---~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~  267 (349)
T 3v64_C          192 SG---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKS  267 (349)
T ss_dssp             CS---CEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTE
T ss_pred             CC---cEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEEE-CCEEEEecCCCCe
Confidence            42   111112234567899999988888887764 589999988654433 33334567788883 4444555444555


Q ss_pred             EEEe
Q 003271          831 VKIW  834 (835)
Q Consensus       831 V~IW  834 (835)
                      |..+
T Consensus       268 V~~~  271 (349)
T 3v64_C          268 INSA  271 (349)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.52  E-value=2.1e-05  Score=92.27  Aligned_cols=251  Identities=9%  Similarity=0.001  Sum_probs=151.3

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC----CeE-E-EEECC--CCC-EEEEEE------CCCeEEEEecCCCCc
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ----WIT-D-VRFSP--SLS-RLATSS------ADRTVRVWDTENPDY  631 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~----~V~-s-v~fsp--dg~-~Latgs------~Dg~I~IWDl~t~~~  631 (835)
                      +..|++++.|+.|..+|.++++.+........    .+. . +....  +++ .|++++      .++.|+.+|..+++.
T Consensus       117 ~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~  196 (582)
T 1flg_A          117 GDKVFFGTLDASVVALNKNTGKVVWKKKFADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEE  196 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECSCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCE
T ss_pred             CCEEEEEeCCCEEEEEECCCCCEEeeecCCCCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCE
Confidence            45778888999999999999999877643221    111 1 11111  233 566654      378999999998875


Q ss_pred             eeEEeecCCC-----------------------------------------CeEEEEEcCCCCcEEEEEe----------
Q 003271          632 SLRTFTGHST-----------------------------------------TVMSLDFHPSKEDLLCSCD----------  660 (835)
Q Consensus       632 ~~~~~~~h~~-----------------------------------------~V~sl~fsp~g~~ll~sgs----------  660 (835)
                      ... ......                                         .-..++++|+...+++..+          
T Consensus       197 ~W~-~~~~~~~~~p~~~~~~~~~g~~g~~~w~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r  275 (582)
T 1flg_A          197 IWM-RPFVEGHMGRLNGKDSTVTGDVKAPSWPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWAR  275 (582)
T ss_dssp             EEE-EESSTTCEEEETTEEEEESSCTTCTTSCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGG
T ss_pred             Eee-cCCCccccccccCcccccccccccccCCCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCccc
Confidence            332 221100                                         0013456666554444332          


Q ss_pred             --C-------C----CcEEEEECCCCeeeeEeecC----------ceEEEEe---cCCC---EEEEEEcCCcEEEEECCC
Q 003271          661 --N-------N----SEIRYWSINNGSCAGVFKSG----------ATQMRFQ---PRLG---RILAAAIENYISILDVET  711 (835)
Q Consensus       661 --~-------D----g~I~iwDl~s~~~~~~~~~~----------i~~l~fs---p~~~---~ll~~s~dg~I~IwDl~t  711 (835)
                        .       |    +.|..+|..+++.+..+...          ...+.+.   .+++   .+++++.+|.++++|.++
T Consensus       276 ~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~t  355 (582)
T 1flg_A          276 TAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSN  355 (582)
T ss_dssp             SCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTT
T ss_pred             ccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCC
Confidence              1       2    68999999999998776531          1122222   3553   677788999999999999


Q ss_pred             CeEEEEEcCCC--CCe-------------------------------------------EEEEEcCCCCEEEEEe-----
Q 003271          712 QVCRLKLQGHK--NQV-------------------------------------------HSVCWNTSGEYLASVS-----  741 (835)
Q Consensus       712 ~~~i~~l~~h~--~~I-------------------------------------------~sl~fspdg~~Lasgs-----  741 (835)
                      ++.+..+....  ...                                           ..++++|+..++++..     
T Consensus       356 G~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~  435 (582)
T 1flg_A          356 GKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKE  435 (582)
T ss_dssp             CCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEE
T ss_pred             CCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcce
Confidence            99887665321  000                                           1235565544444321     


Q ss_pred             -----------------------------CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271          742 -----------------------------DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL  792 (835)
Q Consensus       742 -----------------------------Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I  792 (835)
                                                   +|.|..||+.++   +.+-...... .+....+...+..+++++.|+.|+.
T Consensus       436 ~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG---~~~W~~~~~~-~~~~g~~~tagglvf~g~~dg~l~A  511 (582)
T 1flg_A          436 DYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSG---KVVWEHKEHL-PLWAGVLATAGNLVFTGTGDGYFKA  511 (582)
T ss_dssp             EEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTC---CEEEEEEESS-CCCSCCEEETTTEEEEECTTSEEEE
T ss_pred             eeecccccccCCCceeccceeecCCCCCCcceEEEEECCCC---CEEEEecCCC-CCcccceEeCCCEEEEECCCCcEEE
Confidence                                         467889999888   4444433221 2222222234667888999999999


Q ss_pred             EEcCCCcEE-EeccCCCCee--EEEEeCCCCEEE
Q 003271          793 WNMTENKTL-TLSAHDKLVS--SLAASTVNGMVA  823 (835)
Q Consensus       793 wDl~~~~~~-~l~~h~~~V~--~la~spdg~~La  823 (835)
                      ||.++++.+ .+.. ...+.  -+.|..+|+.++
T Consensus       512 ~D~~tG~~lW~~~~-~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          512 FDAKSGKELWKFQT-GSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             EETTTCCEEEEEEC-SSCCCSCCEEEEETTEEEE
T ss_pred             EECCCCCEEEEecC-CCCcccCceEEEECCEEEE
Confidence            999999988 3332 22232  266667887333

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.51  E-value=2.2e-05  Score=88.59  Aligned_cols=231  Identities=10%  Similarity=0.087  Sum_probs=140.3

Q ss_pred             CeEEEEECC-CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC----cEEEEECCCC
Q 003271          599 WITDVRFSP-SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS----EIRYWSINNG  673 (835)
Q Consensus       599 ~V~sv~fsp-dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg----~I~iwDl~s~  673 (835)
                      ....|+|+| ++..|+++...+.|+++|+....  +..+.........|+|+++++.++++...++    .+.+++.. +
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~--v~~~~~~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~-g  214 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEY--VSTVYSGLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRE-S  214 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTE--EEEEECCCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGG-G
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCE--EEEEecCCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCC-C
Confidence            457889998 45566666665889999988654  3444445567889999999886776665333    34444433 2


Q ss_pred             eee--eEe--ecCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe--CCeE
Q 003271          674 SCA--GVF--KSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELV  745 (835)
Q Consensus       674 ~~~--~~~--~~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs--Dg~I  745 (835)
                      ...  ..+  ......++++|+++.|+++. .++.|..||...+....... +.......++|+|+|++|+.+.  .+.|
T Consensus       215 ~~~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I  294 (430)
T 3tc9_A          215 GFKVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYI  294 (430)
T ss_dssp             TSCSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEE
T ss_pred             ceeeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEE
Confidence            221  122  23467788999555566655 46889999998776522222 2234577899999999666665  7799


Q ss_pred             EEEEcCCCCC-cceEEEeecC---------------CCceE-EEEEe--------CCCCEEEEEEc-CCeEEEEEcCCCc
Q 003271          746 RVWSIGSGSK-GECIHELSCT---------------GNKFH-SCVFH--------PTFPSLLVIGC-YETLELWNMTENK  799 (835)
Q Consensus       746 ~IwDl~t~~~-~~~i~~l~~~---------------~~~V~-sv~fs--------pdg~~L~sgs~-dg~I~IwDl~~~~  799 (835)
                      .+++...... ...+..+.+.               -.... .+++.        +++. |+++.. .+.|+.++ .++.
T Consensus       295 ~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~-lyvaD~~n~~I~~i~-~~G~  372 (430)
T 3tc9_A          295 LRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYD-FYFCDRENHCIRILT-PQGR  372 (430)
T ss_dssp             EEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEE-EEEEEGGGTEEEEEC-TTSE
T ss_pred             EEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCe-EEEEECCCcEEEEEC-CCCc
Confidence            9988764210 0011122111               11123 45553        2344 555544 56899998 4566


Q ss_pred             EEEeccC---------C---------CCeeEEEEeCC-CCEEEEEECCCcEEEe
Q 003271          800 TLTLSAH---------D---------KLVSSLAASTV-NGMVASASHDKCVKIW  834 (835)
Q Consensus       800 ~~~l~~h---------~---------~~V~~la~spd-g~~LaSgs~DG~V~IW  834 (835)
                      ...+.+.         .         .....|+++++ +.++++-....+|+.+
T Consensus       373 v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  426 (430)
T 3tc9_A          373 VTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKI  426 (430)
T ss_dssp             EEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEE
Confidence            5544322         1         25789999995 5555555556677765

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.50  E-value=8.4e-05  Score=82.54  Aligned_cols=226  Identities=9%  Similarity=0.041  Sum_probs=148.7

Q ss_pred             EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee
Q 003271          601 TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (835)
Q Consensus       601 ~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~  680 (835)
                      .|.+..+. .+|+.+ ....|+.+++.....  ..+......+..++|++.+..++++-...+.|+.+++........+.
T Consensus        80 ~C~~~~~~-~~l~~~-~~~~I~~i~~~~~~~--~~~~~~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~  155 (386)
T 3v65_B           80 SCKALGPE-PVLLFA-NRIDIRQVLPHRSEY--TLLLNNLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVS  155 (386)
T ss_dssp             CEEECSSC-CEEEEE-CBSCEEEECTTSCCC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEEC
T ss_pred             eECCcccc-ceeEee-cCccceeeccCCCcE--EEEecCCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEe
Confidence            34444443 344443 345688888876543  33333445688999998877788777778899999998765444433


Q ss_pred             c---CceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCC
Q 003271          681 S---GATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSG  753 (835)
Q Consensus       681 ~---~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~  753 (835)
                      .   ....+++++.++.|+.+.. .+.|.++++........+.........++++|.+.+|+.+.  . +.|..+++...
T Consensus       156 ~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~  235 (386)
T 3v65_B          156 TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGS  235 (386)
T ss_dssp             SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCC
Confidence            2   3567899988787777665 57888888876544444444446678999999777766665  4 68888887654


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                      .   ..............++|+|++..|+++... +.|+.+|+...... .+.........|++. .+.++++-...+.|
T Consensus       236 ~---~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav~-~~~ly~td~~~~~V  311 (386)
T 3v65_B          236 G---RRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITVF-EDSLYWTDWHTKSI  311 (386)
T ss_dssp             S---CEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred             C---cEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEEE-CCEEEEeeCCCCeE
Confidence            2   222222334567899999988888877664 58999998765443 233334567788883 44455555555666


Q ss_pred             EEe
Q 003271          832 KIW  834 (835)
Q Consensus       832 ~IW  834 (835)
                      ..+
T Consensus       312 ~~~  314 (386)
T 3v65_B          312 NSA  314 (386)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            554

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.50  E-value=0.00021  Score=76.97  Aligned_cols=217  Identities=9%  Similarity=0.020  Sum_probs=140.8

Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEee---cCc
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK---SGA  683 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s----~~~~~~~~---~~i  683 (835)
                      +|+.+. ...|+..|+.+... ...+ .....+..++|++.+..++++-..++.|..+++..    ......+.   ...
T Consensus         3 ~ll~~~-~~~I~~i~~~~~~~-~~~~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p   79 (316)
T 1ijq_A            3 YLFFTN-RHEVRKMTLDRSEY-TSLI-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (316)
T ss_dssp             EEEEEC-BSSEEEEETTSCCC-EEEE-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEEC-CCeEEEEECCCcce-Eehh-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCc
Confidence            344443 35689999987654 2333 34456889999998777887877789999999876    22222232   235


Q ss_pred             eEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCcceE
Q 003271          684 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI  759 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~~~~~~i  759 (835)
                      ..+++++.++.|+++.. .+.|.++|+........+.........++++|.+.+|+.+.  . +.|..+++...   ...
T Consensus        80 ~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~---~~~  156 (316)
T 1ijq_A           80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY  156 (316)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred             CEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCC---CeE
Confidence            78899987777777654 68899999986544444443445778999998766665555  3 68888887543   111


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          760 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLS---AHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       760 ~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~---~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ......-.....+++++++..|+.+... +.|..+|+.......+.   ........|++. .+.++++-...+.|..+
T Consensus       157 ~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~  234 (316)
T 1ijq_A          157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  234 (316)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEE
Confidence            1122234567899999988888887754 59999999865443322   223456788885 35555555555666654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.46  E-value=1.1e-05  Score=84.14  Aligned_cols=175  Identities=7%  Similarity=0.016  Sum_probs=122.0

Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-ecCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEEc
Q 003271          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-KSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQ  719 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~  719 (835)
                      ....|.|+  ++.++++.+.+|.|+++|+.+++.+..+ ........+.+.++.|+... .++.+.+||..+.+.+.++.
T Consensus        56 ftqGL~~~--~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~  133 (268)
T 3nok_A           56 FTQGLVFH--QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTR  133 (268)
T ss_dssp             CEEEEEEE--TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEE
T ss_pred             ccceEEEE--CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCcceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEe
Confidence            45788887  3578888888999999999999887765 22233333455566666665 46899999999999999887


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec--CC---CceEEEEEeCCCCEEEEEE-cCCeEEE
Q 003271          720 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC--TG---NKFHSCVFHPTFPSLLVIG-CYETLEL  792 (835)
Q Consensus       720 ~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~--~~---~~V~sv~fspdg~~L~sgs-~dg~I~I  792 (835)
                      .... -..++  +++..|+.+. ++.|.++|..+.   +.+..+..  ..   ..++.+.|. +|. |++.. .++.|.+
T Consensus       134 ~~~e-GwGLt--~Dg~~L~vSdGs~~l~~iDp~T~---~v~~~I~V~~~g~~v~~lNeLe~~-dG~-lyanvw~s~~I~v  205 (268)
T 3nok_A          134 YSGE-GWGLC--YWNGKLVRSDGGTMLTFHEPDGF---ALVGAVQVKLRGQPVELINELECA-NGV-IYANIWHSSDVLE  205 (268)
T ss_dssp             CSSC-CCCEE--EETTEEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTCSEEEE
T ss_pred             CCCc-eeEEe--cCCCEEEEECCCCEEEEEcCCCC---eEEEEEEeCCCCcccccccccEEe-CCE-EEEEECCCCeEEE
Confidence            4322 23444  5677777776 889999999887   44444433  22   234667776 664 66655 4679999


Q ss_pred             EEcCCCcEEEecc--------------CCCCeeEEEEeCCCCEEEEEE
Q 003271          793 WNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       793 wDl~~~~~~~l~~--------------h~~~V~~la~spdg~~LaSgs  826 (835)
                      .|..+++++....              -.+..+.|+|+|+++.|+..+
T Consensus       206 IDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          206 IDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             ECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            9999999873221              124678999999776444444

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.46  E-value=0.0003  Score=78.43  Aligned_cols=227  Identities=8%  Similarity=-0.035  Sum_probs=149.5

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCC---ceeEEeecCCCCeE
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD---YSLRTFTGHSTTVM  644 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~  644 (835)
                      +|+.+. ...|+..+++.......+. ....+..|+|++....|+.+. ..+.|+.+++....   .....+........
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~  162 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  162 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred             eeEEec-cceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence            555444 4789999988765554443 445688999998655555554 56889999987521   11233333445678


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEEc
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQ  719 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l~  719 (835)
                      .|++.+.+..++++-...+.|.+.++........+..   ....++++|.++.|+.+..  .+.|..+++........+.
T Consensus       163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEEC
T ss_pred             cEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEE
Confidence            8999987677887877788999999986654444432   2678999998888888774  3689999987654443444


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcC
Q 003271          720 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMT  796 (835)
Q Consensus       720 ~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~  796 (835)
                      ..-.....|++++++..|+.+.  .+.|..+|+..... ..+............+++.  +..|+.+.. .+.|..+|..
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~l~~P~gl~v~--~~~lywtd~~~~~V~~~~~~  319 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  319 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCC-EEEEECSSTTSSEEEEEEE--TTEEEEEESSSCSEEEEESS
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCcc-EEEEeCCCCCCCCEEEEEe--CCEEEEecCCCCeEEEEEcC
Confidence            3446788999998888777776  67999999875422 2222222223445667763  335555554 4589999866


Q ss_pred             CCcE
Q 003271          797 ENKT  800 (835)
Q Consensus       797 ~~~~  800 (835)
                      +++.
T Consensus       320 ~G~~  323 (400)
T 3p5b_L          320 TGSD  323 (400)
T ss_dssp             SCCC
T ss_pred             CCCc
Confidence            6643

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.46  E-value=4.1e-05  Score=79.06  Aligned_cols=176  Identities=10%  Similarity=0.067  Sum_probs=121.6

Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEE
Q 003271          641 TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAI-ENYISILDVETQVCR  715 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i  715 (835)
                      .....+.|++  ..++.+.+.+|  .|+.+|+.+++.+..+..+  .....+...++.++.... ++.+.+||..+.+.+
T Consensus        21 ~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~   98 (243)
T 3mbr_X           21 AFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPR   98 (243)
T ss_dssp             CCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEETTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEE
Confidence            4466899986  45777777654  8999999999998877633  333444445677777664 689999999999999


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC--C---CceEEEEEeCCCCEEEEEE-cCC
Q 003271          716 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--G---NKFHSCVFHPTFPSLLVIG-CYE  788 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~--~---~~V~sv~fspdg~~L~sgs-~dg  788 (835)
                      .++...... ..++  +++..|+.+. ++.|.++|..+.   +.+.++...  .   ..++.+.|. +|. |++.. .++
T Consensus        99 ~ti~~~~~G-wglt--~dg~~L~vSdgs~~l~~iDp~t~---~~~~~I~V~~~g~~~~~lNeLe~~-~G~-lyanvw~s~  170 (243)
T 3mbr_X           99 ARFRYPGEG-WALT--SDDSHLYMSDGTAVIRKLDPDTL---QQVGSIKVTAGGRPLDNLNELEWV-NGE-LLANVWLTS  170 (243)
T ss_dssp             EEEECSSCC-CEEE--ECSSCEEEECSSSEEEEECTTTC---CEEEEEECEETTEECCCEEEEEEE-TTE-EEEEETTTT
T ss_pred             EEEeCCCCc-eEEe--eCCCEEEEECCCCeEEEEeCCCC---eEEEEEEEccCCcccccceeeEEe-CCE-EEEEECCCC
Confidence            988743322 3555  4566565555 889999999887   444444332  1   344566665 554 55555 567


Q ss_pred             eEEEEEcCCCcEEEecc--------------CCCCeeEEEEeCCCCEEEEEE
Q 003271          789 TLELWNMTENKTLTLSA--------------HDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       789 ~I~IwDl~~~~~~~l~~--------------h~~~V~~la~spdg~~LaSgs  826 (835)
                      .|.+.|..+++++....              -.+..+.|+++|+++.|+..+
T Consensus       171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            99999999999873211              124678999999877665554

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.45  E-value=7.8e-05  Score=80.58  Aligned_cols=224  Identities=8%  Similarity=0.007  Sum_probs=143.2

Q ss_pred             EEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCE-EEEEECCCeEEEEecCCCCceeEEeecCCCCeEE
Q 003271          569 LLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSR-LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMS  645 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~-Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~s  645 (835)
                      +|+.+. ...|+.++++...  ....+. ....+..++|++.... +++-...+.|..+++.........+...-.....
T Consensus         6 ~ll~~~-~~~I~~i~l~~~~~~~~~~~~-~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~g   83 (318)
T 3sov_A            6 LLLYAN-RRDLRLVDATNGKENATIVVG-GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDG   83 (318)
T ss_dssp             EEEEEC-EEEEEEEETTCTTSCCEEEEE-EEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCE
T ss_pred             EEEEEc-cCeEEEEECCCCceEEEEEec-CCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccE
Confidence            344433 4678899987653  222222 2235678999986444 4454557889999988653212222223345678


Q ss_pred             EEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEEcC
Q 003271          646 LDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQG  720 (835)
Q Consensus       646 l~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l~~  720 (835)
                      +++.+.+..++++-...+.|.++++........+.   .....++++|.++.++.+..  .+.|..+++........+..
T Consensus        84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~  163 (318)
T 3sov_A           84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINS  163 (318)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECS
T ss_pred             EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEEC
Confidence            99988777788777778899999987543332222   23678999998888888774  47899888874433323333


Q ss_pred             CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCC
Q 003271          721 HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTE  797 (835)
Q Consensus       721 h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~  797 (835)
                      .-.....|+|++++..|+.+.  .+.|..+|+..... ..+  ..........+++..  ..++.+. ..+.|..++..+
T Consensus       164 ~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~-~~~--~~~~~~~P~glav~~--~~lywtd~~~~~V~~~~~~~  238 (318)
T 3sov_A          164 EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNR-QAV--VKGSLPHPFALTLFE--DILYWTDWSTHSILACNKYT  238 (318)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEE--ECSCCSCEEEEEEET--TEEEEEETTTTEEEEEETTT
T ss_pred             CCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCce-EEE--ecCCCCCceEEEEeC--CEEEEEecCCCeEEEEECCC
Confidence            345678999999877777766  67999999875321 222  222345567777753  3455554 456899999866


Q ss_pred             Cc
Q 003271          798 NK  799 (835)
Q Consensus       798 ~~  799 (835)
                      ++
T Consensus       239 G~  240 (318)
T 3sov_A          239 GE  240 (318)
T ss_dssp             CC
T ss_pred             CC
Confidence            65

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.44  E-value=0.00021  Score=77.38  Aligned_cols=275  Identities=8%  Similarity=-0.012  Sum_probs=154.6

Q ss_pred             CCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec----cCCCCeEEEEECCCCCEEEEEE
Q 003271          541 KGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE----EHTQWITDVRFSPSLSRLATSS  616 (835)
Q Consensus       541 ~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~----~h~~~V~sv~fspdg~~Latgs  616 (835)
                      .+.++..+. + .....+.+|.|.+++..+++ +.+|.|. ...+.++.-..+.    .....+.+|.|.+ +. ++.++
T Consensus        23 ~g~~W~~~~-~-~~~~~~~~v~~~~~~~~~~~-G~~g~i~-~s~DgG~tW~~~~~~~~~~~~~~~~i~~~~-~~-~~~~g   96 (327)
T 2xbg_A           23 DYNPWEAIQ-L-PTTATILDMSFIDRHHGWLV-GVNATLM-ETRDGGQTWEPRTLVLDHSDYRFNSVSFQG-NE-GWIVG   96 (327)
T ss_dssp             SSCCEEEEE-C-SCSSCEEEEEESSSSCEEEE-ETTTEEE-EESSTTSSCEECCCCCSCCCCEEEEEEEET-TE-EEEEE
T ss_pred             CCCCceEee-c-CCCCcEEEEEECCCCcEEEE-cCCCeEE-EeCCCCCCCeECCCCCCCCCccEEEEEecC-Ce-EEEEE
Confidence            345555544 2 33457999999888877774 4567653 3344333222221    2244688999976 34 44455


Q ss_pred             CCCeEEEEecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe----ecCceEEEEe
Q 003271          617 ADRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF----KSGATQMRFQ  689 (835)
Q Consensus       617 ~Dg~I~IWDl~t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~----~~~i~~l~fs  689 (835)
                      .++.|.. ..+.++ ......   .+...+..|.+.+++. +++++ .++.|+. ....++.-...    ...+..+.+.
T Consensus        97 ~~g~i~~-S~DgG~-tW~~~~~~~~~~~~~~~i~~~~~~~-~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~  171 (327)
T 2xbg_A           97 EPPIMLH-TTDGGQ-SWSQIPLDPKLPGSPRLIKALGNGS-AEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRS  171 (327)
T ss_dssp             ETTEEEE-ESSTTS-SCEECCCCTTCSSCEEEEEEEETTE-EEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEEC
T ss_pred             CCCeEEE-ECCCCC-CceECccccCCCCCeEEEEEECCCC-EEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEc
Confidence            6664443 222222 122222   2334577888776643 55444 3555432 22223322222    2346778888


Q ss_pred             cCCCEEEEEEcCCcEEEE-EC--CCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec--
Q 003271          690 PRLGRILAAAIENYISIL-DV--ETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC--  764 (835)
Q Consensus       690 p~~~~ll~~s~dg~I~Iw-Dl--~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~--  764 (835)
                      +++..++ ++.++.++.- |-  .+.+.+.  ......+..+.+.+++.+++++.+|.+++.+...+   .....+..  
T Consensus       172 ~~~~~~~-~g~~G~~~~S~d~gG~tW~~~~--~~~~~~~~~~~~~~~g~~~~~~~~G~~~~s~~D~G---~tW~~~~~~~  245 (327)
T 2xbg_A          172 PSGEYVA-VSSRGSFYSTWEPGQTAWEPHN--RTTSRRLHNMGFTPDGRLWMIVNGGKIAFSDPDNS---ENWGELLSPL  245 (327)
T ss_dssp             TTSCEEE-EETTSSEEEEECTTCSSCEEEE--CCSSSCEEEEEECTTSCEEEEETTTEEEEEETTEE---EEECCCBCTT
T ss_pred             CCCcEEE-EECCCcEEEEeCCCCCceeECC--CCCCCccceeEECCCCCEEEEeCCceEEEecCCCC---CeeEeccCCc
Confidence            8766554 4455555544 42  3444442  23556788999999998887777888877643222   21111211  


Q ss_pred             --CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE-ec---cCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          765 --TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT-LS---AHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       765 --~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~-l~---~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        ....+..+++.+++. +++++.++.| ++..+.++.-. +.   .+...+.++.|.+++ .++.++.+|.|.-++
T Consensus       246 ~~~~~~~~~v~~~~~~~-~~~~g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          246 RRNSVGFLDLAYRTPNE-VWLAGGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             SSCCSCEEEEEESSSSC-EEEEESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             ccCCcceEEEEecCCCE-EEEEeCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence              223588899988776 4555567766 44555555432 32   234678899997554 466777889887654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.39  E-value=0.00011  Score=82.85  Aligned_cols=233  Identities=10%  Similarity=0.116  Sum_probs=142.3

Q ss_pred             CEEEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCC
Q 003271          557 KVESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD  630 (835)
Q Consensus       557 ~V~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~  630 (835)
                      ....++|+| ++..|+++...+.|+++|.+++....... .......|+|++++++|+++...     ..+.+++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            457899998 45566666655889999998876554443 45568899999999977766652     134444433221


Q ss_pred             ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEc-CCcEE
Q 003271          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAI-ENYIS  705 (835)
Q Consensus       631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~-dg~I~  705 (835)
                      .....+.. ......++++|++..++++-..++.|+.|+...+.......    .....++|+|++++++++.. .+.|.
T Consensus       217 ~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~  295 (430)
T 3tc9_A          217 KVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYIL  295 (430)
T ss_dssp             CSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEE
T ss_pred             eeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEE
Confidence            11122222 23467788999555677777678899999998776533322    23668999999997777664 57888


Q ss_pred             EEECCC--CeE--EEEEcCC---------------CCCeE-EEEEc--------CCCCEEEEEe-CCeEEEEEcCCCCCc
Q 003271          706 ILDVET--QVC--RLKLQGH---------------KNQVH-SVCWN--------TSGEYLASVS-DELVRVWSIGSGSKG  756 (835)
Q Consensus       706 IwDl~t--~~~--i~~l~~h---------------~~~I~-sl~fs--------pdg~~Lasgs-Dg~I~IwDl~t~~~~  756 (835)
                      .++...  +..  +..+.+.               -.... .++..        ++|.++++-. .+.|+.++. .+   
T Consensus       296 ~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G---  371 (430)
T 3tc9_A          296 RSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QG---  371 (430)
T ss_dssp             EEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TS---
T ss_pred             EEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CC---
Confidence            887653  221  1111111               01122 45543        3455555544 678888873 33   


Q ss_pred             ceEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEEcC
Q 003271          757 ECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT  796 (835)
Q Consensus       757 ~~i~~l~~~------------------~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~  796 (835)
                       .+..+.+.                  -.....+++++++..|+++.. .+.|+.++++
T Consensus       372 -~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          372 -RVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             -EEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             -cEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence             22222221                  125788999996555666654 4588888764

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.38  E-value=0.00082  Score=70.06  Aligned_cols=200  Identities=11%  Similarity=0.072  Sum_probs=137.0

Q ss_pred             EEecCCCCCEEEEEEeCCCCE-EEEEeCCCeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          549 QLIPASTSKVESCHFSPDGKL-LATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~-Lasgs~Dg~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      +.+.+-.+.+..++|+|++.. +++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISL   98 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEE
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEc
Confidence            577787788999999997664 5557788999999998 888877632 2246788999988877676656789999998


Q ss_pred             CCCCc--eeEEee------cCCCCeEEEEEcCCCCcEEEEEeCCC-cEEEEEC-CCCeeeeEe----------ecCceEE
Q 003271          627 ENPDY--SLRTFT------GHSTTVMSLDFHPSKEDLLCSCDNNS-EIRYWSI-NNGSCAGVF----------KSGATQM  686 (835)
Q Consensus       627 ~t~~~--~~~~~~------~h~~~V~sl~fsp~g~~ll~sgs~Dg-~I~iwDl-~s~~~~~~~----------~~~i~~l  686 (835)
                      .....  .+....      ..+.....|+|+|.++.++++...+. .|+.|+- .....+...          ......+
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l  178 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGA  178 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeE
Confidence            76542  112221      23455789999999887877666554 5666651 111112222          1247889


Q ss_pred             EEecCCCEEEEEEcC-CcEEEEECCCCeEEEEEcCCC---------CCeEEEEEcCCCCEEEEEeCCeEEEEEc
Q 003271          687 RFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHK---------NQVHSVCWNTSGEYLASVSDELVRVWSI  750 (835)
Q Consensus       687 ~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~---------~~I~sl~fspdg~~LasgsDg~I~IwDl  750 (835)
                      +++|..+.+++.+.+ ..|.++|... +.+..+.-..         .....|+|.++|++++++-.+.+++|.-
T Consensus       179 ~~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvsE~n~~y~f~~  251 (255)
T 3qqz_A          179 EFNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVSEPNRFYRFTP  251 (255)
T ss_dssp             EEETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEETTTEEEEEEC
T ss_pred             EEcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEcCCceEEEEEe
Confidence            999998888887765 6788888764 4444433221         2568999999999666654667776653

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.34  E-value=0.00049  Score=76.73  Aligned_cols=217  Identities=9%  Similarity=0.023  Sum_probs=143.4

Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEee---cCc
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK---SGA  683 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~---~~i  683 (835)
                      +|+.+. ...|+..++.....  ..+......+..|+|++.+..++++-...+.|+.+++...    .....+.   ...
T Consensus        85 ~ll~~~-~~~I~~i~l~~~~~--~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p  161 (400)
T 3p5b_L           85 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  161 (400)
T ss_dssp             EEEEEE-TTEEEEECTTSCSC--EEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCE
T ss_pred             eeEEec-cceeEEEccCCcce--eEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCc
Confidence            444443 46799999887653  3333445678999999987778877777889999998752    2222232   235


Q ss_pred             eEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceE
Q 003271          684 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI  759 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i  759 (835)
                      ..+++.+.++.|+.+.. .+.|.+++++.......+.........|+++|.+.+|+...   .+.|...++....   ..
T Consensus       162 ~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~---~~  238 (400)
T 3p5b_L          162 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD---IY  238 (400)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS---CE
T ss_pred             ccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc---cE
Confidence            67899987777777765 57899999987655555544455688999999776666655   3688888886542   22


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          760 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       760 ~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~---h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ..+...-.....+++++++..|+.+... +.|..+|++......+..   .-....+|++. .+.++++-...+.|..+
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~  316 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSA  316 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEE
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEE
Confidence            2223334678999999988888888764 589999997665443322   23455677774 33455555555666554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.32  E-value=0.00015  Score=81.84  Aligned_cols=232  Identities=13%  Similarity=0.109  Sum_probs=139.2

Q ss_pred             CeEEEEECCC--CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC---C-cEEEEECCC
Q 003271          599 WITDVRFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN---S-EIRYWSINN  672 (835)
Q Consensus       599 ~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D---g-~I~iwDl~s  672 (835)
                      ....|+|+|+  ...|+.+...+.|+.+|..++.  +..+........+|+|+++++ ++++....   . .+..++...
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~--v~~~~~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQY--VDIKTTNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTE--EEEECCCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGG
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCE--EEEeecCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCC
Confidence            4568999984  4455555544889999987654  444444556689999999988 66555421   1 233333322


Q ss_pred             Cee-eeEe--ecCceEEEEecCCCEEEEEE-cCCcEEEEECCCCeEEEEE-c-CCCCCeEEEEEcCCCCEEEEEe--CCe
Q 003271          673 GSC-AGVF--KSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKL-Q-GHKNQVHSVCWNTSGEYLASVS--DEL  744 (835)
Q Consensus       673 ~~~-~~~~--~~~i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~~i~~l-~-~h~~~I~sl~fspdg~~Lasgs--Dg~  744 (835)
                      +.. ...+  ......++++++++.|+++. .++.|+.+|..++.....+ . +.......++|+|++++|+.+.  .+.
T Consensus       217 ~~~~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          217 GFTERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TTCCEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             CeeccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            111 0111  13356788999555566555 4678999999877652222 2 1222345799999999666665  679


Q ss_pred             EEEEEcCCCCC-cceEEEeecC---------------CCceEEEEE---------eCCCCEEEEEEcCCeEEEEEcCCCc
Q 003271          745 VRVWSIGSGSK-GECIHELSCT---------------GNKFHSCVF---------HPTFPSLLVIGCYETLELWNMTENK  799 (835)
Q Consensus       745 I~IwDl~t~~~-~~~i~~l~~~---------------~~~V~sv~f---------spdg~~L~sgs~dg~I~IwDl~~~~  799 (835)
                      |+.+++..... ......+.+.               -.....+++         .+++.++++-...+.|+.++. ++.
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~  375 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGR  375 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSE
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCC
Confidence            99988763211 0111111111               123567888         566654444444569999985 555


Q ss_pred             EEEeccC------------------CCCeeEEEEe-CCCCEEEEEECCCcEEEe
Q 003271          800 TLTLSAH------------------DKLVSSLAAS-TVNGMVASASHDKCVKIW  834 (835)
Q Consensus       800 ~~~l~~h------------------~~~V~~la~s-pdg~~LaSgs~DG~V~IW  834 (835)
                      +..+.+.                  -.....|+++ +++.++++-...++|+.+
T Consensus       376 v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i  429 (433)
T 4hw6_A          376 VTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKI  429 (433)
T ss_dssp             EEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEE
T ss_pred             EEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEE
Confidence            5544322                  1237789999 566666665566677765

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.31  E-value=0.00037  Score=75.26  Aligned_cols=214  Identities=9%  Similarity=0.021  Sum_probs=138.8

Q ss_pred             CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee-eEee---cCceEEEEecCC
Q 003271          617 ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA-GVFK---SGATQMRFQPRL  692 (835)
Q Consensus       617 ~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~-~~~~---~~i~~l~fsp~~  692 (835)
                      ....|+.++++...............+..++|++.+..++++-...+.|..+++...... ..+.   .....+++.+.+
T Consensus        11 ~~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~   90 (318)
T 3sov_A           11 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLG   90 (318)
T ss_dssp             CEEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTT
T ss_pred             ccCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCC
Confidence            356799999987642122222222457789999877778877777889999999865321 1222   246679999877


Q ss_pred             CEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271          693 GRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELSCTGNK  768 (835)
Q Consensus       693 ~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~~~~~~  768 (835)
                      +.|+.+.. .+.|.++++........+.........++++|.+.+|+.+.   .+.|..+++....   ........-..
T Consensus        91 g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~---~~~~~~~~l~~  167 (318)
T 3sov_A           91 EKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSS---RFIIINSEIYW  167 (318)
T ss_dssp             TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCS---CEEEECSSCSC
T ss_pred             CeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCC---eEEEEECCCCC
Confidence            77777664 57899999876543333434456678999998766666555   4688888876431   11112223456


Q ss_pred             eEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEe-ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          769 FHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTL-SAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       769 V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l-~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ...+++++++..|+.+... +.|+.+|+.......+ .........+++.. +.++++-...+.|..+
T Consensus       168 Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~~~  234 (318)
T 3sov_A          168 PNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSILAC  234 (318)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             ccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEEEE
Confidence            7899999988888887764 5899999976544433 22445567788753 3445554445556544

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.29  E-value=0.00052  Score=83.15  Aligned_cols=227  Identities=7%  Similarity=-0.033  Sum_probs=148.3

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCCeEEEEecCCCC---ceeEEeecCCCCeE
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPD---YSLRTFTGHSTTVM  644 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~  644 (835)
                      +|+.+. ...|+..++........+. ....+..|+|.+....|+ +-...+.|+.+++....   .....+........
T Consensus       397 ~Ll~an-~~~Ir~i~l~~~~~~~l~~-~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~  474 (791)
T 3m0c_C          397 YLFFTN-RHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD  474 (791)
T ss_dssp             EEEEEC-BSSEEEECTTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             cccccc-ccceeEeeccCCcceeeec-CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc
Confidence            444443 4578888887665544443 345678999998555544 44556789999987531   11233332445677


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEc
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ  719 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~  719 (835)
                      .|++.+.++.|+++-...+.|.+.++........+..   ....|+++|.+++|+.+...  +.|.+.++........+.
T Consensus       475 GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~  554 (791)
T 3m0c_C          475 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  554 (791)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEe
Confidence            8999988888888888889999999986544333332   36789999998888887753  679999987655544454


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcC
Q 003271          720 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMT  796 (835)
Q Consensus       720 ~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~  796 (835)
                      ..-.....|++++.+..|+.+.  .+.|.++++..... ..+......-.....|++.  +.+|+++... +.|...|..
T Consensus       555 ~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~-~~v~~~~~~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~  631 (791)
T 3m0c_C          555 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  631 (791)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             CCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCce-EEEecCCCccCCCCEEEEe--CCEEEEEECCCCEEEEEeCC
Confidence            4446788999998777777776  66899999865422 2222111122344566664  3467766654 588888876


Q ss_pred             CCcE
Q 003271          797 ENKT  800 (835)
Q Consensus       797 ~~~~  800 (835)
                      +++.
T Consensus       632 tG~~  635 (791)
T 3m0c_C          632 TGSD  635 (791)
T ss_dssp             TCCC
T ss_pred             CCcc
Confidence            6643

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.29  E-value=0.0002  Score=74.73  Aligned_cols=197  Identities=11%  Similarity=0.150  Sum_probs=128.9

Q ss_pred             EeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECC
Q 003271          635 TFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVE  710 (835)
Q Consensus       635 ~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~  710 (835)
                      .+.+-...+..++|+|+++.++++...++.|...|.. ++.++.+.    .....+++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4445556799999999988888888889999999998 88877764    246778888776554544456789999876


Q ss_pred             CCeE---EEEEc------CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-------cCCCceEEEE
Q 003271          711 TQVC---RLKLQ------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-------CTGNKFHSCV  773 (835)
Q Consensus       711 t~~~---i~~l~------~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-------~~~~~V~sv~  773 (835)
                      ....   +....      ........|+|+|.+..|+++. .+...||.+........+..+.       .....+..++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            5432   22221      1344568999999987777766 3344455443110001111111       1234578999


Q ss_pred             EeCCCCEEEEEEcC-CeEEEEEcCCCcEE---Eecc-C------CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          774 FHPTFPSLLVIGCY-ETLELWNMTENKTL---TLSA-H------DKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       774 fspdg~~L~sgs~d-g~I~IwDl~~~~~~---~l~~-h------~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ++|....|++.+.. ..|.++|.... ++   .+.. .      -.....|+|.++|+++++ +.-..+++|
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIv-sE~n~~y~f  249 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIV-SEPNRFYRF  249 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEE-ETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEE-cCCceEEEE
Confidence            99987777766665 48899997755 44   2321 1      125689999999986555 666655554

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.28  E-value=0.00023  Score=80.26  Aligned_cols=232  Identities=10%  Similarity=0.056  Sum_probs=141.3

Q ss_pred             CEEEEEEeCC--CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC-----eEEEEecCCC
Q 003271          557 KVESCHFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR-----TVRVWDTENP  629 (835)
Q Consensus       557 ~V~sl~fSpd--g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg-----~I~IWDl~t~  629 (835)
                      ...+++|+++  +..|+.+...+.|+.+|..++.....+. ......+|+|+++++ |+.+...+     .+..++....
T Consensus       140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~  217 (433)
T 4hw6_A          140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASG  217 (433)
T ss_dssp             CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGT
T ss_pred             CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCC
Confidence            4678999984  4455555544899999998877665543 445688999999999 55444321     2333333322


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee-Eeec----CceEEEEecCCCEEEEEEc-CCc
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG-VFKS----GATQMRFQPRLGRILAAAI-ENY  703 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~-~~~~----~i~~l~fsp~~~~ll~~s~-dg~  703 (835)
                      ......+. .......++++|++..++++-..++.|+.+|..++.... .+..    ....++|+|+++.|+++.. .+.
T Consensus       218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~  296 (433)
T 4hw6_A          218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHC  296 (433)
T ss_dssp             TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTE
T ss_pred             eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCE
Confidence            11111222 234456788999545577666677899999998776622 2221    1346999999997777765 578


Q ss_pred             EEEEECC--CCeE--EEEEcCC---------------CCCeEEEEE---------cCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271          704 ISILDVE--TQVC--RLKLQGH---------------KNQVHSVCW---------NTSGEYLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       704 I~IwDl~--t~~~--i~~l~~h---------------~~~I~sl~f---------spdg~~Lasgs-Dg~I~IwDl~t~~  754 (835)
                      |+.++..  ++..  ...+.+.               -.....+++         .++|.++++-. .+.|++++. ++ 
T Consensus       297 I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G-  374 (433)
T 4hw6_A          297 IYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EG-  374 (433)
T ss_dssp             EEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TS-
T ss_pred             EEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CC-
Confidence            9998865  2211  1111111               123567888         67777666655 678999874 32 


Q ss_pred             CcceEEEeecC------------------CCceEEEEEeCCCCEEEEEEc-CCeEEEEEcC
Q 003271          755 KGECIHELSCT------------------GNKFHSCVFHPTFPSLLVIGC-YETLELWNMT  796 (835)
Q Consensus       755 ~~~~i~~l~~~------------------~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~  796 (835)
                         .+.++.+.                  -.....++++|....|+++.. .+.|+.++++
T Consensus       375 ---~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          375 ---RVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             ---EEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ---CEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence               22232221                  123678889844334555554 4578887764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.27  E-value=0.0002  Score=77.60  Aligned_cols=183  Identities=14%  Similarity=0.200  Sum_probs=125.4

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC----CC---EEEEEEC---CCeEEEEecCCCCceeEE
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS----LS---RLATSSA---DRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd----g~---~Latgs~---Dg~I~IWDl~t~~~~~~~  635 (835)
                      ...+++.....+-+.|||+ +++.+..+..  +.++.|...|+    ++   ++++...   +++|++|+++.....+..
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            3446666677789999999 8888888854  56777777663    22   2333333   579999988532222444


Q ss_pred             eec------CC-CCeEEEEE--cCC-CCcEEEEEeCCCcEEEEECC-------CCeeeeEee--cCceEEEEecCCCEEE
Q 003271          636 FTG------HS-TTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN-------NGSCAGVFK--SGATQMRFQPRLGRIL  696 (835)
Q Consensus       636 ~~~------h~-~~V~sl~f--sp~-g~~ll~sgs~Dg~I~iwDl~-------s~~~~~~~~--~~i~~l~fsp~~~~ll  696 (835)
                      +..      .. ..+..+|+  ++. +..+++....+|.+..|++.       +.+.++.+.  +.+..+.+.+..+.|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence            421      12 56777887  664 44567778888999999983       335566665  3477888899999999


Q ss_pred             EEEcCCcEEEEECC-----CCeEEEEEc-C-CCCCeEEEEE--cCCCC-EEEEEe--CCeEEEEEcC
Q 003271          697 AAAIENYISILDVE-----TQVCRLKLQ-G-HKNQVHSVCW--NTSGE-YLASVS--DELVRVWSIG  751 (835)
Q Consensus       697 ~~s~dg~I~IwDl~-----t~~~i~~l~-~-h~~~I~sl~f--spdg~-~Lasgs--Dg~I~IwDl~  751 (835)
                      ++-.+..|..||.+     +.+.+..+. + ....+..|++  .++++ ||++++  ++.+.|||..
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~  262 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ  262 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence            99999888888866     345565542 2 2246888887  45555 676666  7899999996

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.25  E-value=7.7e-05  Score=90.33  Aligned_cols=190  Identities=13%  Similarity=0.107  Sum_probs=120.0

Q ss_pred             CeEEEEEc-CCCCcEEEEEeCCC----cEEEEECCCC-eeee-EeecCceEEEEecCCCEEEEEEcC-----CcEEEEEC
Q 003271          642 TVMSLDFH-PSKEDLLCSCDNNS----EIRYWSINNG-SCAG-VFKSGATQMRFQPRLGRILAAAIE-----NYISILDV  709 (835)
Q Consensus       642 ~V~sl~fs-p~g~~ll~sgs~Dg----~I~iwDl~s~-~~~~-~~~~~i~~l~fsp~~~~ll~~s~d-----g~I~IwDl  709 (835)
                      .+....|+ |||+.++++.+.+|    .|+++|+.++ +.+. .+......++|+|+++.|+....+     ..|+++++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECSCCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCceeeEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            46788999 99998887776554    4999999988 6332 233335678899999998888775     25888898


Q ss_pred             CCCe--EEEEEc-CCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcce-EEEe-ecCCCceEEEEEeCCCCE
Q 003271          710 ETQV--CRLKLQ-GHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGEC-IHEL-SCTGNKFHSCVFHPTFPS  780 (835)
Q Consensus       710 ~t~~--~i~~l~-~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~-i~~l-~~~~~~V~sv~fspdg~~  780 (835)
                      .++.  ....+. ........+.|+|||++|+...    ...|+++|+.++.. .. +..+ ........++.|+. +..
T Consensus       255 gt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~-~~~~~~l~~~~~~~~~s~~~~~-g~~  332 (751)
T 2xe4_A          255 GKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNA-HNTLEIVRPREKGVRYDVQMHG-TSH  332 (751)
T ss_dssp             TSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTT-CCCEEESSCCCTTCCEEEEEET-TTE
T ss_pred             CCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCC-CceeEEeecCCCCceEEEeeee-CCE
Confidence            8753  222332 2334567889999999988765    23788899887521 11 1222 22344556666554 444


Q ss_pred             EEEEEc-C--C--eEEEEEcCC-CcEEE-eccCCC--CeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          781 LLVIGC-Y--E--TLELWNMTE-NKTLT-LSAHDK--LVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       781 L~sgs~-d--g--~I~IwDl~~-~~~~~-l~~h~~--~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      |+..+. +  +  .|.++|+.+ +.... +..|..  .+..+.+. .+.++++...||..+||
T Consensus       333 l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~  394 (751)
T 2xe4_A          333 LVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW  394 (751)
T ss_dssp             EEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred             EEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence            554443 3  2  788888875 33223 334433  44555554 33466677778876654

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.21  E-value=4.6e-05  Score=90.76  Aligned_cols=226  Identities=6%  Similarity=-0.048  Sum_probs=129.5

Q ss_pred             EEEECC-CCCEEEEEECCC-----------eEEEEecCCCCcee-EEe-ecCCCCeEEEEEcCCCCcEEEEEe-CCCcEE
Q 003271          602 DVRFSP-SLSRLATSSADR-----------TVRVWDTENPDYSL-RTF-TGHSTTVMSLDFHPSKEDLLCSCD-NNSEIR  666 (835)
Q Consensus       602 sv~fsp-dg~~Latgs~Dg-----------~I~IWDl~t~~~~~-~~~-~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I~  666 (835)
                      ++++.+ ++++++.|+.+.           .+.+||..++.... ... ..+.....++++..++. +++.|+ .+..+.
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~-lyv~GG~~~~~v~  268 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQ-IVVTGGNDAKKTS  268 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSC-EEEECSSSTTCEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCC-EEEeCCCCCCceE
Confidence            566777 888888887643           68899998876422 122 12333344577777766 555665 556899


Q ss_pred             EEECCCCeeeeEee--cC--ceEEEEecCCCEEEEEE-cC-----CcEEEEECCCCeEEEEE----cCCCCCeEEEEEcC
Q 003271          667 YWSINNGSCAGVFK--SG--ATQMRFQPRLGRILAAA-IE-----NYISILDVETQVCRLKL----QGHKNQVHSVCWNT  732 (835)
Q Consensus       667 iwDl~s~~~~~~~~--~~--i~~l~fsp~~~~ll~~s-~d-----g~I~IwDl~t~~~i~~l----~~h~~~I~sl~fsp  732 (835)
                      +||..+.+....-.  ..  ...+++.+++..+++|+ .+     ..+.+||..+.+-...-    ......-....+..
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~  348 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRS  348 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTT
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeec
Confidence            99998876543322  11  23455667888888887 34     56999999887644320    00000000011223


Q ss_pred             CCCEEEEEe----------CCeEEEEEcCCCCCcceEEEeec------CCCceEEEEEeC-CCCEEEEEEcCC-------
Q 003271          733 SGEYLASVS----------DELVRVWSIGSGSKGECIHELSC------TGNKFHSCVFHP-TFPSLLVIGCYE-------  788 (835)
Q Consensus       733 dg~~Lasgs----------Dg~I~IwDl~t~~~~~~i~~l~~------~~~~V~sv~fsp-dg~~L~sgs~dg-------  788 (835)
                      ++..++.++          ...+.+||..+............      ....-.++.|.. +++.+++|+.++       
T Consensus       349 ~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~  428 (656)
T 1k3i_A          349 DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDAT  428 (656)
T ss_dssp             TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCC
T ss_pred             CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcC
Confidence            344333332          34678899887632111111111      011234445544 566666766432       


Q ss_pred             ----eEEEEEcCCCcEEEec---cCCCC-eeEEEEeCCCCEEEEEECC
Q 003271          789 ----TLELWNMTENKTLTLS---AHDKL-VSSLAASTVNGMVASASHD  828 (835)
Q Consensus       789 ----~I~IwDl~~~~~~~l~---~h~~~-V~~la~spdg~~LaSgs~D  828 (835)
                          .|.+||..+.....+.   -+... -.++++.+++++++.|+.+
T Consensus       429 ~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~  476 (656)
T 1k3i_A          429 TNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQR  476 (656)
T ss_dssp             CCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBS
T ss_pred             CcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcc
Confidence                6888998888776543   22222 2345667899999999865

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.11  E-value=0.00087  Score=76.41  Aligned_cols=229  Identities=12%  Similarity=0.110  Sum_probs=138.4

Q ss_pred             CeEEEEECC-CCCEEEEEEC-CCeEEEEecCCCCceeEEeecC----CCCeEEEEE-------cCCCCcEEEEEeCCC--
Q 003271          599 WITDVRFSP-SLSRLATSSA-DRTVRVWDTENPDYSLRTFTGH----STTVMSLDF-------HPSKEDLLCSCDNNS--  663 (835)
Q Consensus       599 ~V~sv~fsp-dg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h----~~~V~sl~f-------sp~g~~ll~sgs~Dg--  663 (835)
                      ....|+|+| +...|+.+.. .+.|++.|+.++.  +..+...    ......|+|       +++++.++++...++  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~--v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~  217 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRM--LSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKG  217 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTE--EEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCE--EEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCc
Confidence            356899998 3445555544 4678888888755  3333221    235889999       999887776665542  


Q ss_pred             ----cEEEEECCC-Cee--------eeEeecCceEEEEecCCCEEEEEEc-CCcEEEEECC-------CCeE--------
Q 003271          664 ----EIRYWSINN-GSC--------AGVFKSGATQMRFQPRLGRILAAAI-ENYISILDVE-------TQVC--------  714 (835)
Q Consensus       664 ----~I~iwDl~s-~~~--------~~~~~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~-------t~~~--------  714 (835)
                          .|.+++... +..        +..+ .+...++++|+++.|+++.. ++.|+.+|+.       ++..        
T Consensus       218 ~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~  296 (496)
T 3kya_A          218 DESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN  296 (496)
T ss_dssp             GGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred             ccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence                367776443 222        2222 34567889997777776665 5779999987       4442        


Q ss_pred             ------EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcce--EEEeecC---------------CCce
Q 003271          715 ------RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELSCT---------------GNKF  769 (835)
Q Consensus       715 ------i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~--i~~l~~~---------------~~~V  769 (835)
                            +... +.......|+|+|+|++|+.+.  ...|+.++...... ..  ...+.+.               -...
T Consensus       297 ~g~~~~l~~~-~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~-~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P  374 (496)
T 3kya_A          297 PNTFKQLFTI-ADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKK-EFITPYNFVGGYKQSGYRDDVGTEARMNNP  374 (496)
T ss_dssp             TTTEEEEEEC-SSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTT-EECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred             ccccceeEec-CCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcc-eecccEEecCCCCCCcccCCcccccccCCC
Confidence                  2222 2344568999999999766665  67899877643211 10  0112111               0123


Q ss_pred             E-EEEEe-------CCCCEEEEEE-cCCeEEEEEcCCCcEEEeccC------------------------CCCeeEEEEe
Q 003271          770 H-SCVFH-------PTFPSLLVIG-CYETLELWNMTENKTLTLSAH------------------------DKLVSSLAAS  816 (835)
Q Consensus       770 ~-sv~fs-------pdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h------------------------~~~V~~la~s  816 (835)
                      . .++..       .++. |+++. ....|+.++ .++.+.++.+.                        -.....|+++
T Consensus       375 ~~gv~vd~~~~~~~~~g~-lyVaD~~N~rIr~i~-~~G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd  452 (496)
T 3kya_A          375 CQGVFVKNPDYTGEEEYD-FYFVDRLNFCVRKVT-PEGIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD  452 (496)
T ss_dssp             EEEEEEECTTCCSSCCEE-EEEEEGGGTEEEEEC-TTCBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred             eEEEEEccccccccCCCe-EEEEECCCCEEEEEe-CCCCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence            4 44554       3454 55544 456999999 56666554332                        1236789999


Q ss_pred             CC-CCEEEEEECCCcEEEe
Q 003271          817 TV-NGMVASASHDKCVKIW  834 (835)
Q Consensus       817 pd-g~~LaSgs~DG~V~IW  834 (835)
                      ++ +.++++=....+|+.+
T Consensus       453 ~~~g~lyVaD~~N~rIrki  471 (496)
T 3kya_A          453 DVKEMFYVHDQVGHTIRTI  471 (496)
T ss_dssp             TTTTEEEEEETTTTEEEEE
T ss_pred             CCCCEEEEEeCCCCEEEEE
Confidence            97 6665655566677765

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=98.11  E-value=0.0021  Score=77.77  Aligned_cols=215  Identities=9%  Similarity=0.029  Sum_probs=139.5

Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC----eeeeEee---cCc
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG----SCAGVFK---SGA  683 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~----~~~~~~~---~~i  683 (835)
                      +|+.+ ....|+..++.....  ..+......+..|+|++.+..++++-...+.|+.+++...    .....+.   ...
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~--~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P  473 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP  473 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             ccccc-cccceeEeeccCCcc--eeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCc
Confidence            34333 445688888876553  3333345678899999977778877777889999998753    2222333   336


Q ss_pred             eEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCcceE
Q 003271          684 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECI  759 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~~~~~~i  759 (835)
                      ..|++.+.++.|+++.. .+.|.++++........+.........|+++|.+.+|+.+.  . +.|.+.++...   ...
T Consensus       474 ~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~---~~~  550 (791)
T 3m0c_C          474 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY  550 (791)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred             ceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC---ceE
Confidence            78999998888887775 57899999986655444444455688999999866666655  3 67888888654   222


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          760 HELSCTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       760 ~~l~~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~---h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      ..+...-.....|++++.+..|+++... +.|..+++.......+..   .-....+|++..+ .++++-...+.|.
T Consensus       551 ~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~~-~lYwtD~~~~~I~  626 (791)
T 3m0c_C          551 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIF  626 (791)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEETT-EEEEEETTTTEEE
T ss_pred             EEEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeCC-EEEEEECCCCEEE
Confidence            2233334678999999888888888654 489999997765543322   2234556666432 3333333344444

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.10  E-value=0.0012  Score=75.34  Aligned_cols=239  Identities=14%  Similarity=0.131  Sum_probs=144.9

Q ss_pred             CEEEEEEeC-CCC-EEEEEeCCCeEEEEEcCCCeEEEEeccC---CCCeEEEEE-------CCCCCEEEEEECCC-----
Q 003271          557 KVESCHFSP-DGK-LLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRF-------SPSLSRLATSSADR-----  619 (835)
Q Consensus       557 ~V~sl~fSp-dg~-~Lasgs~Dg~I~VWd~~t~~~i~~l~~h---~~~V~sv~f-------spdg~~Latgs~Dg-----  619 (835)
                      ....|+|+| +.. ++++-...+.|++.|.+++.+...+...   ......|+|       ++++.+|+++...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            357899998 344 4444444467999999887776655432   235889999       99999777776654     


Q ss_pred             --eEEEEecCC-CCce----eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECC-------CCee----------
Q 003271          620 --TVRVWDTEN-PDYS----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN-------NGSC----------  675 (835)
Q Consensus       620 --~I~IWDl~t-~~~~----~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~-------s~~~----------  675 (835)
                        .|.+++... +...    ...+... .....++++|++..++++...++.|+.+|+.       ++..          
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g  298 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPN  298 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTT
T ss_pred             CceEEEEecCCCCceeecccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeeccccccccc
Confidence              266665443 1221    0222211 2346788999777788888888999999997       5543          


Q ss_pred             -eeE-ee----cCceEEEEecCCCEEEEEEc-CCcEEEEEC--CCCeEE--EEEcCC---C------------CCeE-EE
Q 003271          676 -AGV-FK----SGATQMRFQPRLGRILAAAI-ENYISILDV--ETQVCR--LKLQGH---K------------NQVH-SV  728 (835)
Q Consensus       676 -~~~-~~----~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl--~t~~~i--~~l~~h---~------------~~I~-sl  728 (835)
                       ... +.    .....++|+|+++.++++.. ...|+.+|.  .++...  ..+.+.   .            .... .+
T Consensus       299 ~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv  378 (496)
T 3kya_A          299 TFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGV  378 (496)
T ss_dssp             TEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEE
T ss_pred             ccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEE
Confidence             111 21    22568999999997776665 467888654  333220  122111   1            1234 45


Q ss_pred             EEc-------CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC------------------------CCceEEEEEeC
Q 003271          729 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT------------------------GNKFHSCVFHP  776 (835)
Q Consensus       729 ~fs-------pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~------------------------~~~V~sv~fsp  776 (835)
                      +..       .++.++++-. ...|+.++. ++    .+.++.+.                        -.....|++++
T Consensus       379 ~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~-~G----~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~  453 (496)
T 3kya_A          379 FVKNPDYTGEEEYDFYFVDRLNFCVRKVTP-EG----IVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDD  453 (496)
T ss_dssp             EEECTTCCSSCCEEEEEEEGGGTEEEEECT-TC----BEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEET
T ss_pred             EEccccccccCCCeEEEEECCCCEEEEEeC-CC----CEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEEC
Confidence            554       4556555555 779999983 33    23333221                        12367889988


Q ss_pred             CCCEEEEEEc-CCeEEEEEcCCCcEE
Q 003271          777 TFPSLLVIGC-YETLELWNMTENKTL  801 (835)
Q Consensus       777 dg~~L~sgs~-dg~I~IwDl~~~~~~  801 (835)
                      +...|+++.. ...|+.++++...+.
T Consensus       454 ~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          454 VKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             TTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCEEEEEeCCCCEEEEEECCCCccc
Confidence            7334555554 458888888776554

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.06  E-value=0.0029  Score=74.77  Aligned_cols=218  Identities=10%  Similarity=0.000  Sum_probs=145.1

Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEE
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMR  687 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~  687 (835)
                      +|+.+ ....|+..++++...........-..+..|+|++.+..++++-..++.|+.+++........+..   ....++
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlA   86 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMA   86 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEE
Confidence            44444 45679999998755322222223356889999998888888877889999999976544333432   367899


Q ss_pred             EecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceEEEee
Q 003271          688 FQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECIHELS  763 (835)
Q Consensus       688 fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i~~l~  763 (835)
                      +++.++.|+.+.. .+.|.+.++........+...-.....|+++|...+|+.+.   .+.|...++..... .   .+.
T Consensus        87 vD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~-~---~l~  162 (628)
T 4a0p_A           87 VDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSER-T---TLV  162 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSC-E---EEE
T ss_pred             EEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCce-E---EEE
Confidence            9988888877765 47899999876543333333445678999998655665555   45788888765421 2   222


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          764 CTGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       764 ~~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      ........+++++++..|+.+... +.|..+|+.......+........+|++.. +.++++-...+.|...
T Consensus       163 ~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~  233 (628)
T 4a0p_A          163 PNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERA  233 (628)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEE
T ss_pred             CCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEE
Confidence            345678999999988888888764 589999997755443333444566888765 4444444345556543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.96  E-value=0.0018  Score=70.72  Aligned_cols=225  Identities=8%  Similarity=0.062  Sum_probs=123.1

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE--EEEec---cCCCCeEEEEECCC---CCEEEEEEC-C-----Ce
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLE---EHTQWITDVRFSPS---LSRLATSSA-D-----RT  620 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--i~~l~---~h~~~V~sv~fspd---g~~Latgs~-D-----g~  620 (835)
                      -..-..++|.|||+++++ ..++.|++++  +++.  +..+.   ........|+|+|+   +..|+++.. +     ..
T Consensus        30 l~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~  106 (352)
T 2ism_A           30 LEVPWALAFLPDGGMLIA-ERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQ  106 (352)
T ss_dssp             CSCEEEEEECTTSCEEEE-ETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEE
T ss_pred             CCCceEEEEcCCCeEEEE-eCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccE
Confidence            345779999999985554 5679999998  3432  22222   12356889999998   555555443 2     67


Q ss_pred             EEEEecCCCCc-----eeEEee---cCCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCC------
Q 003271          621 VRVWDTENPDY-----SLRTFT---GHSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG------  673 (835)
Q Consensus       621 I~IWDl~t~~~-----~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~-------------Dg~I~iwDl~s~------  673 (835)
                      |..|+......     .+..+.   ........|+|.|+|. ++++.+.             .|.|..++....      
T Consensus       107 v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~np  185 (352)
T 2ism_A          107 VVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM-LYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNP  185 (352)
T ss_dssp             EEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC-EEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCT
T ss_pred             EEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC-EEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCc
Confidence            88888774321     111122   1112346899999985 5544332             256766766531      


Q ss_pred             ------eeeeEeec---CceEEEEecCCCEEEEEEcC-Cc--------EEEEECCC----------------CeEEEEEc
Q 003271          674 ------SCAGVFKS---GATQMRFQPRLGRILAAAIE-NY--------ISILDVET----------------QVCRLKLQ  719 (835)
Q Consensus       674 ------~~~~~~~~---~i~~l~fsp~~~~ll~~s~d-g~--------I~IwDl~t----------------~~~i~~l~  719 (835)
                            .....+..   ....++|+|+.+.|+++... +.        |.+.....                ..++..+.
T Consensus       186 f~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~  265 (352)
T 2ism_A          186 FLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWP  265 (352)
T ss_dssp             TTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECT
T ss_pred             ccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecC
Confidence                  11112221   14568899955556655543 22        33322111                01222222


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCc---ceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          720 GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG---ECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       720 ~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~---~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                       +......++| .+|.++++.. .+.|...++......   .....+......+..+++.|+|..+++..
T Consensus       266 -~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          266 -QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             -TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             -CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence             2234567777 4566555544 668888887654210   01122223346788999999997555443

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.95  E-value=0.01  Score=69.93  Aligned_cols=274  Identities=8%  Similarity=-0.019  Sum_probs=160.1

Q ss_pred             CCEEEEEEeCCCCEE-EEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC--CCeEEEEecCCCCce
Q 003271          556 SKVESCHFSPDGKLL-ATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYS  632 (835)
Q Consensus       556 ~~V~sl~fSpdg~~L-asgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~--Dg~I~IWDl~t~~~~  632 (835)
                      .....+++++.+..| ++-...+.|.+.+++.......+...-.....|++.|.+.+|+.+..  .+.|...+++.... 
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~-  162 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSR-  162 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSC-
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCce-
Confidence            568899999965554 45556789999998765433333344455778999997666666654  35677677764332 


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc-CCcEEEEE
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI-ENYISILD  708 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~-dg~I~IwD  708 (835)
                      .......-.....|++++++..++++-...+.|..+|+..........   .....+++..+  .++.+.. .+.|...|
T Consensus       163 ~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d  240 (619)
T 3s94_A          163 FIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDWSTHSILACN  240 (619)
T ss_dssp             EEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECTTTCSEEEEE
T ss_pred             EEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecCCCCEEEEEE
Confidence            222223345678999999878788777778899999997544332222   12345666543  6666554 57788888


Q ss_pred             CCCCeEEEEEcC-----------CC---------------------------CCeEEEEE-----cCC--------CCEE
Q 003271          709 VETQVCRLKLQG-----------HK---------------------------NQVHSVCW-----NTS--------GEYL  737 (835)
Q Consensus       709 l~t~~~i~~l~~-----------h~---------------------------~~I~sl~f-----spd--------g~~L  737 (835)
                      ..+++....+..           |.                           ....|.|-     .+|        ..+|
T Consensus       241 ~~tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~L  320 (619)
T 3s94_A          241 KYTGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELL  320 (619)
T ss_dssp             SSSCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEE
T ss_pred             CCCCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEE
Confidence            876543222110           00                           01112110     011        1244


Q ss_pred             EEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcEEEe-ccCCCCeeEEEE
Q 003271          738 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL-SAHDKLVSSLAA  815 (835)
Q Consensus       738 asgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~l-~~h~~~V~~la~  815 (835)
                      +.+..+.|+..++...........+ ..-..+..++|++.+..|+.+.. .+.|+.+++.......+ ...-..+..|++
T Consensus       321 l~~~~~~i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAv  399 (619)
T 3s94_A          321 LLARRTDLRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAV  399 (619)
T ss_dssp             EEEESSCEEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEE
T ss_pred             EEEcccceEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEE
Confidence            4455566777777654321111111 12345788999997777777765 56899999887544433 233356788999


Q ss_pred             eCCCC-EEEEEECCCcEEE
Q 003271          816 STVNG-MVASASHDKCVKI  833 (835)
Q Consensus       816 spdg~-~LaSgs~DG~V~I  833 (835)
                      ...++ ++++-+..+.|.+
T Consensus       400 D~~~~~lY~tD~~~~~I~v  418 (619)
T 3s94_A          400 DWVARNLYWTDTGTDRIEV  418 (619)
T ss_dssp             ETTTTEEEEEETTTTEEEE
T ss_pred             ecccCcEEEEeCCCCcEEE
Confidence            87555 4444334455554

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.94  E-value=0.0022  Score=75.59  Aligned_cols=220  Identities=7%  Similarity=-0.011  Sum_probs=136.6

Q ss_pred             CCeEEEEEcCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCC
Q 003271          576 DKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE  653 (835)
Q Consensus       576 Dg~I~VWd~~t~~-~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~  653 (835)
                      ...|++.++.... ....+...-..+..|+|++.+..|+.+.. .+.|..++++........+...-.....|++++.+.
T Consensus        17 ~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~   96 (619)
T 3s94_A           17 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGE   96 (619)
T ss_dssp             SSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTT
T ss_pred             cccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCC
Confidence            5678888887643 22222233456789999987666665554 678999988764321223333335788999999878


Q ss_pred             cEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEcCCCCCeEEE
Q 003271          654 DLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVHSV  728 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~~h~~~I~sl  728 (835)
                      .++++-...+.|.+.++........+.   .....++++|.++.++.+...  +.|...++............-.....|
T Consensus        97 ~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A           97 KLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             EEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             EEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence            788888888999999998654333332   236789999998888887753  577777776543333333345567899


Q ss_pred             EEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcE
Q 003271          729 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT  800 (835)
Q Consensus       729 ~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~  800 (835)
                      ++++++..|+.+.  .+.|..+|+........+   .........+++..+  .|+.+.. .+.|...|..+++.
T Consensus       177 ald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~---~~~~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~  246 (619)
T 3s94_A          177 TLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVV---KGSLPHPFALTLFED--ILYWTDWSTHSILACNKYTGEG  246 (619)
T ss_dssp             EEETTTTEEEEEETTTCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCC
T ss_pred             EEEccCCEEEEEeCCCCeEEEecCCCCccEEEE---eCCCCCceEEEEeCC--EEEEecCCCCEEEEEECCCCcc
Confidence            9999877777776  668988888654221111   111222345666554  5666654 45899999877653

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.94  E-value=0.0089  Score=70.57  Aligned_cols=222  Identities=7%  Similarity=-0.022  Sum_probs=149.5

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl  646 (835)
                      +|+.+ ....|+..++++......+. ..-..+..|+|++....|+.+ ..++.|..++++.... ...+.........|
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~-~~v~~~g~~~P~Gl   85 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSAL-EHVVEFGLDYPEGM   85 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEECSSCSCCCEE
T ss_pred             EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCc-EEEEeCCCCCcceE
Confidence            45544 45789999998765443332 223467899999876555544 4578999999876442 22333222457789


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc--CCcEEEEECCCCeEEEEEcCC
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGH  721 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~~i~~l~~h  721 (835)
                      ++.+.+..++++-...+.|.+.++........+.   .....++++|..+.|+.+..  .+.|...++........+. .
T Consensus        86 AvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~-~  164 (628)
T 4a0p_A           86 AVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVP-N  164 (628)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC-S
T ss_pred             EEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEEC-C
Confidence            9988878788887778899999997543322221   23678999998888888774  4678888887554333333 4


Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCC
Q 003271          722 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTEN  798 (835)
Q Consensus       722 ~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~  798 (835)
                      -.....|++++++..|+.+.  .+.|..+|+..... +.   +.........+++..  ..|+.+.. .+.|...|..++
T Consensus       165 ~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v---~~~~l~~P~glav~~--~~ly~tD~~~~~I~~~dk~tg  238 (628)
T 4a0p_A          165 VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EV---IADDLPHPFGLTQYQ--DYIYWTDWSRRSIERANKTSG  238 (628)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EE---EEECCSCEEEEEEET--TEEEEEETTTTEEEEEETTTC
T ss_pred             CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EE---eeccCCCceEEEEEC--CEEEEecCCCCEEEEEECCCC
Confidence            56788999999888777776  67999999976532 22   233344566777765  35666665 568999997666


Q ss_pred             c
Q 003271          799 K  799 (835)
Q Consensus       799 ~  799 (835)
                      +
T Consensus       239 ~  239 (628)
T 4a0p_A          239 Q  239 (628)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.93  E-value=0.0067  Score=66.33  Aligned_cols=227  Identities=11%  Similarity=0.037  Sum_probs=126.1

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-EEEEec---cCCCCeEEEEECCC---CCEEEEEEC----C----C
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLE---EHTQWITDVRFSPS---LSRLATSSA----D----R  619 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-~i~~l~---~h~~~V~sv~fspd---g~~Latgs~----D----g  619 (835)
                      -....+++|.|||++++ +..+|.|++++. +++ .+..+.   ........|+|+|+   +..|+++..    +    .
T Consensus        28 l~~P~~ia~~pdG~l~V-~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~  105 (354)
T 3a9g_A           28 LEVPWSIAPLGGGRYLV-TERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRN  105 (354)
T ss_dssp             CSCEEEEEEEETTEEEE-EETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEE
T ss_pred             CCCCeEEEEcCCCeEEE-EeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcce
Confidence            34578999999997554 566799999973 454 222221   12346889999997   455554433    3    5


Q ss_pred             eEEEEecCCCC------c-eeEEeec-CCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCC-----
Q 003271          620 TVRVWDTENPD------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNG-----  673 (835)
Q Consensus       620 ~I~IWDl~t~~------~-~~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~-------------Dg~I~iwDl~s~-----  673 (835)
                      .|..|+.....      . .+..+.. .......|.|.|+|. ++++.+.             .|.|..++....     
T Consensus       106 ~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~-Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~n  184 (354)
T 3a9g_A          106 RVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM-LYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADN  184 (354)
T ss_dssp             EEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC-EEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTS
T ss_pred             EEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc-EEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCC
Confidence            67788876541      1 1111221 112346799999986 4444322             246666665432     


Q ss_pred             ----eeeeEee-cCceEEEEecCCCEEEEEEcCC----cEEEEECCC----------------CeEEEEEcCCCCCeEEE
Q 003271          674 ----SCAGVFK-SGATQMRFQPRLGRILAAAIEN----YISILDVET----------------QVCRLKLQGHKNQVHSV  728 (835)
Q Consensus       674 ----~~~~~~~-~~i~~l~fsp~~~~ll~~s~dg----~I~IwDl~t----------------~~~i~~l~~h~~~I~sl  728 (835)
                          ..+.... .....++|+|+.+.|+++....    .|.+.....                ..++..+.........+
T Consensus       185 pf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~  264 (354)
T 3a9g_A          185 PFPNSPIWSYGHRNPQGIDWHRASGVMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGA  264 (354)
T ss_dssp             SSTTCCEEEECCSCCCEEEECTTTCCEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEE
T ss_pred             CCCCCcEEEEccCCcceEEEeCCCCCEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcce
Confidence                0111111 1256799999555566655432    244432211                01222331123457788


Q ss_pred             EEc-------CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-cCCCceEEEEEeCCCCEEEEE
Q 003271          729 CWN-------TSGEYLASVS-DELVRVWSIGSGSKGECIHELS-CTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       729 ~fs-------pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-~~~~~V~sv~fspdg~~L~sg  784 (835)
                      +|.       .+|.++++.. .+.|..+++...........+. .....+..+++.|+|..+++.
T Consensus       265 ~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~  329 (354)
T 3a9g_A          265 SFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILIST  329 (354)
T ss_dssp             EECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEE
T ss_pred             EEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEE
Confidence            883       4676666555 6789888887532111122222 234678999999999644443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.89  E-value=2.3e-05  Score=94.04  Aligned_cols=224  Identities=8%  Similarity=-0.016  Sum_probs=136.5

Q ss_pred             CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCC---CceeEEeecCCCCeEEEEEcCC
Q 003271          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENP---DYSLRTFTGHSTTVMSLDFHPS  651 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~---~~~~~~~~~h~~~V~sl~fsp~  651 (835)
                      .+.|++.++.+.+....+.. ...+..|+|.+.+..|+.+. ..+.|+.+++...   ......+.........|++.+.
T Consensus       385 ~~~I~~id~~~~~~~~~~~~-~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~  463 (699)
T 1n7d_A          385 RHEVRKMTLDRSEYTSLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWI  463 (699)
T ss_dssp             TTC-CEECTTSCCEECCSCC-CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCS
T ss_pred             ccceEEEeCCCCcceeeecc-CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEee
Confidence            46788888887666544433 34567899998766666554 4578999998751   1111222112234567888876


Q ss_pred             CCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEcCCCCCeE
Q 003271          652 KEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQGHKNQVH  726 (835)
Q Consensus       652 g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~~h~~~I~  726 (835)
                      +..|+++-...+.|.++++........+.   .....++++|.+++|+++...  +.|.++++........+...-....
T Consensus       464 ~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~Pn  543 (699)
T 1n7d_A          464 HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPN  543 (699)
T ss_dssp             SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCC
T ss_pred             CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCcc
Confidence            66677776677899999988654443333   235678999987777776543  6788887764322222222234567


Q ss_pred             EEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEe
Q 003271          727 SVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTL  803 (835)
Q Consensus       727 sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l  803 (835)
                      .|+|++++..|+.+.  .+.|.++++..... ..+............+++..+  .|+++. ..+.|..+|..+++.+..
T Consensus       544 Glavd~~~~~LY~aD~~~~~I~~~d~dG~~~-~~~~~~~~~~~~P~glavd~~--~lywtd~~~~~V~~~d~~~G~~~~~  620 (699)
T 1n7d_A          544 GITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVFED--KVFWTDIINEAIFSANRLTGSDVNL  620 (699)
T ss_dssp             CEEECTTTCCEEEEETTTTEEEEECSSSSCC-EEECCCSSSCSSCCCCEEETT--EEEEECSTTTCEEEEETTTEEEEEC
T ss_pred             EEEEeccCCEEEEEecCCCeEEEEccCCCce-EEEEecCCcCCCceEeEEECC--EEEEEeCCCCeEEEEEccCCCceEE
Confidence            899998866666555  67899999865321 222111111233445566543  455554 456999999888876643

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.85  E-value=0.057  Score=68.04  Aligned_cols=270  Identities=9%  Similarity=0.011  Sum_probs=149.3

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCC--CCEEEEEECCCeEEEEecCCCCc-e
Q 003271          556 SKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPS--LSRLATSSADRTVRVWDTENPDY-S  632 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspd--g~~Latgs~Dg~I~IWDl~t~~~-~  632 (835)
                      .+|.-..|...|..-+.+..+.-..+|... ++....--..........|+..  ..-++.. .++.++|..+++... .
T Consensus       652 ~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~~~v~~~~~F~se~~~~g~v~~-~~~~LrI~~i~~~~~~~  729 (1158)
T 3ei3_A          652 QPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNLKEVNYMCPLNSDGYPDSLALA-NNSTLTIGTIDEIQKLH  729 (1158)
T ss_dssp             SCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSSSCCCEEEEECCSSSTTEEEEE-CSSCEEEEEECCSSSEE
T ss_pred             CceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccChHHhceEeccCcccCCCcEEEE-cCCceEEEEecccCCee
Confidence            345444454444433333334555555433 3333221111122234456442  2334433 355699988765332 2


Q ss_pred             eEEeecCCCCeEEEEEcCCCCcEEEEEeC------------------------------------------------CCc
Q 003271          633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDN------------------------------------------------NSE  664 (835)
Q Consensus       633 ~~~~~~h~~~V~sl~fsp~g~~ll~sgs~------------------------------------------------Dg~  664 (835)
                      .+.+. -...+..++++|..+.+++.++.                                                -+.
T Consensus       730 ~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~  808 (1158)
T 3ei3_A          730 IRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHN  808 (1158)
T ss_dssp             EEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEE
T ss_pred             EEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEE
Confidence            22222 34567888888876654443321                                                124


Q ss_pred             EEEEECCCCeeeeEeecC----ceEEE---EecC-CCEEEEEE----------cCCcEEEEECCCCeEEEEE-cCCCCCe
Q 003271          665 IRYWSINNGSCAGVFKSG----ATQMR---FQPR-LGRILAAA----------IENYISILDVETQVCRLKL-QGHKNQV  725 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~~----i~~l~---fsp~-~~~ll~~s----------~dg~I~IwDl~t~~~i~~l-~~h~~~I  725 (835)
                      |+++|..+.+.+..+.-.    +.+++   |..+ ..++++|+          ..|.|++|++...+..... ....+.|
T Consensus       809 i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v  888 (1158)
T 3ei3_A          809 LLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAV  888 (1158)
T ss_dssp             EEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCE
T ss_pred             EEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcC
Confidence            677777777766555422    33333   3222 36788777          2378999998754332221 1246788


Q ss_pred             EEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE--EcCCCcEEEe
Q 003271          726 HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW--NMTENKTLTL  803 (835)
Q Consensus       726 ~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw--Dl~~~~~~~l  803 (835)
                      ++++-. +| +|+++-...|++|++...+...  ....... .|..+.....+.+|++|..-..|.++  +...++...+
T Consensus       889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~--~~~~~~~-~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~  963 (1158)
T 3ei3_A          889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELR--TECNHYN-NIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEI  963 (1158)
T ss_dssp             EEEEEE-TT-EEEEEETTEEEEEEECTTSCEE--EEEEECC-CSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEE
T ss_pred             EEEeee-CC-EEEEEcCCEEEEEECCCCceEE--EEeeccc-cEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEE
Confidence            888754 34 6666778899999997653211  1111111 13333333356789999988866664  5555655543


Q ss_pred             --ccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          804 --SAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       804 --~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                        ..+...++++.|-.+ ..++.+..+|.|.+.
T Consensus       964 a~D~~~~~vta~~~ld~-~t~l~aD~~gNl~vl  995 (1158)
T 3ei3_A          964 ARDFNPNWMSAVEILDD-DNFLGAENAFNLFVC  995 (1158)
T ss_dssp             EECCSCBCEEEEEEEET-TEEEEEETTSEEEEE
T ss_pred             EeecccccEEEEEEEcc-CcEEEEcCCCcEEEE
Confidence              345667888888755 467778999998875

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.84  E-value=0.037  Score=66.60  Aligned_cols=261  Identities=11%  Similarity=0.083  Sum_probs=153.5

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      ...|.++....+| .|..|+.+ -+.+||..+.+...........|.++.. .++ .|..++.+ -|..||..+...  .
T Consensus        62 ~~~i~~i~~d~~g-~lWigT~~-Gl~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g-~lWigt~~-Gl~~~~~~~~~~--~  134 (758)
T 3ott_A           62 NTRIYCGVIIDNT-YLYMGTDN-GILVYNYRADRYEQPETDFPTDVRTMAL-QGD-TLWLGALN-GLYTYQLQSRKL--T  134 (758)
T ss_dssp             SSCEEEEEEETTT-EEEEEETT-EEEEEETTTTEECCCSCCCCSCEEEEEE-ETT-EEEEEETT-EEEEEETTTCCE--E
T ss_pred             CceEEEEEEcCCC-cEEEEeCC-CeEEEeCCCCEEECcccCCCceEEEEEe-cCC-cEEEEcCC-cceeEeCCCCeE--E
Confidence            3569998888777 56666655 4889998876543311112335777754 344 56666666 588889876542  2


Q ss_pred             Eee-----cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-e-------cCceEEEEecCCCEEEEEEcC
Q 003271          635 TFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K-------SGATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       635 ~~~-----~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~-------~~i~~l~fsp~~~~ll~~s~d  701 (835)
                      .+.     .....|.++....++. +.+ ++. +-|..||..+++..... .       ..+.++....+++.|.+++. 
T Consensus       135 ~~~~~~~~l~~~~i~~i~~d~~g~-lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-  210 (758)
T 3ott_A          135 SFDTRRNGLPNNTIYSIIRTKDNQ-IYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-  210 (758)
T ss_dssp             EECHHHHCCSCSCEEEEEECTTCC-EEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-
T ss_pred             EeccCCCCcCCCeEEEEEEcCCCC-EEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-
Confidence            221     1234688888877765 433 443 45788888776543211 1       12566777777777777774 


Q ss_pred             CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEe-----ecCCCceEEEEEeC
Q 003271          702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHEL-----SCTGNKFHSCVFHP  776 (835)
Q Consensus       702 g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l-----~~~~~~V~sv~fsp  776 (835)
                      +.|..||..+++...........|.+++...+|.+.++. ++-|.+++..+... ..+...     .-....|.++....
T Consensus       211 ~Gl~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT-~~Gl~~~~~~~~~~-~~~~~~~~~~~~l~~~~i~~i~~D~  288 (758)
T 3ott_A          211 GYLFQYFPSTGQIKQTEAFHNNSIKSLALDGNGDLLAGT-DNGLYVYHNDTTPL-QHIIHDSRNIQSLTNNIIWNIFADQ  288 (758)
T ss_dssp             EEEEEEETTTTEEEEEEEEEEEEEEEEEECTTCCEEEEE-TTEEEEECCTTSCC-EEECCCTTCTTSCSCSCEEEEEECT
T ss_pred             CCCeEEcCCCCeEEeccCCCCCeEEEEEEcCCCCEEEEe-CCceeEEecCCCcE-EEEEcCCCCcCcCCcCeEEEEEEcC
Confidence            568899988765432211123458888888888877655 55688888766421 111100     01234588888887


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCC-cEEEec-----cCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          777 TFPSLLVIGCYETLELWNMTEN-KTLTLS-----AHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~-~~~~l~-----~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                      ++. |.+|+..| |.++..... +.....     .....|.++....+|.+.+. +.+|.+
T Consensus       289 ~g~-lWiGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl~  346 (758)
T 3ott_A          289 EHN-IWLGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGLI  346 (758)
T ss_dssp             TCC-EEEEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEEE
T ss_pred             CCC-EEEEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcce
Confidence            776 66677666 555433221 111111     12346888887777765554 455533

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.84  E-value=0.0027  Score=68.51  Aligned_cols=228  Identities=11%  Similarity=0.028  Sum_probs=128.5

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec---cCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY  631 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~---~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~  631 (835)
                      ...+.+|.|++ +..++ ++.++.|.. ..+.++.-..+.   .+...+..|.+.+++..++++ .++.|.. ..+.+..
T Consensus        79 ~~~~~~i~~~~-~~~~~-~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWI-VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEE-EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEE-EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCCEEEEe-CCccEEE-EcCCCCC
Confidence            44688999986 44444 455665544 333333322222   234567888887776665554 5664422 1222322


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE-EEC--CCCeeeeE-eecCceEEEEecCCCEEEEEEcCCcEEEE
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY-WSI--NNGSCAGV-FKSGATQMRFQPRLGRILAAAIENYISIL  707 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i-wDl--~s~~~~~~-~~~~i~~l~fsp~~~~ll~~s~dg~I~Iw  707 (835)
                      -......+...+..+.+.+++. +++.+. +|.|+. +|-  .+-+.+.. ....+..+.+.+++. +++++.+|.+++.
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~-~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~-~~~~~~~G~~~~s  230 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGE-YVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGR-LWMIVNGGKIAFS  230 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSC-EEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSC-EEEEETTTEEEEE
T ss_pred             CEEeecCCCcceEEEEEcCCCc-EEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCC-EEEEeCCceEEEe
Confidence            1223334556789999999865 554554 455444 332  22222211 123466778888765 5566677887776


Q ss_pred             ECCCCeEEEEEc-C---CCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeec---CCCceEEEEEeCCCCE
Q 003271          708 DVETQVCRLKLQ-G---HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSC---TGNKFHSCVFHPTFPS  780 (835)
Q Consensus       708 Dl~t~~~i~~l~-~---h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~---~~~~V~sv~fspdg~~  780 (835)
                      +...++.-..+. .   +...+.++.+.+++.+++++.++.| ++....+.   ....+..   ....+.++.|.+++ .
T Consensus       231 ~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i-~~S~DgG~---tW~~~~~~~~~~~~~~~v~~~~~~-~  305 (327)
T 2xbg_A          231 DPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL-LCSQDGGQ---TWQQDVDVKKVPSNFYKILFFSPD-Q  305 (327)
T ss_dssp             ETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-EEESSTTS---SCEECGGGTTSSSCCCEEEEEETT-E
T ss_pred             cCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeCCCeE-EEeCCCCc---ccEEcCccCCCCCCeEEEEEECCC-c
Confidence            433233222222 1   2235889999998888888888877 44455452   2233321   23567888887554 4


Q ss_pred             EEEEEcCCeEEEEEc
Q 003271          781 LLVIGCYETLELWNM  795 (835)
Q Consensus       781 L~sgs~dg~I~IwDl  795 (835)
                      +++++.+|.|..++-
T Consensus       306 ~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          306 GFILGQKGILLRYVT  320 (327)
T ss_dssp             EEEECSTTEEEEECC
T ss_pred             eEEEcCCceEEEEcC
Confidence            778888888777653

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.81  E-value=0.0068  Score=65.14  Aligned_cols=199  Identities=9%  Similarity=0.090  Sum_probs=123.0

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCeEEEE-ecc----CC--CCeEEEEE---CCCCCEEEEEE-----
Q 003271          553 ASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKST-LEE----HT--QWITDVRF---SPSLSRLATSS-----  616 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t~~~i~~-l~~----h~--~~V~sv~f---spdg~~Latgs-----  616 (835)
                      ...---.|++|++....|..++ ..++|..||...+..... +.+    ..  ..+..|.|   .++++++++..     
T Consensus        10 ~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af   89 (334)
T 2p9w_A           10 VKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSF   89 (334)
T ss_dssp             CTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTT
T ss_pred             CcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccc
Confidence            3333456789988555555555 789999999986544333 322    11  13679999   68877777544     


Q ss_pred             --------CCCeEEEEecC---CCCceeEE-eec-----------CCCCeEEEEEcCCCCcEEEEEeCC-CcEEEEECCC
Q 003271          617 --------ADRTVRVWDTE---NPDYSLRT-FTG-----------HSTTVMSLDFHPSKEDLLCSCDNN-SEIRYWSINN  672 (835)
Q Consensus       617 --------~Dg~I~IWDl~---t~~~~~~~-~~~-----------h~~~V~sl~fsp~g~~ll~sgs~D-g~I~iwDl~s  672 (835)
                              .+..|..||+.   +++..... +..           -......++..++|+ ..++++.. +.|..++...
T Consensus        90 ~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn-aYVt~s~~~~~I~rV~pdG  168 (334)
T 2p9w_A           90 NFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGN-SYVAFALGMPAIARVSADG  168 (334)
T ss_dssp             CTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSC-EEEEEEESSCEEEEECTTS
T ss_pred             cccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCC-EEEeCCCCCCeEEEEeCCC
Confidence                    26789999998   66542222 111           112478999999987 55577777 7887777764


Q ss_pred             CeeeeEee--------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE--EEEE-cCC---CCCeEEE-EEcCCCCEE
Q 003271          673 GSCAGVFK--------SGATQMRFQPRLGRILAAAIENYISILDVETQVC--RLKL-QGH---KNQVHSV-CWNTSGEYL  737 (835)
Q Consensus       673 ~~~~~~~~--------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~--i~~l-~~h---~~~I~sl-~fspdg~~L  737 (835)
                      ......+.        .+.+.++++|++..|++....+.|..+|+.+...  +..- .+.   -.....+ ..-.+|+.|
T Consensus       169 ~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vl  248 (334)
T 2p9w_A          169 KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESV  248 (334)
T ss_dssp             CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEE
T ss_pred             CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEE
Confidence            42221111        2366899999999999988899999999985433  2111 021   1223443 333467775


Q ss_pred             EEEe--CCeEEEEEcCC
Q 003271          738 ASVS--DELVRVWSIGS  752 (835)
Q Consensus       738 asgs--Dg~I~IwDl~t  752 (835)
                      +++.  .+.+.+.+...
T Consensus       249 lV~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          249 LVGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEEETTEEEEEECSST
T ss_pred             EEEcCCCCEEEEECCCC
Confidence            5554  55555555443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.78  E-value=0.0068  Score=66.15  Aligned_cols=222  Identities=12%  Similarity=0.064  Sum_probs=122.7

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-eeEEe---ecCCCCeEEEEEcCC---CCcEEEEEeCC-----CcE
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDNN-----SEI  665 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-~~~~~---~~h~~~V~sl~fsp~---g~~ll~sgs~D-----g~I  665 (835)
                      .....++|.|++++++ +..+|.|++++  ++.. .+..+   .........|+|+|+   +..++++....     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCCccEE
Confidence            3567999999998554 56679999998  3321 11111   122356889999998   55566555433     678


Q ss_pred             EEEECCCCee------eeEee------cCceEEEEecCCCEEEEEEc-------------CCcEEEEECCCC--------
Q 003271          666 RYWSINNGSC------AGVFK------SGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ--------  712 (835)
Q Consensus       666 ~iwDl~s~~~------~~~~~------~~i~~l~fsp~~~~ll~~s~-------------dg~I~IwDl~t~--------  712 (835)
                      ..|+...+..      +..+.      .....++|.|++..+++.+.             .+.|.-++....        
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~  187 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFL  187 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTT
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCccc
Confidence            8888774321      11122      12457999999865554322             145666665430        


Q ss_pred             ------eEEEEEcCCCCCeEEEEEcC-CCCEEEEEe-CCeE------EEEEcCCCCC---------------cceEEEee
Q 003271          713 ------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS-DELV------RVWSIGSGSK---------------GECIHELS  763 (835)
Q Consensus       713 ------~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs-Dg~I------~IwDl~t~~~---------------~~~i~~l~  763 (835)
                            ..+.. .++ .....++|+| ++.++++-. .+.+      .|.-+..+..               ...+..+ 
T Consensus       188 ~~~~~~~~i~a-~G~-rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~-  264 (352)
T 2ism_A          188 GRRGARPEVYS-LGH-RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW-  264 (352)
T ss_dssp             TCTTSCTTEEE-ECC-SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC-
T ss_pred             CCCCCCccEEE-EcC-CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec-
Confidence                  01111 122 2356789999 677666544 2331      2333333220               1122233 


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc-------EEEeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK-------TLTLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~-------~~~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                      .+......++| .++..+++.-..+.|...+++...       ...+..-...+.++++.|||.++++..
T Consensus       265 ~~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~  333 (352)
T 2ism_A          265 PQGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTS  333 (352)
T ss_dssp             TTCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEEC
T ss_pred             CCCCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEe
Confidence            22334567777 355544444445578888776432       122223346789999999998777664

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.76  E-value=0.0018  Score=70.90  Aligned_cols=192  Identities=9%  Similarity=0.067  Sum_probs=109.6

Q ss_pred             eEEEEECCCCCEEEEE------------ECCCeEEEEecCCCCceeE--Eeec-----CCCCeEEEEEcC--CCCc-EEE
Q 003271          600 ITDVRFSPSLSRLATS------------SADRTVRVWDTENPDYSLR--TFTG-----HSTTVMSLDFHP--SKED-LLC  657 (835)
Q Consensus       600 V~sv~fspdg~~Latg------------s~Dg~I~IWDl~t~~~~~~--~~~~-----h~~~V~sl~fsp--~g~~-ll~  657 (835)
                      ..+|...++|..++++            ..+|.|.++|..+......  .+.+     ..-....|.+.+  ++.. +++
T Consensus        52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            4456666665444443            2689999999984322122  2222     223677788766  3443 444


Q ss_pred             EEeC--CCcEEEEECCCC--ee--eeEeec----CceEEEEecCCCEEEEEEc-----------------CCcEEEEECC
Q 003271          658 SCDN--NSEIRYWSINNG--SC--AGVFKS----GATQMRFQPRLGRILAAAI-----------------ENYISILDVE  710 (835)
Q Consensus       658 sgs~--Dg~I~iwDl~s~--~~--~~~~~~----~i~~l~fsp~~~~ll~~s~-----------------dg~I~IwDl~  710 (835)
                      +-..  +..|.+|++...  ..  +..+.+    ....+.+.++|..+++...                 .+.|+.+|..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            4333  457777776543  22  222322    2678889998775554331                 2456666653


Q ss_pred             CCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeC-CCCEEEEEEcC
Q 003271          711 TQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHP-TFPSLLVIGCY  787 (835)
Q Consensus       711 t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fsp-dg~~L~sgs~d  787 (835)
                        +...... .-...+.++|+||+++|+.+.  .+.|..|++...........+ ......-.+++.+ +|.+.+++..+
T Consensus       212 --~~~~~~~-~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~lwva~~~~  287 (355)
T 3sre_A          212 --DVRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDLWVGCHPN  287 (355)
T ss_dssp             --CCEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCEEEEEESC
T ss_pred             --eEEEeec-CCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcEEEEecCC
Confidence              2222222 234568899999999888776  779999999743222222333 2356678899999 58866655544


Q ss_pred             C-eEEEEEc
Q 003271          788 E-TLELWNM  795 (835)
Q Consensus       788 g-~I~IwDl  795 (835)
                      + .|..|+-
T Consensus       288 g~~v~~~~P  296 (355)
T 3sre_A          288 GMRIFFYDA  296 (355)
T ss_dssp             HHHHHSCCT
T ss_pred             ceEEEEECC
Confidence            3 4444443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.74  E-value=0.066  Score=64.34  Aligned_cols=266  Identities=8%  Similarity=0.050  Sum_probs=154.1

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-cc----CCCCeEEEEECCCCCEEEEEECCCeEEEEecCCC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-EE----HTQWITDVRFSPSLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-~~----h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      ...|.++....+|.+.+ |+. +-|..|+..+.+..... ..    ....|.++....++..|..|+. +-|..+|..+.
T Consensus       145 ~~~i~~i~~d~~g~lWi-gt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~  221 (758)
T 3ott_A          145 NNTIYSIIRTKDNQIYV-GTY-NGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG  221 (758)
T ss_dssp             CSCEEEEEECTTCCEEE-EET-TEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred             CCeEEEEEEcCCCCEEE-EeC-CCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence            34688998888887655 444 45888898776654221 11    1234888888777766655654 45888888765


Q ss_pred             CceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEE
Q 003271          630 DYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       630 ~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s  699 (835)
                      .. ..........|.++....++. +. .|+. +-|.+++..+.+......          ..+.++....++. |-+|+
T Consensus       222 ~~-~~~~~l~~~~i~~i~~d~~g~-lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWiGT  296 (758)
T 3ott_A          222 QI-KQTEAFHNNSIKSLALDGNGD-LL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHN-IWLGT  296 (758)
T ss_dssp             EE-EEEEEEEEEEEEEEEECTTCC-EE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCC-EEEEE
T ss_pred             eE-EeccCCCCCeEEEEEEcCCCC-EE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCC-EEEEe
Confidence            42 111111234588888877765 33 3443 458888887654432211          1256666666544 55566


Q ss_pred             cCCcEEEEECCCCeEEEEEc-----CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEee-------cCCC
Q 003271          700 IENYISILDVETQVCRLKLQ-----GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELS-------CTGN  767 (835)
Q Consensus       700 ~dg~I~IwDl~t~~~i~~l~-----~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~-------~~~~  767 (835)
                      ..| +.++.....-......     .....|.+++-..+|.+.+...+ -+..++..++... .+..+.       ....
T Consensus       297 ~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiGt~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~l~~~  373 (758)
T 3ott_A          297 DYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDSKGFYWFGGAN-GLIRFTDPAGERH-DAIWYRMGDKTYPLSHN  373 (758)
T ss_dssp             SSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEEETT-EEEEESCTTSSCC-CCEEECTTCSSSCCSCS
T ss_pred             CCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcCCCCEEEeeCC-cceeecccccccc-eeEEeccCCcCCCCCCC
Confidence            655 5555432211111111     12346899998888887776534 4666765543111 111111       1234


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec--c-----CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS--A-----HDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~--~-----h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .|.++.-..++. |.+|+ ++.|..||..+++...+.  .     ....|.++....++.+.+ |+..+-|.+|
T Consensus       374 ~v~~i~~d~~g~-lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~  444 (758)
T 3ott_A          374 RIRHIYEDKEQQ-LWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVV  444 (758)
T ss_dssp             CEEEEEECTTSC-EEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEE
T ss_pred             ceEEEEECCCCC-EEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEE
Confidence            588888877776 55666 568999999888765332  1     234588888777765444 5655445554

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.73  E-value=0.0025  Score=67.34  Aligned_cols=229  Identities=10%  Similarity=0.042  Sum_probs=117.1

Q ss_pred             CCCEEEEEe-CC-----CeEEEEEcCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCC--
Q 003271          566 DGKLLATGG-HD-----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPD--  630 (835)
Q Consensus       566 dg~~Lasgs-~D-----g~I~VWd~~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~--  630 (835)
                      ++.+++.|+ .+     ..+.+||..+.+-...  +.........+.+  ++.+++.|+.+     ..+.+||+.+..  
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~   91 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--HDRIYVIGGYDGRSRLSSVECLDYTADEDG   91 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTCCTTC
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--CCEEEEEcCCCCCccCceEEEEECCCCCCC
Confidence            445666666 32     3688999887654322  1111111222222  56677777754     468999998766  


Q ss_pred             -ceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc
Q 003271          631 -YSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       631 -~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~  700 (835)
                       .... .+........++.+  + ..+++.|+.+     ..+.+||+.+.+....-.  .. ....+...++..++.|+.
T Consensus        92 ~W~~~~~~p~~r~~~~~~~~--~-~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  168 (301)
T 2vpj_A           92 VWYSVAPMNVRRGLAGATTL--G-DMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVASGVIYCLGGY  168 (301)
T ss_dssp             CCEEECCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEETTEEEEECCB
T ss_pred             eeEECCCCCCCccceeEEEE--C-CEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEECCEEEEECCC
Confidence             3211 11111111222222  3 4566677643     368899998876543322  11 111222225555566654


Q ss_pred             C-----CcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCc
Q 003271          701 E-----NYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNK  768 (835)
Q Consensus       701 d-----g~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~  768 (835)
                      +     ..+.+||+.+.+-...-.. ....-.+++. -++++++.|+ +     ..|.+||+.+..- ..+..+......
T Consensus       169 ~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r~~  246 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVAL-LNDHIYVVGGFDGTAHLSSVEAYNIRTDSW-TTVTSMTTPRCY  246 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBCCCEEEEETTTTEE-EEECCCSSCCBS
T ss_pred             CCCcccceEEEEeCCCCcEEeCCCCCcccccceEEE-ECCEEEEEeCCCCCcccceEEEEeCCCCcE-EECCCCCCcccc
Confidence            3     5689999987754432111 1111112222 2566666665 3     3689999987521 111111111111


Q ss_pred             eEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEe
Q 003271          769 FHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL  803 (835)
Q Consensus       769 V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l  803 (835)
                      ...+.+  ++..++.|+.+     ..|.+||..+.+...+
T Consensus       247 ~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  284 (301)
T 2vpj_A          247 VGATVL--RGRLYAIAGYDGNSLLSSIECYDPIIDSWEVV  284 (301)
T ss_dssp             CEEEEE--TTEEEEECCBCSSSBEEEEEEEETTTTEEEEE
T ss_pred             eeEEEE--CCEEEEEcCcCCCcccccEEEEcCCCCeEEEc
Confidence            222222  56666666655     3688999988776533

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.69  E-value=0.00013  Score=87.42  Aligned_cols=211  Identities=9%  Similarity=0.026  Sum_probs=129.3

Q ss_pred             CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCC----CeeeeEee---cCceEEEEec
Q 003271          618 DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN----GSCAGVFK---SGATQMRFQP  690 (835)
Q Consensus       618 Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s----~~~~~~~~---~~i~~l~fsp  690 (835)
                      .+.|++.++.+...  ..+......+..|+|++.+..|+++-...+.|+.+++..    ......+.   .....+++.+
T Consensus       385 ~~~I~~id~~~~~~--~~~~~~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~  462 (699)
T 1n7d_A          385 RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDW  462 (699)
T ss_dssp             TTC-CEECTTSCCE--ECCSCCCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCC
T ss_pred             ccceEEEeCCCCcc--eeeeccCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEe
Confidence            45688888876543  222223345778999988777777766778999999875    22222222   1245688887


Q ss_pred             CCCEEEEEE-cCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCcceEEEeecCC
Q 003271          691 RLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTG  766 (835)
Q Consensus       691 ~~~~ll~~s-~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~~~~~~i~~l~~~~  766 (835)
                      .++.|+++. ..+.|.++++........+.........|+++|.+.+|+.+.  . +.|.++++..... .  ..+....
T Consensus       463 ~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~-~--~l~~~~l  539 (699)
T 1n7d_A          463 IHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDI-Y--SLVTENI  539 (699)
T ss_dssp             SSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCC-C--EESCSSC
T ss_pred             eCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCe-e--EEEeCCC
Confidence            666666654 457899999886654444433334567889998765555544  3 6788887754321 1  1112223


Q ss_pred             CceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcEEEecc---CCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          767 NKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTLSA---HDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       767 ~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~l~~---h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      .....|+|+|++..|+++.. .+.|.++++.......+..   .......|++..+ .++++....+.|..+
T Consensus       540 ~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~  610 (699)
T 1n7d_A          540 QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSA  610 (699)
T ss_dssp             SSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEE
T ss_pred             CCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEE
Confidence            45678999998777777765 4589999997654443332   2234456666553 455555555667665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.68  E-value=0.018  Score=62.94  Aligned_cols=223  Identities=13%  Similarity=0.073  Sum_probs=127.4

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe---ecCCCCeEEEEEcCC---CCcEEEEEeC---C----Cc
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF---TGHSTTVMSLDFHPS---KEDLLCSCDN---N----SE  664 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~---~~h~~~V~sl~fsp~---g~~ll~sgs~---D----g~  664 (835)
                      .....++|.|+++ |+++..+|.|+++|.. +...+..+   .........|+|+|+   +..++++...   +    ..
T Consensus        29 ~~P~~ia~~pdG~-l~V~e~~g~I~~~d~~-G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~  106 (354)
T 3a9g_A           29 EVPWSIAPLGGGR-YLVTERPGRLVLISPS-GKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNR  106 (354)
T ss_dssp             SCEEEEEEEETTE-EEEEETTTEEEEECSS-CEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEE
T ss_pred             CCCeEEEEcCCCe-EEEEeCCCEEEEEeCC-CceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceE
Confidence            4578999999997 4555667999999743 32112211   122356889999997   5556655442   3    56


Q ss_pred             EEEEECCCC--e-----ee-eEeec----CceEEEEecCCCEEEEEEc-------------CCcEEEEECCCC-------
Q 003271          665 IRYWSINNG--S-----CA-GVFKS----GATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-------  712 (835)
Q Consensus       665 I~iwDl~s~--~-----~~-~~~~~----~i~~l~fsp~~~~ll~~s~-------------dg~I~IwDl~t~-------  712 (835)
                      |..|+....  .     .+ ..+..    ....++|.|++..+++.+.             .+.|.-++....       
T Consensus       107 v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf  186 (354)
T 3a9g_A          107 VIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPF  186 (354)
T ss_dssp             EEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSS
T ss_pred             EEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCC
Confidence            888887654  1     11 11221    2457999999875555332             145666665432       


Q ss_pred             --eEEEEEcCCCCCeEEEEEcC-CCCEEEEEe--CC--eEEEEEcCCCCC---------------cceEEEeecCCCceE
Q 003271          713 --VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DE--LVRVWSIGSGSK---------------GECIHELSCTGNKFH  770 (835)
Q Consensus       713 --~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs--Dg--~I~IwDl~t~~~---------------~~~i~~l~~~~~~V~  770 (835)
                        ..+. ..++. ....++|++ +|.++++-.  +.  .|.+..  .+..               ...+..+........
T Consensus       187 ~~~~i~-a~G~r-np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~  262 (354)
T 3a9g_A          187 PNSPIW-SYGHR-NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPS  262 (354)
T ss_dssp             TTCCEE-EECCS-CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEE
T ss_pred             CCCcEE-EEccC-CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCc
Confidence              1121 12332 345799999 677666544  22  344432  2210               112233312234577


Q ss_pred             EEEEe-------CCCCEEEEEEcCCeEEEEEcCCC-cEE---Eec-cCCCCeeEEEEeCCCCEEEEEE
Q 003271          771 SCVFH-------PTFPSLLVIGCYETLELWNMTEN-KTL---TLS-AHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       771 sv~fs-------pdg~~L~sgs~dg~I~IwDl~~~-~~~---~l~-~h~~~V~~la~spdg~~LaSgs  826 (835)
                      .++|.       .++.++++.-..+.|..+++... +..   .+. .....+.+|++.|||.++++..
T Consensus       263 G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          263 GASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             ceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            88883       45654544445568999888753 332   222 2245789999999998777664

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.67  E-value=0.013  Score=62.99  Aligned_cols=206  Identities=10%  Similarity=0.061  Sum_probs=129.7

Q ss_pred             eccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeec----CC--CCeEEEEE---cCCCCcEEEEEe--
Q 003271          593 LEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTG----HS--TTVMSLDF---HPSKEDLLCSCD--  660 (835)
Q Consensus       593 l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~----h~--~~V~sl~f---sp~g~~ll~sgs--  660 (835)
                      +......-.+++|++....|+.++ ..++|..||...+......+.+    ..  ..+..|.|   .|++ .++++..  
T Consensus         8 ~~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~g-rL~vv~~~~   86 (334)
T 2p9w_A            8 VKVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSK-RLFAVMKNA   86 (334)
T ss_dssp             ECCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCC-EEEEEEEET
T ss_pred             ecCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCC-cEEEEEccc
Confidence            334444556889988655666665 7999999999855432222221    11  13579999   5874 4555443  


Q ss_pred             -----------CCCcEEEEECC---CCeeeeEee------c----------CceEEEEecCCCEEEEEEcC-CcEEEEEC
Q 003271          661 -----------NNSEIRYWSIN---NGSCAGVFK------S----------GATQMRFQPRLGRILAAAIE-NYISILDV  709 (835)
Q Consensus       661 -----------~Dg~I~iwDl~---s~~~~~~~~------~----------~i~~l~fsp~~~~ll~~s~d-g~I~IwDl  709 (835)
                                 .+..|..||+.   +++.+....      .          ....+++.++|+.+++++.. +.|..++.
T Consensus        87 ~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           87 KSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                       26789999999   777665443      1          36789999999999999998 88888888


Q ss_pred             CCCeEEEEEcC-----CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee--c---CCCceEEE-EEeCC
Q 003271          710 ETQVCRLKLQG-----HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS--C---TGNKFHSC-VFHPT  777 (835)
Q Consensus       710 ~t~~~i~~l~~-----h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~--~---~~~~V~sv-~fspd  777 (835)
                      ........+..     .....+.|++.|+|..|++.. ++.|..+|+...... .+. ..  +   .......+ ..-.+
T Consensus       167 dG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~-~v~-~~~~G~~~~~~~~dgilp~~~~  244 (334)
T 2p9w_A          167 DGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAW-PEP-VKINGDFGTLSGTEKIVTVPVG  244 (334)
T ss_dssp             TSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCC-CEE-CEESSCCCCCTTEEEEEEEEET
T ss_pred             CCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcce-eec-ccccCCcccccCcccccccccC
Confidence            75433322211     122367899999999888887 889999999853110 122 11  1   11223333 33446


Q ss_pred             CCEEEEEE-cCCeEEEEEcCCCcEE
Q 003271          778 FPSLLVIG-CYETLELWNMTENKTL  801 (835)
Q Consensus       778 g~~L~sgs-~dg~I~IwDl~~~~~~  801 (835)
                      |+.|+++. ..+.+.+.+.+..+..
T Consensus       245 G~vllV~~~~~~~~~l~S~DgW~sa  269 (334)
T 2p9w_A          245 NESVLVGARAPYAISFRSWDNWKSA  269 (334)
T ss_dssp             TEEEEEEEETTEEEEEECSSTTSEE
T ss_pred             CEEEEEEcCCCCEEEEECCCCccee
Confidence            77655554 4556666666554433

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.66  E-value=0.007  Score=65.60  Aligned_cols=179  Identities=11%  Similarity=0.182  Sum_probs=117.3

Q ss_pred             cEEEEEeCCCcEEEEECCCCeeeeEee-cCceEEEEecC----CCE--EEE-EEc---CCcEEEEECC--CCeEEEEEcC
Q 003271          654 DLLCSCDNNSEIRYWSINNGSCAGVFK-SGATQMRFQPR----LGR--ILA-AAI---ENYISILDVE--TQVCRLKLQG  720 (835)
Q Consensus       654 ~ll~sgs~Dg~I~iwDl~s~~~~~~~~-~~i~~l~fsp~----~~~--ll~-~s~---dg~I~IwDl~--t~~~i~~l~~  720 (835)
                      .++++....+-+.+||+ .++.+..+. +....+.+-|.    +..  +++ ...   ++.|.+|++.  ++. +..+..
T Consensus        41 s~ii~t~k~~gL~Vydl-~G~~l~~~~~g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~  118 (355)
T 3amr_A           41 SKLITTNKKSGLVVYSL-DGKMLHSYNTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTD  118 (355)
T ss_dssp             CEEEEEETTTEEEEEET-TSCEEEEECCSCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSC
T ss_pred             cEEEEEcCCCCEEEEcC-CCcEEEEccCCCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccc
Confidence            35667777889999999 788888776 44566655552    222  333 333   4789999773  333 444421


Q ss_pred             ------CC-CCeEEEEE--cCC-CC-EEEEEe-CCeEEEEEcCCC----CCcceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271          721 ------HK-NQVHSVCW--NTS-GE-YLASVS-DELVRVWSIGSG----SKGECIHELSCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       721 ------h~-~~I~sl~f--spd-g~-~Lasgs-Dg~I~IwDl~t~----~~~~~i~~l~~~~~~V~sv~fspdg~~L~sg  784 (835)
                            .. ..+..+|+  ++. +. |+++.. +|.+..|++...    ...+.++++.. ...+..|++.+....|+++
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l-gsq~EgcvvDd~~g~Lyv~  197 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM-NSQTEGMAADDEYGRLYIA  197 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC-SSCEEEEEEETTTTEEEEE
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC-CCCcceEEEcCCCCeEEEe
Confidence                  11 55667787  664 54 455555 899999998432    12345666664 4678899999999999999


Q ss_pred             EcCCeEEEEEcC-----CCcEEEeccC---CCCeeEEEEe--CCCC-EEEEEE-CCCcEEEeC
Q 003271          785 GCYETLELWNMT-----ENKTLTLSAH---DKLVSSLAAS--TVNG-MVASAS-HDKCVKIWK  835 (835)
Q Consensus       785 s~dg~I~IwDl~-----~~~~~~l~~h---~~~V~~la~s--pdg~-~LaSgs-~DG~V~IWd  835 (835)
                      -.+..|..|+.+     +++.+...+.   ...+..|++-  ++++ +|+++| .+.++.|||
T Consensus       198 eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vyd  260 (355)
T 3amr_A          198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYD  260 (355)
T ss_dssp             ETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             cccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEE
Confidence            999888888865     3445543322   2468888884  4555 566555 566787775

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.64  E-value=0.011  Score=64.51  Aligned_cols=230  Identities=8%  Similarity=0.062  Sum_probs=126.4

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-eeE----EeecCCCCeEEEEEcCC---CCcEEEEEeC-------C
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-SLR----TFTGHSTTVMSLDFHPS---KEDLLCSCDN-------N  662 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-~~~----~~~~h~~~V~sl~fsp~---g~~ll~sgs~-------D  662 (835)
                      ...+.|+|.|++++|+++...|.|++++...... .+.    .+.........|+|+|+   +..++++-..       .
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            3467999999998455556789999998542110 011    11122345789999996   5556555433       2


Q ss_pred             CcEEEEECCCC--e--eeeE-e---e------cCceEEEEecCCCEEEEEEcC--------------CcEEEEECCCC--
Q 003271          663 SEIRYWSINNG--S--CAGV-F---K------SGATQMRFQPRLGRILAAAIE--------------NYISILDVETQ--  712 (835)
Q Consensus       663 g~I~iwDl~s~--~--~~~~-~---~------~~i~~l~fsp~~~~ll~~s~d--------------g~I~IwDl~t~--  712 (835)
                      ..|..|++...  .  .... +   .      .....++|.|++ .|+++..+              +.|.-+|....  
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            35777776533  1  1111 1   1      114579999997 45555433              45777776532  


Q ss_pred             ------------eEEEEEcCCCCCeEEEEEcC-CCCEEEEEe--CCeEEEEEcCCCCC----------------------
Q 003271          713 ------------VCRLKLQGHKNQVHSVCWNT-SGEYLASVS--DELVRVWSIGSGSK----------------------  755 (835)
Q Consensus       713 ------------~~i~~l~~h~~~I~sl~fsp-dg~~Lasgs--Dg~I~IwDl~t~~~----------------------  755 (835)
                                  ..+.. .++ .....++|++ +|.++++-.  ++.=.|.-+..+..                      
T Consensus       177 ~~npf~~~~~~~~~i~a-~G~-rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~  254 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWS-YGI-RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKG  254 (353)
T ss_dssp             TTCTTTTSTTSCTTEEE-ECC-SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCB
T ss_pred             CCCCCcCCCCCCccEEE-EcC-cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccC
Confidence                        11111 122 3467899999 566555433  22222322222110                      


Q ss_pred             ------cceEEEeecCCCceEEEEEeC-------CCCEEEEEEcCCeEEEEEcCCCcEE---Eec-cCCCCeeEEEEeCC
Q 003271          756 ------GECIHELSCTGNKFHSCVFHP-------TFPSLLVIGCYETLELWNMTENKTL---TLS-AHDKLVSSLAASTV  818 (835)
Q Consensus       756 ------~~~i~~l~~~~~~V~sv~fsp-------dg~~L~sgs~dg~I~IwDl~~~~~~---~l~-~h~~~V~~la~spd  818 (835)
                            ...+..+. +...+..++|..       ++.++++.-..+.|...+++.++..   .+. .....+..|++.||
T Consensus       255 ~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pd  333 (353)
T 2g8s_A          255 EIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPD  333 (353)
T ss_dssp             SSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTT
T ss_pred             CCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCC
Confidence                  01112222 223567777764       3555555445668888888766544   222 22357999999999


Q ss_pred             CCEEEEEE-CCCcE
Q 003271          819 NGMVASAS-HDKCV  831 (835)
Q Consensus       819 g~~LaSgs-~DG~V  831 (835)
                      |.++++.. .+|.|
T Consensus       334 G~lyv~td~~~g~I  347 (353)
T 2g8s_A          334 GYLYVLTDESSGEL  347 (353)
T ss_dssp             SCEEEEECSTTEEE
T ss_pred             CcEEEEEeCCCCEE
Confidence            98766543 35544

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.62  E-value=0.14  Score=56.78  Aligned_cols=246  Identities=9%  Similarity=0.139  Sum_probs=152.5

Q ss_pred             CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l  655 (835)
                      +..|.|.|+.+...+.+-.-   ..-+.-.+|..+.||.-. ..++.|+|+++... +..+.- ...|.-=.|-.+.. +
T Consensus        47 ~~~vvIiDl~~~~~~~rrpi---~AdsAIMnP~~~iiALra-g~~lQiFnle~K~k-lks~~~-~e~VvfWkWis~~~-l  119 (494)
T 1bpo_A           47 QAQVVIIDMNDPSNPIRRPI---SADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-V  119 (494)
T ss_dssp             CCEEEEEETTSTTSCEEEEC---CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEE-EEEEEC-SSCCCEEEEEETTE-E
T ss_pred             CCeEEEEECCCCCcceeccc---ccceeeeCCCCcEEEEec-CCeEEEEchHHhhh-hcceec-CCCceEEEecCCCe-E
Confidence            34788889887543322111   112345788877777765 67999999998654 444443 34566666665532 3


Q ss_pred             EEEEeCCCcEEEEECCC-CeeeeEeec-------CceEEEEecCCCEEEEEEc-------CCcEEEEECCCCeEEEEEcC
Q 003271          656 LCSCDNNSEIRYWSINN-GSCAGVFKS-------GATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG  720 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s-~~~~~~~~~-------~i~~l~fsp~~~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~  720 (835)
                      .+.+  +..|+.|++.. ..+++.|.-       .+...+.+++.++++..+-       .|.+.+|..+.+. ...+++
T Consensus       120 ~lVT--~taVyHWsi~~~s~P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieG  196 (494)
T 1bpo_A          120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  196 (494)
T ss_dssp             EEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECC
T ss_pred             EEEc--CCeeEEecccCCCCchhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchhee
Confidence            3333  67899999974 344555542       2566677888888776553       3678899888653 345666


Q ss_pred             CCCCeEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCC-----CcceEEEee----cCCCceEEEEEeCCCCEEEEE
Q 003271          721 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGS-----KGECIHELS----CTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       721 h~~~I~sl~fspdg---~~Lasgs----Dg~I~IwDl~t~~-----~~~~i~~l~----~~~~~V~sv~fspdg~~L~sg  784 (835)
                      |......+.+..+.   .+++.+.    .+.+.|.++....     ..+....+.    ...+-..++..++....++..
T Consensus       197 haa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyvi  276 (494)
T 1bpo_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (494)
T ss_dssp             SEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEE
Confidence            65544444332211   2344444    2699999996531     111111111    123456788899999999999


Q ss_pred             EcCCeEEEEEcCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          785 GCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       785 s~dg~I~IwDl~~~~~~~-l~~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                      +..|.|++||++++.++. -.-....|..-+.+....-++.....|.|
T Consensus       277 TK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqV  324 (494)
T 1bpo_A          277 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQV  324 (494)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEE
T ss_pred             ecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceE
Confidence            999999999999999883 33344556555555555555555566654

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.61  E-value=0.041  Score=59.83  Aligned_cols=231  Identities=12%  Similarity=0.104  Sum_probs=130.6

Q ss_pred             EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce-eEEe----ecCCCCeEEEEEcCC---CCcEEEEE--eC
Q 003271          592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTF----TGHSTTVMSLDFHPS---KEDLLCSC--DN  661 (835)
Q Consensus       592 ~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~-~~~~----~~h~~~V~sl~fsp~---g~~ll~sg--s~  661 (835)
                      .+...-...+.|+|.|++++|++--..|.|++++..++... +..+    .........|+|+|+   +..++++-  ..
T Consensus        26 ~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~  105 (347)
T 3das_A           26 TVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSAS  105 (347)
T ss_dssp             EEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSS
T ss_pred             EeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCC
Confidence            33333456789999999987777655899999986654421 1111    223456889999995   34444432  24


Q ss_pred             CCcEEEEECCCC----------eee-eEee----cCceEEEEecCCCEEEEEEc-------------CCcEEEEECCCC-
Q 003271          662 NSEIRYWSINNG----------SCA-GVFK----SGATQMRFQPRLGRILAAAI-------------ENYISILDVETQ-  712 (835)
Q Consensus       662 Dg~I~iwDl~s~----------~~~-~~~~----~~i~~l~fsp~~~~ll~~s~-------------dg~I~IwDl~t~-  712 (835)
                      ++.|.-|.+..+          +.+ ..+.    .....+.|.|++..+++.+.             .|.|.-++.... 
T Consensus       106 ~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~i  185 (347)
T 3das_A          106 DNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEP  185 (347)
T ss_dssp             SEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSB
T ss_pred             CCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCc
Confidence            556777766541          111 1122    12456999999876666432             255655665432 


Q ss_pred             --------eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC---------------cceEEEeecCCC
Q 003271          713 --------VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK---------------GECIHELSCTGN  767 (835)
Q Consensus       713 --------~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~---------------~~~i~~l~~~~~  767 (835)
                              ..+. -.+|. ....++|+|+|.++++-.  |+.-.|.-+..+..               ...+..+..+..
T Consensus       186 p~~nPf~~~~i~-a~G~R-Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~  263 (347)
T 3das_A          186 APGNPFPGSPVY-SYGHR-NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEA  263 (347)
T ss_dssp             CTTCSSTTCCEE-EBCCS-BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTC
T ss_pred             cCCCCCCCCeEE-eeCCC-CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCC
Confidence                    1122 22343 345789999988776654  44333333333211               112233332223


Q ss_pred             ceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcE----E-EeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          768 KFHSCVFHPTFPSLLVIGC-YETLELWNMTENKT----L-TLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~----~-~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                      ....++|.. +. ++.+.. .+.|..+.+.....    . .+.+....+.+|++.|||.++++.+
T Consensus       264 ap~G~~~~~-g~-~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          264 SPSGIAYAE-GS-VWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CEEEEEEET-TE-EEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCcceEEEc-Cc-eeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            566777763 43 444444 44676667655432    2 2334457899999999998777654

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=97.59  E-value=0.047  Score=68.79  Aligned_cols=271  Identities=13%  Similarity=0.102  Sum_probs=147.9

Q ss_pred             CCCEEEEEEeCC------CCEEEEEeC-CCeEEEEEcCCCeEEEEeccC-CCCeEEEEEC--CCCCEEEEEECCCeEEEE
Q 003271          555 TSKVESCHFSPD------GKLLATGGH-DKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--PSLSRLATSSADRTVRVW  624 (835)
Q Consensus       555 ~~~V~sl~fSpd------g~~Lasgs~-Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fs--pdg~~Latgs~Dg~I~IW  624 (835)
                      .+.|.|+++.+.      ++++|+|.. |++|+|+++.+.+.+....-. .....++.+.  ....+|..|-.||.+..+
T Consensus       553 ~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~  632 (1158)
T 3ei3_A          553 EHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYF  632 (1158)
T ss_dssp             SSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEE
T ss_pred             CCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEE
Confidence            457999999863      468999997 999999999987766443211 1233444332  234578899999988777


Q ss_pred             ecCC--CCcee--EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-cCceEE-EEecC--CCEEE
Q 003271          625 DTEN--PDYSL--RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-SGATQM-RFQPR--LGRIL  696 (835)
Q Consensus       625 Dl~t--~~~~~--~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-~~i~~l-~fsp~--~~~ll  696 (835)
                      .++.  +...-  ..+.+ ..++.-..+...+..-+++++ +....+|.-+..-....+. ..+..+ .|+..  .+-++
T Consensus       633 ~~d~~tg~l~d~r~~~LG-~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~~~~l~~s~l~~~~v~~~~~F~se~~~~g~v  710 (1158)
T 3ei3_A          633 GLNIETGLLSDRKKVTLG-TQPTVLRTFRSLSTTNVFACS-DRPTVIYSSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLA  710 (1158)
T ss_dssp             EECTTTCCEEEEEEEECC-SSCCEEEEEESSSCEEEEEES-SSCEEEEESSSSEEEEEBSSSCCCEEEEECCSSSTTEEE
T ss_pred             EEcCCCCccccceeEEcC-CCceEEEEEeeCCceeEEEEC-CCCEEEEEcCCceEEeccChHHhceEeccCcccCCCcEE
Confidence            6653  33211  12333 345554445444444444444 4444444433221111111 123233 34332  13344


Q ss_pred             EEEcCCcEEEEECCCC--eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C-------------------------------
Q 003271          697 AAAIENYISILDVETQ--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-D-------------------------------  742 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t~--~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D-------------------------------  742 (835)
                       +..++.++|..+.+.  -.+.++. -...+..++++|..+.++.+. +                               
T Consensus       711 -~~~~~~LrI~~i~~~~~~~~~~ip-L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1158)
T 3ei3_A          711 -LANNSTLTIGTIDEIQKLHIRTVP-LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKL  788 (1158)
T ss_dssp             -EECSSCEEEEEECCSSSEEEEEEE-CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCC
T ss_pred             -EEcCCceEEEEecccCCeeEEEEe-CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhccccccc
Confidence             344566888876532  2233333 345677788877666544332 1                               


Q ss_pred             ------------------CeEEEEEcCCCCCcceEEEeecC-CCceEEEE---EeCC-CCEEEEEE----------cCCe
Q 003271          743 ------------------ELVRVWSIGSGSKGECIHELSCT-GNKFHSCV---FHPT-FPSLLVIG----------CYET  789 (835)
Q Consensus       743 ------------------g~I~IwDl~t~~~~~~i~~l~~~-~~~V~sv~---fspd-g~~L~sgs----------~dg~  789 (835)
                                        ..|+++|-.+.   +.+..+.-. ...+.+++   |..+ ..+|++|+          ..|.
T Consensus       789 ~~~~~~~~~~~~g~~~~~s~i~lidp~t~---~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gr  865 (1158)
T 3ei3_A          789 FSSSTAPHETSFGEEVEVHNLLIIDQHTF---EVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGR  865 (1158)
T ss_dssp             C----------CCCEEEEEEEEEEETTTC---CEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEE
T ss_pred             ccccccCchhhcCCceeeEEEEEEeCCCC---eEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceE
Confidence                              13555555444   333333322 22334443   3222 46888887          2468


Q ss_pred             EEEEEcCCCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          790 LELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       790 I~IwDl~~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |++|++.++++.  .....++.|++++-- +|++|++.  ..+|+||+
T Consensus       866 i~vf~v~~~kL~lv~~~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~  910 (1158)
T 3ei3_A          866 IVVFQYSDGKLQTVAEKEVKGAVYSMVEF-NGKLLASI--NSTVRLYE  910 (1158)
T ss_dssp             EEEEEEETTEEEEEEEEEESSCEEEEEEE-TTEEEEEE--TTEEEEEE
T ss_pred             EEEEEEECCEEEEEEEEEcCCcCEEEeee-CCEEEEEc--CCEEEEEE
Confidence            999999765544  333557889998854 35444433  46788875

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.53  E-value=0.012  Score=62.08  Aligned_cols=225  Identities=8%  Similarity=0.033  Sum_probs=116.0

Q ss_pred             CEEEEEeC--CCeEEEEEcCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEECC----CeEEEEecCCCCceeEE-eec
Q 003271          568 KLLATGGH--DKKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTENPDYSLRT-FTG  638 (835)
Q Consensus       568 ~~Lasgs~--Dg~I~VWd~~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~D----g~I~IWDl~t~~~~~~~-~~~  638 (835)
                      .+++.|+.  ...+.+||..+.+-...  +......-..+.+  ++.+++.|+.+    ..+.+||+.+....... +..
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~   90 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW--DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT   90 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE--TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE--CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence            34555654  35789999887654322  1111112222223  56677777754    57889998876532111 111


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc---------
Q 003271          639 HSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI---------  700 (835)
Q Consensus       639 h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~---------  700 (835)
                      .......+.+  + ..+++.|+.+      ..+.+||+.+.+....-.  .+ ....+...++..++.|+.         
T Consensus        91 ~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  167 (306)
T 3ii7_A           91 PRDSLAACAA--E-GKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRV  167 (306)
T ss_dssp             CCBSCEEEEE--T-TEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEE
T ss_pred             cccceeEEEE--C-CEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEECCEEEEECCCCCCCCcccc
Confidence            1111222222  3 4577677654      468999998876543321  11 111112234455555543         


Q ss_pred             CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          701 ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      -..+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ +     ..|.+||+.+.. ...+..+.........+.
T Consensus       168 ~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          168 LNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNE-WKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTE-EEECCCCSCCBSCCEEEE
T ss_pred             cceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCc-EEECCCCCCCccceeEEE
Confidence            34588999988754332111 11111222222 566666655 2     368999988752 111111111112223333


Q ss_pred             EeCCCCEEEEEEcC-----CeEEEEEcCCCcEE
Q 003271          774 FHPTFPSLLVIGCY-----ETLELWNMTENKTL  801 (835)
Q Consensus       774 fspdg~~L~sgs~d-----g~I~IwDl~~~~~~  801 (835)
                      +  ++..+++|+.+     ..|.+||..+.+..
T Consensus       246 ~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          246 V--GSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             E--TTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             E--CCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            3  56667777754     47999999988765

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.52  E-value=0.18  Score=55.81  Aligned_cols=234  Identities=13%  Similarity=0.179  Sum_probs=156.1

Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC
Q 003271          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h  639 (835)
                      +.-.+|..+.||.=. ..++.|||+++...++.+.-.+ .|.-=+|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus        70 sAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e-~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD-DVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS-CCCEEEEEET-TEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC-CceEEEecCC-CeEEEEc-CCeeEEecccCCCCchhheecc
Confidence            345677777777655 6899999999999888876544 4555566543 3455443 5679999998766677777766


Q ss_pred             C----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEeecCceEEE-EecCC----CEEEEEE-c---
Q 003271          640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSGATQMR-FQPRL----GRILAAA-I---  700 (835)
Q Consensus       640 ~----~~V~sl~fsp~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~i~~l~-fsp~~----~~ll~~s-~---  700 (835)
                      .    ..|..-..+++.+.++++|-      -.|.+.+|..+.+. ...+.++..+.. +-.++    ..+++-. .   
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  224 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  224 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC-EEEECCSEEEEEEEECTTCSSEEEEEEEEECSTT
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc-cchheeeeeeeEEEecCCCCCCceEEEEEEecCC
Confidence            4    45777778899888887764      24678889887543 333444433322 22222    1233333 2   


Q ss_pred             CCcEEEEECCCC--------eEEEE-EcC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271          701 ENYISILDVETQ--------VCRLK-LQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       701 dg~I~IwDl~t~--------~~i~~-l~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                      .+.++|.++...        +.... +..   -..-..++..++...+++..+ -|.|++||+.++   .++..-.....
T Consensus       225 g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTg---t~i~~nrIs~~  301 (494)
T 1bpo_A          225 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE  301 (494)
T ss_dssp             CCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred             CcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccc---eeeeeecccCC
Confidence            278999998542        11111 111   133455778888877888777 999999999999   78887777777


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      .|...+.+....-+++....|.|.-..+++..++
T Consensus       302 ~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~iv  335 (494)
T 1bpo_A          302 TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (494)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHH
T ss_pred             ceEEecccCCCCcEEEEccCceEEEEEEccccch
Confidence            7777777776667777788887777777665543

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.52  E-value=0.0058  Score=64.54  Aligned_cols=229  Identities=11%  Similarity=0.025  Sum_probs=114.5

Q ss_pred             CCEEEEEeCC----CeEEEEEcCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEECC-----CeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSAD-----RTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~D----g~I~VWd~~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~D-----g~I~IWDl~t~~~~~~~  635 (835)
                      +.+++.|+.+    ..+.+||..+.+-...  +......-..+.+  ++.+++.|+.+     ..+.+||..+.......
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~   93 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVA   93 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEEC
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeCC
Confidence            4455566543    4588899887654332  1111111122222  56677777654     35888998876532111


Q ss_pred             -eecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc------
Q 003271          636 -FTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI------  700 (835)
Q Consensus       636 -~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~------  700 (835)
                       +.........+.+  + ..+++.|+.++     .+.+||+.+.+....-.  .. ....+...++..+++|+.      
T Consensus        94 ~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~  170 (302)
T 2xn4_A           94 NMRDRRSTLGAAVL--N-GLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDVASRQ  170 (302)
T ss_dssp             CCSSCCBSCEEEEE--T-TEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEETTTTE
T ss_pred             CCCccccceEEEEE--C-CEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCCCCCc
Confidence             1111111222222  3 35666666543     58889998876543322  11 111112224455555543      


Q ss_pred             -CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          701 -ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       701 -dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                       ...+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ +     ..+.+||+.+..- ..+..+........ +
T Consensus       171 ~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~~~~r~~~~-~  247 (302)
T 2xn4_A          171 CLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL-NNLLYAVGGHDGPLVRKSVEVYDPTTNAW-RQVADMNMCRRNAG-V  247 (302)
T ss_dssp             ECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCBSSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCE-E
T ss_pred             cccEEEEEeCCCCcEEECCCCccccccccEEEE-CCEEEEECCCCCCcccceEEEEeCCCCCE-eeCCCCCCccccCe-E
Confidence             24588999987654332111 11111222222 566666665 3     3689999887521 11111111111112 2


Q ss_pred             EEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEEec
Q 003271          773 VFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLS  804 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~  804 (835)
                      +. -++..+++|+.++     .|.+||..+.+...+.
T Consensus       248 ~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~  283 (302)
T 2xn4_A          248 CA-VNGLLYVVGGDDGSCNLASVEYYNPTTDKWTVVS  283 (302)
T ss_dssp             EE-ETTEEEEECCBCSSSBCCCEEEEETTTTEEEECS
T ss_pred             EE-ECCEEEEECCcCCCcccccEEEEcCCCCeEEECC
Confidence            22 2566666766553     5999999988776543

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.50  E-value=0.014  Score=63.65  Aligned_cols=221  Identities=12%  Similarity=0.075  Sum_probs=122.2

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEe-------ccCCCCeEEEEECCC---CCEEEEEE-C-------C
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL-------EEHTQWITDVRFSPS---LSRLATSS-A-------D  618 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l-------~~h~~~V~sv~fspd---g~~Latgs-~-------D  618 (835)
                      ....|+|.|||++|+++...|.|++++.+ +.....+       .........|+|+|+   +..|+++. .       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            47899999999834455567999999853 3322111       112345789999996   44554443 2       2


Q ss_pred             CeEEEEecCCCCce---eE-Eeec------CCCCeEEEEEcCCCCcEEEEEeC-------------CCcEEEEECCCCe-
Q 003271          619 RTVRVWDTENPDYS---LR-TFTG------HSTTVMSLDFHPSKEDLLCSCDN-------------NSEIRYWSINNGS-  674 (835)
Q Consensus       619 g~I~IWDl~t~~~~---~~-~~~~------h~~~V~sl~fsp~g~~ll~sgs~-------------Dg~I~iwDl~s~~-  674 (835)
                      ..|..|++......   .. .+..      .......|.|.|+|. ++++.+.             .|.|.-++....- 
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p  176 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGY-LFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIP  176 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSE-EEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCC
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCc-EEEEECCCCCCCccCCCCCCCeEEEEECCCCCCC
Confidence            35666766543110   11 1111      111245799999985 4444432             2467777765320 


Q ss_pred             -----------eeeEeec---CceEEEEecCCCEEEEEEcCC--cEEEEECCCC--------------------------
Q 003271          675 -----------CAGVFKS---GATQMRFQPRLGRILAAAIEN--YISILDVETQ--------------------------  712 (835)
Q Consensus       675 -----------~~~~~~~---~i~~l~fsp~~~~ll~~s~dg--~I~IwDl~t~--------------------------  712 (835)
                                 ....+..   ....++|++..+.|+++....  .-.|.-+..+                          
T Consensus       177 ~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~~~~  256 (353)
T 2g8s_A          177 DDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAKGEI  256 (353)
T ss_dssp             TTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCCBSS
T ss_pred             CCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCcccCCC
Confidence                       1122221   256789999666777765532  1122111111                          


Q ss_pred             -----eEEEEEcCCCCCeEEEEEcC-------CCCEEEEEe-CCeEEEEEcCCCCCcceEE--Ee-ecCCCceEEEEEeC
Q 003271          713 -----VCRLKLQGHKNQVHSVCWNT-------SGEYLASVS-DELVRVWSIGSGSKGECIH--EL-SCTGNKFHSCVFHP  776 (835)
Q Consensus       713 -----~~i~~l~~h~~~I~sl~fsp-------dg~~Lasgs-Dg~I~IwDl~t~~~~~~i~--~l-~~~~~~V~sv~fsp  776 (835)
                           .++..+. +...+..+.|..       +|.++++.. .+.|...++..+   ..+.  .+ ......+..+++.|
T Consensus       257 ~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~---~~~~~~~~~~~~~~rp~~v~~~p  332 (353)
T 2g8s_A          257 VAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD---KVTEDGRILTDRGQRIRDVRTGP  332 (353)
T ss_dssp             CTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT---EEEEEEEESGGGCCCEEEEEECT
T ss_pred             CCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC---eEeeeEEcccCCCCceeEEEECC
Confidence                 1112222 234567778764       466666555 778888888754   2222  12 23345789999999


Q ss_pred             CCCEEEE
Q 003271          777 TFPSLLV  783 (835)
Q Consensus       777 dg~~L~s  783 (835)
                      +|..+++
T Consensus       333 dG~lyv~  339 (353)
T 2g8s_A          333 DGYLYVL  339 (353)
T ss_dssp             TSCEEEE
T ss_pred             CCcEEEE
Confidence            9984443

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.40  E-value=0.17  Score=55.11  Aligned_cols=201  Identities=14%  Similarity=0.133  Sum_probs=119.4

Q ss_pred             EEecCCCCCEEEEEEeCCCCEEEEEe------------CCCeEEEEEcCC--CeEE-EEecc-----CCCCeEEEEECC-
Q 003271          549 QLIPASTSKVESCHFSPDGKLLATGG------------HDKKAVLWCTES--FTVK-STLEE-----HTQWITDVRFSP-  607 (835)
Q Consensus       549 ~~l~gH~~~V~sl~fSpdg~~Lasgs------------~Dg~I~VWd~~t--~~~i-~~l~~-----h~~~V~sv~fsp-  607 (835)
                      +.+++-......+++.++|..+++++            .+|.|.++|.++  .+.. ..+.+     ..-....|.+.+ 
T Consensus        43 ~~i~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d  122 (355)
T 3sre_A           43 NLVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFID  122 (355)
T ss_dssp             EECTTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEEC
T ss_pred             EEeCCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEEC
Confidence            33444333456777888885555541            689999999873  2321 12222     223567777755 


Q ss_pred             -CCC-EEEEEEC---CCeEEEEecCCCCcee---EEeecC-CCCeEEEEEcCCCCcEEEEEe-----------------C
Q 003271          608 -SLS-RLATSSA---DRTVRVWDTENPDYSL---RTFTGH-STTVMSLDFHPSKEDLLCSCD-----------------N  661 (835)
Q Consensus       608 -dg~-~Latgs~---Dg~I~IWDl~t~~~~~---~~~~~h-~~~V~sl~fsp~g~~ll~sgs-----------------~  661 (835)
                       ++. +|+++..   +.+|.||+++......   ..+.+. -...+.+.+.++|. ++++..                 .
T Consensus       123 ~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~-fyvt~~~~ftd~~~~~~e~~~~~~  201 (355)
T 3sre_A          123 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLA  201 (355)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCSSHHHHHHHHHTTCC
T ss_pred             CCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCC-EEecCCcEeCCcccccchhhccCC
Confidence             344 4544432   4688898887643322   223222 24578999999876 544543                 1


Q ss_pred             CCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc-CCcEEEEECCC-CeE--EEEEcCCCCCeEEEEEcC-CCCE
Q 003271          662 NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI-ENYISILDVET-QVC--RLKLQGHKNQVHSVCWNT-SGEY  736 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t-~~~--i~~l~~h~~~I~sl~fsp-dg~~  736 (835)
                      .|.|+.+|..+-+.+..--.....++|+|+++.++++.. .+.|+.||+.. +..  ...+ ........+++++ +|++
T Consensus       202 ~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~l  280 (355)
T 3sre_A          202 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGDL  280 (355)
T ss_dssp             CEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCCE
T ss_pred             ccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCcE
Confidence            255666666322221111134678999999999888875 58899999863 322  2233 2345678899999 5998


Q ss_pred             EEEEe-CC-eEEEEEcC
Q 003271          737 LASVS-DE-LVRVWSIG  751 (835)
Q Consensus       737 Lasgs-Dg-~I~IwDl~  751 (835)
                      .+++. ++ .|..|+..
T Consensus       281 wva~~~~g~~v~~~~P~  297 (355)
T 3sre_A          281 WVGCHPNGMRIFFYDAE  297 (355)
T ss_dssp             EEEEESCHHHHHSCCTT
T ss_pred             EEEecCCceEEEEECCC
Confidence            88776 43 55555543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.33  E-value=0.11  Score=56.42  Aligned_cols=236  Identities=8%  Similarity=0.059  Sum_probs=125.8

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE--EEe----ccCCCCeEEEEECCC---CCEEEEE-E-
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STL----EEHTQWITDVRFSPS---LSRLATS-S-  616 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i--~~l----~~h~~~V~sv~fspd---g~~Latg-s-  616 (835)
                      +..+...-..-+.|+|.|||++|++--..|.|++++..+++..  ..+    .........|+|+|+   +.+|++. + 
T Consensus        24 ~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~  103 (347)
T 3das_A           24 LRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTS  103 (347)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEEC
T ss_pred             eEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEec
Confidence            3344444556889999999997777655899999987655532  222    123456889999995   3444433 2 


Q ss_pred             -CCCeEEEEecCCCC----------ceeEEee-cCCCCeEEEEEcCCCCcEEEEEe------------CCCcEEEEECCC
Q 003271          617 -ADRTVRVWDTENPD----------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD------------NNSEIRYWSINN  672 (835)
Q Consensus       617 -~Dg~I~IWDl~t~~----------~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs------------~Dg~I~iwDl~s  672 (835)
                       .++.|.-|.+....          ..+..+. ........|.|.|+|..++.+|+            ..|.|.-++...
T Consensus       104 ~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG  183 (347)
T 3das_A          104 ASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDG  183 (347)
T ss_dssp             SSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTS
T ss_pred             CCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCC
Confidence             35566667665421          1111121 11123457999999864443332            235666666542


Q ss_pred             Ce-------eeeEeec---CceEEEEecCCCEEEEEEc--CCcEEEEECCCCe------------------EEEEEcCCC
Q 003271          673 GS-------CAGVFKS---GATQMRFQPRLGRILAAAI--ENYISILDVETQV------------------CRLKLQGHK  722 (835)
Q Consensus       673 ~~-------~~~~~~~---~i~~l~fsp~~~~ll~~s~--dg~I~IwDl~t~~------------------~i~~l~~h~  722 (835)
                      .-       ....+..   ....++|+|++. |+++..  ++.-.|.-+..+.                  ++..+..+.
T Consensus       184 ~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~  262 (347)
T 3das_A          184 EPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDE  262 (347)
T ss_dssp             SBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTT
T ss_pred             CccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCC
Confidence            20       0112222   256789999754 444443  2222222222111                  122222222


Q ss_pred             CCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-cceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          723 NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-GECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-~~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      .....++|. +|..++..- .+.|....+..... .+....+......+..++..|||..+++..
T Consensus       263 ~ap~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          263 ASPSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             CCEEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             CCCcceEEE-cCceeeccccCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            345667775 455555444 55666666654321 112223334456788999999986544443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=97.32  E-value=0.026  Score=59.90  Aligned_cols=225  Identities=7%  Similarity=-0.010  Sum_probs=114.6

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEEC-----C------CeEEEEecCCCCceeEEe
Q 003271          569 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA-----D------RTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~-----D------g~I~IWDl~t~~~~~~~~  636 (835)
                      +++.|+  ..+.+||..+.+-.. .+..........+...++.+++.|+.     .      ..+.+||..+...  ..+
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~   82 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW--LGM   82 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEE--EEC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeE--EEC
Confidence            344555  579999998876442 22212222333334457788888873     1      1277888877553  222


Q ss_pred             ecCCCCe--EEEEEcCCCCcEEEEEeCC--------CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc-C-
Q 003271          637 TGHSTTV--MSLDFHPSKEDLLCSCDNN--------SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI-E-  701 (835)
Q Consensus       637 ~~h~~~V--~sl~fsp~g~~ll~sgs~D--------g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~-d-  701 (835)
                      ..-..+-  .+++..  ++.+++.|+.+        ..+.+||+.+.+-...-.  .+ ....+...++..++.|+. + 
T Consensus        83 ~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~  160 (315)
T 4asc_A           83 PPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSD  160 (315)
T ss_dssp             CCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTT
T ss_pred             CCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCC
Confidence            1111111  122222  34566666632        468999998876433221  11 112222234455566665 2 


Q ss_pred             ----CcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-CC-----eEEEEEcCCCCCcceEEEeecCCCceE
Q 003271          702 ----NYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-DE-----LVRVWSIGSGSKGECIHELSCTGNKFH  770 (835)
Q Consensus       702 ----g~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg-----~I~IwDl~t~~~~~~i~~l~~~~~~V~  770 (835)
                          ..+.+||..+.+-...-.. ....-.+++.. ++++++.|+ ++     .+.+||+.+.. ...+..+........
T Consensus       161 ~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~  238 (315)
T 4asc_A          161 RKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNK-WAPFEAFPQERSSLS  238 (315)
T ss_dssp             SCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTE-EEEECCCSSCCBSCE
T ss_pred             CcccceEEEEeCCCCeEEECCCCCCchhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCe-EEECCCCCCccccee
Confidence                4699999987643322111 11111222222 566666665 33     68889987751 111111111111122


Q ss_pred             EEEEeCCCCEEEEEEcC--------------CeEEEEEcCCCcEEEe
Q 003271          771 SCVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL  803 (835)
Q Consensus       771 sv~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~l  803 (835)
                      .+.+  ++..+++|+.+              ..|.+||+.+.+...+
T Consensus       239 ~~~~--~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  283 (315)
T 4asc_A          239 LVSL--VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV  283 (315)
T ss_dssp             EEEE--TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred             EEEE--CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence            2222  55666666653              2588999988876644

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=97.29  E-value=0.0089  Score=63.43  Aligned_cols=228  Identities=7%  Similarity=0.022  Sum_probs=115.4

Q ss_pred             CCCCEEEEEeCC----CeEEEEEcCCCeEEEE--eccCCCCeEEEEECCCCCEEEEEEC----C-----CeEEEEecCCC
Q 003271          565 PDGKLLATGGHD----KKAVLWCTESFTVKST--LEEHTQWITDVRFSPSLSRLATSSA----D-----RTVRVWDTENP  629 (835)
Q Consensus       565 pdg~~Lasgs~D----g~I~VWd~~t~~~i~~--l~~h~~~V~sv~fspdg~~Latgs~----D-----g~I~IWDl~t~  629 (835)
                      -++.+++.|+.+    ..+.+||..+.+-...  +......-..+.+  ++.+++.|+.    +     ..+.+||+.+.
T Consensus        23 ~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~  100 (308)
T 1zgk_A           23 VGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTN  100 (308)
T ss_dssp             CCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTT
T ss_pred             CCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEEE--CCEEEEECCCcCCCCCCeecceEEEECCCCC
Confidence            356677777632    4688999887654322  1111111122222  5667777665    2     35888998876


Q ss_pred             CceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEee--cC--ceEEEEecCCCEEEEEE
Q 003271          630 DYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFK--SG--ATQMRFQPRLGRILAAA  699 (835)
Q Consensus       630 ~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~--~~--i~~l~fsp~~~~ll~~s  699 (835)
                      ..... .+.........+.+  + ..+++.|+.+     ..+.+||+.+.+....-.  ..  ...++. .++..++.|+
T Consensus       101 ~W~~~~~~p~~r~~~~~~~~--~-~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG  176 (308)
T 1zgk_A          101 QWSPCAPMSVPRNRIGVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAV-LNRLLYAVGG  176 (308)
T ss_dssp             EEEECCCCSSCCBTCEEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred             eEeECCCCCcCccccEEEEE--C-CEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEE-ECCEEEEEeC
Confidence            53111 11111111222222  3 3466666533     468899998876443221  11  112222 2445555555


Q ss_pred             cC-----CcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCC
Q 003271          700 IE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTG  766 (835)
Q Consensus       700 ~d-----g~I~IwDl~t~~~i~~--l~~h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~  766 (835)
                      .+     ..+.+||+.+.+-...  +........++.+  ++++++.|+ +     ..+.+||+.+..- ..+..+....
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W-~~~~~~p~~r  253 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETW-TFVAPMKHRR  253 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEE-EECCCCSSCC
T ss_pred             CCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcE-EECCCCCCCc
Confidence            43     4689999987654322  1111111222222  566666665 3     4699999887521 1111111111


Q ss_pred             CceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEe
Q 003271          767 NKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTL  803 (835)
Q Consensus       767 ~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l  803 (835)
                      ... +++.. ++..+++|+.+     ..|.+||+.+.+...+
T Consensus       254 ~~~-~~~~~-~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~  293 (308)
T 1zgk_A          254 SAL-GITVH-QGRIYVLGGYDGHTFLDSVECYDPDTDTWSEV  293 (308)
T ss_dssp             BSC-EEEEE-TTEEEEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             cce-EEEEE-CCEEEEEcCcCCCcccceEEEEcCCCCEEeec
Confidence            112 22222 55666666644     3788999988876543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.27  E-value=0.0071  Score=63.74  Aligned_cols=214  Identities=12%  Similarity=0.098  Sum_probs=105.5

Q ss_pred             CCCEEEEEE-CC-----CeEEEEecCCCCceeEE-eecCCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCe-
Q 003271          608 SLSRLATSS-AD-----RTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGS-  674 (835)
Q Consensus       608 dg~~Latgs-~D-----g~I~IWDl~t~~~~~~~-~~~h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~-  674 (835)
                      ++.+++.|+ .+     ..+.+||+.+....... +.........+.+  + +.+++.|+.+     ..+.+||+.+.+ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~-~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL--H-DRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--T-TEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE--C-CEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            344555555 22     36888888875531111 1111111222222  2 4577777654     469999998766 


Q ss_pred             --eeeE--eecC-ceEEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          675 --CAGV--FKSG-ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       675 --~~~~--~~~~-i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                        ....  +... ....+...++..+++|+.+     ..+.+||+.+.+-..  .+...... .+++. -++++++.|+ 
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~-~~~~~-~~~~iyv~GG~  168 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTLGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREG-AGLVV-ASGVIYCLGGY  168 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBS-CEEEE-ETTEEEEECCB
T ss_pred             CeeEECCCCCCCccceeEEEECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCccc-ceEEE-ECCEEEEECCC
Confidence              3322  1111 1111222244555555543     468999998765333  22211111 22222 2566666665 


Q ss_pred             C-----CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCCC-Ce
Q 003271          742 D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDK-LV  810 (835)
Q Consensus       742 D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~-~V  810 (835)
                      +     ..+.+||+.+..- ..+..+.........+.+  ++..+++|+.+     ..|.+||+.+.+...+..... ..
T Consensus       169 ~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~  245 (301)
T 2vpj_A          169 DGLNILNSVEKYDPHTGHW-TNVTPMATKRSGAGVALL--NDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRC  245 (301)
T ss_dssp             CSSCBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCB
T ss_pred             CCCcccceEEEEeCCCCcE-EeCCCCCcccccceEEEE--CCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCccc
Confidence            3     3689999887521 111111111111122222  55666666654     479999999888765432211 11


Q ss_pred             eEEEEeCCCCEEEEEECCC
Q 003271          811 SSLAASTVNGMVASASHDK  829 (835)
Q Consensus       811 ~~la~spdg~~LaSgs~DG  829 (835)
                      ...+..-++++++.|+.++
T Consensus       246 ~~~~~~~~~~i~v~GG~~~  264 (301)
T 2vpj_A          246 YVGATVLRGRLYAIAGYDG  264 (301)
T ss_dssp             SCEEEEETTEEEEECCBCS
T ss_pred             ceeEEEECCEEEEEcCcCC
Confidence            1112223677778887653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.27  E-value=3.2e-05  Score=93.23  Aligned_cols=14  Identities=21%  Similarity=0.207  Sum_probs=2.4

Q ss_pred             ccCCCCeeEEEEeC
Q 003271          804 SAHDKLVSSLAAST  817 (835)
Q Consensus       804 ~~h~~~V~~la~sp  817 (835)
                      ..|-..+..+.|.+
T Consensus       706 SDH~pV~a~f~l~~  719 (727)
T 4b8c_D          706 SDHIPLLARFEFMK  719 (727)
T ss_dssp             SSBCC---------
T ss_pred             CCceeEEEEEEEec
Confidence            34555555555544

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=97.22  E-value=0.043  Score=62.43  Aligned_cols=255  Identities=11%  Similarity=0.069  Sum_probs=146.3

Q ss_pred             EEEEeCCCeEEEEEcCCCeEEEEeccC-------------------------CCCeE--EEEEC---CCCCEEEEEEC-C
Q 003271          570 LATGGHDKKAVLWCTESFTVKSTLEEH-------------------------TQWIT--DVRFS---PSLSRLATSSA-D  618 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t~~~i~~l~~h-------------------------~~~V~--sv~fs---pdg~~Latgs~-D  618 (835)
                      |.+|+..|.|+|+-+.+++.+..+.-.                         .+...  .+.+.   .||++|+.-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            678899999999999999988877310                         11111  22222   25778887764 5


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEc--CCCCcEEEEEe------CCCcEE------------EEECCCCeeeeE
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFH--PSKEDLLCSCD------NNSEIR------------YWSINNGSCAGV  678 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs--p~g~~ll~sgs------~Dg~I~------------iwDl~s~~~~~~  678 (835)
                      ..|...+++.-++...........+.++.|-  |+..++++.+-      .||...            ..|..+.+....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD~~tm~v~~Q  232 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAIDAETMEMAFQ  232 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEETTTCSEEEE
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEcCCccEEEEE
Confidence            6777788877554222233345678888886  56665554441      233211            112222222111


Q ss_pred             e--ecCceEEEEecCCCEEEEEEcCC---------------cEEEEECC-------------------------C----C
Q 003271          679 F--KSGATQMRFQPRLGRILAAAIEN---------------YISILDVE-------------------------T----Q  712 (835)
Q Consensus       679 ~--~~~i~~l~fsp~~~~ll~~s~dg---------------~I~IwDl~-------------------------t----~  712 (835)
                      +  .+....+...+++++.++.+.+.               .+.++++.                         .    +
T Consensus       233 v~v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~ViD~~~~~~~~  312 (638)
T 3sbq_A          233 VIVDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTPVLDGRKKDGKD  312 (638)
T ss_dssp             EEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSCBTTBC
T ss_pred             EEcCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCeeEEccccccccC
Confidence            1  12233445566777777766532               25555442                         2    1


Q ss_pred             eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC---------CCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271          713 VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG---------SKGECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       713 ~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~---------~~~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                      ..+..+..-....+.+.++|||+++++++  +.+|.|+|++..         ....++..-...+-...-.+|.++|. .
T Consensus       313 ~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~-a  391 (638)
T 3sbq_A          313 SKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGN-A  391 (638)
T ss_dssp             CSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSE-E
T ss_pred             CceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCc-e
Confidence            11111111223445688999999999988  889999999842         11122333233466678889999994 4


Q ss_pred             EEEE-cCCeEEEEEcCCC----------cEE-EeccCCCCeeEEEE------eCCCCEEEEEE
Q 003271          782 LVIG-CYETLELWNMTEN----------KTL-TLSAHDKLVSSLAA------STVNGMVASAS  826 (835)
Q Consensus       782 ~sgs-~dg~I~IwDl~~~----------~~~-~l~~h~~~V~~la~------spdg~~LaSgs  826 (835)
                      ++.- -|..|..|++...          .++ ++.-|-. +-.+.-      .+||++|++.+
T Consensus       392 YTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~ln  453 (638)
T 3sbq_A          392 YTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALS  453 (638)
T ss_dssp             EEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEE
T ss_pred             EeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEec
Confidence            4444 6889999998653          233 4444432 223322      57888888876

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.19  E-value=0.018  Score=60.84  Aligned_cols=210  Identities=10%  Similarity=0.050  Sum_probs=106.0

Q ss_pred             CEEEEEEC--CCeEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeCC----CcEEEEECCCCeeeeEee--
Q 003271          610 SRLATSSA--DRTVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDNN----SEIRYWSINNGSCAGVFK--  680 (835)
Q Consensus       610 ~~Latgs~--Dg~I~IWDl~t~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~D----g~I~iwDl~s~~~~~~~~--  680 (835)
                      .+++.|+.  ...+.+||..+.+.... .+.........+.+   ++.+++.|+.+    ..+.+||+.+.+....-.  
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            34555654  35688999887653211 11111111222222   24577777654    678999998876543322  


Q ss_pred             cC-ceEEEEecCCCEEEEEEcC------CcEEEEECCCCeEEEEEcCC-CCCeEEEEEcCCCCEEEEEe-C---------
Q 003271          681 SG-ATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGH-KNQVHSVCWNTSGEYLASVS-D---------  742 (835)
Q Consensus       681 ~~-i~~l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h-~~~I~sl~fspdg~~Lasgs-D---------  742 (835)
                      .. ....+...++..+++|+.+      ..+.+||..+.+-...-... ...-.+++. -++++++.|+ +         
T Consensus        90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~  168 (306)
T 3ii7_A           90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNNVSGRVL  168 (306)
T ss_dssp             SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCTTTCEEC
T ss_pred             ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCCCccccc
Confidence            11 1112222245556666654      46899999887543321111 111112222 2556666554 2         


Q ss_pred             CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCC---CCeeEEE
Q 003271          743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHD---KLVSSLA  814 (835)
Q Consensus       743 g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~---~~V~~la  814 (835)
                      ..+.+||+.+..- ..+..+...... .+++.. ++..+++|+.+     ..|.+||+.+.+...+....   ....++.
T Consensus       169 ~~~~~yd~~~~~W-~~~~~~p~~r~~-~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~  245 (306)
T 3ii7_A          169 NSCEVYDPATETW-TELCPMIEARKN-HGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA  245 (306)
T ss_dssp             CCEEEEETTTTEE-EEECCCSSCCBS-CEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE
T ss_pred             ceEEEeCCCCCeE-EECCCccchhhc-ceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE
Confidence            3488999887521 111111111111 222222 55566666543     37899999988776543221   1122222


Q ss_pred             EeCCCCEEEEEECC
Q 003271          815 ASTVNGMVASASHD  828 (835)
Q Consensus       815 ~spdg~~LaSgs~D  828 (835)
                      +  ++++++.|+.+
T Consensus       246 ~--~~~i~v~GG~~  257 (306)
T 3ii7_A          246 V--GSIVYVLAGFQ  257 (306)
T ss_dssp             E--TTEEEEEECBC
T ss_pred             E--CCEEEEEeCcC
Confidence            2  67788888855

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.15  E-value=0.02  Score=60.32  Aligned_cols=217  Identities=11%  Similarity=0.064  Sum_probs=107.6

Q ss_pred             CEEEEEECC----CeEEEEecCCCCceeEEeecCCCC--eEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeE
Q 003271          610 SRLATSSAD----RTVRVWDTENPDYSLRTFTGHSTT--VMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGV  678 (835)
Q Consensus       610 ~~Latgs~D----g~I~IWDl~t~~~~~~~~~~h~~~--V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~  678 (835)
                      .+++.|+.+    ..+.+||+.+...  ..+.....+  -.+++..  ++.+++.|+.+     ..+.+||+.+.+....
T Consensus        17 ~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~   92 (302)
T 2xn4_A           17 LMVVVGGQAPKAIRSVECYDFKEERW--HQVAELPSRRCRAGMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV   92 (302)
T ss_dssp             EEEEECCBSSSBCCCEEEEETTTTEE--EEECCCSSCCBSCEEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred             EEEEECCCCCCCCCcEEEEcCcCCcE--eEcccCCcccccceEEEE--CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence            344455432    3578888876543  222111111  1122222  34577777654     3688999988765433


Q ss_pred             ee--cC-ceEEEEecCCCEEEEEEcCC-----cEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C------
Q 003271          679 FK--SG-ATQMRFQPRLGRILAAAIEN-----YISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D------  742 (835)
Q Consensus       679 ~~--~~-i~~l~fsp~~~~ll~~s~dg-----~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D------  742 (835)
                      -.  .. ....+...++..+++|+.++     .+.+||+.+.+-...-.. ....-.+++. -++++++.|+ +      
T Consensus        93 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~  171 (302)
T 2xn4_A           93 ANMRDRRSTLGAAVLNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGGYDVASRQC  171 (302)
T ss_dssp             CCCSSCCBSCEEEEETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEETTTTEE
T ss_pred             CCCCccccceEEEEECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeCCCCCCCcc
Confidence            22  11 11112223456666676553     588899887654332111 1111122222 2556666554 2      


Q ss_pred             -CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCCCC--eeEEE
Q 003271          743 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLA  814 (835)
Q Consensus       743 -g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~~--V~~la  814 (835)
                       ..+.+||+.+..- ..+..+.........+.+  ++..+++|+.+     ..+.+||+.+.+...+......  -.+++
T Consensus       172 ~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~  248 (302)
T 2xn4_A          172 LSTVECYNATTNEW-TYIAEMSTRRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC  248 (302)
T ss_dssp             CCCEEEEETTTTEE-EEECCCSSCCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE
T ss_pred             ccEEEEEeCCCCcE-EECCCCccccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE
Confidence             2588999877521 111111111111222222  55666666654     3799999998887654432211  11222


Q ss_pred             EeCCCCEEEEEECCC-----cEEEeC
Q 003271          815 ASTVNGMVASASHDK-----CVKIWK  835 (835)
Q Consensus       815 ~spdg~~LaSgs~DG-----~V~IWd  835 (835)
                      . -++++++.|+.++     .|.+||
T Consensus       249 ~-~~~~i~v~GG~~~~~~~~~v~~yd  273 (302)
T 2xn4_A          249 A-VNGLLYVVGGDDGSCNLASVEYYN  273 (302)
T ss_dssp             E-ETTEEEEECCBCSSSBCCCEEEEE
T ss_pred             E-ECCEEEEECCcCCCcccccEEEEc
Confidence            2 3677888887654     355554

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.06  E-value=0.12  Score=55.06  Aligned_cols=214  Identities=4%  Similarity=-0.083  Sum_probs=125.7

Q ss_pred             CCCCEEEEEe--CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC--------------CeEEEEecCC
Q 003271          565 PDGKLLATGG--HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------RTVRVWDTEN  628 (835)
Q Consensus       565 pdg~~Lasgs--~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D--------------g~I~IWDl~t  628 (835)
                      .++.+|+...  .++.|+..+.+.... ..+...  .  +--|++++.+|+-+...              ..|+..+++.
T Consensus        23 ~~g~~iy~~n~~d~~~ly~~~~dg~~~-~~l~~~--~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg   97 (302)
T 3s25_A           23 ESDGEVFFSNTNDNGRLYAMNIDGSNI-HKLSND--T--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNG   97 (302)
T ss_dssp             EETTEEEEEEGGGTTEEEEEETTSCSC-EEEEEE--E--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTS
T ss_pred             EeCCEEEEEeCCCCceEEEEcCCCCCC-EEccCC--c--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCC
Confidence            4566666654  256666666654332 233211  1  23456788888777543              3677777776


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEE---eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc-CCcE
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC---DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI-ENYI  704 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sg---s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~-dg~I  704 (835)
                      ...  ..+...  .  +..|+++++.++++-   ..+..|+..++............+  ..++++++.|+..+. ...|
T Consensus        98 ~~~--~~l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~--~~~~~~g~~iy~t~~g~~~I  169 (302)
T 3s25_A           98 HGS--TVLDPD--P--CIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL--FTCNTSDRYFYYNNPKNGQL  169 (302)
T ss_dssp             CCC--EEEECS--C--EEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC--CCSEEETTEEEEECTTTCCE
T ss_pred             Ccc--eEeecC--C--ccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc--eEeeEECCEEEEEeCCCceE
Confidence            542  223221  1  235677778777665   345567777776544333333333  456888888887766 5789


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C-CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D-ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D-g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                      ++.++..+.....+.+   ... ..+.|++.+|+-..  + ..|..-++.....    ..+.  ...+  ..|+|++..|
T Consensus       170 y~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~----~~Lt--~~~~--~~~~~~g~~I  237 (302)
T 3s25_A          170 YRYDTASQSEALFYDC---NCY-KPVVLDDTNVYYMDVNRDNAIVHVNINNPNP----VVLT--EANI--EHYNVYGSLI  237 (302)
T ss_dssp             EEEETTTTEEEEEECS---CEE-EEEEEETTEEEEEEGGGTTEEEEECSSSCCC----EECS--CSCE--EEEEEETTEE
T ss_pred             EEEECCCCCEEEEeCC---Ccc-ceeeecCCEEEEEEcCCCcEEEEEECCCCCe----EEEe--CCCc--ceEEECCCEE
Confidence            9999887765544432   222 34568999888776  3 2566666665421    1222  1223  3478889888


Q ss_pred             EEEEc--CCeEEEEEcCCCcEEEe
Q 003271          782 LVIGC--YETLELWNMTENKTLTL  803 (835)
Q Consensus       782 ~sgs~--dg~I~IwDl~~~~~~~l  803 (835)
                      +.++.  .+.|..-+++......+
T Consensus       238 y~~~~~~~~~i~~~~~DG~~r~~l  261 (302)
T 3s25_A          238 FYQRGGDNPALCVVKNDGTGFKEL  261 (302)
T ss_dssp             EEEECSSSCEEEEEETTSCCCEEE
T ss_pred             EEEECCCCcEEEEEECCCCccEEe
Confidence            87643  35788888876554433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=97.05  E-value=0.068  Score=56.69  Aligned_cols=225  Identities=8%  Similarity=0.012  Sum_probs=110.9

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEE-EeccCCCCeEEEEECCCCCEEEEEEC----CC-------eEEEEecCCCCceeEEe
Q 003271          569 LLATGGHDKKAVLWCTESFTVKS-TLEEHTQWITDVRFSPSLSRLATSSA----DR-------TVRVWDTENPDYSLRTF  636 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~-~l~~h~~~V~sv~fspdg~~Latgs~----Dg-------~I~IWDl~t~~~~~~~~  636 (835)
                      +++.|+.  .+.+||..+.+-.. .+..............++.+++.|+.    ++       .+.+||..+...  ..+
T Consensus        18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W--~~~   93 (318)
T 2woz_A           18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW--VGL   93 (318)
T ss_dssp             EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEE--EEC
T ss_pred             hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcE--EEC
Confidence            3444443  48899988876543 22211122223334456778888873    12       277888876543  222


Q ss_pred             ecCC--CCeEEEEEcCCCCcEEEEEeCC-------CcEEEEECCCCeeeeEee--cC-ceEEEEecCCCEEEEEEc----
Q 003271          637 TGHS--TTVMSLDFHPSKEDLLCSCDNN-------SEIRYWSINNGSCAGVFK--SG-ATQMRFQPRLGRILAAAI----  700 (835)
Q Consensus       637 ~~h~--~~V~sl~fsp~g~~ll~sgs~D-------g~I~iwDl~s~~~~~~~~--~~-i~~l~fsp~~~~ll~~s~----  700 (835)
                      ....  ..-.+++.. + +.+++.|+.+       ..+.+||+.+.+-...-.  .. ....+...++..++.|+.    
T Consensus        94 ~~~p~~r~~~~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~  171 (318)
T 2woz_A           94 PPLPSARCLFGLGEV-D-DKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDK  171 (318)
T ss_dssp             SCBSSCBCSCEEEEE-T-TEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSS
T ss_pred             CCCCccccccceEEE-C-CEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCC
Confidence            1111  111122222 3 4566666643       358889998876543322  11 111122234455555553    


Q ss_pred             --CCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271          701 --ENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSCTGNKFHS  771 (835)
Q Consensus       701 --dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~s  771 (835)
                        -..+.+||+.+.+-...-.. ....-.+++.. ++++++.|+ +     ..+.+||+.+..- ..+..+....... +
T Consensus       172 ~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~-~  248 (318)
T 2woz_A          172 KCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW-EVMTEFPQERSSI-S  248 (318)
T ss_dssp             CBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE-EECCCCSSCCBSC-E
T ss_pred             CccceEEEEcCCCCEEEECCCCCCCcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE-EECCCCCCcccce-E
Confidence              24699999988754332111 11111222322 556666665 2     2578899877521 1121111111111 2


Q ss_pred             EEEeCCCCEEEEEEcC--------------CeEEEEEcCCCcEEEe
Q 003271          772 CVFHPTFPSLLVIGCY--------------ETLELWNMTENKTLTL  803 (835)
Q Consensus       772 v~fspdg~~L~sgs~d--------------g~I~IwDl~~~~~~~l  803 (835)
                      ++. -++..+++|+.+              ..|.+||+.+.+...+
T Consensus       249 ~~~-~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          249 LVS-LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             EEE-ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred             EEE-ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence            222 245566666543              3688999988876644

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=97.05  E-value=0.094  Score=55.81  Aligned_cols=177  Identities=7%  Similarity=-0.003  Sum_probs=108.8

Q ss_pred             EEEEeCCCCEEEEEeCC--------------CeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE--CC--CeE
Q 003271          560 SCHFSPDGKLLATGGHD--------------KKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS--AD--RTV  621 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~D--------------g~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs--~D--g~I  621 (835)
                      +--|+++|.+|+.+...              ..|+..+++..+...... .  .  +..|++++.+|+-..  .+  ..|
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~-~--~--~~~~s~~g~~Iy~~~~~~~~~~~I  131 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDP-D--P--CIYASLIGNYIYYLHYDTQTATSL  131 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEEC-S--C--EEEEEEETTEEEEEEESSSSCEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeec-C--C--ccEEEEeCCEEEEEeecCCCCceE
Confidence            34567888888777543              467777777665333221 1  1  235677888888776  33  455


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcC
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIE  701 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~d  701 (835)
                      ...+++...  ...+..+..    ..|+++++.++.+......|++.++..+.....+.+.. ...+.|++++|+....+
T Consensus       132 y~~~~dGs~--~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~~~-~~~~~P~g~~iy~t~~~  204 (302)
T 3s25_A          132 YRIRIDGEE--KKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDCNC-YKPVVLDDTNVYYMDVN  204 (302)
T ss_dssp             EEEETTSCC--CEEEESSCC----CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECSCE-EEEEEEETTEEEEEEGG
T ss_pred             EEEECCCCC--eEEEeCCCc----eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCCCc-cceeeecCCEEEEEEcC
Confidence            555565433  344444432    34567788787776657789999988776555554433 34567999999887765


Q ss_pred             C--cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCC
Q 003271          702 N--YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSG  753 (835)
Q Consensus       702 g--~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~  753 (835)
                      +  .|..-++..... ..+.  ...+  ..|+|++..|+.+.   .+.|..-++...
T Consensus       205 ~~~~I~~~~ldG~~~-~~Lt--~~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          205 RDNAIVHVNINNPNP-VVLT--EANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             GTTEEEEECSSSCCC-EECS--CSCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCcEEEEEECCCCCe-EEEe--CCCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            3  677777765543 2332  2233  34778888888765   346666666543

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=96.99  E-value=0.00019  Score=86.50  Aligned_cols=9  Identities=11%  Similarity=0.261  Sum_probs=3.4

Q ss_pred             CCeEEEEEc
Q 003271          576 DKKAVLWCT  584 (835)
Q Consensus       576 Dg~I~VWd~  584 (835)
                      +|...+|..
T Consensus       487 ~G~AI~y~~  495 (727)
T 4b8c_D          487 DGCCIFFKR  495 (727)
T ss_dssp             CCCEEEC--
T ss_pred             ccEEEEEEc
Confidence            444445443

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.90  E-value=0.071  Score=56.46  Aligned_cols=209  Identities=11%  Similarity=0.009  Sum_probs=103.9

Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC-----C------CcEEEEECCCCeeeeEe
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN-----N------SEIRYWSINNGSCAGVF  679 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~-----D------g~I~iwDl~s~~~~~~~  679 (835)
                      +++.|+  ..+.+||..+.+.....+..............++ .+++.|+.     .      ..+.+||+.+.+....-
T Consensus         7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~-~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~   83 (315)
T 4asc_A            7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKEN-QVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMP   83 (315)
T ss_dssp             EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTC-CEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECC
T ss_pred             EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECC-EEEEEcCcccCCCCCccccccceEEecCCCCeEEECC
Confidence            344454  5699999998765332222111222222333344 46666663     1      13788999887653321


Q ss_pred             e--cC--ceEEEEecCCCEEEEEEcC--------CcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe--C--
Q 003271          680 K--SG--ATQMRFQPRLGRILAAAIE--------NYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS--D--  742 (835)
Q Consensus       680 ~--~~--i~~l~fsp~~~~ll~~s~d--------g~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs--D--  742 (835)
                      .  .+  ...++. -++..++.|+.+        ..+.+||..+.+-...-.. ....-.+++. -++++++.|+  +  
T Consensus        84 ~~p~~r~~~~~~~-~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           84 PLPSPRCLFGLGE-ALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CBSSCEESCEEEE-ETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTS
T ss_pred             CCCcchhceeEEE-ECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCC
Confidence            1  11  111222 244555555532        4689999988653321111 1111122222 3455666555  2  


Q ss_pred             ---CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEEeccCCC--CeeE
Q 003271          743 ---ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHDK--LVSS  812 (835)
Q Consensus       743 ---g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~~h~~--~V~~  812 (835)
                         ..+.+||+.+..- ..+..+.........+.+  ++..+++|+.++     .+.+||+.+.+...+.....  .-.+
T Consensus       162 ~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~  238 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEW-KELAPMQTARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLS  238 (315)
T ss_dssp             CBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCE
T ss_pred             cccceEEEEeCCCCeE-EECCCCCCchhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCccccee
Confidence               3789999887521 111111111111122222  566677777654     68999999987765542211  1112


Q ss_pred             EEEeCCCCEEEEEECC
Q 003271          813 LAASTVNGMVASASHD  828 (835)
Q Consensus       813 la~spdg~~LaSgs~D  828 (835)
                      ++. -++++++.|+.+
T Consensus       239 ~~~-~~~~l~v~GG~~  253 (315)
T 4asc_A          239 LVS-LVGTLYAIGGFA  253 (315)
T ss_dssp             EEE-ETTEEEEEEEEE
T ss_pred             EEE-ECCEEEEECCcc
Confidence            222 356777877764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.89  E-value=0.037  Score=61.23  Aligned_cols=133  Identities=18%  Similarity=0.188  Sum_probs=90.0

Q ss_pred             cCCcEEEEECCCCeEEEEEcCC----CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCC-c--------ceEEEeec--
Q 003271          700 IENYISILDVETQVCRLKLQGH----KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSK-G--------ECIHELSC--  764 (835)
Q Consensus       700 ~dg~I~IwDl~t~~~i~~l~~h----~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~-~--------~~i~~l~~--  764 (835)
                      .++.|+.-++......+.+...    -..|..+..+|+|++||..++..|.|..+..+.. .        ...+.+..  
T Consensus        39 ~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~  118 (452)
T 3pbp_A           39 QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE  118 (452)
T ss_dssp             ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG
T ss_pred             ECCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCC
Confidence            3467777776643323333221    2367889999999999999999999999984321 0        11223322  


Q ss_pred             ----CCCceEEEEEeCCC---CEEEEEEcCCeEEEEEcCCCc--EE---------EeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          765 ----TGNKFHSCVFHPTF---PSLLVIGCYETLELWNMTENK--TL---------TLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       765 ----~~~~V~sv~fspdg---~~L~sgs~dg~I~IwDl~~~~--~~---------~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                          ....|..+.|||-+   ..|++-..|+.|++||+....  +.         ........|.+++|..++-.|...+
T Consensus       119 ~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~  198 (452)
T 3pbp_A          119 EEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLN  198 (452)
T ss_dssp             CC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEE
T ss_pred             cccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEe
Confidence                24679999999964   689999999999999997622  11         1222336789999999776666544


Q ss_pred             --CCCcEE
Q 003271          827 --HDKCVK  832 (835)
Q Consensus       827 --~DG~V~  832 (835)
                        .+|.|+
T Consensus       199 ~t~~GDIY  206 (452)
T 3pbp_A          199 TTEGGDIF  206 (452)
T ss_dssp             CTTSCEEE
T ss_pred             cCCCCCEE
Confidence              777775

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.86  E-value=0.023  Score=61.42  Aligned_cols=229  Identities=9%  Similarity=-0.061  Sum_probs=111.5

Q ss_pred             CCCEEEEEeC-CCeEEEEEcCC--C--eEEEEec-cCCCCeEEEEECCCCCEEEEEEC-C---------CeEEEEecCCC
Q 003271          566 DGKLLATGGH-DKKAVLWCTES--F--TVKSTLE-EHTQWITDVRFSPSLSRLATSSA-D---------RTVRVWDTENP  629 (835)
Q Consensus       566 dg~~Lasgs~-Dg~I~VWd~~t--~--~~i~~l~-~h~~~V~sv~fspdg~~Latgs~-D---------g~I~IWDl~t~  629 (835)
                      ++++++.|+. ...+.+||..+  .  ..+..+. .....-.++.+  ++.+++.|+. +         ..+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            5666677664 35688999863  2  2222222 11112222333  5667777765 2         46889998876


Q ss_pred             CceeEEeec-CCCCeEEEEEcCCCCcEEEEEeCC---------------------------------------CcEEEEE
Q 003271          630 DYSLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNN---------------------------------------SEIRYWS  669 (835)
Q Consensus       630 ~~~~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~D---------------------------------------g~I~iwD  669 (835)
                      ......... ....-.+++. .+ ..+++.|+.+                                       ..+.+||
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~-~~-~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd  174 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFV-HN-GKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFD  174 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEE-ET-TEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEE
T ss_pred             cEEECCCCCCcccccceEEE-EC-CEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEe
Confidence            532111111 1111112222 23 4577777654                                       5799999


Q ss_pred             CCCCeeeeEeecC----c-eEEEEecCCCEEEEEEc------CCcEEEEEC--CCCeEEE--EEcCCCCCeEEEEEcCCC
Q 003271          670 INNGSCAGVFKSG----A-TQMRFQPRLGRILAAAI------ENYISILDV--ETQVCRL--KLQGHKNQVHSVCWNTSG  734 (835)
Q Consensus       670 l~s~~~~~~~~~~----i-~~l~fsp~~~~ll~~s~------dg~I~IwDl--~t~~~i~--~l~~h~~~I~sl~fspdg  734 (835)
                      +.+.+....-..+    . ..++. .++..+++|+.      ...+.+||+  .+.+-..  .+........+.+...++
T Consensus       175 ~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~  253 (357)
T 2uvk_A          175 PSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISND  253 (357)
T ss_dssp             TTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECC
Confidence            9887654432211    1 22222 24445555543      346778887  4333221  111111111111222355


Q ss_pred             CEEEEEe-C----------------------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---
Q 003271          735 EYLASVS-D----------------------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---  788 (835)
Q Consensus       735 ~~Lasgs-D----------------------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---  788 (835)
                      ++++.|+ +                      ..+.+||+.+.. ...+..+........+  +.-++..+++|+.++   
T Consensus       254 ~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~-W~~~~~~p~~r~~~~~--~~~~~~i~v~GG~~~~~~  330 (357)
T 2uvk_A          254 SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGK-WDKSGELSQGRAYGVS--LPWNNSLLIIGGETAGGK  330 (357)
T ss_dssp             EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC----CEEEEECSSCCBSSEE--EEETTEEEEEEEECGGGC
T ss_pred             EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCc-eeeCCCCCCCccccee--EEeCCEEEEEeeeCCCCC
Confidence            6666655 2                      257899988753 2333333322222222  234667778888653   


Q ss_pred             ---eEEEEEcCCCcEEE
Q 003271          789 ---TLELWNMTENKTLT  802 (835)
Q Consensus       789 ---~I~IwDl~~~~~~~  802 (835)
                         .|.++++++++.+.
T Consensus       331 ~~~~v~~l~~~~~~~~~  347 (357)
T 2uvk_A          331 AVTDSVLITVKDNKVTV  347 (357)
T ss_dssp             EEEEEEEEEC-CCSCEE
T ss_pred             EeeeEEEEEEcCcEeEe
Confidence               57778999888774

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.82  E-value=0.36  Score=54.36  Aligned_cols=102  Identities=12%  Similarity=0.113  Sum_probs=60.8

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce-eEEeec------CCCCeEEEEEcCC---CCcEEEEEeC------
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTG------HSTTVMSLDFHPS---KEDLLCSCDN------  661 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~-~~~~~~------h~~~V~sl~fsp~---g~~ll~sgs~------  661 (835)
                      ...+.|+|.|+|+++++-...+.|++++..++... +..+..      ....+..|+|+|+   +..++++-+.      
T Consensus        27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~  106 (454)
T 1cru_A           27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST  106 (454)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred             CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence            45679999999987776544457888876544421 111211      2345779999996   5556655542      


Q ss_pred             ------CCcEEEEECCCC--e-----eee-Eee----cCceEEEEecCCCEEEEEE
Q 003271          662 ------NSEIRYWSINNG--S-----CAG-VFK----SGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       662 ------Dg~I~iwDl~s~--~-----~~~-~~~----~~i~~l~fsp~~~~ll~~s  699 (835)
                            ...|..|+....  .     .+. .+.    .....++|.|++..+++.+
T Consensus       107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~G  162 (454)
T 1cru_A          107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG  162 (454)
T ss_dssp             -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred             ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEEC
Confidence                  235666665432  1     111 122    2257799999987666644

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=96.79  E-value=0.11  Score=55.01  Aligned_cols=201  Identities=11%  Similarity=0.048  Sum_probs=99.1

Q ss_pred             eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC----CC-------cEEEEECCCCeeeeEe--ecC--ce
Q 003271          620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NS-------EIRYWSINNGSCAGVF--KSG--AT  684 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~----Dg-------~I~iwDl~s~~~~~~~--~~~--i~  684 (835)
                      .+.+||..+.+....................+ +.+++.|+.    ++       .+.+||..+.+....-  ...  ..
T Consensus        25 ~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~-~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~  103 (318)
T 2woz_A           25 AAVAYDPMENECYLTALAEQIPRNHSSIVTQQ-NQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLF  103 (318)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCSSEEEEECSS-SCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSC
T ss_pred             ceEEECCCCCceecccCCccCCccceEEEEEC-CEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCcccccc
Confidence            48899998776533222211112222223334 446666662    11       2788998877654321  111  11


Q ss_pred             EEEEecCCCEEEEEEcC-------CcEEEEECCCCeEEEEEcCCCCCe--EEEEEcCCCCEEEEEe--C-----CeEEEE
Q 003271          685 QMRFQPRLGRILAAAIE-------NYISILDVETQVCRLKLQGHKNQV--HSVCWNTSGEYLASVS--D-----ELVRVW  748 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~d-------g~I~IwDl~t~~~i~~l~~h~~~I--~sl~fspdg~~Lasgs--D-----g~I~Iw  748 (835)
                      .++. .++..+++|+.+       ..+.+||..+.+-...-. ...+.  .+++. .++++++.|+  +     ..+.+|
T Consensus       104 ~~~~-~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~-~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~y  180 (318)
T 2woz_A          104 GLGE-VDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN-LPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIY  180 (318)
T ss_dssp             EEEE-ETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC-CSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEE
T ss_pred             ceEE-ECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC-CCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEE
Confidence            2222 245566666654       358889998765433211 11111  12222 3566666654  2     258999


Q ss_pred             EcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCCCC--eeEEEEeCCCCE
Q 003271          749 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL--VSSLAASTVNGM  821 (835)
Q Consensus       749 Dl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~~--V~~la~spdg~~  821 (835)
                      |+.+.. ...+..+...... .+++.. ++..+++|+.+     ..+.+||+.+.+...+......  -.+++ .-++++
T Consensus       181 d~~~~~-W~~~~~~p~~r~~-~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i  256 (318)
T 2woz_A          181 NPKKGD-WKDLAPMKTPRSM-FGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISLV-SLAGSL  256 (318)
T ss_dssp             ETTTTE-EEEECCCSSCCBS-CEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEEE-EETTEE
T ss_pred             cCCCCE-EEECCCCCCCccc-ceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEEE-EECCEE
Confidence            988752 1111111111111 222222 55666666643     3688999998887654322111  11222 235677


Q ss_pred             EEEEECC
Q 003271          822 VASASHD  828 (835)
Q Consensus       822 LaSgs~D  828 (835)
                      ++.|+.+
T Consensus       257 ~v~GG~~  263 (318)
T 2woz_A          257 YAIGGFA  263 (318)
T ss_dssp             EEECCBC
T ss_pred             EEECCee
Confidence            7777754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.70  E-value=0.13  Score=55.65  Aligned_cols=190  Identities=6%  Similarity=-0.023  Sum_probs=104.0

Q ss_pred             CEEEEEECCCeEEEEecCCCCceeEEeecC-CCCeEEEEEc--CCCCcEEEEE-eCCCcEEEEECCCCeeeeEeecC---
Q 003271          610 SRLATSSADRTVRVWDTENPDYSLRTFTGH-STTVMSLDFH--PSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKSG---  682 (835)
Q Consensus       610 ~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-~~~V~sl~fs--p~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~~~---  682 (835)
                      .++++++.||.|.-+|..+++. +..+... ..++....-.  +.+..+++.. ..||.|+.++..+|.....+..+   
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~-~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHI-IWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEE-EEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcE-EEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            4788899999999999998875 3333322 1222221100  1122344443 57999999999988655444321   


Q ss_pred             -ceEEEEe-----------cCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCC--CC-----eEEEEEc-----CCCCEEE
Q 003271          683 -ATQMRFQ-----------PRLGRILAAAIENYISILDVETQVCRLKLQGHK--NQ-----VHSVCWN-----TSGEYLA  738 (835)
Q Consensus       683 -i~~l~fs-----------p~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--~~-----I~sl~fs-----pdg~~La  738 (835)
                       ...+...           ..++.+++++.++.++..|+++|+.+..+....  ..     ..|....     ..+..|+
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~  169 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIV  169 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEE
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEE
Confidence             1112211           156889999999999999999999999886421  10     1111111     1234565


Q ss_pred             EEe-CCeEEEEEcCCCCCcc-eEEEeecCCCc--e-EEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE
Q 003271          739 SVS-DELVRVWSIGSGSKGE-CIHELSCTGNK--F-HSCVFHPTFPSLLVIGCYETLELWNMTENKTLT  802 (835)
Q Consensus       739 sgs-Dg~I~IwDl~t~~~~~-~i~~l~~~~~~--V-~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~  802 (835)
                      .+. +..|.+.+ +++.... .+.........  + ..-.++.++.+ ++++.||.|..+|..+++.+-
T Consensus       170 ig~~~y~v~~~~-~sG~~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          170 IGKTIFELGIHS-YDGASYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEECEECC-TTSCCCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EecceEEEEEEC-CCCCeEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            555 66777766 3442111 01111110000  0 00000123554 557888888888888777653

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.50  E-value=0.046  Score=57.81  Aligned_cols=211  Identities=7%  Similarity=-0.005  Sum_probs=104.9

Q ss_pred             CCCEEEEEECC----CeEEEEecCCCCceeEEeecCCC--CeEEEEEcCCCCcEEEEEeC----C-----CcEEEEECCC
Q 003271          608 SLSRLATSSAD----RTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSCDN----N-----SEIRYWSINN  672 (835)
Q Consensus       608 dg~~Latgs~D----g~I~IWDl~t~~~~~~~~~~h~~--~V~sl~fsp~g~~ll~sgs~----D-----g~I~iwDl~s  672 (835)
                      ++.+++.|+.+    ..+.+||..+...  ..+.....  .-.+++.. + +.+++.|+.    +     ..+.+||+.+
T Consensus        24 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W--~~~~~~p~~r~~~~~~~~-~-~~lyv~GG~~~~~~~~~~~~~~~~~d~~~   99 (308)
T 1zgk_A           24 GRLIYTAGGYFRQSLSYLEAYNPSNGTW--LRLADLQVPRSGLAGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMT   99 (308)
T ss_dssp             CCCEEEECCBSSSBCCCEEEEETTTTEE--EECCCCSSCCBSCEEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTT
T ss_pred             CCEEEEEeCcCCCCcceEEEEcCCCCeE--eECCCCCcccccceEEEE-C-CEEEEECCCcCCCCCCeecceEEEECCCC
Confidence            45566666532    3578888876553  22211111  11122222 2 456666664    2     4688999988


Q ss_pred             CeeeeEee--cC--ceEEEEecCCCEEEEEEcC-----CcEEEEECCCCeEEEE--EcCCCCCeEEEEEcCCCCEEEEEe
Q 003271          673 GSCAGVFK--SG--ATQMRFQPRLGRILAAAIE-----NYISILDVETQVCRLK--LQGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       673 ~~~~~~~~--~~--i~~l~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~--l~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      .+....-.  ..  ...++. .++..+++|+.+     ..+.+||..+.+-...  +........++.+  ++.+++.|+
T Consensus       100 ~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG  176 (308)
T 1zgk_A          100 NQWSPCAPMSVPRNRIGVGV-IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGG  176 (308)
T ss_dssp             TEEEECCCCSSCCBTCEEEE-ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECC
T ss_pred             CeEeECCCCCcCccccEEEE-ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeC
Confidence            76443221  11  112222 244555555533     4688999987654332  1111111122222  566666665


Q ss_pred             -C-----CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC-----CeEEEEEcCCCcEEEeccCCCC-
Q 003271          742 -D-----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY-----ETLELWNMTENKTLTLSAHDKL-  809 (835)
Q Consensus       742 -D-----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d-----g~I~IwDl~~~~~~~l~~h~~~-  809 (835)
                       +     ..+.+||+.+..- ..+..+.........+.+  ++..+++|+.+     ..|.+||+.+.+...+...... 
T Consensus       177 ~~~~~~~~~~~~yd~~~~~W-~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r  253 (308)
T 1zgk_A          177 FDGTNRLNSAECYYPERNEW-RMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRR  253 (308)
T ss_dssp             BCSSCBCCCEEEEETTTTEE-EECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCC
T ss_pred             CCCCCcCceEEEEeCCCCeE-eeCCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCc
Confidence             3     3689999877521 111111111111222233  56666666654     4799999999887654322111 


Q ss_pred             -eeEEEEeCCCCEEEEEECCC
Q 003271          810 -VSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       810 -V~~la~spdg~~LaSgs~DG  829 (835)
                       -.+++. -++++++.|+.++
T Consensus       254 ~~~~~~~-~~~~i~v~GG~~~  273 (308)
T 1zgk_A          254 SALGITV-HQGRIYVLGGYDG  273 (308)
T ss_dssp             BSCEEEE-ETTEEEEECCBCS
T ss_pred             cceEEEE-ECCEEEEEcCcCC
Confidence             112222 2577788887553

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=96.40  E-value=0.99  Score=50.73  Aligned_cols=106  Identities=17%  Similarity=0.159  Sum_probs=62.9

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEE--EEecc------CCCCeEEEEECCC---CCEEEEEEC------
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVK--STLEE------HTQWITDVRFSPS---LSRLATSSA------  617 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i--~~l~~------h~~~V~sv~fspd---g~~Latgs~------  617 (835)
                      -...++|+|.|||+++++-...+.|++++..+++..  ..+..      ....+..|+|+|+   +..|+++..      
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            345789999999997776544457998886555432  33321      2456779999995   555554432      


Q ss_pred             -------CCeEEEEecCCCC-------ceeEEee-cCCCCeEEEEEcCCCCcEEEEEe
Q 003271          618 -------DRTVRVWDTENPD-------YSLRTFT-GHSTTVMSLDFHPSKEDLLCSCD  660 (835)
Q Consensus       618 -------Dg~I~IWDl~t~~-------~~~~~~~-~h~~~V~sl~fsp~g~~ll~sgs  660 (835)
                             ...|.-|++....       ..+..+. ........|+|.|+|..++.+|+
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   2356666654321       1111121 11234789999999875554443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.40  E-value=0.2  Score=53.81  Aligned_cols=183  Identities=10%  Similarity=-0.014  Sum_probs=90.1

Q ss_pred             CCCEEEEEeC-C---------CeEEEEEcCCCeEEEEeccC-C--CCeEEEEECCCCCEEEEEECC--------------
Q 003271          566 DGKLLATGGH-D---------KKAVLWCTESFTVKSTLEEH-T--QWITDVRFSPSLSRLATSSAD--------------  618 (835)
Q Consensus       566 dg~~Lasgs~-D---------g~I~VWd~~t~~~i~~l~~h-~--~~V~sv~fspdg~~Latgs~D--------------  618 (835)
                      ++++++.|+. +         ..+.+||..+.+-...-... .  ....++.  .++++++.|+.+              
T Consensus        65 ~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~  142 (357)
T 2uvk_A           65 DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEA  142 (357)
T ss_dssp             TTEEEEECCEEECTTSCEEECCCEEEEETTTTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCCCccceeeccEEEEeCCCCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhc
Confidence            5667777765 2         46889998876543222111 1  1122222  467788888765              


Q ss_pred             -------------------------CeEEEEecCCCCceeEEeecCCCCe-EEEEEcCCCCcEEEEEeC------CCcEE
Q 003271          619 -------------------------RTVRVWDTENPDYSLRTFTGHSTTV-MSLDFHPSKEDLLCSCDN------NSEIR  666 (835)
Q Consensus       619 -------------------------g~I~IWDl~t~~~~~~~~~~h~~~V-~sl~fsp~g~~ll~sgs~------Dg~I~  666 (835)
                                               ..+.+||+.+.......-....... .+++..  ++.+++.|+.      ...+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~~--~~~iyv~GG~~~~~~~~~~v~  220 (357)
T 2uvk_A          143 GKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAGESPWYGTAGAAVVNK--GDKTWLINGEAKPGLRTDAVF  220 (357)
T ss_dssp             TTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEEECSSCCCBSCEEEEE--TTEEEEECCEEETTEECCCEE
T ss_pred             CCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECCCCCCCCcccccEEEE--CCEEEEEeeecCCCcccCceE
Confidence                                     4789999987654222111111111 233333  2446666653      34677


Q ss_pred             EEEC--CCCeeeeE--eecC---ceEEEEecCCCEEEEEEcC----------------------CcEEEEECCCC--eEE
Q 003271          667 YWSI--NNGSCAGV--FKSG---ATQMRFQPRLGRILAAAIE----------------------NYISILDVETQ--VCR  715 (835)
Q Consensus       667 iwDl--~s~~~~~~--~~~~---i~~l~fsp~~~~ll~~s~d----------------------g~I~IwDl~t~--~~i  715 (835)
                      +||+  .+.+....  +..+   ....+...++..+++|+.+                      ..+.+||+.+.  +.+
T Consensus       221 ~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~  300 (357)
T 2uvk_A          221 ELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS  300 (357)
T ss_dssp             EEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE
T ss_pred             EEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC
Confidence            8887  44443322  1111   1222333445556666532                      25788998865  333


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEe-CC------eEEEEEcCCCC
Q 003271          716 LKLQGHKNQVHSVCWNTSGEYLASVS-DE------LVRVWSIGSGS  754 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg------~I~IwDl~t~~  754 (835)
                      ..+........++.  -++++++.|+ ++      .|.++++++++
T Consensus       301 ~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~  344 (357)
T 2uvk_A          301 GELSQGRAYGVSLP--WNNSLLIIGGETAGGKAVTDSVLITVKDNK  344 (357)
T ss_dssp             EECSSCCBSSEEEE--ETTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred             CCCCCCcccceeEE--eCCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence            33332222222222  3566666666 32      46666887763

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=96.37  E-value=0.0031  Score=71.18  Aligned_cols=13  Identities=15%  Similarity=0.378  Sum_probs=6.3

Q ss_pred             hhhHHHHHHHhhh
Q 003271           53 FEWWSVFWDIFIA   65 (835)
Q Consensus        53 ~eww~~Fwdif~a   65 (835)
                      -+.|.++.+.+..
T Consensus       337 ~~~~~~~~~~~~~  349 (449)
T 3iot_A          337 SAFWYAVRTAVIN  349 (449)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            3455555554443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.096  Score=56.63  Aligned_cols=184  Identities=8%  Similarity=0.039  Sum_probs=102.4

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccC-CCCeEEEEEC--C-CCCEEEEE-ECCCeEEEEecCCCCceeEEeec---C
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEH-TQWITDVRFS--P-SLSRLATS-SADRTVRVWDTENPDYSLRTFTG---H  639 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-~~~V~sv~fs--p-dg~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~---h  639 (835)
                      .++++++.||.|.-+|.++|+.+.+++.. ..++....-.  + ++..++.. +.||.|..++..++......-..   .
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            37888999999999999999999888654 1222221100  1 22333333 57999999998876432111110   1


Q ss_pred             CCCeEE---EEE-cC---CCCcEEEEEeCCCcEEEEECCCCeeeeEeecCce----------EEEEe-----cCCCEEEE
Q 003271          640 STTVMS---LDF-HP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGAT----------QMRFQ-----PRLGRILA  697 (835)
Q Consensus       640 ~~~V~s---l~f-sp---~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~----------~l~fs-----p~~~~ll~  697 (835)
                      ..++..   ..+ .+   .....+++|+.+|.+...|+.+|+.+..+.....          |.+..     ..++.++.
T Consensus        91 ~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~i  170 (339)
T 2be1_A           91 TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVI  170 (339)
T ss_dssp             TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEE
T ss_pred             ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEE
Confidence            122221   000 00   0134677899999999999999999988874421          11111     12467777


Q ss_pred             EEcCCcEEEEECCCCeEEEEEc-----CCCCC--e-EEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271          698 AAIENYISILDVETQVCRLKLQ-----GHKNQ--V-HSVCWNTSGEYLASVSDELVRVWSIGSG  753 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~-----~h~~~--I-~sl~fspdg~~LasgsDg~I~IwDl~t~  753 (835)
                      +..+..+.+.+ ++++ +..+.     .....  + .+-..+.|+.++++..||.|..+|..++
T Consensus       171 g~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~~~~~~dg~v~A~d~~~G  232 (339)
T 2be1_A          171 GKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMCIAPFRDKSLLASDLDFR  232 (339)
T ss_dssp             EEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCCEEEETTTEEEEECSTTC
T ss_pred             ecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcEEEECCCCEEEEEECCCC
Confidence            77777777776 4443 22111     10000  0 0000112466666555888888888776

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=96.12  E-value=2.1  Score=46.66  Aligned_cols=254  Identities=6%  Similarity=-0.045  Sum_probs=119.0

Q ss_pred             CCCEEEEEEeC--CCCEEEEEeCCC----eEEEEEcCCCeEEEEecc--------------CCCCeEEEEECC-C-CCEE
Q 003271          555 TSKVESCHFSP--DGKLLATGGHDK----KAVLWCTESFTVKSTLEE--------------HTQWITDVRFSP-S-LSRL  612 (835)
Q Consensus       555 ~~~V~sl~fSp--dg~~Lasgs~Dg----~I~VWd~~t~~~i~~l~~--------------h~~~V~sv~fsp-d-g~~L  612 (835)
                      ...|.+|+++|  ++.++| ++..|    .|...+ +.++....+..              +...|.+|++.| + ...|
T Consensus        54 ~~~v~~i~~dp~~~~~l~~-g~~~g~~g~gl~~s~-D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l  131 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLM-AARTGHLGPTVFRSD-DGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTW  131 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEE-EEEC--CCEEEEEES-STTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCE
T ss_pred             CCceEEEEECCCCCCeEEE-EecCCCCCccEEEeC-CCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEE
Confidence            35699999998  454444 44444    444332 22322222211              112578899987 2 4556


Q ss_pred             EEEECCCeEEEEecCCCCceeEEeec-------------------CCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCC
Q 003271          613 ATSSADRTVRVWDTENPDYSLRTFTG-------------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINN  672 (835)
Q Consensus       613 atgs~Dg~I~IWDl~t~~~~~~~~~~-------------------h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s  672 (835)
                      +++...+.|...+  .+......+..                   ....|.+|.++|.. ..+++ +..++.|...+- .
T Consensus       132 ~~g~~~ggl~~S~--DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~v-g~~~ggl~~s~D-g  207 (394)
T 3b7f_A          132 YAGTSPQGLFRST--DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYI-GMSSGGVFESTD-A  207 (394)
T ss_dssp             EEEEETTEEEEES--STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEE-EEETBEEEEESS-T
T ss_pred             EEEecCCcEEEEc--CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEE-EECCCCEEEECC-C
Confidence            6665566554443  22221222211                   12357899998843 33444 333444443322 1


Q ss_pred             CeeeeEee----------------cCceEEEEecCC-CEEEEEEcCCcEEEEECCCCeEEEEEcC--CC---CCeEEEEE
Q 003271          673 GSCAGVFK----------------SGATQMRFQPRL-GRILAAAIENYISILDVETQVCRLKLQG--HK---NQVHSVCW  730 (835)
Q Consensus       673 ~~~~~~~~----------------~~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~t~~~i~~l~~--h~---~~I~sl~f  730 (835)
                      ++.-..+.                ..+..+.+++.. +.++++.. +.|+..+-. ++.-..+..  ..   ..+.++.+
T Consensus       208 G~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~-~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~  285 (394)
T 3b7f_A          208 GTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNH-CGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVV  285 (394)
T ss_dssp             TSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEET-TEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEE
T ss_pred             CCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcC-CeEEEeCCC-CCcceECCCCCCCCCccceEEEEE
Confidence            22111111                136778888863 66766654 445555432 222222221  11   34567888


Q ss_pred             cCC--CCEEEEEe-----------CCeEEEEEcCCC-CCcceEEE-eecCCC----ceEEEEEeCCC-CEEEEEEcCCeE
Q 003271          731 NTS--GEYLASVS-----------DELVRVWSIGSG-SKGECIHE-LSCTGN----KFHSCVFHPTF-PSLLVIGCYETL  790 (835)
Q Consensus       731 spd--g~~Lasgs-----------Dg~I~IwDl~t~-~~~~~i~~-l~~~~~----~V~sv~fspdg-~~L~sgs~dg~I  790 (835)
                      +|.  +.++++..           ++...||....+ .....+.. +.....    ....++++|.. ..|++++.++.|
T Consensus       286 ~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l  365 (394)
T 3b7f_A          286 HQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLPTDQAWLTVKRQAMTADAHAPVGVYFGTTGGEI  365 (394)
T ss_dssp             CSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSCCSSCCCCCCTBSEEECCSSSCCEEEECTTSCE
T ss_pred             CCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCCCccccceEEEEEEEECCCCCCEEEEEeCCCeE
Confidence            753  44444431           233456655443 22122211 111000    11357787753 457777666665


Q ss_pred             EEEEcCCCcEEEeccCCCCeeEEEEe
Q 003271          791 ELWNMTENKTLTLSAHDKLVSSLAAS  816 (835)
Q Consensus       791 ~IwDl~~~~~~~l~~h~~~V~~la~s  816 (835)
                      ++-+-.......+..+-..|.+|+|.
T Consensus       366 ~~S~D~G~tW~~~~~~lp~~~~v~~~  391 (394)
T 3b7f_A          366 WASADEGEHWQCIASHLPHIYAVQSA  391 (394)
T ss_dssp             EEESSTTSBCEEEECSCSCEEEEEEE
T ss_pred             EEECCCCCCceEcccCCCCeeEEEEe
Confidence            54332222233444444567777764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.10  E-value=0.23  Score=62.54  Aligned_cols=216  Identities=10%  Similarity=0.181  Sum_probs=129.1

Q ss_pred             CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271          576 DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       576 Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l  655 (835)
                      ...|.|.|+.++..+.+-.   -..-+.-.+|..+.||.-. ..++.|+|+++... +..+.- ..+|.-=.|-.... +
T Consensus        47 ~~~vvIidl~~~~~~~rrp---i~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~k-lks~~~-~e~VvfWkWis~~~-l  119 (1630)
T 1xi4_A           47 QAQVVIIDMNDPSNPIRRP---ISADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHTM-TDDVTFWKWISLNT-V  119 (1630)
T ss_pred             CceEEEEECCCCCCccccc---ccchhhccCCCcceEEEec-CCeEEEeehHHhhh-hccccc-CCCceEEEecCCCe-e
Confidence            3478888988765442211   1112344677777766654 67899999998654 333332 34566666765533 3


Q ss_pred             EEEEeCCCcEEEEECCCC-eeeeEee-------cCceEEEEecCCCEEEEEEc-------CCcEEEEECCCCeEEEEEcC
Q 003271          656 LCSCDNNSEIRYWSINNG-SCAGVFK-------SGATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG  720 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~-~~~~~~~-------~~i~~l~fsp~~~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~  720 (835)
                      .+++  +..|+.|++... .+++.|.       ..+...+.+++.++++..+-       .|.+.+|.++.+. ...+.|
T Consensus       120 ~lVT--~~aVyHW~~~~~s~P~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~ieg  196 (1630)
T 1xi4_A          120 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  196 (1630)
T ss_pred             EEEc--CCeEEEeccCCCCccHHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhH
Confidence            3233  568999999642 2333332       23566677888888776553       4778888887542 233455


Q ss_pred             CCCCeEEEEEc--C-CCCEEEEEe----CCeEEEEEcCCC---CC--c-ceEEEee---cCCCceEEEEEeCCCCEEEEE
Q 003271          721 HKNQVHSVCWN--T-SGEYLASVS----DELVRVWSIGSG---SK--G-ECIHELS---CTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       721 h~~~I~sl~fs--p-dg~~Lasgs----Dg~I~IwDl~t~---~~--~-~~i~~l~---~~~~~V~sv~fspdg~~L~sg  784 (835)
                      |......+...  + ...+++.+.    .+.+.|.++...   ..  . +.+..+.   ....-..++..++....++..
T Consensus       197 ha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~i  276 (1630)
T 1xi4_A          197 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  276 (1630)
T ss_pred             hHhhhheeccCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEE
Confidence            55444333332  1 122333333    268999998653   10  0 1111111   123345677888888899999


Q ss_pred             EcCCeEEEEEcCCCcEE
Q 003271          785 GCYETLELWNMTENKTL  801 (835)
Q Consensus       785 s~dg~I~IwDl~~~~~~  801 (835)
                      +..|.|++||+.++.++
T Consensus       277 tk~G~~~~~d~~t~~~i  293 (1630)
T 1xi4_A          277 TKYGYIHLYDLETGTCI  293 (1630)
T ss_pred             ecCceEEEEecccchhh
Confidence            99999999999999876

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=95.90  E-value=2.6  Score=45.90  Aligned_cols=257  Identities=8%  Similarity=-0.024  Sum_probs=120.7

Q ss_pred             CEEEEEeCCCeEEEEEcCC----CeEEEEeccCCCCeEEEEECC-CCCEEEEEECCC----eEEEEecCCCCceeEEeec
Q 003271          568 KLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSP-SLSRLATSSADR----TVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t----~~~i~~l~~h~~~V~sv~fsp-dg~~Latgs~Dg----~I~IWDl~t~~~~~~~~~~  638 (835)
                      ..|++|+..| +.+++...    .+..... .....|.+|++.| +...|+++...|    .|...  ..+......+..
T Consensus        23 g~l~vgt~~G-l~~~~~~~~g~~W~~~~~~-~~~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s--~D~G~tW~~~~~   98 (394)
T 3b7f_A           23 VMLLVATIKG-AWFLASDPARRTWELRGPV-FLGHTIHHIVQDPREPERMLMAARTGHLGPTVFRS--DDGGGNWTEATR   98 (394)
T ss_dssp             CEEEEEETTE-EEEEEECTTSCSEEEEEEE-STTSEEEEEEECSSSTTCEEEEEEC--CCEEEEEE--SSTTSCCEECSB
T ss_pred             CEEEEEecCc-eEEEECCCCCCCceECCcc-CCCCceEEEEECCCCCCeEEEEecCCCCCccEEEe--CCCCCCceECCc
Confidence            3667777766 55555432    2222211 2245699999998 333444444444    34333  222211222111


Q ss_pred             --------------CCCCeEEEEEcCCC-CcEEEEEeCCCcEEEEECCCCeeeeEee----------------------c
Q 003271          639 --------------HSTTVMSLDFHPSK-EDLLCSCDNNSEIRYWSINNGSCAGVFK----------------------S  681 (835)
Q Consensus       639 --------------h~~~V~sl~fsp~g-~~ll~sgs~Dg~I~iwDl~s~~~~~~~~----------------------~  681 (835)
                                    ....|.+|++.|.+ ...++.+...+.|...+-. ++.-..+.                      .
T Consensus        99 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~~ggl~~S~Dg-G~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~  177 (394)
T 3b7f_A           99 PPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTSPQGLFRSTDH-GASWEPVAGFNDHPMRRAWTGGEQDGTPDGP  177 (394)
T ss_dssp             CCCCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEETTEEEEESST-TSBCEECHHHHTCTTHHHHHCCC----CCCC
T ss_pred             cccCCCcccccccccccceeEEEeCCCCCCCEEEEEecCCcEEEEcCC-CCCeEECcCccCCccccccccccccCCCCCC
Confidence                          11247789998732 2234444445555544322 22111111                      1


Q ss_pred             CceEEEEecC-CCEEEEEEcCCcEEEEECCC--CeEEEE-EcC-C--------CCCeEEEEEcCC-CCEEEEEeCCeEEE
Q 003271          682 GATQMRFQPR-LGRILAAAIENYISILDVET--QVCRLK-LQG-H--------KNQVHSVCWNTS-GEYLASVSDELVRV  747 (835)
Q Consensus       682 ~i~~l~fsp~-~~~ll~~s~dg~I~IwDl~t--~~~i~~-l~~-h--------~~~I~sl~fspd-g~~LasgsDg~I~I  747 (835)
                      .+..+.++|. .+.++++..++.|...+-..  .+.+.. ... +        ...+.+|.+++. ...|+++.++.|..
T Consensus       178 ~i~~i~~d~~~~~~l~vg~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~  257 (394)
T 3b7f_A          178 KMHSILVDPRDPKHLYIGMSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYR  257 (394)
T ss_dssp             EEEEEEECTTCTTCEEEEEETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEE
T ss_pred             ceeEEEECCCCCCEEEEEECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEE
Confidence            2567888874 45667776665555543221  121110 000 0        124889999886 35666666555555


Q ss_pred             EEcCCCCCcceEEEeec--CC---CceEEEEEeCC-CCEEEEEEc-----------CCeEEEEEcCC-CcEE-Eec-cCC
Q 003271          748 WSIGSGSKGECIHELSC--TG---NKFHSCVFHPT-FPSLLVIGC-----------YETLELWNMTE-NKTL-TLS-AHD  807 (835)
Q Consensus       748 wDl~t~~~~~~i~~l~~--~~---~~V~sv~fspd-g~~L~sgs~-----------dg~I~IwDl~~-~~~~-~l~-~h~  807 (835)
                      .+-. +   .....+..  ..   ..+..++++|. ...|+++..           ++...||...+ ++.. .+. +-.
T Consensus       258 s~D~-G---~tW~~~~~~l~~~~~~~~~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~~glp  333 (394)
T 3b7f_A          258 MDRR-E---GVWKRIGDAMPREVGDIGFPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQDRGLP  333 (394)
T ss_dssp             EETT-T---TEEECGGGGSCTTTCSCEEEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEECBTSC
T ss_pred             eCCC-C---CcceECCCCCCCCCccceEEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECCCCCC
Confidence            5422 2   22222211  11   33567788763 344555542           23345565444 3322 221 111


Q ss_pred             --C-----CeeEEEEeCCC-CEEEEEECCCcEEE
Q 003271          808 --K-----LVSSLAASTVN-GMVASASHDKCVKI  833 (835)
Q Consensus       808 --~-----~V~~la~spdg-~~LaSgs~DG~V~I  833 (835)
                        .     ....++++|.. ..|+.++.++.|.+
T Consensus       334 ~~~~~~~~~~~~~~~~p~~~~~l~~g~~~g~l~~  367 (394)
T 3b7f_A          334 TDQAWLTVKRQAMTADAHAPVGVYFGTTGGEIWA  367 (394)
T ss_dssp             CSSCCCCCCTBSEEECCSSSCCEEEECTTSCEEE
T ss_pred             CccccceEEEEEEEECCCCCCEEEEEeCCCeEEE
Confidence              0     12357887743 44666666665543

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.86  E-value=0.82  Score=46.09  Aligned_cols=171  Identities=13%  Similarity=0.027  Sum_probs=95.9

Q ss_pred             CcEEEEEeCCCcEEEEECCCCe------eeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE------EE
Q 003271          653 EDLLCSCDNNSEIRYWSINNGS------CAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVC------RL  716 (835)
Q Consensus       653 ~~ll~sgs~Dg~I~iwDl~s~~------~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~------i~  716 (835)
                      +.+|++...| +|+.=....+.      ....+.    ..+..++|+|++. |+++ .+|.++-.+..+...      -.
T Consensus         4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV-~~G~Ly~~~~~t~~~~~W~~s~t   80 (236)
T 1tl2_A            4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV-LNDKIYKGTPPTHDNDNWMGRAK   80 (236)
T ss_dssp             CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE-ETTEEEEESCCCSTTCCHHHHCE
T ss_pred             ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE-eCCeEEEECCCCCCccccccccc
Confidence            3456666666 66655554433      111222    2478999999766 4444 778888877755111      11


Q ss_pred             EEc-CCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcce----EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271          717 KLQ-GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE  791 (835)
Q Consensus       717 ~l~-~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~----i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~  791 (835)
                      .+- .--....++.|.++|.+.++ +||.|+-++-.+.....-    ...-.+.-..+..+.|.|+|... ++. ++.++
T Consensus        81 ~IG~~Gw~~F~a~~fD~~G~LYav-~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Ly-av~-dg~ly  157 (236)
T 1tl2_A           81 KIGNGGWNQFQFLFFDPNGYLYAV-SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLY-AVH-GQQFY  157 (236)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEE-EEE-TTEEE
T ss_pred             EecccccccceEEEECCCCCEEEe-CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEE-EEe-CCcEE
Confidence            110 00111468899999998888 889888887544321111    11111122567999999999844 444 77765


Q ss_pred             EEEcCCCcE-------EEec-cCCCCeeEEEEeCCCCEEEEEECCCcE
Q 003271          792 LWNMTENKT-------LTLS-AHDKLVSSLAASTVNGMVASASHDKCV  831 (835)
Q Consensus       792 IwDl~~~~~-------~~l~-~h~~~V~~la~spdg~~LaSgs~DG~V  831 (835)
                      -........       ..+. ..-..-..+.|.+++.+++..  +|.+
T Consensus       158 r~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~  203 (236)
T 1tl2_A          158 KALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKF  203 (236)
T ss_dssp             EECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEE
T ss_pred             ecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeE
Confidence            443332210       1111 223344557788888766655  6654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.80  E-value=0.19  Score=63.27  Aligned_cols=233  Identities=12%  Similarity=0.165  Sum_probs=138.6

Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC-
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH-  639 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-  639 (835)
                      .-.+|..+.||.=. ..++.|||+++...++.+.-. ..|.-=.|-.+. .|+..+ +..|+-|++.....+.+.+..| 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~-e~VvfWkWis~~-~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISLN-TVALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccC-CCceEEEecCCC-eeEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            34566666666554 679999999988877776543 456555665443 344333 4579999998655555555555 


Q ss_pred             ---CCCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEeecCceE---EEE--ecCCCEEEEEEc----C
Q 003271          640 ---STTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSGATQ---MRF--QPRLGRILAAAI----E  701 (835)
Q Consensus       640 ---~~~V~sl~fsp~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~i~~---l~f--sp~~~~ll~~s~----d  701 (835)
                         ...|..-..+++.+.++++|-      -.|.+.+|.++.+.. ..+.++..+   +.+  .+....+++-..    .
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~s-Q~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g  225 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVS-QPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAG  225 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccc-hhhhHhHhhhheeccCCCCCCceEEEEEEecCCC
Confidence               456777788888888887764      347888888875432 112222111   111  111122333222    2


Q ss_pred             CcEEEEECCCC---eE------EEEEcC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCc
Q 003271          702 NYISILDVETQ---VC------RLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNK  768 (835)
Q Consensus       702 g~I~IwDl~t~---~~------i~~l~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~  768 (835)
                      +.++|.++...   ..      +..+..   ...-..++..++.-.+++..+ -|.|.+||+.++   .++..-......
T Consensus       226 ~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~---~~i~~~ris~~~  302 (1630)
T 1xi4_A          226 GKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGET  302 (1630)
T ss_pred             ceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccc---hhhhhccccCCc
Confidence            78888888543   11      111111   122234566677666666666 899999999998   566555555555


Q ss_pred             eEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          769 FHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       769 V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      |...+.+....-+++....|.|.-..+++..++
T Consensus       303 iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv  335 (1630)
T 1xi4_A          303 IFVTAPHEATAGIIGVNRKGQVLSVCVEEENII  335 (1630)
T ss_pred             eEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence            555555544444666667776666666655544

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.78  E-value=0.3  Score=58.19  Aligned_cols=219  Identities=5%  Similarity=0.018  Sum_probs=109.6

Q ss_pred             CCCEEEEEECC----CeEEEEecCCCCceeEEee------cCCCCeEEEEEcC-CCCcEEEEEeCC------CcEEEEEC
Q 003271          608 SLSRLATSSAD----RTVRVWDTENPDYSLRTFT------GHSTTVMSLDFHP-SKEDLLCSCDNN------SEIRYWSI  670 (835)
Q Consensus       608 dg~~Latgs~D----g~I~IWDl~t~~~~~~~~~------~h~~~V~sl~fsp-~g~~ll~sgs~D------g~I~iwDl  670 (835)
                      ++.+++.|+.+    ..+.+||..+.........      .....-.+++..+ + ..+++.|+.+      ..+.+||+
T Consensus       397 ~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~-~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          397 GNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRN-NQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             SSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTT-TEEEEECCBSSTTCBCCCCEEEET
T ss_pred             CCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccC-CEEEEEcCCCCCCCccccEEEEeC
Confidence            34444444432    3477788776654222201      0111112333333 4 3466666643      35889999


Q ss_pred             CCCeeeeEe--ecC--ceEEEEecCCCEEEEEEcCC--cEEEEECCCCeEEEEEc-----CCCCCeEEEEEcCC-CCEEE
Q 003271          671 NNGSCAGVF--KSG--ATQMRFQPRLGRILAAAIEN--YISILDVETQVCRLKLQ-----GHKNQVHSVCWNTS-GEYLA  738 (835)
Q Consensus       671 ~s~~~~~~~--~~~--i~~l~fsp~~~~ll~~s~dg--~I~IwDl~t~~~i~~l~-----~h~~~I~sl~fspd-g~~La  738 (835)
                      .+.+....-  ..+  ..+.+...++..++.|+.++  .+.+||..+..-...-.     .......++.+..+ +++++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            886544332  111  22233324677777777654  79999998875433211     11122233555555 56666


Q ss_pred             EEe---C-----CeEEEEEcCCCCC-----cceEEEeecCCCceEEEEEeCCCCEEEEEEcC--------CeEEEEEcCC
Q 003271          739 SVS---D-----ELVRVWSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCY--------ETLELWNMTE  797 (835)
Q Consensus       739 sgs---D-----g~I~IwDl~t~~~-----~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d--------g~I~IwDl~~  797 (835)
                      .|+   +     +.+.+||+.+..-     ...+.........-.+++...++..+++|+.+        ..|.+||+.+
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t  635 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLS  635 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEETTT
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEECCC
Confidence            665   2     3689999988741     11222211111122233334436666777642        4699999998


Q ss_pred             CcEEEeccCCC--------Ce-eEEEEeCCCCEEEEEEC
Q 003271          798 NKTLTLSAHDK--------LV-SSLAASTVNGMVASASH  827 (835)
Q Consensus       798 ~~~~~l~~h~~--------~V-~~la~spdg~~LaSgs~  827 (835)
                      .+.....-...        .+ .+++...++++++.||.
T Consensus       636 ~~W~~~~~p~~~~~~~~p~~~gh~~~~~~~g~i~v~GGg  674 (695)
T 2zwa_A          636 ETLTSIPISRRIWEDHSLMLAGFSLVSTSMGTIHIIGGG  674 (695)
T ss_dssp             TEEEECCCCHHHHHHSCCCCSSCEEECC---CEEEECCE
T ss_pred             CeEEEeeccccccCCCCccceeeeEEEeCCCEEEEEeCC
Confidence            87763221100        00 23333455577777764

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=95.76  E-value=0.66  Score=51.34  Aligned_cols=140  Identities=11%  Similarity=0.105  Sum_probs=89.2

Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-------CceEEEEecCCCEEEEEEcCCcEEEEECCCCe---------
Q 003271          650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-------GATQMRFQPRLGRILAAAIENYISILDVETQV---------  713 (835)
Q Consensus       650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-------~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~---------  713 (835)
                      .++..+++.-  ++.||.-++......+.++.       .+..+..+|+|.+++.. .+..|.|..+..+.         
T Consensus        30 ~n~t~i~~a~--~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~-g~~~V~Vv~LP~~~~~~~~~~~~  106 (452)
T 3pbp_A           30 QNGTRIVFIQ--DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLF-NDNEIFVMEVPWGYSNVEDVSIQ  106 (452)
T ss_dssp             TTTTEEEEEE--TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEE-CSSEEEEEECCTTCSCCCCHHHH
T ss_pred             cCCCEEEEEE--CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEe-cCCeEEEEEecCccccCcccccc
Confidence            3444455443  56788777764433333322       47789999998877766 45688888877221         


Q ss_pred             ---EEEEEcC------CCCCeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCcceE--------EEeecCCCceEEE
Q 003271          714 ---CRLKLQG------HKNQVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECI--------HELSCTGNKFHSC  772 (835)
Q Consensus       714 ---~i~~l~~------h~~~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i--------~~l~~~~~~V~sv  772 (835)
                         ..+.+.-      ...+|..+.|+|-+   ..|++-. |+.|++||+..... +..        ..+......|.++
T Consensus       107 ~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~-~P~~L~k~~~~fg~d~~~~ev~S~  185 (452)
T 3pbp_A          107 DAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQE-KPIVLNKPNNSFGLDARVNDITDL  185 (452)
T ss_dssp             HTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTS-CCEEESCCCSEEESCSSCCCEEEE
T ss_pred             cccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCC-CCcchhccccccCCCcccceEEEE
Confidence               1122221      25679999999953   4555555 99999999987322 122        1112233678999


Q ss_pred             EEeCCCCEEEEEE--cCCeEEEE
Q 003271          773 VFHPTFPSLLVIG--CYETLELW  793 (835)
Q Consensus       773 ~fspdg~~L~sgs--~dg~I~Iw  793 (835)
                      +|..++-.|++.+  ..|.|+-.
T Consensus       186 ~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          186 EFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             EECTTSSCEEEEECTTSCEEEEE
T ss_pred             EEcCCCcEEEEEecCCCCCEEEE
Confidence            9999988888866  67777644

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=95.74  E-value=0.74  Score=54.87  Aligned_cols=237  Identities=8%  Similarity=-0.004  Sum_probs=122.7

Q ss_pred             EEE-EeCCCCEEEEEe-----CCCeEEEEEcCCCeEEE-Eec-cCCC------CeEEEEECCCCCEEEEEE---------
Q 003271          560 SCH-FSPDGKLLATGG-----HDKKAVLWCTESFTVKS-TLE-EHTQ------WITDVRFSPSLSRLATSS---------  616 (835)
Q Consensus       560 sl~-fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~i~-~l~-~h~~------~V~sv~fspdg~~Latgs---------  616 (835)
                      .+. ++||+++++.+-     .-..|+++|+.+++.+. .+. .-..      ....++|..+ ..++.+.         
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence            344 889999876642     22479999999998763 111 0000      1133477633 3444332         


Q ss_pred             --CCCeEEEEecCCCCc-eeEEeecCCCCe-EEEEEcCCCCc----EEEEEe---CCCcEEEEECCC--CeeeeEeecCc
Q 003271          617 --ADRTVRVWDTENPDY-SLRTFTGHSTTV-MSLDFHPSKED----LLCSCD---NNSEIRYWSINN--GSCAGVFKSGA  683 (835)
Q Consensus       617 --~Dg~I~IWDl~t~~~-~~~~~~~h~~~V-~sl~fsp~g~~----ll~sgs---~Dg~I~iwDl~s--~~~~~~~~~~i  683 (835)
                        ....|+.|.+-+... ....+.+....+ .+...+.++..    ++++.+   ....+++.|...  ++........-
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  291 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPSD  291 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCTT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCCc
Confidence              125689998876532 234444433333 34455666663    455543   224567777653  33222222112


Q ss_pred             eEEEEecCCCEEEEE----------EcCCcEEEEECCCCe--------EEEEEc-CCCCCeEEEEEcCCCCEEEEEe-CC
Q 003271          684 TQMRFQPRLGRILAA----------AIENYISILDVETQV--------CRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DE  743 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~----------s~dg~I~IwDl~t~~--------~i~~l~-~h~~~I~sl~fspdg~~Lasgs-Dg  743 (835)
                      ..+.....+..++..          ...+.|.++|+.++.        ....+. .....+..+.|..+ .++++.. ++
T Consensus       292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~~~~  370 (711)
T 4hvt_A          292 ATLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATYDNV  370 (711)
T ss_dssp             CEEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEEETT
T ss_pred             ceEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEEECC
Confidence            222333443333321          235678889887631        111232 23446778888876 4444444 66


Q ss_pred             --eEEEEEcCCCCCcceEEE-eecC-CCceEEEEEeCCCCEEEEE-EcC---CeEEEEEcCCCcEE
Q 003271          744 --LVRVWSIGSGSKGECIHE-LSCT-GNKFHSCVFHPTFPSLLVI-GCY---ETLELWNMTENKTL  801 (835)
Q Consensus       744 --~I~IwDl~t~~~~~~i~~-l~~~-~~~V~sv~fspdg~~L~sg-s~d---g~I~IwDl~~~~~~  801 (835)
                        .|.++|+.++..  .+.. +... ...+..+.+.+++..+++. ++.   ..++.+|+. ++..
T Consensus       371 ~~~l~~~~~~~g~~--~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-~~~~  433 (711)
T 4hvt_A          371 VAKVVTFTLENEQW--TKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-HELK  433 (711)
T ss_dssp             EEEEEEECEETTEE--CCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-SCEE
T ss_pred             EEEEEEEECCCCce--EEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-CcEE
Confidence              577777765420  1122 2211 2456666666776554443 332   378888887 5443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=95.36  E-value=0.47  Score=56.50  Aligned_cols=186  Identities=10%  Similarity=0.063  Sum_probs=98.9

Q ss_pred             CCCCEEEEEeCC----CeEEEEEcCCCeEEEEe-c------cCCCCeEEEEECC-CCCEEEEEECC------CeEEEEec
Q 003271          565 PDGKLLATGGHD----KKAVLWCTESFTVKSTL-E------EHTQWITDVRFSP-SLSRLATSSAD------RTVRVWDT  626 (835)
Q Consensus       565 pdg~~Lasgs~D----g~I~VWd~~t~~~i~~l-~------~h~~~V~sv~fsp-dg~~Latgs~D------g~I~IWDl  626 (835)
                      .++.+++.||.+    ..+.+||..+.+-...- .      .....-.+++... ++.+++.|+.+      ..+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            456677777753    46888998876543322 1      1111112333333 67777777754      35788998


Q ss_pred             CCCCceeEEeecCC--CCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEee--------cCceEEEEecC-CC
Q 003271          627 ENPDYSLRTFTGHS--TTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK--------SGATQMRFQPR-LG  693 (835)
Q Consensus       627 ~t~~~~~~~~~~h~--~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~--------~~i~~l~fsp~-~~  693 (835)
                      .+...  .......  ..-.+++...++ .+++.|+.++  .+.+||+.+.+....-.        .....+.+... +.
T Consensus       476 ~t~~W--~~~~~~p~~R~~h~~~~~~~~-~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~  552 (695)
T 2zwa_A          476 KTREW--SMIKSLSHTRFRHSACSLPDG-NVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQ  552 (695)
T ss_dssp             TTTEE--EECCCCSBCCBSCEEEECTTS-CEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTE
T ss_pred             CCCcE--EECCCCCCCcccceEEEEcCC-EEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCE
Confidence            87543  2221111  111223332343 4666776544  79999998876543321        11233555655 44


Q ss_pred             EEEEEEc--C-----CcEEEEECCCCe------EE--EEEcCCCCCeEEEEEcCCCCEEEEEe-C--------CeEEEEE
Q 003271          694 RILAAAI--E-----NYISILDVETQV------CR--LKLQGHKNQVHSVCWNTSGEYLASVS-D--------ELVRVWS  749 (835)
Q Consensus       694 ~ll~~s~--d-----g~I~IwDl~t~~------~i--~~l~~h~~~I~sl~fspdg~~Lasgs-D--------g~I~IwD  749 (835)
                      .++.|+.  +     +.+.+||+.+..      -.  .........-.+++...++++++.|+ +        ..|.+||
T Consensus       553 iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd  632 (695)
T 2zwa_A          553 GIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLD  632 (695)
T ss_dssp             EEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred             EEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEEEE
Confidence            5555654  2     458999998766      11  11111111112333334366666665 2        3589999


Q ss_pred             cCCC
Q 003271          750 IGSG  753 (835)
Q Consensus       750 l~t~  753 (835)
                      +.+.
T Consensus       633 ~~t~  636 (695)
T 2zwa_A          633 PLSE  636 (695)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            9876

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.25  E-value=1.7  Score=43.87  Aligned_cols=175  Identities=11%  Similarity=-0.045  Sum_probs=96.4

Q ss_pred             CCCEEEEEECCCeEEEEecCCCCc----eeEEeecC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee------
Q 003271          608 SLSRLATSSADRTVRVWDTENPDY----SLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC------  675 (835)
Q Consensus       608 dg~~Latgs~Dg~I~IWDl~t~~~----~~~~~~~h--~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~------  675 (835)
                      ...+|++...| +|++=.......    ......+.  =..+.+++|+|++. +.+.  .+|.++-.+..+...      
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~-LYaV--~~G~Ly~~~~~t~~~~~W~~s   78 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGE-LYGV--LNDKIYKGTPPTHDNDNWMGR   78 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSC-EEEE--ETTEEEEESCCCSTTCCHHHH
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCcc-EEEE--eCCeEEEECCCCCCccccccc
Confidence            34567777777 655544443331    01111222  24678999999876 4444  578887777655221      


Q ss_pred             eeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeE-------EEEEcCCCCCeEEEEEcCCCCEEEEEeCCe
Q 003271          676 AGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVC-------RLKLQGHKNQVHSVCWNTSGEYLASVSDEL  744 (835)
Q Consensus       676 ~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~-------i~~l~~h~~~I~sl~fspdg~~LasgsDg~  744 (835)
                      ...+.    .....+.|.+++...++  .||.|+-++-.+...       ...-..--..+..|.|.|+|.+.++. |+.
T Consensus        79 ~t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~-dg~  155 (236)
T 1tl2_A           79 AKKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH-GQQ  155 (236)
T ss_dssp             CEEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE-TTE
T ss_pred             ccEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe-CCc
Confidence            11121    11478889999777666  669988887643111       11111112467999999999999888 888


Q ss_pred             EEEEEcCCCCCc---ceEEEee-cCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271          745 VRVWSIGSGSKG---ECIHELS-CTGNKFHSCVFHPTFPSLLVIGCYETLE  791 (835)
Q Consensus       745 I~IwDl~t~~~~---~~i~~l~-~~~~~V~sv~fspdg~~L~sgs~dg~I~  791 (835)
                      ++-....+....   .....+. ..-....-+.|.+++...++.  ++.|+
T Consensus       156 lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~l~~v~--~g~~Y  204 (236)
T 1tl2_A          156 FYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGVQ--GGKFY  204 (236)
T ss_dssp             EEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEEE--TTEEE
T ss_pred             EEecCCCCCCCcccccccceeccCCcceEEEEEECCCCcEEEEe--CCeEE
Confidence            654333221100   0111111 222234446688888754444  66443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.96  E-value=6.1  Score=44.35  Aligned_cols=229  Identities=10%  Similarity=0.023  Sum_probs=114.0

Q ss_pred             CEEEEEEeCCCC-EEEEEeCCCeEEEEEcCCC---eEEEEecc---------CCCCeEEEEECCC----CCEEEEEEC--
Q 003271          557 KVESCHFSPDGK-LLATGGHDKKAVLWCTESF---TVKSTLEE---------HTQWITDVRFSPS----LSRLATSSA--  617 (835)
Q Consensus       557 ~V~sl~fSpdg~-~Lasgs~Dg~I~VWd~~t~---~~i~~l~~---------h~~~V~sv~fspd----g~~Latgs~--  617 (835)
                      .-+.|+|.|||. .|+++...|.|++++.+..   ..+..+..         .......|+|+|+    +.+.++-+.  
T Consensus        15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~   94 (463)
T 2wg3_C           15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ   94 (463)
T ss_dssp             SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred             CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence            467899999996 4555677899999975432   12222211         1356889999996    433333332  


Q ss_pred             C----------CeEEEEecCCC---------CceeEEee--cCCCCeEEEEEcCCCCcEEEEEeCC--------------
Q 003271          618 D----------RTVRVWDTENP---------DYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNN--------------  662 (835)
Q Consensus       618 D----------g~I~IWDl~t~---------~~~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~D--------------  662 (835)
                      +          ..|.-|.+...         ...+..+.  ........|.|.|||..+|.+|+..              
T Consensus        95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~  174 (463)
T 2wg3_C           95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSD  174 (463)
T ss_dssp             CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCS
T ss_pred             CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCC
Confidence            1          14444665421         01121121  1123467899999987555554321              


Q ss_pred             --CcEEEEECCCC------e-------------eeeEeec---CceEEEEecCC-----C-EEEEEEcCC----cEEEEE
Q 003271          663 --SEIRYWSINNG------S-------------CAGVFKS---GATQMRFQPRL-----G-RILAAAIEN----YISILD  708 (835)
Q Consensus       663 --g~I~iwDl~s~------~-------------~~~~~~~---~i~~l~fsp~~-----~-~ll~~s~dg----~I~IwD  708 (835)
                        |.|.-.|....      .             ....+..   ....++|+|..     . +++++...+    .-.|..
T Consensus       175 ~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~ei~~  254 (463)
T 2wg3_C          175 FTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDSNGKNRSSARILQ  254 (463)
T ss_dssp             CTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC------CEEEEE
T ss_pred             CCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEecccCCCCCCCCeEee
Confidence              33444555431      0             0111221   25568899873     2 344332212    123333


Q ss_pred             CCCC------eEEEEEcCCC-CCeEEEEEcC-------CCCEEEEEeCCeEEEEEcCCCCCcceEEEe-e--------cC
Q 003271          709 VETQ------VCRLKLQGHK-NQVHSVCWNT-------SGEYLASVSDELVRVWSIGSGSKGECIHEL-S--------CT  765 (835)
Q Consensus       709 l~t~------~~i~~l~~h~-~~I~sl~fsp-------dg~~LasgsDg~I~IwDl~t~~~~~~i~~l-~--------~~  765 (835)
                      +..+      .++..+..|. ..+..+.|-.       .|.+|++.-.+.|....+...........+ .        ..
T Consensus       255 i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  334 (463)
T 2wg3_C          255 IIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCRGYF  334 (463)
T ss_dssp             EC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSCSCC
T ss_pred             eccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCcccccccc
Confidence            3222      2333343221 4677777743       234555443666665555443211111112 1        12


Q ss_pred             CCceEEEEEeCCCCEEEEEE
Q 003271          766 GNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       766 ~~~V~sv~fspdg~~L~sgs  785 (835)
                      ...+..+.+.|+|..+++..
T Consensus       335 ~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          335 SGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             CSEEEEEEECTTCCEEEEEE
T ss_pred             cCcceEEEECCCCCEEEEec
Confidence            35789999999998766665

>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A

Probab=94.35  E-value=0.012  Score=66.27  Aligned_cols=15  Identities=20%  Similarity=0.268  Sum_probs=7.4

Q ss_pred             hHHHHHHHhhhhccc
Q 003271           55 WWSVFWDIFIARTNE   69 (835)
Q Consensus        55 ww~~Fwdif~a~~~~   69 (835)
                      .|..+|+++......
T Consensus       335 ~~~~~~~~~~~~~~~  349 (449)
T 3iot_A          335 QMSAFWYAVRTAVIN  349 (449)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHH
Confidence            345555555544443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=93.84  E-value=10  Score=42.41  Aligned_cols=227  Identities=13%  Similarity=0.075  Sum_probs=115.5

Q ss_pred             CCeEEEEECCCCC-EEEEEECCCeEEEEecCCCC--ceeEEe----e-----cCCCCeEEEEEcCC---CCcEEEEEeC-
Q 003271          598 QWITDVRFSPSLS-RLATSSADRTVRVWDTENPD--YSLRTF----T-----GHSTTVMSLDFHPS---KEDLLCSCDN-  661 (835)
Q Consensus       598 ~~V~sv~fspdg~-~Latgs~Dg~I~IWDl~t~~--~~~~~~----~-----~h~~~V~sl~fsp~---g~~ll~sgs~-  661 (835)
                      ..-+.|+|.|++. .|+++...|.|++++.....  ..+..+    .     ........|+|+|+   +..++++-+. 
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~   93 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTN   93 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEEC
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCC
Confidence            3467899999986 56666789999999754321  111111    1     11356789999996   2334444332 


Q ss_pred             -C----------CcEEEEECCCC----------eeeeEee-----cCceEEEEecCCCEEEEEEcCC-------------
Q 003271          662 -N----------SEIRYWSINNG----------SCAGVFK-----SGATQMRFQPRLGRILAAAIEN-------------  702 (835)
Q Consensus       662 -D----------g~I~iwDl~s~----------~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg-------------  702 (835)
                       +          ..|.-|.+..+          +.+..+.     .....++|.|++..+++.+..+             
T Consensus        94 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~  173 (463)
T 2wg3_C           94 QERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLS  173 (463)
T ss_dssp             CCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCC
T ss_pred             CCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCCCCccccccCcC
Confidence             1          14555665421          2222222     2256799999987666655432             


Q ss_pred             ----cEEEEECCCC---------------------eEEEEEcCCCCCeEEEEEcCC-----CCE-EEEEeC-C----eEE
Q 003271          703 ----YISILDVETQ---------------------VCRLKLQGHKNQVHSVCWNTS-----GEY-LASVSD-E----LVR  746 (835)
Q Consensus       703 ----~I~IwDl~t~---------------------~~i~~l~~h~~~I~sl~fspd-----g~~-LasgsD-g----~I~  746 (835)
                          .|.-+|....                     ..+.. .+|.. ...++|+|.     |.+ ++.+.. +    .-.
T Consensus       174 ~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a-~G~RN-p~gla~dp~tg~~~G~l~~~~~D~~G~~~~~~e  251 (463)
T 2wg3_C          174 DFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFA-HGLHD-PGRCAVDRHPTDININLTILCSDSNGKNRSSAR  251 (463)
T ss_dssp             SCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEE-ECCSS-CCBEEEESSCSSTTCSEEEEEECC------CEE
T ss_pred             CCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEE-ECCCC-cceEEECCCCCCcccceEEEecccCCCCCCCCe
Confidence                2333333321                     00111 12222 346889986     443 433321 2    233


Q ss_pred             EEEcCCCCC---cceEEEeecCC-CceEEEEEeCCCC------EEEEEEcCCeEEEEEcCCCc----EEEec--------
Q 003271          747 VWSIGSGSK---GECIHELSCTG-NKFHSCVFHPTFP------SLLVIGCYETLELWNMTENK----TLTLS--------  804 (835)
Q Consensus       747 IwDl~t~~~---~~~i~~l~~~~-~~V~sv~fspdg~------~L~sgs~dg~I~IwDl~~~~----~~~l~--------  804 (835)
                      |..+..+..   ...+..+..+. ..+..+.|-....      .++++...+.|....++...    ...+.        
T Consensus       252 i~~i~~G~~yG~~~P~~~~~~~~g~Ap~G~~~Y~G~~fP~~~g~~f~~~~~g~i~~~~~~~~~~~~~~~~~~~g~~~~~~  331 (463)
T 2wg3_C          252 ILQIIKGKDYESEPSLLEFKPFSNGPLVGGFVYRGCQSERLYGSYVFGDRNGNFLTLQQSPVTKQWQEKPLCLGTSGSCR  331 (463)
T ss_dssp             EEEEC----CCSCCCCEECCC----CEEEEEECCCSSCTTTTTCEEEEETTSCEEEEEC-----CCEEEEECEEETTSSC
T ss_pred             EeeeccCCCCCCCCCeEEeeCCCCccccceEEEeCCCChhhcceEEEecCCCcEEEEEeCCCCceeeEEEeecCCccccc
Confidence            444433321   12344444321 4667777753321      25666666777666665432    11221        


Q ss_pred             -cCCCCeeEEEEeCCCCEEEEEE
Q 003271          805 -AHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       805 -~h~~~V~~la~spdg~~LaSgs  826 (835)
                       .....+.++.+.|||.++++..
T Consensus       332 ~~~~~r~~~v~~~pdG~Lyv~~~  354 (463)
T 2wg3_C          332 GYFSGHILGFGEDELGEVYILSS  354 (463)
T ss_dssp             SCCCSEEEEEEECTTCCEEEEEE
T ss_pred             ccccCcceEEEECCCCCEEEEec
Confidence             1235789999999999887765

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.80  E-value=2.8  Score=47.88  Aligned_cols=184  Identities=15%  Similarity=0.159  Sum_probs=110.9

Q ss_pred             CCCcEEEEEeCCCcEEEEECCCCeeeeEeec----CceEEEEe--cCCCEEEEEEc-------CCcE------------E
Q 003271          651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----GATQMRFQ--PRLGRILAAAI-------ENYI------------S  705 (835)
Q Consensus       651 ~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----~i~~l~fs--p~~~~ll~~s~-------dg~I------------~  705 (835)
                      ||+++++---.+..|...+++..++-..+..    .+..++|.  |+.+++++++.       ||..            .
T Consensus       141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~  220 (638)
T 3sbq_A          141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYN  220 (638)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEE
T ss_pred             eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEE
Confidence            4666666555678899999999888777663    36677776  78888888875       2221            1


Q ss_pred             EEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-C---------------CeEEEEEcCC-------CCC--cc--e
Q 003271          706 ILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-D---------------ELVRVWSIGS-------GSK--GE--C  758 (835)
Q Consensus       706 IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-D---------------g~I~IwDl~t-------~~~--~~--~  758 (835)
                      ..|..+.+....+.- ......+...++|.+.++.+ +               ..|.++++..       ++.  ..  -
T Consensus       221 ~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g  299 (638)
T 3sbq_A          221 AIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK  299 (638)
T ss_dssp             EEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred             EEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence            123333322222211 12333445567777777665 2               1466666531       100  00  0


Q ss_pred             EEEeec---------------CCCceEEEEEeCCCCEEEEEEcC-CeEEEEEcCC------CcE-------EEeccCCCC
Q 003271          759 IHELSC---------------TGNKFHSCVFHPTFPSLLVIGCY-ETLELWNMTE------NKT-------LTLSAHDKL  809 (835)
Q Consensus       759 i~~l~~---------------~~~~V~sv~fspdg~~L~sgs~d-g~I~IwDl~~------~~~-------~~l~~h~~~  809 (835)
                      +..+.+               .......|.++|||+++++++.- .+|.|+|++.      .++       .....-.-.
T Consensus       300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlG  379 (638)
T 3sbq_A          300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLG  379 (638)
T ss_dssp             CCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSC
T ss_pred             eeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCc
Confidence            111111               12345668899999999988874 4999999874      221       222234456


Q ss_pred             eeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          810 VSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       810 V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ....+|.++|....|.--|..|.-|+
T Consensus       380 PlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          380 PLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             EEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             ccEEEECCCCceEeeeeecceEEEEe
Confidence            78899999996556666899999985

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.33  E-value=1.9  Score=44.97  Aligned_cols=238  Identities=13%  Similarity=0.047  Sum_probs=119.0

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      .|..++....- .++. . ||.|+.|-......+..-......|..|+...+.. ++. . ||.|+.|-...... +-..
T Consensus        25 ~i~~ia~G~~h-~~~l-~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~~hs-~~l-~-~G~v~~wG~n~~Gq-lg~P   97 (282)
T 3qhy_B           25 GVDAIAGGYFH-GLAL-K-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNYHS-LAL-K-DGEVIAWGGNEDGQ-TTVP   97 (282)
T ss_dssp             SCCEEEECSSE-EEEE-E-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECSSEE-EEE-E-TTEEEEEECCTTST-TCCC
T ss_pred             CCcEEEeCCCe-EEEE-E-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCCCEE-EEE-E-CCEEEEeeCCCCCC-CCCC
Confidence            35555554332 2333 4 88888886543211111111233577777754432 333 4 89999997654322 1111


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---eecCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FKSGATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~---~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      ..-...|..|+.-..  +.+ .-. ||.|+.|-....-.+..   ....+..++.  ...+.++.. ||.|+.|-....-
T Consensus        98 ~~~~~~v~~ia~G~~--hs~-al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~--G~~~~~~l~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           98 AEARSGVDAIAAGAW--ASY-ALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVK-NGGVIAWGDNYFG  170 (282)
T ss_dssp             GGGSSSEEEEEEETT--EEE-EEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEE-TTEEEEEECCTTS
T ss_pred             cccCCCeEEEECcCC--EEE-EEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEc--ccCEEEEEE-CCEEEEecCCCCC
Confidence            111346777776543  233 334 99999998765322111   1122333333  333444444 7888888665321


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          714 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       714 ~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      .+..-......|..|+...+.. ++. .||.|+.|-.......-   .-......|..++.....  .++.. ++.|+.|
T Consensus       171 qlg~p~~~~~~v~~i~~G~~hs-~al-~~G~v~~wG~n~~gqlg---~p~~~~~~v~~i~~G~~h--~~al~-~g~v~~w  242 (282)
T 3qhy_B          171 QTTVPAEAQSGVDDVAGGIFHS-LAL-KDGKVIAWGDNRYKQTT---VPTEALSGVSAIASGEWY--SLALK-NGKVIAW  242 (282)
T ss_dssp             TTSCCGGGGSSEEEEEECSSEE-EEE-ETTEEEEEECCTTSTTC---CCGGGGSSCCEEEECSSC--EEEEE-TTEEEEE
T ss_pred             CCCCceecCCCeEEEEecCCEE-EEE-ECCeEEEEECCCCCCCC---CCcccCCCceEEEcCCCE--EEEEE-CCEEEEe
Confidence            1100011134577776654433 344 79999999765432110   000112345566554433  33344 9999999


Q ss_pred             EcCCCcEEEeccCCCCeeEEEEeCCC
Q 003271          794 NMTENKTLTLSAHDKLVSSLAASTVN  819 (835)
Q Consensus       794 Dl~~~~~~~l~~h~~~V~~la~spdg  819 (835)
                      -......+.+   ...|..|+.....
T Consensus       243 G~n~~gq~~v---~~~v~~iaaG~~h  265 (282)
T 3qhy_B          243 GSSRTAPSSV---QSGVSSIEAGPNA  265 (282)
T ss_dssp             STTCCCCGGG---SSCEEEEEECSSC
T ss_pred             cCCCCccccC---CCCcEEEEECcCe
Confidence            7655433222   3357777665443

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=93.20  E-value=1.6  Score=45.60  Aligned_cols=215  Identities=11%  Similarity=0.001  Sum_probs=111.5

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~  677 (835)
                      ..|..|+....  +.+.-. ||.|+.|-...... +.........|..|+....  +.++. . ||.|+.|-....-.+.
T Consensus        24 ~~i~~ia~G~~--h~~~l~-~G~v~~wG~n~~Gq-lg~p~~~~~~i~~ia~G~~--hs~~l-~-~G~v~~wG~n~~Gqlg   95 (282)
T 3qhy_B           24 SGVDAIAGGYF--HGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGNY--HSLAL-K-DGEVIAWGGNEDGQTT   95 (282)
T ss_dssp             SSCCEEEECSS--EEEEEE-TTEEEEEECCSSST-TSCCGGGGSCCCEEEECSS--EEEEE-E-TTEEEEEECCTTSTTC
T ss_pred             CCCcEEEeCCC--eEEEEE-CCEEEEEeCCCCCC-CCCCccCCCCEEEEEeCCC--EEEEE-E-CCEEEEeeCCCCCCCC
Confidence            35777776544  333335 89999997654322 1111112335777776533  33433 4 8999999876532211


Q ss_pred             ---EeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCC
Q 003271          678 ---VFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS  754 (835)
Q Consensus       678 ---~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~  754 (835)
                         .+...+..++..  ..+.++.. +|.|+.|-....-.+-.-......|..++......++ .. ||.|+.|-.....
T Consensus        96 ~P~~~~~~v~~ia~G--~~hs~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G~~~~~~-l~-~G~v~~wG~n~~g  170 (282)
T 3qhy_B           96 VPAEARSGVDAIAAG--AWASYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGGVYTALA-VK-NGGVIAWGDNYFG  170 (282)
T ss_dssp             CCGGGSSSEEEEEEE--TTEEEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEE-EE-TTEEEEEECCTTS
T ss_pred             CCcccCCCeEEEECc--CCEEEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcccCEEEE-EE-CCEEEEecCCCCC
Confidence               112234444433  34555666 8999999765321110011123457777654433322 23 8999999765432


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      ...   ........|..++....  +.++. .+|.|+.|-....-.+ .-......|..|+..... .++..  ||.|+.
T Consensus       171 qlg---~p~~~~~~v~~i~~G~~--hs~al-~~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~h-~~al~--~g~v~~  241 (282)
T 3qhy_B          171 QTT---VPAEAQSGVDDVAGGIF--HSLAL-KDGKVIAWGDNRYKQTTVPTEALSGVSAIASGEWY-SLALK--NGKVIA  241 (282)
T ss_dssp             TTS---CCGGGGSSEEEEEECSS--EEEEE-ETTEEEEEECCTTSTTCCCGGGGSSCCEEEECSSC-EEEEE--TTEEEE
T ss_pred             CCC---CceecCCCeEEEEecCC--EEEEE-ECCeEEEEECCCCCCCCCCcccCCCceEEEcCCCE-EEEEE--CCEEEE
Confidence            111   00111245666665444  33333 6899999976543222 111122457777755433 33333  888888


Q ss_pred             e
Q 003271          834 W  834 (835)
Q Consensus       834 W  834 (835)
                      |
T Consensus       242 w  242 (282)
T 3qhy_B          242 W  242 (282)
T ss_dssp             E
T ss_pred             e
Confidence            8

>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}

Probab=92.85  E-value=12  Score=39.99  Aligned_cols=262  Identities=7%  Similarity=0.008  Sum_probs=136.3

Q ss_pred             CCEEEEEeCCCeEEEEEcCCC-------eEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEe---cCCCC-----
Q 003271          567 GKLLATGGHDKKAVLWCTESF-------TVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENPD-----  630 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~-------~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD---l~t~~-----  630 (835)
                      ..++++.+.+|.|+--.+.+.       +-+..+. ...+.+..+........|+.-+..|.++...   +....     
T Consensus         3 E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G   82 (327)
T 3uc1_A            3 EDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARG   82 (327)
T ss_dssp             CEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCC
T ss_pred             ccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCC
Confidence            346778888888887654321       1111111 1234555555544555666667777666554   33221     


Q ss_pred             ceeEEe--ecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCCe-------eeeEeec--CceEEEEecCCCEEEE
Q 003271          631 YSLRTF--TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNGS-------CAGVFKS--GATQMRFQPRLGRILA  697 (835)
Q Consensus       631 ~~~~~~--~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~~-------~~~~~~~--~i~~l~fsp~~~~ll~  697 (835)
                      .++..+  ......|.++...++  .+.+++..+.+|.|+...+....       ....++.  .+..+........++.
T Consensus        83 ~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~d~ill  162 (327)
T 3uc1_A           83 QHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLL  162 (327)
T ss_dssp             EEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTTCEEEE
T ss_pred             EEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCCCEEEE
Confidence            111111  112345665544332  24577788999999998875422       1122222  2444445556678999


Q ss_pred             EEcCCcEEEEECC--C---------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----cceEE-
Q 003271          698 AAIENYISILDVE--T---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIH-  760 (835)
Q Consensus       698 ~s~dg~I~IwDl~--t---------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~----~~~i~-  760 (835)
                      .+..|.+..+.+.  .         +.....+. ....|.++...+++.+|+..+ .|.++.-.+..-..    ..-+. 
T Consensus       163 ~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~  241 (327)
T 3uc1_A          163 VSANGQSIRFSATDEALRPMGRATSGVQGMRFN-IDDRLLSLNVVREGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLT  241 (327)
T ss_dssp             EETTSEEEEEECCTTTSCCCCTTSBCEESSCCC-TTCCEEEEEECCTTCEEEEEETTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred             EECCCeEEEEECcccccCcCCcCCCCeeeecCC-CCCEEEEEEEECCCCEEEEEeCCCcEEEEEHHHccccCcCCCcEEE
Confidence            9999998888776  2         11112222 345677776666666777776 89988887653211    01122 


Q ss_pred             -EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-------Eec--cCCCCeeEEEEeCC-CCEEEEEECCC
Q 003271          761 -ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-------TLS--AHDKLVSSLAASTV-NGMVASASHDK  829 (835)
Q Consensus       761 -~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-------~l~--~h~~~V~~la~spd-g~~LaSgs~DG  829 (835)
                       .+......+..+....+...|+..+.+|.+..++...-...       ...  .....|.++...+. ...+.+.+.+|
T Consensus       242 ~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~~~~~g  321 (327)
T 3uc1_A          242 VMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNAVDANG  321 (327)
T ss_dssp             SCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC-------------
T ss_pred             EEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEEEecCC
Confidence             22222345666655555667888888888777776432211       111  22455666665543 34455555554

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=90.62  E-value=22  Score=38.68  Aligned_cols=163  Identities=10%  Similarity=0.080  Sum_probs=95.9

Q ss_pred             cEEEEECCCC--eeeeEeec---------CceEEEEe---cC----CCEEEEEEc-CCcEEEEECCCCeEEEEEcC----
Q 003271          664 EIRYWSINNG--SCAGVFKS---------GATQMRFQ---PR----LGRILAAAI-ENYISILDVETQVCRLKLQG----  720 (835)
Q Consensus       664 ~I~iwDl~s~--~~~~~~~~---------~i~~l~fs---p~----~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~----  720 (835)
                      .|.+||+.+.  +.++.+.-         ....+++.   +.    +.+++.+.. .+.|.|||+.+++..+.+..    
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5667888887  77766542         25667777   22    345555553 57899999998876654421    


Q ss_pred             C--------------CCCeEEEEEcCC----CCEEEEEeCCeEEEEEcC-----CCCCcceEEEeecCC--CceEEEEEe
Q 003271          721 H--------------KNQVHSVCWNTS----GEYLASVSDELVRVWSIG-----SGSKGECIHELSCTG--NKFHSCVFH  775 (835)
Q Consensus       721 h--------------~~~I~sl~fspd----g~~LasgsDg~I~IwDl~-----t~~~~~~i~~l~~~~--~~V~sv~fs  775 (835)
                      .              ...|..|+++|+    ++.|+...=..-++|.+.     .......+..+-...  ..-...++.
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~~~~~D  283 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAIALAYD  283 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEEEEEEC
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcceEEEe
Confidence            0              136788999998    788888772223444433     221112233332222  334456675


Q ss_pred             -CCCCEEEEEEcCCeEEEEEcCC-C----cEE--EeccCCCCeeEEEEeCCCCEEEEEE
Q 003271          776 -PTFPSLLVIGCYETLELWNMTE-N----KTL--TLSAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       776 -pdg~~L~sgs~dg~I~IwDl~~-~----~~~--~l~~h~~~V~~la~spdg~~LaSgs  826 (835)
                       .+|..+++--....|..|+..+ .    ...  .....-..+.++++..++.+.+.++
T Consensus       284 ~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~sn  342 (381)
T 3q6k_A          284 PKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMSN  342 (381)
T ss_dssp             TTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEEC
T ss_pred             CCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEEC
Confidence             5665555555667999999876 1    112  2222233577888888887666654

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=89.81  E-value=25  Score=38.05  Aligned_cols=229  Identities=10%  Similarity=0.079  Sum_probs=116.3

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEecCCCC--------c-e-eEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 003271          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPD--------Y-S-LRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~--------~-~-~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i  667 (835)
                      .|..|+.  ...+.+.-..||.|+.|-.....        . . ...+.. ....+..++++.... ..+.-..||.|+.
T Consensus        54 ~i~~i~~--G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~-h~~al~~~G~v~~  130 (389)
T 3kci_A           54 RPVQLIG--GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGK-HCLALSSEGEVYS  130 (389)
T ss_dssp             CEEEEEE--ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCS-EEEEEETTSCEEE
T ss_pred             ceEEEEe--CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCC-eEEEEcCCCCEEE
Confidence            3445544  33456666789999999643211        0 0 111111 223344555554434 3445567999999


Q ss_pred             EECCCCe-----------eeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCC----------e-EEEEEcC-CC
Q 003271          668 WSINNGS-----------CAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQ----------V-CRLKLQG-HK  722 (835)
Q Consensus       668 wDl~s~~-----------~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~----------~-~i~~l~~-h~  722 (835)
                      |-....-           ....+.  .....+.+.....+.++...+|.|+.|-....          . ....+.. ..
T Consensus       131 wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~~  210 (389)
T 3kci_A          131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQG  210 (389)
T ss_dssp             EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECSSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTT
T ss_pred             EeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCcCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccCC
Confidence            9764311           011111  11233444555677788888999999965320          1 1111221 23


Q ss_pred             CCeEEEEEcCC-CCEEEEEeCCeEEEEEcCCCC------Ccc--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271          723 NQVHSVCWNTS-GEYLASVSDELVRVWSIGSGS------KGE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLEL  792 (835)
Q Consensus       723 ~~I~sl~fspd-g~~LasgsDg~I~IwDl~t~~------~~~--~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~I  792 (835)
                      ..|..++.... ...++...|+.|+.|-.....      ...  ....+.. ....|..++..  ..+.++...+|.|+.
T Consensus       211 ~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G--~~hs~alt~~G~v~~  288 (389)
T 3kci_A          211 HRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG--SQFSVALTKSGAVYT  288 (389)
T ss_dssp             SCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE--TTEEEEEETTSCEEE
T ss_pred             CeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC--CCEEEEEeCCCeEEE
Confidence            45777766442 333444449999999754310      000  1111111 12245555553  335666688899999


Q ss_pred             EEcCCC---------c---EEEeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          793 WNMTEN---------K---TLTLSAH-DKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       793 wDl~~~---------~---~~~l~~h-~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      |-....         .   +..+... ...|..|+..  ..+.+....||.|+.|
T Consensus       289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~G--~~h~~al~~~G~v~~w  341 (389)
T 3kci_A          289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIATG--SLHCVCCTEDGEVYTW  341 (389)
T ss_dssp             EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEEC--SSEEEEEETTCCEEEE
T ss_pred             EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEec--cCeEEEECCCCCEEEe
Confidence            965321         1   1122211 2346566543  3345555788888887

>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1

Probab=89.42  E-value=24  Score=37.37  Aligned_cols=231  Identities=7%  Similarity=0.035  Sum_probs=124.8

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCe----EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC---CCC-----ce
Q 003271          565 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD-----YS  632 (835)
Q Consensus       565 pdg~~Lasgs~Dg~I~VWd~~t~~----~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---t~~-----~~  632 (835)
                      ++..++++.+.+|.|+--.+.+.+    ....++.. +.+..+........|+..+..|.++-+...   ...     .+
T Consensus         3 ~~e~~~v~lT~~G~IKr~~~~~~~~~~~~~~~lke~-D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~G~~   81 (323)
T 1wp5_A            3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMKDT-DRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCCTT-CCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             cCCcEEEEEeCCCEEEEeEHHHhhhcCccccccCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCCCcC
Confidence            566788899999999877654221    11123333 345455444455677777788877666542   111     11


Q ss_pred             eEE-e-ecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC--------eeeeEeec--CceEEEEecCCCEEEEE
Q 003271          633 LRT-F-TGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG--------SCAGVFKS--GATQMRFQPRLGRILAA  698 (835)
Q Consensus       633 ~~~-~-~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~--------~~~~~~~~--~i~~l~fsp~~~~ll~~  698 (835)
                      +.. + ......|.++...++  ....++..+.+|.++...+...        .....++.  .+..+........++..
T Consensus        82 i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~~~~~~~i~l~  161 (323)
T 1wp5_A           82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV  161 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred             hhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEEeCCCCEEEEE
Confidence            101 1 112344655433332  1334667788999999887422        22222222  23334444456788899


Q ss_pred             EcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCC-EEEEEe-CCeEEEEEcCCC---CC-cceEEE--
Q 003271          699 AIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGE-YLASVS-DELVRVWSIGSG---SK-GECIHE--  761 (835)
Q Consensus       699 s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fspdg~-~Lasgs-Dg~I~IwDl~t~---~~-~~~i~~--  761 (835)
                      +.+|.+..|....         |.....+. ....|.++...+++. .|+..+ .|..+..++..-   .. .+-+..  
T Consensus       162 T~~G~~irf~~~ev~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~ll~vt~~G~gKr~~~~e~~~~~Rg~kGv~~~~  240 (323)
T 1wp5_A          162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR  240 (323)
T ss_dssp             ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred             eCCCcEEEEEHHHCcccCCCCcCEEEEEeC-CCCEEEEEEEEcCCCcEEEEEECCCceEEEEHHHccccCCCCCCEECee
Confidence            9999988887642         11222222 234566665444444 555555 888888877541   10 111222  


Q ss_pred             -eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          762 -LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       762 -l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                       +......+..+....++..+++.+..|.+..+++..
T Consensus       241 ~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~  277 (323)
T 1wp5_A          241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGD  277 (323)
T ss_dssp             CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGG
T ss_pred             ecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhh
Confidence             222333555444444455677888888776666644

>3mvd_K Regulator of chromosome condensation; protein-DNA complex, nucleosome core particle (NCP), NCP-CHR factor complex; HET: DNA; 2.90A {Drosophila melanogaster}

Probab=89.13  E-value=29  Score=37.87  Aligned_cols=226  Identities=5%  Similarity=-0.002  Sum_probs=117.8

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEecCCCC-----------ceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 003271          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~-----------~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i  667 (835)
                      .|..|+..  ..+.+.-..||.|+.|-.....           ...-........|..|+...   ...+.-..||.|+.
T Consensus        76 ~v~~va~G--~~h~~~l~~~G~v~~wG~n~~GqLG~~~~~~~~~~~P~~v~~~~~i~~va~G~---~hs~al~~~G~v~~  150 (423)
T 3mvd_K           76 DAVDISAG--GMHNLVLTKSGDIYSFGCNDEGALGRDTSEDGSESKPDLIDLPGKALCISAGD---SHSACLLEDGRVFA  150 (423)
T ss_dssp             SEEEEEEC--SSEEEEEETTSCEEEEECCSSSTTCSCCCSTTSSSSCEECCCSSCEEEEEECS---SEEEEEETTSCEEE
T ss_pred             CceEEeeC--CCeEEEEeCCCeEEEeECCCCcCCCCCCcCCccccCCeEEcCCCCEEEEEcCc---CeEEEEeCCCeEEE
Confidence            46666654  4466667789999999653211           00111111234566666543   23445567999999


Q ss_pred             EEC--CC-Cee---------e-eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCC----------------------
Q 003271          668 WSI--NN-GSC---------A-GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ----------------------  712 (835)
Q Consensus       668 wDl--~s-~~~---------~-~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~----------------------  712 (835)
                      |-.  .. +.+         . ..+......+.+.....+.++...+|.|+.|-....                      
T Consensus       151 wG~~~n~~GqlG~~~~~~~~~p~~~~~~~~i~~va~G~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~~~~~~~~~~  230 (423)
T 3mvd_K          151 WGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSERSISGEGRRGKRDL  230 (423)
T ss_dssp             EECEECSSSEEESBTTBCEEEEEESSTTCCEEEEEECSSEEEEEETTSCEEEEECCTTSTTSSCCTTTTTSCSTTTTTTT
T ss_pred             EeCCCCCCCCcCcCCCCCCceeeEecCCCcEEEEecCCCeEEEEecCCeEEEeeCCcCCccCCCcccccccccccccccc
Confidence            986  32 211         0 011122233444445567778888999999953211                      


Q ss_pred             -eEEEEEcCCCCCeEEEEEcCCCCEEEE-EeCCeEEEEEcCCCC--------CcceEEEeecCCCceEEEEEeCCCCEEE
Q 003271          713 -VCRLKLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       713 -~~i~~l~~h~~~I~sl~fspdg~~Las-gsDg~I~IwDl~t~~--------~~~~i~~l~~~~~~V~sv~fspdg~~L~  782 (835)
                       .+..........|..|+.... ..++. ..++.|+.|-.....        ..............|..++.  ...+.+
T Consensus       231 ~~p~~v~~~~~~~v~~i~~g~~-~~~~~~~~~g~v~~wG~n~~gqlg~~~~~~~~~~~p~~~~~~~v~~ia~--G~~ht~  307 (423)
T 3mvd_K          231 LRPTQLIITRAKPFEAIWATNY-CTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELKDIRHIAG--GQHHTV  307 (423)
T ss_dssp             SSCEEECCTTCCCEEEEEEETT-EEEEEETTTCCEEEEEECTTCTTSSCCTTCSEEEEEEEECCCSEEEEEE--CSSEEE
T ss_pred             cCCeEEeecCCccEEEEEECCc-EEEEEECCCCeEEEEeCCCCCcCCCCCCCCceeeeeEEcCCCCeEEEEc--ccCeEE
Confidence             111111122345666654432 22333 248888888754321        00111122222345655554  334567


Q ss_pred             EEEcCCeEEEEEcCCC---------c----EEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          783 VIGCYETLELWNMTEN---------K----TLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       783 sgs~dg~I~IwDl~~~---------~----~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      +...+|.|+.|-....         .    +..+..-...|..|+...  .+.+.-..||.|+.|
T Consensus       308 alt~~G~v~~wG~n~~GqLG~g~~~~~~~~p~~v~~l~~~v~~ia~G~--~hs~alt~~G~v~~w  370 (423)
T 3mvd_K          308 ILTTDLKCSVVGRPEYGRLGLGDVKDVVEKPTIVKKLTEKIVSVGCGE--VCSYAVTIDGKLYSW  370 (423)
T ss_dssp             EEETTCCEEEEECCGGGTTCSSSCCSCEEEEEECTTCCSCEEEEEEET--TEEEEEETTSCEEEE
T ss_pred             EEeCCCcEEEEECCCCCCCCCCCccccccCceEeccCCCCEEEEEcCC--CeEEEEcCCCCEEEE
Confidence            7788899999965321         1    112222333677776653  334444688889888

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=88.69  E-value=47  Score=39.74  Aligned_cols=145  Identities=16%  Similarity=0.155  Sum_probs=77.1

Q ss_pred             CCCEEEEEEeCC-CCEEEEEeCCCeEEEEEcCCCeEEEEeccC-------CCCeEEEEECCC-CCEEEEEECCCe----E
Q 003271          555 TSKVESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEH-------TQWITDVRFSPS-LSRLATSSADRT----V  621 (835)
Q Consensus       555 ~~~V~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h-------~~~V~sv~fspd-g~~Latgs~Dg~----I  621 (835)
                      .+.|.+|+++|. ...+++++..+.|...+ +.++.-..+..+       ...|.+|++.|. ...++.+..+..    .
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~-DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~~   92 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD-AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEWA   92 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE-TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSCC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec-CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCccc
Confidence            457999999985 34566677677766654 334444444332       246999999984 344555443211    3


Q ss_pred             EEEecCCCCceeEEeecC-------C--CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------cCc
Q 003271          622 RVWDTENPDYSLRTFTGH-------S--TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------SGA  683 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h-------~--~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------~~i  683 (835)
                      .||...++..........       .  ..+..++++|.....++.+...+.|. .....++.-..+.         ..+
T Consensus        93 ~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~-~S~DgG~TW~~~~~~~~~~~~~~~~  171 (789)
T 1sqj_A           93 AFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIW-KSSDRAKTWTNVTSIPDAFTNGIGY  171 (789)
T ss_dssp             EEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEE-EESSTTSSCEEETTSCCCCSTTTCE
T ss_pred             EEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEE-EECCCCcccCCCccCccccCCCCCe
Confidence            455444433323222110       1  13567888886555665665344332 2222232211111         236


Q ss_pred             eEEEEecCC-CEEEEEEcC
Q 003271          684 TQMRFQPRL-GRILAAAIE  701 (835)
Q Consensus       684 ~~l~fsp~~-~~ll~~s~d  701 (835)
                      ..+.++|.. +.++++..+
T Consensus       172 ~~i~~~p~~~~~~~~~~~~  190 (789)
T 1sqj_A          172 TSVIFDPERNGTIYASATA  190 (789)
T ss_dssp             EEEEECTTSTTCEEEEESS
T ss_pred             EEEEECCCCCCEEEEEEcC
Confidence            678888854 466676655

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=87.32  E-value=22  Score=42.12  Aligned_cols=220  Identities=10%  Similarity=0.056  Sum_probs=110.9

Q ss_pred             EEE-ECCCCCEEEEEEC-C----CeEEEEecCCCCceeEEee-cCCC------CeEEEEEcCCCCcEEEEEe--------
Q 003271          602 DVR-FSPSLSRLATSSA-D----RTVRVWDTENPDYSLRTFT-GHST------TVMSLDFHPSKEDLLCSCD--------  660 (835)
Q Consensus       602 sv~-fspdg~~Latgs~-D----g~I~IWDl~t~~~~~~~~~-~h~~------~V~sl~fsp~g~~ll~sgs--------  660 (835)
                      .+. ++|++++++.+-. .    ..|+++|+.+++..-..+. ..+.      ....++|..+ +.++++..        
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~-~~~~~~~~~~~~~~~~  211 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINK-DTIIFNLVLHKNEITS  211 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEET-TEEEECCCCSTTCBCT
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECC-CEEEEEeCCCCCCcCc
Confidence            344 8889887766422 2    3799999998764221222 0000      1134477633 44554421        


Q ss_pred             --CCCcEEEEECCCCe--eeeEeecC----ceEEEEecCCCE----EEE-EEcC---CcEEEEECCC--CeEEEEEcCCC
Q 003271          661 --NNSEIRYWSINNGS--CAGVFKSG----ATQMRFQPRLGR----ILA-AAIE---NYISILDVET--QVCRLKLQGHK  722 (835)
Q Consensus       661 --~Dg~I~iwDl~s~~--~~~~~~~~----i~~l~fsp~~~~----ll~-~s~d---g~I~IwDl~t--~~~i~~l~~h~  722 (835)
                        ....|+.|.+-+..  -...+...    ......+.++++    +++ .+.+   ..+++.|...  ++.+ .+....
T Consensus       212 ~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~  290 (711)
T 4hvt_A          212 SLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQ-KINMPS  290 (711)
T ss_dssp             TSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEE-ECCSCT
T ss_pred             CCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcce-EeecCC
Confidence              12468888886542  22233322    223344556552    333 3322   4567777653  3322 222122


Q ss_pred             CCeEEEEEcCCCCEEEEE-----------eCCeEEEEEcCCCCCc----ceEEE-e-ecCCCceEEEEEeCCCCEEEEEE
Q 003271          723 NQVHSVCWNTSGEYLASV-----------SDELVRVWSIGSGSKG----ECIHE-L-SCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       723 ~~I~sl~fspdg~~Lasg-----------sDg~I~IwDl~t~~~~----~~i~~-l-~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      . . .+..+.++.+++..           ..+.|.++|+.+....    ..... + ......+..+.|..+ ..+++..
T Consensus       291 ~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~~  367 (711)
T 4hvt_A          291 D-A-TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLATY  367 (711)
T ss_dssp             T-C-EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEEE
T ss_pred             c-c-eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEEE
Confidence            1 1 12334455555532           1567999998764210    11222 2 223445677888766 4556666


Q ss_pred             cCC--eEEEEEcCCCc--EEE-ec-cCCCCeeEEEEeCCCC-EEEEEE
Q 003271          786 CYE--TLELWNMTENK--TLT-LS-AHDKLVSSLAASTVNG-MVASAS  826 (835)
Q Consensus       786 ~dg--~I~IwDl~~~~--~~~-l~-~h~~~V~~la~spdg~-~LaSgs  826 (835)
                      .++  .|+++|+.++.  ... +. ...+.|..+.+++++. ++++.+
T Consensus       368 ~~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~s  415 (711)
T 4hvt_A          368 DNVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIE  415 (711)
T ss_dssp             ETTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEE
T ss_pred             ECCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEe
Confidence            666  67888877664  212 21 1134566666666665 444444

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=87.16  E-value=0.64  Score=39.35  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003271           10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD   41 (835)
Q Consensus        10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~   41 (835)
                      +-||.-|++||..+|+.+++.+|.+|.+++.+
T Consensus        11 eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~   42 (88)
T 1uuj_A           11 DELNRAIADYLRSNGYEEAYSVFKKEAELDMN   42 (88)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCC
Confidence            35899999999999999999999999988754

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=86.00  E-value=37  Score=35.61  Aligned_cols=222  Identities=10%  Similarity=0.033  Sum_probs=114.2

Q ss_pred             CCCCEEEEEECCCeEEEEecCCCCcee--------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC---CC---
Q 003271          607 PSLSRLATSSADRTVRVWDTENPDYSL--------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI---NN---  672 (835)
Q Consensus       607 pdg~~Latgs~Dg~I~IWDl~t~~~~~--------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl---~s---  672 (835)
                      |+..++++.+.+|.|+--.+.+-....        ..+. ..+.+..+........++ ..+..|.++.+..   ..   
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~k-e~D~l~~~~~~~~~~~ll-~fT~~G~~~~~~~~elp~~~~   78 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIK-EEDFIDRLLVANTHDHIL-CFSSRGRVYSMKVYQLPEATR   78 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEE-EEETTSEEEEEEGGGSCCCCS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeC-CCCEEEEEEEECCCCEEE-EEECCCEEEEEEhhHCcCCCC
Confidence            345678888999999887765422100        1122 223444443333334444 4455777665544   22   


Q ss_pred             ---Ceeee---EeecC--ceEEEEe---cCCCEEEEEEcCCcEEEEECCC-------CeEEEEEcCCCCCeEEEEEcCC-
Q 003271          673 ---GSCAG---VFKSG--ATQMRFQ---PRLGRILAAAIENYISILDVET-------QVCRLKLQGHKNQVHSVCWNTS-  733 (835)
Q Consensus       673 ---~~~~~---~~~~~--i~~l~fs---p~~~~ll~~s~dg~I~IwDl~t-------~~~i~~l~~h~~~I~sl~fspd-  733 (835)
                         |..+.   .+..+  +..+...   .++.+++.++..|.++...+..       +.....+..+ ..+..+....+ 
T Consensus        79 ~a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~-d~lv~~~~~~~~  157 (307)
T 1zi0_A           79 GARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDG-DELIGVDLTSGE  157 (307)
T ss_dssp             SSCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTT-CCEEEEEEECTT
T ss_pred             CCCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCC-CEEEEEEEeCCC
Confidence               22111   12222  3333221   3456799999999999887642       2222233334 45555444444 


Q ss_pred             CCEEEEEeCCeEEEEEcCCCCC------cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCc--------
Q 003271          734 GEYLASVSDELVRVWSIGSGSK------GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENK--------  799 (835)
Q Consensus       734 g~~LasgsDg~I~IwDl~t~~~------~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~--------  799 (835)
                      ..+++..++|.+..++...-..      +.....+. ....|.++....++..|++.+..|.++-.++....        
T Consensus       158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG  236 (307)
T 1zi0_A          158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKG  236 (307)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCC
T ss_pred             CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCC
Confidence            4445555589888887643210      11111232 34566666655566779999999988888773321        


Q ss_pred             EE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          800 TL--TLSAHDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       800 ~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      ..  .+..-.+.+..+....+...|+..+.+|.+.
T Consensus       237 ~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~i  271 (307)
T 1zi0_A          237 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLV  271 (307)
T ss_dssp             EESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEE
T ss_pred             EEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEE
Confidence            11  2222335555554444445555566666543

>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1

Probab=85.87  E-value=37  Score=35.62  Aligned_cols=229  Identities=9%  Similarity=0.029  Sum_probs=123.9

Q ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCeE-------E--EEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc---
Q 003271          564 SPDGKLLATGGHDKKAVLWCTESFTV-------K--STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY---  631 (835)
Q Consensus       564 Spdg~~Lasgs~Dg~I~VWd~~t~~~-------i--~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~---  631 (835)
                      -++..++++.+.+|.|+--.+...+.       +  ..++.. +.+..+........++..+..|.++-+....-..   
T Consensus         5 i~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~-D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~r   83 (312)
T 1suu_A            5 MQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDG-DEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSSR   83 (312)
T ss_dssp             ---CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTT-CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC---
T ss_pred             cCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCC-CEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCCc
Confidence            34667889999999999887654321       1  122322 3455555555556788888899877776542110   


Q ss_pred             -----e---eEEeecCCCCeEEEEEcCC--CCcEEEEEeCCCcEEEEECCCC-------eeeeEee--cCceEEEEecCC
Q 003271          632 -----S---LRTFTGHSTTVMSLDFHPS--KEDLLCSCDNNSEIRYWSINNG-------SCAGVFK--SGATQMRFQPRL  692 (835)
Q Consensus       632 -----~---~~~~~~h~~~V~sl~fsp~--g~~ll~sgs~Dg~I~iwDl~s~-------~~~~~~~--~~i~~l~fsp~~  692 (835)
                           .   ...+. ....|.++...++  ....++..+..|.++...+...       .....+.  ..+..+.....+
T Consensus        84 ~~~G~~i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~~~~~~~  162 (312)
T 1suu_A           84 ASKGQNISELINLG-DQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSAEIVFKD  162 (312)
T ss_dssp             ----CBGGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEEEEECTT
T ss_pred             cCCCcChhhccCCC-CCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEEEEeCCC
Confidence                 0   00112 2344555543321  2234556788999998887432       2222222  224444444456


Q ss_pred             CEEEEEEcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC----Ccce
Q 003271          693 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS----KGEC  758 (835)
Q Consensus       693 ~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~----~~~~  758 (835)
                      ..++..+.+|.+..+.+..         |.....+. ....|.++....++..|++.+ .|.++.+++..-.    ...-
T Consensus       163 ~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~-~~d~vv~~~~v~~~~~l~~vt~~G~~kr~~~~e~~~~~R~~kG  241 (312)
T 1suu_A          163 EKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLK-EGDLFVKVLSVKENPYLLIVSENGYGKRLNMSKISELKRGATG  241 (312)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCC-TTCCEEEEEECTTCSEEEEEETTSEEEEEEGGGSCBCCTTCCC
T ss_pred             CEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeC-CCCEEEEEEEECCCCeEEEEECCCceEEEEHHHhcccCCCCCC
Confidence            7899999999998887753         22222333 245566665555556566666 8899988875321    0111


Q ss_pred             EEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          759 IHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       759 i~~l~---~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      +..+.   .....+..+........++..+..|.+.-...
T Consensus       242 v~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~  281 (312)
T 1suu_A          242 YTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVA  281 (312)
T ss_dssp             EECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEG
T ss_pred             EEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEc
Confidence            22222   22344444433344556677777775444444

>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}

Probab=84.18  E-value=50  Score=35.65  Aligned_cols=232  Identities=10%  Similarity=0.042  Sum_probs=128.6

Q ss_pred             EeCCCCEEEEEeCCCeEEEEEcCC---------CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC---CCC
Q 003271          563 FSPDGKLLATGGHDKKAVLWCTES---------FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD  630 (835)
Q Consensus       563 fSpdg~~Lasgs~Dg~I~VWd~~t---------~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---t~~  630 (835)
                      +-++..++++.+.+|.|+--.+.+         +.....++. .+.+..+........|+..+..|.++-+...   ...
T Consensus         3 lI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke-~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~   81 (370)
T 3l6v_A            3 LIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKE-EDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG   81 (370)
T ss_dssp             CCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSC-CCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred             cccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCC-CCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence            456788999999999999865432         223344443 4566666666666777777888877666542   111


Q ss_pred             -----ceeEEe--ecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCCCe-------eeeEee--cCceEEEEecCC
Q 003271          631 -----YSLRTF--TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINNGS-------CAGVFK--SGATQMRFQPRL  692 (835)
Q Consensus       631 -----~~~~~~--~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s~~-------~~~~~~--~~i~~l~fsp~~  692 (835)
                           ..+..+  ......|.++....  +....++.++..|.++...+....       ....++  ..+..+......
T Consensus        82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~~~~~~  161 (370)
T 3l6v_A           82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVALTDGD  161 (370)
T ss_dssp             TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEEEECSC
T ss_pred             cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEEEeCCC
Confidence                 011110  12335566554432  123366688889999998864322       122222  223334444555


Q ss_pred             CEEEEEEcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcC-------------------------------
Q 003271          693 GRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNT-------------------------------  732 (835)
Q Consensus       693 ~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fsp-------------------------------  732 (835)
                      ..++..+..|.+..|+...         |.....+. ....|.++...+                               
T Consensus       162 ~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~-~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~~~~~  240 (370)
T 3l6v_A          162 RDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLA-KGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPAVIDV  240 (370)
T ss_dssp             CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEECCC-----------------------------
T ss_pred             ceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeC-CCCEEEEEEEecccccccccccccccccccccccccccccccc
Confidence            6788888889888886542         11111222 234455554433                               


Q ss_pred             ----CCCEEEEEe-CCeEEEEEcCCCC----CcceEE--EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          733 ----SGEYLASVS-DELVRVWSIGSGS----KGECIH--ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       733 ----dg~~Lasgs-Dg~I~IwDl~t~~----~~~~i~--~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                          ++.+|++.+ .|..+...+..-.    ...-+.  .+....+.+..+.+..+...|+..+..|.+.-..+.
T Consensus       241 ~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~  315 (370)
T 3l6v_A          241 ADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGS  315 (370)
T ss_dssp             ------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGG
T ss_pred             ccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHh
Confidence                345677777 8888888775321    111122  222333456555555555667777877766655553

>3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens}

Probab=84.01  E-value=50  Score=35.54  Aligned_cols=232  Identities=11%  Similarity=0.061  Sum_probs=119.7

Q ss_pred             EEEEEEeCCCCEEEEEeCCCeEEEEEcCC-----------CeEEEEecc-CCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          558 VESCHFSPDGKLLATGGHDKKAVLWCTES-----------FTVKSTLEE-HTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-----------~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      |..++..  ....+.-..||.|+.|-...           ......+.. ....+..++++....+.+.-..||.|+.|-
T Consensus        55 i~~i~~G--~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~wG  132 (389)
T 3kci_A           55 PVQLIGG--EQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWG  132 (389)
T ss_dssp             EEEEEEE--TTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEEE
T ss_pred             eEEEEeC--CCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEEe
Confidence            4444443  33555556788888885321           111222222 223455677776667777778999999996


Q ss_pred             cCCCC---------c-eeEEeec-CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe---------e--eeEee---
Q 003271          626 TENPD---------Y-SLRTFTG-HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS---------C--AGVFK---  680 (835)
Q Consensus       626 l~t~~---------~-~~~~~~~-h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~---------~--~~~~~---  680 (835)
                      .....         . ....+.. ....|..|+.-.   ...+.-..+|.|+.|-....-         .  ...+.   
T Consensus       133 ~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G~---~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~  209 (389)
T 3kci_A          133 EAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGG---AHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ  209 (389)
T ss_dssp             CCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECS---SEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred             CCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeCc---CeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence            43211         0 0111111 123566666543   234455679999999764310         0  01111   


Q ss_pred             -cCceEEEEecCCCEEEEEEcCCcEEEEECCC----------C-eEEEEEcC-CCCCeEEEEEcCCCCEEEEEeCCeEEE
Q 003271          681 -SGATQMRFQPRLGRILAAAIENYISILDVET----------Q-VCRLKLQG-HKNQVHSVCWNTSGEYLASVSDELVRV  747 (835)
Q Consensus       681 -~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t----------~-~~i~~l~~-h~~~I~sl~fspdg~~LasgsDg~I~I  747 (835)
                       ..+..++......+.++...+|.|+.|-...          . .....+.. ....|..|+.... ..++...||.|+.
T Consensus       210 ~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G~~-hs~alt~~G~v~~  288 (389)
T 3kci_A          210 GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQ-FSVALTKSGAVYT  288 (389)
T ss_dssp             TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEETT-EEEEEETTSCEEE
T ss_pred             CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCCCC-EEEEEeCCCeEEE
Confidence             1233444333336777788899999996432          0 11122221 2224666654322 2334444889999


Q ss_pred             EEcCCC------CCcc--eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          748 WSIGSG------SKGE--CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       748 wDl~t~------~~~~--~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      |-....      ....  ....+.. ....|..++.  ...+.++...+|.|+.|-...
T Consensus       289 wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~--G~~h~~al~~~G~v~~wG~n~  345 (389)
T 3kci_A          289 WGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT--GSLHCVCCTEDGEVYTWGDND  345 (389)
T ss_dssp             EECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE--CSSEEEEEETTCCEEEEECCT
T ss_pred             EeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe--ccCeEEEECCCCCEEEeeCCC
Confidence            975431      0001  1111111 2234555554  334567778899999997653

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=83.05  E-value=0.82  Score=38.94  Aligned_cols=33  Identities=24%  Similarity=0.416  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHhcCCCCCC
Q 003271           10 KMLDVYIYDYLLKRKLHASAKAFQTEGKVSTDP   42 (835)
Q Consensus        10 ~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~~   42 (835)
                      .-+|-.||-||..+|+..+|-+|-+|.++...+
T Consensus         6 devN~LI~RYLqEsGf~hsAf~f~~Es~i~~~~   38 (90)
T 2xtc_A            6 DEVNFLVYRYLQESGFSHSAFTFGIESHISQSN   38 (90)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHTTGGGSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhcCCccc
Confidence            357999999999999999999999999887543

>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}

Probab=82.97  E-value=49  Score=34.62  Aligned_cols=231  Identities=9%  Similarity=0.066  Sum_probs=124.1

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCeEEE---------EeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC---CCC--
Q 003271          565 PDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE---NPD--  630 (835)
Q Consensus       565 pdg~~Lasgs~Dg~I~VWd~~t~~~i~---------~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~---t~~--  630 (835)
                      |+..++++.+.+|.|+--.+.+.+...         .++.+ +.+..+........|+..+..|.++-+...   ...  
T Consensus         1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~-D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~   79 (307)
T 1zi0_A            1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEE-DFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRG   79 (307)
T ss_dssp             CCCEEEEEEETTSEEEEEECC---------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSS
T ss_pred             CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCC-CEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCC
Confidence            355678889999999887776543221         12222 344444444455677777788876666542   211  


Q ss_pred             ---ceeE-Ee-ecCCCCeEEEEEcC--CCCcEEEEEeCCCcEEEEECCC-------CeeeeEee--cCceEEEEecCCCE
Q 003271          631 ---YSLR-TF-TGHSTTVMSLDFHP--SKEDLLCSCDNNSEIRYWSINN-------GSCAGVFK--SGATQMRFQPRLGR  694 (835)
Q Consensus       631 ---~~~~-~~-~~h~~~V~sl~fsp--~g~~ll~sgs~Dg~I~iwDl~s-------~~~~~~~~--~~i~~l~fsp~~~~  694 (835)
                         ..+. .+ ......|.++...+  +....++..+.+|.++...+..       +.....+.  ..+..+........
T Consensus        80 a~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~~~~  159 (307)
T 1zi0_A           80 ARGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDE  159 (307)
T ss_dssp             SCCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECTTCE
T ss_pred             CCCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCCCCE
Confidence               1110 01 12334566654422  2233566788899999987642       21111222  22334444445678


Q ss_pred             EEEEEcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC---C---cce
Q 003271          695 ILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS---K---GEC  758 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~---~---~~~  758 (835)
                      ++..+.+|.+..++...         +.....+. ....|.++....++..|+..+ .|.++..++..-.   .   ...
T Consensus       160 i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~-~~d~Vv~~~~~~~~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~kG~~  238 (307)
T 1zi0_A          160 VMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLG-EGDKVVSLIVPRGDGAILTATQNGYGKRTAVAEYPTKSRATKGVI  238 (307)
T ss_dssp             EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEECCCSSCEEEEEETTSEEEEECGGGSCCCCTTSCCEE
T ss_pred             EEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeC-CCCEEEEEEEecCCCEEEEEEcCCceEEEEHHHhccCCCCCCCEE
Confidence            88899999988887642         12222232 345666665555556666666 8888888774321   1   111


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCC
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~  797 (835)
                      ...+....+.+..+....+...|+..+.+|.+.-+++..
T Consensus       239 ~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~  277 (307)
T 1zi0_A          239 SIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE  277 (307)
T ss_dssp             SSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred             eeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence            222333335555555544556677888888776666654

>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}

Probab=81.24  E-value=53  Score=33.81  Aligned_cols=195  Identities=10%  Similarity=-0.010  Sum_probs=108.9

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEE---ecCCCCceeEEeecCCCCeEEEEEcCC-CCcEEEEEeCCCcEEEEECCCC
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVW---DTENPDYSLRTFTGHSTTVMSLDFHPS-KEDLLCSCDNNSEIRYWSINNG  673 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IW---Dl~t~~~~~~~~~~h~~~V~sl~fsp~-g~~ll~sgs~Dg~I~iwDl~s~  673 (835)
                      +.+..+.......+|+.-+.+|.++--   ++...... . +......|..+.. .+ .+..++..+.+|.|+...+...
T Consensus        24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~-~-ll~~~e~i~~v~~-~~~~~~~~v~~T~~G~iKr~~l~~~  100 (276)
T 3no0_A           24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKV-S-LKSREEKIVGAFI-REKFGNRLLLATKKGYVKKIPLAEF  100 (276)
T ss_dssp             CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEEC-C-CSSTTCCEEEEEE-GGGSCSEEEEEETTSEEEEEEGGGT
T ss_pred             CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCccc-c-cCCCCCEEEEEEC-CcCCCCEEEEEeCCCEEEEEEHHHh
Confidence            345444444444456666677766543   33322110 0 1223456666644 32 3446778889999999887543


Q ss_pred             e------eeeEeec--CceEEEEecCCCEEEEEEcCCcEEEEECCC---------CeEEEEEcCCCCCeEEEEEcCCCCE
Q 003271          674 S------CAGVFKS--GATQMRFQPRLGRILAAAIENYISILDVET---------QVCRLKLQGHKNQVHSVCWNTSGEY  736 (835)
Q Consensus       674 ~------~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t---------~~~i~~l~~h~~~I~sl~fspdg~~  736 (835)
                      .      ....++.  .+..+........++..+..|.++.+....         |.....+. ....|.++...+++.+
T Consensus       101 ~~~~~G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~-~~d~vv~~~~~~~~~~  179 (276)
T 3no0_A          101 EYKAQGMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGARGVQGIKLE-KNDETSGLRIWNGEPY  179 (276)
T ss_dssp             TTCSTTEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCC-TTCCEEEEEEESSCSE
T ss_pred             hhhcCCeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccC-CCCEEEEEEEeCCCCE
Confidence            2      2222322  244444455567899999999988887532         22222233 2355666655555556


Q ss_pred             EEEEe-CCeEEEEEcCCCC----CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEE--EEcCC
Q 003271          737 LASVS-DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL--WNMTE  797 (835)
Q Consensus       737 Lasgs-Dg~I~IwDl~t~~----~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~I--wDl~~  797 (835)
                      ++..+ .|.++...+..-.    ..+-+..+ ...+.+..+........++..+.+|.+..  ++..+
T Consensus       180 ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i-~~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~  246 (276)
T 3no0_A          180 LLVITAKGRVKKISHEEIPKTNRGVKGTEVS-GTKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKD  246 (276)
T ss_dssp             EEEEETTSCEEEEEGGGSCCCCTTCCCEECC-CSSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGG
T ss_pred             EEEEeCCCcEEEeEHHHcccCCCCCcceEEE-cCCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHH
Confidence            66666 8888888874321    11222223 23455655554445556888888887777  77643

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=80.08  E-value=1.1e+02  Score=36.60  Aligned_cols=142  Identities=13%  Similarity=0.152  Sum_probs=71.5

Q ss_pred             CCCeEEEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecC-------CCCeEEEEEcCCCCcEEEEEeCCCc----
Q 003271          597 TQWITDVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGH-------STTVMSLDFHPSKEDLLCSCDNNSE----  664 (835)
Q Consensus       597 ~~~V~sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h-------~~~V~sl~fsp~g~~ll~sgs~Dg~----  664 (835)
                      ...|.+|+++|. ...++++...+.|...+  .+......+..+       ...|.+|+++|.....++.+..+..    
T Consensus        14 ~g~i~~i~~~p~~~~~~~a~~~~ggv~rS~--DgG~tW~~~~~~~~~~~~~~~~i~~ia~dp~~~~~i~~~~g~~~~~~~   91 (789)
T 1sqj_A           14 GGYITGIVAHPKTKDLLYARTDIGGAYRWD--AGTSKWIPLNDFIEAQDMNIMGTESIALDPNNPDRLYLAQGRYVGDEW   91 (789)
T ss_dssp             CSCEEEEEECSSSTTCEEEEESSSCEEEEE--TTTTEEEESCTTCCGGGGGGCSEEEEEEETTEEEEEEEEECSCTTSSC
T ss_pred             CCcEEEEEECCCCCCEEEEEecCCCEEEec--CCCCCeeECccCCCcccccCCceeEEEECCCCCCEEEEEeCccCCCcc
Confidence            468999999985 45667777777655443  222223333322       2469999999864444444432211    


Q ss_pred             EEEE-ECCCCeeeeEeec------------CceEEEEecCC-CEEEEEEcCCcEEEEECC---CCeEEEEEc---CCCCC
Q 003271          665 IRYW-SINNGSCAGVFKS------------GATQMRFQPRL-GRILAAAIENYISILDVE---TQVCRLKLQ---GHKNQ  724 (835)
Q Consensus       665 I~iw-Dl~s~~~~~~~~~------------~i~~l~fsp~~-~~ll~~s~dg~I~IwDl~---t~~~i~~l~---~h~~~  724 (835)
                      -.|| ....++.-.....            .+..++++|.. +.++++...+.|.. ...   +.+.+....   .....
T Consensus        92 ~~v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~~~~gl~~-S~DgG~TW~~~~~~~~~~~~~~~  170 (789)
T 1sqj_A           92 AAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGTRTEGIWK-SSDRAKTWTNVTSIPDAFTNGIG  170 (789)
T ss_dssp             CEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEECSSSCEEE-ESSTTSSCEEETTSCCCCSTTTC
T ss_pred             cEEEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEeccCCEEE-ECCCCcccCCCccCccccCCCCC
Confidence            2233 3333433222211            13468888764 44555543444332 222   223222111   11245


Q ss_pred             eEEEEEcCC-CCEEEEEe
Q 003271          725 VHSVCWNTS-GEYLASVS  741 (835)
Q Consensus       725 I~sl~fspd-g~~Lasgs  741 (835)
                      +..|.++|. +..|+++.
T Consensus       171 ~~~i~~~p~~~~~~~~~~  188 (789)
T 1sqj_A          171 YTSVIFDPERNGTIYASA  188 (789)
T ss_dssp             EEEEEECTTSTTCEEEEE
T ss_pred             eEEEEECCCCCCEEEEEE
Confidence            788998874 34455444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	835
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-32
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	2e-19
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-30
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-26
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-19
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-18
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-16
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	9e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-26
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	6e-15
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-21
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-20
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-14
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	3e-08
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	8e-20
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-16
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-09
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-19
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-19
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-17
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-13
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	2e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-17
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-17
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	7e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-17
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	0.004
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-16
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-10
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-15
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-09
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-14
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	7e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-13
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-11
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	1e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.003
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-13
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-12
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	3e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-11
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-08
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	5e-06
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	9e-06
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	8e-04

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  127 bits (319), Expect = 1e-32
 Identities = 50/285 (17%), Positives = 105/285 (36%), Gaps = 5/285 (1%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            +K+ + H+  D +LL +   D K ++W + +      +   + W+    ++PS + +A 
Sbjct: 55  LAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVAC 114

Query: 615 SSADRTVRVWDTENPDYS---LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
              D    +++ +  + +    R   GH+  +    F    + +  S D    +      
Sbjct: 115 GGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETG 174

Query: 672 NGSCAGVFKSGATQMRFQPRLGRILAAAIENY-ISILDVETQVCRLKLQGHKNQVHSVCW 730
             +      +G           R+  +   +    + DV   +CR    GH++ ++++C+
Sbjct: 175 QQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICF 234

Query: 731 NTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL 790
             +G   A+ SD+           +    +          S  F  +   LL        
Sbjct: 235 FPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNC 294

Query: 791 ELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
            +W+  +      L+ HD  VS L  +     VA+ S D  +KIW
Sbjct: 295 NVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 88.6 bits (218), Expect = 2e-19
 Identities = 40/194 (20%), Positives = 64/194 (32%), Gaps = 42/194 (21%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA 617
           V S   +PD +L  +G  D  A LW       + T   H   I  + F P+ +  AT S 
Sbjct: 187 VMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD 246

Query: 618 DRTVRV-WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           D T R+     + +    +       + S+ F  S   LL +  ++     W       A
Sbjct: 247 DATCRLFDLRADQELMTYSHDNIICGITSVSFSKS-GRLLLAGYDDFNCNVWDALKADRA 305

Query: 677 GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEY 736
           GV                                       L GH N+V  +     G  
Sbjct: 306 GV---------------------------------------LAGHDNRVSCLGVTDDGMA 326

Query: 737 LASVS-DELVRVWS 749
           +A+ S D  +++W+
Sbjct: 327 VATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 86.3 bits (212), Expect = 8e-19
 Identities = 29/128 (22%), Positives = 40/128 (31%), Gaps = 4/128 (3%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQW--IT 601
                Q      S + +  F P+G   ATG  D    L+   +     T         IT
Sbjct: 215 EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGIT 274

Query: 602 DVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
            V FS S   L     D    VWD    D       GH   V  L         + +   
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKAD-RAGVLAGHDNRVSCLGVTDD-GMAVATGSW 332

Query: 662 NSEIRYWS 669
           +S ++ W+
Sbjct: 333 DSFLKIWN 340

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  119 bits (299), Expect = 3e-30
 Identities = 61/304 (20%), Positives = 115/304 (37%), Gaps = 26/304 (8%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            S V    F P   ++ +   D    +W  E+   + TL+ HT  + D+ F  S   LA+
Sbjct: 17  RSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLAS 76

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            SAD T+++WD +  +                        +  S D   ++         
Sbjct: 77  CSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCV 136

Query: 675 CAGVFKSGATQMRFQPRLGRILAAA-IENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733
                     +M    + G ++A+   +  + +  V T+ C+ +L+ H++ V  + W   
Sbjct: 137 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPE 196

Query: 734 GEYLASV---------------------SDELVRVWSIGSGSKGECIHELSCTGNKFHSC 772
             Y +                        D+ +++W +   S G C+  L    N     
Sbjct: 197 SSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDV---STGMCLMTLVGHDNWVRGV 253

Query: 773 VFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCV 831
           +FH     +L     +TL +W+    + + TL+AH+  V+SL        V + S D+ V
Sbjct: 254 LFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTV 313

Query: 832 KIWK 835
           K+W+
Sbjct: 314 KVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  108 bits (270), Expect = 2e-26
 Identities = 62/270 (22%), Positives = 106/270 (39%), Gaps = 28/270 (10%)

Query: 590 KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH 649
           K  L  H   +T V F P  S + ++S D T++VWD E  D+  RT  GH+ +V  + F 
Sbjct: 10  KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDF-ERTLKGHTDSVQDISFD 68

Query: 650 PSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQ--PRLGRILAAAIENYISIL 707
            S + L     + +   +          +             P    I++A+ +  I + 
Sbjct: 69  HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 128

Query: 708 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTG 766
           +V+T  C     GH+  V  V  N  G  +AS S D+ VRVW + +    EC  EL    
Sbjct: 129 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT---KECKAELREHR 185

Query: 767 NKFHSCVFHPTFPSLLVIGCY--------------------ETLELWNMTENKTL-TLSA 805
           +      + P      +                        +T+++W+++    L TL  
Sbjct: 186 HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVG 245

Query: 806 HDKLVSSLAASTVNGMVASASHDKCVKIWK 835
           HD  V  +   +    + S + DK +++W 
Sbjct: 246 HDNWVRGVLFHSGGKFILSCADDKTLRVWD 275

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 87.5 bits (215), Expect = 3e-19
 Identities = 29/126 (23%), Positives = 51/126 (40%), Gaps = 2/126 (1%)

Query: 543 FTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITD 602
           +         +  +  E+      G  L +G  DK   +W   +     TL  H  W+  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN 662
           V F      + + + D+T+RVWD +N    ++T   H   V SLDFH +    + +   +
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKR-CMKTLNAHEHFVTSLDFHKT-APYVVTGSVD 310

Query: 663 SEIRYW 668
             ++ W
Sbjct: 311 QTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 85.6 bits (210), Expect = 1e-18
 Identities = 40/226 (17%), Positives = 72/226 (31%), Gaps = 62/226 (27%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T    +        V     + DG L+A+  +D+   +W   +   K+ L EH   +  +
Sbjct: 132 TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECI 191

Query: 604 RF--------------------SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTV 643
            +                          L + S D+T+++WD       L T  GH   V
Sbjct: 192 SWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM-CLMTLVGHDNWV 250

Query: 644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENY 703
             + FH      + SC ++  +R W   N  C                            
Sbjct: 251 RGVLFHSG-GKFILSCADDKTLRVWDYKNKRCMKTLN----------------------- 286

Query: 704 ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVW 748
                            H++ V S+ ++ +  Y+ + S D+ V+VW
Sbjct: 287 ----------------AHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 77.1 bits (188), Expect = 7e-16
 Identities = 20/82 (24%), Positives = 35/82 (42%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
           T      +    + V    F   GK + +   DK   +W  ++     TL  H  ++T +
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL 295

Query: 604 RFSPSLSRLATSSADRTVRVWD 625
            F  +   + T S D+TV+VW+
Sbjct: 296 DFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.1 bits (92), Expect = 9e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%)

Query: 791 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
           + W     +   LS H   V+ +    V  ++ SAS D  +K+W
Sbjct: 1   KEWIPRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVW 44

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  109 bits (271), Expect = 5e-26
 Identities = 73/324 (22%), Positives = 118/324 (36%), Gaps = 44/324 (13%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------------------H 596
           TS V    FS DG+ LATG  +K   ++     ++ + L +                   
Sbjct: 62  TSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSS 120

Query: 597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL 656
             +I  V FSP    LAT + DR +R+WD EN    +              F    + + 
Sbjct: 121 DLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVS 180

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAA-IENYISILDVETQVCR 715
            S D    I        S     + G T +   P  G+ +AA  ++  + + D ET    
Sbjct: 181 GSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLV 240

Query: 716 LKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK---------GEC 758
            +L        GHK+ V+SV +   G+ + S S D  V++W++ + +          G C
Sbjct: 241 ERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300

Query: 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAAST 817
                   +   S         +L       +  W+  + N  L L  H   V S+A + 
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVAN 360

Query: 818 V------NGMVASASHDKCVKIWK 835
                    + A+ S D   +IWK
Sbjct: 361 GSSLGPEYNVFATGSGDCKARIWK 384

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 77.9 bits (190), Expect = 9e-16
 Identities = 28/142 (19%), Positives = 55/142 (38%), Gaps = 18/142 (12%)

Query: 546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS------------TL 593
           +E +        V S  F+ DG+ + +G  D+   LW  ++   KS            T 
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTY 304

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-- 651
             H  ++  V  + +   + + S DR V  WD ++ +  L    GH  +V+S+       
Sbjct: 305 IGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGN-PLLMLQGHRNSVISVAVANGSS 363

Query: 652 ---KEDLLCSCDNNSEIRYWSI 670
              + ++  +   + + R W  
Sbjct: 364 LGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.2 bits (183), Expect = 6e-15
 Identities = 41/204 (20%), Positives = 70/204 (34%), Gaps = 43/204 (21%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-------HTQWITDVRFSPSLSRLA 613
                DGK +A G  D+   +W +E+  +   L+        H   +  V F+     + 
Sbjct: 211 AVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVV 270

Query: 614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG 673
           + S DR+V++W+ +N +    + T +S T            L  +   N E         
Sbjct: 271 SGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDE--------- 321

Query: 674 SCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733
                                IL+ + +  +   D ++    L LQGH+N V SV     
Sbjct: 322 --------------------YILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANG 361

Query: 734 ------GEYLASVS-DELVRVWSI 750
                     A+ S D   R+W  
Sbjct: 362 SSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.4 bits (173), Expect = 1e-13
 Identities = 51/277 (18%), Positives = 99/277 (35%), Gaps = 38/277 (13%)

Query: 595 EHTQWITDVRFSPSLSRLATSSADRTVRVWDTENP-----------------DYSLRTFT 637
           +HT  +  V+FS     LAT   ++T +V+   +                  + +  +  
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG--SCAGVFKSGATQMRFQPRLGRI 695
                + S+ F P  + L    ++     +   N          +     + + P   ++
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKL 178

Query: 696 LAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS 754
           ++ + +  + I D+ T  C L L               G+Y+A+ S D  VRVW   +G 
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 755 KGECIHELSCTG----NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL--------- 801
             E +   + +G    +  +S VF     S++      +++LWN+               
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 802 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
               T   H   V S+A +  +  + S S D+ V  W
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFW 335

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.8 bits (169), Expect = 4e-13
 Identities = 16/79 (20%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV------RFSPS 608
              V S   + + + + +G  D+  + W  +S      L+ H   +  V         P 
Sbjct: 308 KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPE 367

Query: 609 LSRLATSSADRTVRVWDTE 627
            +  AT S D   R+W  +
Sbjct: 368 YNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.3 bits (134), Expect = 7e-09
 Identities = 37/280 (13%), Positives = 73/280 (26%), Gaps = 41/280 (14%)

Query: 591 STLEEHTQWITDVRFSPSLSR---LATSSADRTVRVWDTENP---DYSLRTFTGHSTTVM 644
           +    H++ I                    +    +++   P   D  L     H++ V 
Sbjct: 7   NQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVC 66

Query: 645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF---------------------KSGA 683
            + F    E L   C+     + + +++GS                              
Sbjct: 67  CVKFSNDGEYLATGCNKT--TQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYI 124

Query: 684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 743
             + F P  G+ LA   E+ +  +        + +     Q                   
Sbjct: 125 RSVCFSPD-GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183

Query: 744 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---------ETLELWN 794
              V      +    +      G    +    P     +  G           ET  L  
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVE 241

Query: 795 MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
             +++  + + H   V S+  +     V S S D+ VK+W
Sbjct: 242 RLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLW 281

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 93.7 bits (231), Expect = 4e-21
 Identities = 59/284 (20%), Positives = 105/284 (36%), Gaps = 18/284 (6%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
              V +C     G  + +G  D    +W   +     TL  HT  +   +   ++    +
Sbjct: 16  DDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGS 74

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
           +     V   +T    ++L   T     +   +          S   ++ +R W I  G 
Sbjct: 75  TDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV------VSGSRDATLRVWDIETGQ 128

Query: 675 CAGVFKSGATQMRFQPRLGRILA-AAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS 733
           C  V       +R     GR +   A +  + + D ET+ C   LQGH N+V+S+ ++  
Sbjct: 129 CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFD-- 186

Query: 734 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLEL 792
           G ++ S S D  +RVW +     G CIH L+   +             L+      T+++
Sbjct: 187 GIHVVSGSLDTSIRVWDV---ETGNCIHTLTGHQSLTSGMELKDNI--LVSGNADSTVKI 241

Query: 793 WNMTENKTLTLSAHDKLVSS--LAASTVNGMVASASHDKCVKIW 834
           W++   + L          S           V ++S D  VK+W
Sbjct: 242 WDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 90.3 bits (222), Expect = 4e-20
 Identities = 49/255 (19%), Positives = 88/255 (34%), Gaps = 13/255 (5%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
           W          L+ H   +         +R+ + S D T++VW        LRT  GH+ 
Sbjct: 1   WRRGELKSPKVLKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGK-CLRTLVGHTG 58

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIE 701
            V S     +      +          +           S    M    +       + +
Sbjct: 59  GVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVS--GSRD 116

Query: 702 NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 761
             + + D+ET  C   L GH   V  V ++       +  D +V+VW         C+H 
Sbjct: 117 ATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGA-YDFMVKVWDP---ETETCLHT 172

Query: 762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNG 820
           L    N+ +S  F      ++      ++ +W++     + TL+ H  L S +     + 
Sbjct: 173 LQGHTNRVYSLQFDGIH--VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DN 228

Query: 821 MVASASHDKCVKIWK 835
           ++ S + D  VKIW 
Sbjct: 229 ILVSGNADSTVKIWD 243

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.3 bits (178), Expect = 2e-14
 Identities = 39/202 (19%), Positives = 80/202 (39%), Gaps = 20/202 (9%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
                DG+ + +G +D    +W  E+ T   TL+ HT  +  ++F      + + S D +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI--HVVSGSLDTS 198

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           +RVWD E  +  + T TGH +    ++      ++L S + +S ++ W I  G C    +
Sbjct: 199 IRVWDVETGN-CIHTLTGHQSLTSGMELKD---NILVSGNADSTVKIWDIKTGQCLQTLQ 254

Query: 681 SG----ATQMRFQPRLGRILAAAIENYISILDVETQVC-----RLKLQGHKNQVHSVCWN 731
                 +     Q     ++ ++ +  + + D++T         L+  G    V  +  +
Sbjct: 255 GPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRAS 314

Query: 732 TSGEYLASVSDE-----LVRVW 748
            +    A  S        + V 
Sbjct: 315 NTKLVCAVGSRNGTEETKLLVL 336

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 3e-08
 Identities = 21/123 (17%), Positives = 42/123 (34%), Gaps = 14/123 (11%)

Query: 560 SCHFSPDGKLLATGGHDKKAVLW---CTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS 616
           +        +L +G  D    +W     +         +H   +T ++F+ +     TSS
Sbjct: 220 TSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFV--ITSS 277

Query: 617 ADRTVRVWDTENPDYSLRTFT-----GHSTTVMSLDFHPSKEDLLCSCDNNSE---IRYW 668
            D TV++WD +  +  +R        G    V  +    +K        N +E   +   
Sbjct: 278 DDGTVKLWDLKTGE-FIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

Query: 669 SIN 671
             +
Sbjct: 337 DFD 339

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.9 bits (221), Expect = 8e-20
 Identities = 38/306 (12%), Positives = 81/306 (26%), Gaps = 33/306 (10%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATS 615
           +    ++ D   +A   ++ +  ++      +     L+EH   +T V ++P  +R+ T 
Sbjct: 10  ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 616 SADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS- 674
             DR   VW  +   +                     E        +  I        + 
Sbjct: 70  GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129

Query: 675 ------CAGVFKSGATQMRFQPRLGRILAAAIENYISILDVET----------------- 711
                      +S    + + P    + A + +    I                      
Sbjct: 130 WWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMP 189

Query: 712 -QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGSKGECIHELSCTGNKF 769
                 +       VH VC++ +G  +A VS +  V +         +       +    
Sbjct: 190 FGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADA----DKKMAVATLASETLP 245

Query: 770 HSCVFHPTFPSLLVIGCYETLELWNM-TENKTLTLSAHDKLVSSLAASTVNGMVASASHD 828
              V   T  SL+  G      L+   +    L+      +    +   +       + D
Sbjct: 246 LLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLD 305

Query: 829 KCVKIW 834
           K     
Sbjct: 306 KKASSE 311

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.0 bits (190), Expect = 7e-16
 Identities = 39/265 (14%), Positives = 90/265 (33%), Gaps = 27/265 (10%)

Query: 596 HTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKED 654
             + I+   ++   +++A    +  V +++     +  +     H+  V  +D+ P   +
Sbjct: 6   LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAP-DSN 64

Query: 655 LLCSCDNNSEIRYWSINNGS-----CAGVFKSGATQMRFQPRLGRILAAAIENYISILDV 709
            + +C  +     W++   +             A  +R+ P   +    +    ISI   
Sbjct: 65  RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYF 124

Query: 710 ET----QVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE-LVRVWSIGSGS---------- 754
           E      VC+   +  ++ V S+ W+ +   LA+ S +   R++S               
Sbjct: 125 EQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184

Query: 755 -----KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 809
                 GE + E S +    H   F      +  +    T+ L +  +   +   A + L
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244

Query: 810 VSSLAASTVNGMVASASHDKCVKIW 834
                       + +A HD    ++
Sbjct: 245 PLLAVTFITESSLVAAGHDCFPVLF 269

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.5 bits (168), Expect = 4e-13
 Identities = 39/320 (12%), Positives = 86/320 (26%), Gaps = 32/320 (10%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWIT 601
            + +   +     +V    ++PD   + T G D+ A +W  +  T K TL      +   
Sbjct: 40  KWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99

Query: 602 DVRFSPSLSRLATSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC 659
            VR++P+  + A  S  R + +     EN  +  +       + +          LL + 
Sbjct: 100 CVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAG 159

Query: 660 DNNSEIRYWSINNGSCAGVFKSGATQMR---------FQPRLGRILAAAIENY------- 703
             + + R +S                 +              G +               
Sbjct: 160 SCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWV 219

Query: 704 -----ISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC 758
                + + D + ++    L      + +V + T    +A+  D    +++  S +    
Sbjct: 220 SHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAA---G 276

Query: 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS-- 816
                   +                    +               S H   VS ++    
Sbjct: 277 KLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSG 336

Query: 817 --TVNGMVASASHDKCVKIW 834
                    +   D  + IW
Sbjct: 337 GKAKCSQFCTTGMDGGMSIW 356

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 56.8 bits (135), Expect = 5e-09
 Identities = 18/117 (15%), Positives = 36/117 (30%), Gaps = 6/117 (5%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
             F  +  L+A  GHD   VL+  +S   K +                 +R    + D+ 
Sbjct: 249 VTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHP---SKEDLLCSCDNNSEIRYWSINNGS 674
                +      L   + H  +V  +       +K    C+   +  +  W + +  
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.8 bits (104), Expect = 3e-05
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 5/86 (5%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSP----SLS 610
               +                DKKA    + +         H   ++ +          S
Sbjct: 284 LDVPKQSSQRGLTARERFQNLDKKASSEGSAAAG-AGLDSLHKNSVSQISVLSGGKAKCS 342

Query: 611 RLATSSADRTVRVWDTENPDYSLRTF 636
           +  T+  D  + +WD  + + +L+  
Sbjct: 343 QFCTTGMDGGMSIWDVRSLESALKDL 368

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.5 bits (103), Expect = 3e-05
 Identities = 13/78 (16%), Positives = 26/78 (33%), Gaps = 2/78 (2%)

Query: 719 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777
                 +    WN     +A    +  V ++   SG+K   +HEL     +     + P 
Sbjct: 4   SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEK-SGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 778 FPSLLVIGCYETLELWNM 795
              ++  G      +W +
Sbjct: 63  SNRIVTCGTDRNAYVWTL 80

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.1 bits (219), Expect = 1e-19
 Identities = 40/288 (13%), Positives = 84/288 (29%), Gaps = 11/288 (3%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-----HTQWITDVRFSPSL 609
              V +   S   + + TGG      +W       KS + +        +I   +  P  
Sbjct: 51  GEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDG 109

Query: 610 SRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
             L       T+ +WD   P   ++     S              +  SC ++  I  W 
Sbjct: 110 CTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD 169

Query: 670 INNGSCAGVFKSGATQMRFQPRLGRILAAAI--ENYISILDVETQVCRLKLQGHKNQVHS 727
           ++N +    F+                       +         +  +L+     +Q+ S
Sbjct: 170 LHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFS 229

Query: 728 VCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY 787
           + +  +GE+   ++  +               ++L    +   S  F       +  G  
Sbjct: 230 LGYCPTGEW---LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKD 286

Query: 788 ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
             L  W      ++  S     V S   S  +  + + S DK   +++
Sbjct: 287 NLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 34/83 (40%), Gaps = 2/83 (2%)

Query: 715 RLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG--NKFHSC 772
           ++    H   V +V  +    ++ +     V+VW I        + +L C    N   SC
Sbjct: 44  QINTLNHGEVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSC 103

Query: 773 VFHPTFPSLLVIGCYETLELWNM 795
              P   +L+V G   TL +W++
Sbjct: 104 KLLPDGCTLIVGGEASTLSIWDL 126

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.6 bits (215), Expect = 2e-19
 Identities = 45/288 (15%), Positives = 87/288 (30%), Gaps = 32/288 (11%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVR 622
              D + + +G  D    +W   +   K  L  HT  +  +++   +          +  
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERV------IITGSSD 74

Query: 623 VWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---- 678
                    +            ++        ++ +C  +  I  W + + +   +    
Sbjct: 75  STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134

Query: 679 FKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLA 738
               A           I++A+ +  I + +  T      L GHK  +   C       + 
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIA--CLQYRDRLVV 192

Query: 739 S-VSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE-TLELWNMT 796
           S  SD  +R+W I      EC   L                   +V G Y+  +++W++ 
Sbjct: 193 SGSSDNTIRLWDI------ECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246

Query: 797 ENKTL----------TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
                          TL  H   V  L        + S+SHD  + IW
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (127), Expect = 3e-08
 Identities = 32/246 (13%), Positives = 73/246 (29%), Gaps = 51/246 (20%)

Query: 591 STLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP 650
               E ++ +  +++     ++ +   D T+++WD    +   R  TGH+ +V+ L +  
Sbjct: 9   HCRSETSKGVYCLQYDDQ--KIVSGLRDNTIKIWDKNTLE-CKRILTGHTGSVLCLQYDE 65

Query: 651 SKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVE 710
                  S          +    +           +RF   +    +      +  +   
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 711 TQVCRLK-LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 769
           T +   + L GH+  V+ V ++      AS  D  ++VW+  +    E +  L+      
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIVSAS-GDRTIKVWNTSTC---EFVRTLNGHKRGI 181

Query: 770 HSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 829
               +                                              +V S S D 
Sbjct: 182 ACLQYRDR-------------------------------------------LVVSGSSDN 198

Query: 830 CVKIWK 835
            +++W 
Sbjct: 199 TIRLWD 204

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 6e-07
 Identities = 17/74 (22%), Positives = 31/74 (41%), Gaps = 11/74 (14%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKS---------TLEEHTQWITDVRFSPSLSR 611
                D K + +G +D K  +W   +              TL EH+  +  ++F     +
Sbjct: 222 RCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEF--Q 279

Query: 612 LATSSADRTVRVWD 625
           + +SS D T+ +WD
Sbjct: 280 IVSSSHDDTILIWD 293

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 82.3 bits (201), Expect = 1e-17
 Identities = 38/286 (13%), Positives = 83/286 (29%), Gaps = 8/286 (2%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLA 613
              + +   S DGK L +   +     W   +        + H   IT ++ +     L 
Sbjct: 12  NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLF 70

Query: 614 TSSADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
           T S D  ++V        D S       S+  + L      +  + +C  +  I      
Sbjct: 71  TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKL 130

Query: 672 NGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN 731
                    S       +  +      +  +   +        +  +   +    +   N
Sbjct: 131 TEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN 190

Query: 732 TSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLE 791
            +       S + V  +S+ +  +    +  +    K     + P    L       ++ 
Sbjct: 191 GAFLVATDQSRK-VIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249

Query: 792 LWNM---TENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
           +WNM   +++  +   AH     +         + SA  D  +K W
Sbjct: 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 295

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 70.0 bits (169), Expect = 2e-13
 Identities = 28/251 (11%), Positives = 67/251 (26%), Gaps = 6/251 (2%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLD 647
           ++      H + IT +  S     L ++ A+  +  WD      +      H+T +  + 
Sbjct: 3   SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISIL 707
                +  L +   +  ++                         L       I       
Sbjct: 63  TTSKGD--LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYK 120

Query: 708 DVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGN 767
            +         +   +   S    ++ +   +V  +  +V             +      
Sbjct: 121 HIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPA 180

Query: 768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAST----VNGMVA 823
           +  S  F      L+       +  +++  N  L  +      ++  A       N  +A
Sbjct: 181 EITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLA 240

Query: 824 SASHDKCVKIW 834
           + S D  V +W
Sbjct: 241 TGSLDNSVIVW 251

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 2/67 (2%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSAD 618
             +SPD   LATG  D   ++W     +    +    H     +     + + + ++  D
Sbjct: 230 VSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQD 289

Query: 619 RTVRVWD 625
             ++ W+
Sbjct: 290 SNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 0.004
 Identities = 9/106 (8%), Positives = 32/106 (30%), Gaps = 3/106 (2%)

Query: 648 FHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISIL 707
                 D        S    + + + +      +    + + P   R+   +++N + + 
Sbjct: 192 AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVW 251

Query: 708 DVET--QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSI 750
           ++        +    H     +     +   + S   D  ++ W++
Sbjct: 252 NMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.5 bits (199), Expect = 3e-17
 Identities = 38/312 (12%), Positives = 83/312 (26%), Gaps = 28/312 (8%)

Query: 552 PAST-SKVESCHFSPDGKLLATGGHDKKAV----LWCTESFTVKSTLEEHTQWITDVRFS 606
           P++  +      + P    +A        V       ++   V       +  +T V+FS
Sbjct: 13  PSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS 72

Query: 607 PSLS--RLATSSADRTVRVWDTENPDYS-------LRTFTGHSTTVMSLDFHP-SKEDLL 656
           P      L +      V VW       S          F   +  +  + +    +   +
Sbjct: 73  PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV 132

Query: 657 CSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRL 716
                ++   + S ++G+  G     + ++            ++        V  Q    
Sbjct: 133 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF 192

Query: 717 KLQ-------GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKF 769
           K            + V  V ++              ++      S     +         
Sbjct: 193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQ 252

Query: 770 HSCVFHPTFPSLLVIGCYE--TLELWNMTENK---TLTLSAHDKLVSSLA-ASTVNGMVA 823
                     S          T+ +W++T +K     TL         +   +T NG + 
Sbjct: 253 GGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII 312

Query: 824 SASHDKCVKIWK 835
           S S D  +  ++
Sbjct: 313 SLSLDGTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (134), Expect = 4e-09
 Identities = 35/291 (12%), Positives = 73/291 (25%), Gaps = 28/291 (9%)

Query: 530 RDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSP--DGKLLATGGHDKKAVLWCTES- 586
           +    R  + G        Q     +S V +  FSP    + L +G    K ++W     
Sbjct: 38  KSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD 97

Query: 587 -------FTVKSTLEEHTQWITDVRFSPSLSRLATSSA--DRTVRVWDTENPDYSLRTFT 637
                    VKS  +     I+D+ +     RL       D        ++ +       
Sbjct: 98  KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG 157

Query: 638 GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC---------AGVFKSGATQMRF 688
                             +   D+ S + Y                     +        
Sbjct: 158 HSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS 217

Query: 689 QPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRV 747
              +  + +    +       E        Q               +  A+V  D  +RV
Sbjct: 218 GEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRV 277

Query: 748 WSIGSGSKGECIHELSCTGNKF--HSCVFHPTFPSLLVIGCYE-TLELWNM 795
           W +   +  +C+ + +    +          T    ++    + TL  + +
Sbjct: 278 WDV---TTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 81.5 bits (199), Expect = 4e-17
 Identities = 36/299 (12%), Positives = 87/299 (29%), Gaps = 21/299 (7%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
            + V +C    +   + TG  DK   ++ + +      L  H   +  ++++     L +
Sbjct: 12  MTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVS 69

Query: 615 SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            S DRTVRVWD +    +      +ST              + +   ++ +  W +   S
Sbjct: 70  GSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKES 129

Query: 675 CAGVFKSG--ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNT 732
                        +   P         +  +++ +   +    + + G  +    V    
Sbjct: 130 SVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA 189

Query: 733 SGEYLASVSDELVRVWSIGSGSKGECI-----------------HELSCTGNKFHSCVFH 775
             + L  +S    R++S     + +                     +             
Sbjct: 190 QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL 249

Query: 776 PTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
                 LV    +         + +   S H   +S++    V+  +  +  +    I+
Sbjct: 250 RLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIY 308

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 1e-08
 Identities = 31/191 (16%), Positives = 68/191 (35%), Gaps = 4/191 (2%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              S  G ++ +G +D   ++W          L  HT  I    +     R  ++S D T
Sbjct: 165 RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTT 224

Query: 621 VRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK 680
           +R+WD EN +         +   +      S + L+ +  + S   + + +         
Sbjct: 225 IRIWDLENGELMYTLQGHTALVGL---LRLSDKFLVSAAADGSIRGWDANDYSRKFSYHH 281

Query: 681 SGATQMRFQPRLGRILAAAIENYISILDVET-QVCRLKLQGHKNQVHSVCWNTSGEYLAS 739
           +  + +        IL +  EN  +I ++ + ++    +    +Q+ SV +       A 
Sbjct: 282 TNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKTLVAAV 341

Query: 740 VSDELVRVWSI 750
             D    +  +
Sbjct: 342 EKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.7 bits (127), Expect = 5e-08
 Identities = 6/90 (6%), Positives = 24/90 (26%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
              ++         H   ++ +        +  S ++    +++  +           + 
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDAD 325

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSIN 671
            + S++F           D  S +     +
Sbjct: 326 QIWSVNFKGKTLVAAVEKDGQSFLEILDFS 355

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.0 bits (125), Expect = 7e-08
 Identities = 10/69 (14%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSS 616
                F     +L +G  + +  ++   S   V + + +    I  V F    + +A   
Sbjct: 285 SAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVE 342

Query: 617 ADRTVRVWD 625
            D    +  
Sbjct: 343 KDGQSFLEI 351

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.8 bits (109), Expect = 7e-06
 Identities = 21/126 (16%), Positives = 42/126 (33%), Gaps = 11/126 (8%)

Query: 715 RLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV 773
           R  L+GH   V + C      Y+ + + D+++RV+        + + +LS       +  
Sbjct: 5   RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDS---INKKFLLQLSGHDGGVWALK 60

Query: 774 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMV----ASASHDK 829
           +      +LV G  +        +    T        +      V         + S D 
Sbjct: 61  YAHG--GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDN 118

Query: 830 CVKIWK 835
            + +WK
Sbjct: 119 TLHVWK 124

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 35/271 (12%), Positives = 72/271 (26%), Gaps = 47/271 (17%)

Query: 565 PDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRV 623
           P    +   G +    L           +      +  VR       +  + S D T+ V
Sbjct: 126 PKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIV 185

Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA 683
           WD           +GH+  + S  +   ++  + +  + + IR W + NG      +   
Sbjct: 186 WDVAQMKCL-YILSGHTDRIYSTIYDHERKRCISASMDTT-IRIWDLENGELMYTLQGHT 243

Query: 684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDE 743
             +       + L +A  +            R     H N      +  S   L S S+ 
Sbjct: 244 ALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGSEN 303

Query: 744 LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL 803
              ++++ S   G+ +H                                          +
Sbjct: 304 QFNIYNLRS---GKLVHA----------------------------------------NI 320

Query: 804 SAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
                 + S+       +VA+   D    + 
Sbjct: 321 LKDADQIWSVNFKG-KTLVAAVEKDGQSFLE 350

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 80.7 bits (197), Expect = 7e-17
 Identities = 36/317 (11%), Positives = 73/317 (23%), Gaps = 29/317 (9%)

Query: 548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE---EHTQWITDVR 604
            Q+  A    +      P   LL     D    ++  +       L     +   +    
Sbjct: 4   VQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCN 63

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE 664
           F  +          +   +        S +  T +   +         +D L +   +  
Sbjct: 64  FIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGL 123

Query: 665 IRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHK-- 722
           I      N     +          + +          + + +    +QV   +L   +  
Sbjct: 124 IEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDD 183

Query: 723 -----------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK------------GEC 758
                                  E  A  S D  V V                       
Sbjct: 184 NGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRL 243

Query: 759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTV 818
             + +      +S  F P    L   G    +  WN+   K +   A     S +  +  
Sbjct: 244 NLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACS 303

Query: 819 NGMVASASHDKCVKIWK 835
           + ++  A+ D   K   
Sbjct: 304 DNILCLATSDDTFKTNA 320

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 13/126 (10%), Positives = 36/126 (28%), Gaps = 17/126 (13%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTES---------------FTVKSTLEEHTQWITDVRF 605
                + +  A    D +  +   +                  +          +  + F
Sbjct: 200 ALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEF 259

Query: 606 SPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           SP    L T+ +D  +  W+ +     ++ F   +     +    S   L  +  +++  
Sbjct: 260 SPRHKFLYTAGSDGIISCWNLQTRK-KIKNFAKFNEDS-VVKIACSDNILCLATSDDTFK 317

Query: 666 RYWSIN 671
              +I+
Sbjct: 318 TNAAID 323

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (86), Expect = 0.004
 Identities = 17/155 (10%), Positives = 41/155 (26%), Gaps = 22/155 (14%)

Query: 617 ADRTVRVWD--TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS 674
            +  V+ +       D      +G    +  +   P +++       +  +     ++  
Sbjct: 168 NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQG 227

Query: 675 CAGVFKSG------------------ATQMRFQPRLGRILAAAIENYISILDVETQVCRL 716
                                        + F PR   +  A  +  IS  +++T+    
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIK 287

Query: 717 KLQGHKNQVHSVCWNTSGEYLAS-VSDELVRVWSI 750
                 N+   V    S   L    SD+  +  + 
Sbjct: 288 NFAKF-NEDSVVKIACSDNILCLATSDDTFKTNAA 321

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 78.8 bits (192), Expect = 2e-16
 Identities = 40/301 (13%), Positives = 86/301 (28%), Gaps = 15/301 (4%)

Query: 548 FQLIPASTS-KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS 606
           F  +P +          +P G  +    +          S T      EH+   T  + S
Sbjct: 9   FPSLPRTARGTAVVLGNTPAGDKIQYC-NGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS 67

Query: 607 PSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHSTTVMSLDFHPSKEDLLCSCDNNSEI 665
           PS    A+      VR+WDT    + L+T     S  V  + +    + +    +     
Sbjct: 68  PSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERF 127

Query: 666 RYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN-- 723
            +  + +   +    +G  +              I +      V                
Sbjct: 128 GHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE 187

Query: 724 ----QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP 779
                           + ++  D  + +++   G+K     + S         VF  T+ 
Sbjct: 188 HTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 247

Query: 780 ---SLLVIGCYE-TLELWNMTENKTL-TLSAHDKL-VSSLAASTVNGMVASASHDKCVKI 833
              + +     + T+++WN+   K   T+    ++    L        + S S +  +  
Sbjct: 248 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307

Query: 834 W 834
            
Sbjct: 308 V 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 60.3 bits (144), Expect = 3e-10
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 1/68 (1%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSPSLSRLATSSADR 619
             +SPDG  +A+   DK   +W   +  V+ T+   T+     +    +   L + SA+ 
Sbjct: 244 LTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANG 303

Query: 620 TVRVWDTE 627
            +   + E
Sbjct: 304 FINFVNPE 311

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.0 bits (182), Expect = 3e-15
 Identities = 34/289 (11%), Positives = 80/289 (27%), Gaps = 56/289 (19%)

Query: 592 TLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
           T+  H + IT +  +P    L + S D  +  W + +          HS  ++SLD   +
Sbjct: 8   TISGHNKGITALTVNP----LISGSYDGRIMEWSSSS------MHQDHSNLIVSLDNSKA 57

Query: 652 KE----------------------------------DLLCSCDNNSEIRYWSINNGSCAG 677
           +E                                    + + D++  I      +   + 
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSV 117

Query: 678 VFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL 737
              S  + +        +              + +V        + +   +  + S  Y+
Sbjct: 118 RLNSPGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYI 177

Query: 738 ASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE--------- 788
           A+       +       + +       T              +       +         
Sbjct: 178 AAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDT 237

Query: 789 TLELWNMTENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK 835
            + ++++     +   L+AH   V++L   T    + S+  D C+K W 
Sbjct: 238 NIFIYSVKRPMKIIKALNAHKDGVNNLLWET-PSTLVSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.5 bits (134), Expect = 4e-09
 Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 2/89 (2%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHST 641
                 +  + +                  +AT S D  + ++  + P   ++    H  
Sbjct: 200 RWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKD 259

Query: 642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSI 670
            V +L +       L S   ++ I+ W++
Sbjct: 260 GVNNLLWET--PSTLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.5 bits (108), Expect = 6e-06
 Identities = 15/128 (11%), Positives = 42/128 (32%), Gaps = 1/128 (0%)

Query: 624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGA 683
                    +      +               L S +  +    +  +  +      +  
Sbjct: 159 TPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEK 218

Query: 684 TQMRFQPRLGRILAAAIENYISILDVETQVCRLK-LQGHKNQVHSVCWNTSGEYLASVSD 742
                +     +   +++  I I  V+  +  +K L  HK+ V+++ W T    ++S +D
Sbjct: 219 GANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGAD 278

Query: 743 ELVRVWSI 750
             ++ W++
Sbjct: 279 ACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 5/44 (11%)

Query: 633 LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           L+T +GH+  + +L  +P     L S   +  I  WS ++    
Sbjct: 6   LKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSMHQD 44

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 73.6 bits (179), Expect = 2e-14
 Identities = 22/318 (6%), Positives = 66/318 (20%), Gaps = 49/318 (15%)

Query: 563 FSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRL-ATSSADRT 620
                + +    +     +    S TV  +              +P        ++    
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGD 63

Query: 621 VRVWDTENPDYS-----LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC 675
           +   D +    +              ++ S    P  +++  + +    +    +     
Sbjct: 64  IYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPR 123

Query: 676 AGVFKSGATQMRFQPRLGR-------------ILAAAIENYISILDVETQVCRLKLQGHK 722
             VF +         R                         I  +DV+T    + L    
Sbjct: 124 LEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRN 183

Query: 723 -------------------------NQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKG 756
                                           +    +  A+           +     G
Sbjct: 184 WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDL---KTG 240

Query: 757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 816
           +   +      + +            + G    L  +++ + K +  +  D     +A  
Sbjct: 241 KTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFD 300

Query: 817 TVNGMVASASHDKCVKIW 834
                +        + ++
Sbjct: 301 KKGDKLYLGGTFNDLAVF 318

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 49.7 bits (117), Expect = 7e-07
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLAT 614
           T    +   SP       G  ++ A  +  +   +             V F     +L  
Sbjct: 251 TELYFTGLRSPKDPNQIYGVLNRLAK-YDLKQRKLIKAAN-LDHTYYCVAFDKKGDKLYL 308

Query: 615 SSADRTVRVWDTE 627
                 + V++ +
Sbjct: 309 GGTFNDLAVFNPD 321

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 42.4 bits (98), Expect = 1e-04
 Identities = 14/121 (11%), Positives = 31/121 (25%), Gaps = 5/121 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTV-KSTLEEHTQWITDVRFSPSLSRLATSSADR 619
             F  D +  AT       +    ++         + T+       SP          + 
Sbjct: 214 ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLN- 272

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            +  +D +           H  T   + F     D L      +++  ++ +        
Sbjct: 273 RLAKYDLKQRKLIKAANLDH--TYYCVAFDKK-GDKLYLGGTFNDLAVFNPDTLEKVKNI 329

Query: 680 K 680
           K
Sbjct: 330 K 330

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 70.3 bits (170), Expect = 2e-13
 Identities = 24/297 (8%), Positives = 60/297 (20%), Gaps = 28/297 (9%)

Query: 563 FSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--R 619
           FSP DG L+A     +  +   + ++ +K         I  VR                 
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYVLKVP---EPLRIRYVRRGGDTKVAFIHGTREGD 66

Query: 620 TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF 679
            + ++D              +   M +D +     +         +   +          
Sbjct: 67  FLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSR 126

Query: 680 KSGATQMRFQPRLGRILAAAIENYISILDVETQVCR---------LKLQGHKNQVHSVCW 730
           ++  T          I       +        Q                   +  ++  +
Sbjct: 127 EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAF 186

Query: 731 NTSGEYLASVS-DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLVIG 785
           +   + L  +S   L         +           +       +     P   +     
Sbjct: 187 DADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGE 246

Query: 786 CYETLELWNMTENKT--------LTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
                     +            + L +   + S             A     +  +
Sbjct: 247 YDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKY 303

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 64.9 bits (156), Expect = 1e-11
 Identities = 23/305 (7%), Positives = 55/305 (18%), Gaps = 26/305 (8%)

Query: 553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL 612
               ++       D K+    G  +   L   +  T K+   E               + 
Sbjct: 40  PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKF 99

Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHP-----------SKEDLLCSCDN 661
           A  + DR   +                   +                     +       
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 662 NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCR------ 715
              +          A    S      F      +   +  +     D             
Sbjct: 160 AIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSK 219

Query: 716 -LKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH---- 770
              +       +            +   +L  ++   S    +          +      
Sbjct: 220 PFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIY 279

Query: 771 -SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK 829
              V                L  +++   K   +  +   ++ L  S     V     D 
Sbjct: 280 SVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNN---LTDLRLSADRKTVMVRKDDG 336

Query: 830 CVKIW 834
            +  +
Sbjct: 337 KIYTF 341

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 61.8 bits (148), Expect = 1e-10
 Identities = 9/87 (10%), Positives = 22/87 (25%), Gaps = 4/87 (4%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
            +     + +S                         + +  +       + E    +TD+
Sbjct: 265 DYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVK----TRKVTEVKNNLTDL 320

Query: 604 RFSPSLSRLATSSADRTVRVWDTENPD 630
           R S     +     D  +  +  E P+
Sbjct: 321 RLSADRKTVMVRKDDGKIYTFPLEKPE 347

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 19/250 (7%), Positives = 54/250 (21%), Gaps = 21/250 (8%)

Query: 603 VRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLL-CSCDN 661
             FSP    L    +     + D      +          +  +      +         
Sbjct: 8   EDFSPLDGDLIAFVSRGQAFIQDVSG---TYVLKVPEPLRIRYVRRGGDTKVAFIHGTRE 64

Query: 662 NSEIRYWSINNGSCAGVFKSGA--TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ 719
              +  +    G      ++      M         + A     I  +D+ET    +  +
Sbjct: 65  GDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER 124

Query: 720 GHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGS-------KGECIHELSCTGNKFHSC 772
             +  +     + +  ++A                       +G  I   +   +  ++ 
Sbjct: 125 SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAP 184

Query: 773 VFHPTFPSLLVIGCYETLELWN--------MTENKTLTLSAHDKLVSSLAASTVNGMVAS 824
            F     +L  +         +           +K   +       +       +    +
Sbjct: 185 AFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEA 244

Query: 825 ASHDKCVKIW 834
             +D      
Sbjct: 245 GEYDLNDMYK 254

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 68.3 bits (165), Expect = 9e-13
 Identities = 28/258 (10%), Positives = 69/258 (26%), Gaps = 63/258 (24%)

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD-----------YSLRTF 636
              +  + H   I  V    S     + S D  ++VWD +  D           +  ++ 
Sbjct: 5   ATANAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62

Query: 637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRIL 696
             H   + +++    +  L+ +   + ++ ++ I               +          
Sbjct: 63  LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDL---------- 112

Query: 697 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKG 756
                              L     K+   ++ W  S + L                   
Sbjct: 113 -------------------LDSDMKKHSFWALKWGASNDRL------------------- 134

Query: 757 ECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAAS 816
              H L  T  K  + ++     +                +    +     +  +S+  S
Sbjct: 135 -LSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS 193

Query: 817 TVNGMVASASHDKCVKIW 834
              G++A+  ++  V+I 
Sbjct: 194 E-RGLIATGFNNGTVQIS 210

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (158), Expect = 9e-12
 Identities = 35/313 (11%), Positives = 79/313 (25%), Gaps = 43/313 (13%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPS 608
            + + S           +   D    +W  +    ++  ++      H   +  V    +
Sbjct: 14  DADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQA 71

Query: 609 LSR-------LATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN 661
           + R       +AT+S    +  +     D   +        ++  D        L    +
Sbjct: 72  IERDAFELCLVATTSFSGDLLFYRITRED-ETKKVIFEKLDLLDSDMKKHSFWALKWGAS 130

Query: 662 NSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGH 721
           N  +    +           G T +           +   N+   L+   Q         
Sbjct: 131 NDRLLSHRLVATDV-----KGTTYIWKFHPFADESNSLTLNWSPTLE--LQGTVESPMTP 183

Query: 722 KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH----------- 770
                SV  +  G      ++  V++  + +              N  +           
Sbjct: 184 SQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQG 243

Query: 771 ---------SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGM 821
                    +     T           +L +   +   +L   AH   V SL+ +     
Sbjct: 244 SLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGET 303

Query: 822 VASASHDKCVKIW 834
           + SA  D  ++ W
Sbjct: 304 LCSAGWDGKLRFW 316

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.4 bits (121), Expect = 2e-07
 Identities = 30/232 (12%), Positives = 65/232 (28%), Gaps = 38/232 (16%)

Query: 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWC------TESFTVKSTL 593
                    +     +    S   S  G L+ATG ++    +          +F  + ++
Sbjct: 169 PTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSM 227

Query: 594 EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKE 653
             ++  I  V+FSP  S LA +    +         ++                      
Sbjct: 228 INNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF---------------------- 265

Query: 654 DLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQV 713
                   +  +   S           S    + F      + +A  +  +   DV+T+ 
Sbjct: 266 ---GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE 322

Query: 714 CRLKLQGHKNQV----HSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE 761
               L  H + +      +  +  G+ LA     +  V  +  G +     +
Sbjct: 323 RITTLNMHCDDIEIEEDILAVDEHGDSLAEPG--VFDVKFLKKGWRSGMGAD 372

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 21/118 (17%)

Query: 555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWI----TDVRFSPSLS 610
           +S V S  F+  G+ L + G D K   W  ++    +TL  H   I      +       
Sbjct: 289 SSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGD 348

Query: 611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW 668
            LA         V+D +      R+  G              E L C C + S IR++
Sbjct: 349 SLAEPG------VFDVKFLKKGWRSGMGADLN----------ESLCCVCLDRS-IRWF 389

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 63.3 bits (152), Expect = 3e-11
 Identities = 31/291 (10%), Positives = 75/291 (25%), Gaps = 20/291 (6%)

Query: 551 IPASTSKVESCHFSPDGK-LLATGGHDKKAVLWCTESFTVKSTLEEHTQWI-----TDVR 604
           I  +         +P G+   AT    +  V     +      ++  T            
Sbjct: 29  IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAA 88

Query: 605 FSPSLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNS 663
            SP    LA   +   + +   E     +  +     +   + +       L  + D + 
Sbjct: 89  LSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGS- 147

Query: 664 EIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKN 723
             + + +         ++G             + +      +  DV     + +  G   
Sbjct: 148 --KLYGLGRDLHVMDPEAGTLVEDKP------IQSWEAETYAQPDVLAVWNQHESSGVMA 199

Query: 724 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLV 783
                          +     +    + +G     + E+      + S   +P       
Sbjct: 200 TPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMREVRIMDVFYFSTAVNP--AKTRA 255

Query: 784 IGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
            G Y  LE +++ +N ++          S+  ST    V        +  +
Sbjct: 256 FGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAY 306

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.3 bits (108), Expect = 8e-06
 Identities = 8/68 (11%), Positives = 14/68 (20%), Gaps = 3/68 (4%)

Query: 561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              +P                +  E       +         V  S   S +    A   
Sbjct: 246 TAVNPAKTRAFG--AYNVLESFDLEKNASIKRVP-LPHSYYSVNVSTDGSTVWLGGALGD 302

Query: 621 VRVWDTEN 628
           +  +D E 
Sbjct: 303 LAAYDAET 310

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.5 bits (98), Expect = 1e-04
 Identities = 22/225 (9%), Positives = 53/225 (23%), Gaps = 6/225 (2%)

Query: 612 LATSSADRTVRVWDTENPDYSLRTFTGHST--TVMSLDFHPSKEDLLCSCDNNSEIRYWS 669
           +   +    + V DTE      +  T      T M     P       + + +  +    
Sbjct: 4   ILAPARPDKLVVIDTEKMAV-DKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 670 INNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVC 729
           +  G   G       + R +   G   AA   +  ++   E+ V                
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFG---AALSPDGKTLAIYESPVRLELTHFEVQPTRVAL 119

Query: 730 WNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYET 789
           ++          +   ++  +     G  ++ L    +              +     ET
Sbjct: 120 YDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAET 179

Query: 790 LELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
               ++        S+         A          ++   +   
Sbjct: 180 YAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.2 bits (87), Expect = 0.004
 Identities = 11/68 (16%), Positives = 21/68 (30%), Gaps = 1/68 (1%)

Query: 544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
                + +P   S   S + S DG  +  GG       +  E+   K  ++        +
Sbjct: 269 KNASIKRVPLPHS-YYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

Query: 604 RFSPSLSR 611
                 +R
Sbjct: 328 ASVRLFTR 335

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 60.6 bits (146), Expect = 3e-10
 Identities = 32/298 (10%), Positives = 79/298 (26%), Gaps = 29/298 (9%)

Query: 563 FSPDGK--LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRT 620
              D +     T     +  L    ++ +K+ L+     +   R S S   L     D  
Sbjct: 26  NDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGK 84

Query: 621 VRVWDTENPD----YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA 676
           V + D    +      ++  +   +   S       +  +       +            
Sbjct: 85  VNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPK 144

Query: 677 GVFKSGATQMRFQ-----PRLGRILAAAI----------ENYISILDVET-QVCRLKLQG 720
            +  +       Q     PR+  ILA+               I ++D       +     
Sbjct: 145 KIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEIS 204

Query: 721 HKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS 780
            +  +H    + S  Y  + ++   ++  I   +K   +  +  TG +         F  
Sbjct: 205 AERFLHDGGLDGSHRYFITAANARNKLVVI--DTKEGKLVAIEDTGGQTPHPGRGANFVH 262

Query: 781 LLVIGCYETLELWN----MTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIW 834
                 + T  + +    +          +   +     +   G +   +H     ++
Sbjct: 263 PTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLY 320

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (131), Expect = 2e-08
 Identities = 37/304 (12%), Positives = 76/304 (25%), Gaps = 39/304 (12%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D K  +         +  E     E     T           
Sbjct: 64  VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYA 123

Query: 613 -ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS-----------KEDLLCSCD 660
            A +       + D E  +   +  +    T    ++HP            + + + +  
Sbjct: 124 IAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK 182

Query: 661 NNSEIRYWSINNGSCAGVFKSGATQM----RFQPRLGRILAAAIENYISILDVETQVCRL 716
              +I      + +     +  A +              + AA      ++    +   +
Sbjct: 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLV 242

Query: 717 KLQGHKNQVHSVCWNT------SGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFH 770
            ++    Q               G   A+       V  IG+  +G   +       K  
Sbjct: 243 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDN-----AWKIL 297

Query: 771 SCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKC 830
                    SL +     +  L+        TL+   ++  S+A   +   +     D  
Sbjct: 298 DSFPALGGGSLFIKTHPNSQYLYVDA-----TLNPEAEISGSVAVFDIK-AMTGDGSDPE 351

Query: 831 VKIW 834
            K  
Sbjct: 352 FKTL 355

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 17/117 (14%), Positives = 35/117 (29%), Gaps = 4/117 (3%)

Query: 537 AEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH 596
           AE   G+    +Q +    +                    +  V+   ++    +  E  
Sbjct: 240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE-M 298

Query: 597 TQWITDVRFSPSLSRL--ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              I  +  S     L  A S+ D+T+ + D E+ +  LR+          +     
Sbjct: 299 GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEE-LRSVNQLGHGPQVITTADM 354

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.8 bits (130), Expect = 2e-08
 Identities = 21/299 (7%), Positives = 68/299 (22%), Gaps = 33/299 (11%)

Query: 554 STSKVESCHFSPDGKLLAT----------GGHDKKAVLWCTESFTVKSTLEEHTQWITDV 603
               + +   + DG  +A           G       ++   +    + +E        V
Sbjct: 45  DGGFLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLV 104

Query: 604 RFSPSLSRLATSSADRTVRVWDTE------NPDYSLRTFTGHSTTVMSLDFHPSKEDLLC 657
              P +   + +   +T+  +           D   + F             P+  D   
Sbjct: 105 GTYPWM--TSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFF 162

Query: 658 SCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLK 717
               +  +   +        +  +       +  +     +     +       ++ ++ 
Sbjct: 163 MHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222

Query: 718 LQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT 777
           L     +        +                   G +     +++         +    
Sbjct: 223 LSSGDAKFLPAVEALT-------------EAERADGWRPGGWQQVAYHRALDRIYLLVDQ 269

Query: 778 FPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASASHDKCVKIW 834
                       + + +    + L        + S+  S      + A ++ DK + I 
Sbjct: 270 RDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIH 328

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 47.2 bits (110), Expect = 5e-06
 Identities = 22/267 (8%), Positives = 68/267 (25%), Gaps = 6/267 (2%)

Query: 572 TGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPD 630
                    +    S  V +T+   +        SP  +++   ++    V + DT   +
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNN 65

Query: 631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQP 690
                  G S   +++     +  +     +   +   + N  +           +   P
Sbjct: 66  VIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSP 125

Query: 691 RLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSI 750
              ++      +    +        +           +     G  +   + + + +  I
Sbjct: 126 DGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVI 185

Query: 751 GSGSKGECIHELSCTG-NKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKL 809
            + +             +               V   + T+ + +   NK          
Sbjct: 186 DTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPD 245

Query: 810 VSSLAASTVNG--MVASASHDKCVKIW 834
            + +A +  +G  +  + S    V + 
Sbjct: 246 PAGIAVTP-DGKKVYVALSFCNTVSVI 271

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 582 WCTESFTVKSTLEEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTEN 628
             T +  + + +         +  +P   ++    S   TV V DT  
Sbjct: 229 IDTGTNKITARIPVGP-DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.5 bits (109), Expect = 9e-06
 Identities = 34/330 (10%), Positives = 75/330 (22%), Gaps = 50/330 (15%)

Query: 552 PASTSKVESCHFSPDGK-----LLATGGHDKKAVLWCTESFTVKSTLEE----HTQWITD 602
            AS             +     L A      +  + C                       
Sbjct: 16  AASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHS 75

Query: 603 VRF----SPSLSRLATSSADRTVRVWDTEN--PDYSLRTFTGHSTTVM----SLDFHPSK 652
                  S S +R A       V V+D     P   +        +V      +    S 
Sbjct: 76  GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASS 135

Query: 653 EDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQ 712
             LL     +S     S+   S   + KS +               +    ++  D+   
Sbjct: 136 ACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAA 195

Query: 713 VCRL------KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTG 766
                               +   N  G  + +V+   +    I +         +    
Sbjct: 196 PAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASS-ILQGDIPAAG-ATMKAAIDGNE 253

Query: 767 NKFHSCVFHPTFPSLLVIGC-------------------YETLELWNMTENKTLTLSAHD 807
           +   +  F      ++                        E       +  +T    ++ 
Sbjct: 254 SGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG 313

Query: 808 KLVSSLAASTVNG---MVASASHDKCVKIW 834
               ++ A+  +G     A+++  + + I+
Sbjct: 314 HDSDAIIAAQ-DGASDNYANSAGTEVLDIY 342

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.9 bits (105), Expect = 3e-05
 Identities = 12/99 (12%), Positives = 22/99 (22%), Gaps = 5/99 (5%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRL 612
           V     S  G+ L   G D +  +    +       E     E     +           
Sbjct: 64  VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYT 123

Query: 613 ATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPS 651
              +                 +  +    TV +  +HP 
Sbjct: 124 IAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPE 162

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.5 bits (96), Expect = 3e-04
 Identities = 29/277 (10%), Positives = 74/277 (26%), Gaps = 38/277 (13%)

Query: 540 GKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLW------------CTESF 587
            +     E ++   + S   S     + +    G +                    T   
Sbjct: 93  KEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM 152

Query: 588 TVKSTLEEHTQWITDVRFSPSLSRLATSSAD-RTVRVWDTENPDYSLRTFTGHSTTVMSL 646
           TV +        +  +  S        +  +   V + + ++ D    T  G +  +   
Sbjct: 153 TVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADG 212

Query: 647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMR------FQPRLGRILAAAI 700
            +  S    + + +N++++      +   + +   G T           P+ G + + + 
Sbjct: 213 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH 272

Query: 701 ENYISILDVETQVCRLK---------LQGHKNQVHSVCWNTSGEYLASVS--------DE 743
               SI  + T               LQG       +  +    +L   +         +
Sbjct: 273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQ 332

Query: 744 LVRVWSIGSGSKGECI--HELSCTGNKFHSCVFHPTF 778
            V V+ + +      +          +    V  P +
Sbjct: 333 SVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEY 369

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 39.2 bits (90), Expect = 0.002
 Identities = 18/130 (13%), Positives = 42/130 (32%), Gaps = 22/130 (16%)

Query: 558 VESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA---- 613
           V S     DG +   G   K        ++   + L+        ++  P  S L     
Sbjct: 267 VWSTSHLGDGSISLIGTDPKN---HPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTT 323

Query: 614 ---TSSADRTVRVWDTEN--------PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSC--- 659
               +   ++V V+D +N        P          +  V+  +++   +++  S    
Sbjct: 324 FNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNG 383

Query: 660 -DNNSEIRYW 668
            +++S +   
Sbjct: 384 KNDSSALVVV 393

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 11/67 (16%), Positives = 18/67 (26%), Gaps = 1/67 (1%)

Query: 614 TSSADRTVRVWDT-ENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINN 672
            S   + + VW+       +L         V  +   P K  L         +  + I  
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 673 GSCAGVF 679
              A  F
Sbjct: 69  DDGALTF 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	835
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.98
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.97
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.97
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.96
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.92
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.92
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.91
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.85
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.84
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.83
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.74
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.67
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.5
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.47
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.34
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.29
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.28
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.19
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.17
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.1
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.03
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.02
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.02
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.01
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.94
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.86
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.86
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.82
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.8
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.74
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.71
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.65
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.46
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.34
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.24
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.24
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	98.17
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	98.14
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.99
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.89
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.87
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.85
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.71
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.65
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.64
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.64
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.64
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.6
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.54
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.33
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.32
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.27
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.26
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.08
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.06
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.87
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	96.84
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	96.33
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	96.33
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.65
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	95.32
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	95.09
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	94.41
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	94.12
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	93.84
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	91.98
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	91.66
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	91.64
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.39
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	90.16
d1jtdb_	273	beta-lactamase inhibitor protein-II, BLIP-II {Stre	89.87
d1wp5a_	323	Topoisomerase IV subunit A, ParC, C-terminal domai	84.9

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.1e-38  Score=335.06  Aligned_cols=283  Identities=25%  Similarity=0.477  Sum_probs=262.2

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecC
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      ..+|+||.+.|++|+|+|++++||+|+.||+|+|||+.+++.+.++.+|...|.+++|++++.++++++.++.+.+|+..
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQ   89 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETT
T ss_pred             cEEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccccccccccccc
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcE
Q 003271          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYI  704 (835)
Q Consensus       628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I  704 (835)
                      .... ...+..|...+.++.|++++. .+++++.|+.+++||+++++.+..+..   .+.+++|++++..+++++.|+.|
T Consensus        90 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v  167 (317)
T d1vyhc1          90 GFEC-IRTMHGHDHNVSSVSIMPNGD-HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTV  167 (317)
T ss_dssp             SSCE-EECCCCCSSCEEEEEECSSSS-EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccc-ccccccccccceeeeccCCCc-eEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeE
Confidence            7664 677788999999999999976 566889999999999999988877764   47889999999999999999999


Q ss_pred             EEEECCCCeEEEEEcCCCCCeEEEEEcCCC--------------------CEEEEEe-CCeEEEEEcCCCCCcceEEEee
Q 003271          705 SILDVETQVCRLKLQGHKNQVHSVCWNTSG--------------------EYLASVS-DELVRVWSIGSGSKGECIHELS  763 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~~h~~~I~sl~fspdg--------------------~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~  763 (835)
                      ++|++.++..+..+.+|...+.++.|++++                    .++++++ |+.|++||++++   .++..+.
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~---~~~~~~~  244 (317)
T d1vyhc1         168 RVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLV  244 (317)
T ss_dssp             EEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTT---EEEEEEE
T ss_pred             EEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCC---cEEEEEe
Confidence            999999999999999999999999998753                    4677888 999999999988   7888999


Q ss_pred             cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          764 CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       764 ~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|...|.+++|+|++++|++++.||.|+|||+.+++++ .+.+|...|++++|+|++++|++|+.||+|+|||
T Consensus       245 ~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         245 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999998876 7789999999999999999999999999999998

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.6e-38  Score=339.28  Aligned_cols=284  Identities=17%  Similarity=0.241  Sum_probs=251.6

Q ss_pred             eeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe-----EEEEeccCCCCeEEEEECCCCCEEEEEECC
Q 003271          544 TFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSSAD  618 (835)
Q Consensus       544 ~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~-----~i~~l~~h~~~V~sv~fspdg~~Latgs~D  618 (835)
                      ..+.+..+ .|...|+|++|+|+|++||+|+ ||.|+|||+.+..     ......+|.+.|.+++|+|++++|++|+.|
T Consensus        41 ~~~~~~~~-~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~d  118 (337)
T d1gxra_          41 HARQINTL-NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEA  118 (337)
T ss_dssp             EEEEEEEE-CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESS
T ss_pred             CceEEEEC-CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecc
Confidence            34556666 8999999999999999999987 8999999987543     233456799999999999999999999999


Q ss_pred             CeEEEEecCCCCc-eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCE
Q 003271          619 RTVRVWDTENPDY-SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGR  694 (835)
Q Consensus       619 g~I~IWDl~t~~~-~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~  694 (835)
                      |.|++||+..... ....+..|...|.+++|+|++. ++++++.|+.|++||+.++++.....   ..+.+++|++++..
T Consensus       119 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~  197 (337)
T d1gxra_         119 STLSIWDLAAPTPRIKAELTSSAPACYALAISPDSK-VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTK  197 (337)
T ss_dssp             SEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSE
T ss_pred             cccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccc
Confidence            9999999986543 3566788999999999999965 67789999999999999998877655   45889999999999


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEE
Q 003271          695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCV  773 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~  773 (835)
                      +++++.|+.|++||+++++.+..+. |...|.+++|+|++.+|++++ |+.|++||+++.   .. .....|...|.+++
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~---~~-~~~~~~~~~i~~v~  272 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP---DK-YQLHLHESCVLSLK  272 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSS---CE-EEECCCSSCEEEEE
T ss_pred             cccccccccccccccccceeecccc-cccceEEEEEcccccccceecccccccccccccc---cc-ccccccccccceEE
Confidence            9999999999999999999887775 889999999999999999988 999999999886   33 35567889999999


Q ss_pred             EeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          774 FHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       774 fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |+|++++|++++.|+.|++||+.+++.+....|...|.+++|+|++++|++|+.||+|+|||
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWd  334 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE  334 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            99999999999999999999999999997788999999999999999999999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.6e-36  Score=323.86  Aligned_cols=286  Identities=19%  Similarity=0.366  Sum_probs=253.6

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      +...++|+||.+.|+||+|+|++++||+|+.||+|+|||+.+++.+..+..|...|.+++|+|++.+|++|+.|+.|++|
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecc
Confidence            45677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCc---eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEE
Q 003271          625 DTENPDY---SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAA  698 (835)
Q Consensus       625 Dl~t~~~---~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~  698 (835)
                      +......   ....+.+|...+........  ..++.+..+..+..|+...........   ..+....+.+....++++
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         125 NLKTREGNVRVSRELAGHTGYLSCCRFLDD--NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             ESSSSCSCCCEEEEECCCSSCEEEEEEEET--TEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             cccccccccccceecccccccccccccccc--cccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            9875442   34566777777776666554  356677889999999998776655443   447788899999999999


Q ss_pred             EcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe--ecCCCceEEEEEe
Q 003271          699 AIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL--SCTGNKFHSCVFH  775 (835)
Q Consensus       699 s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l--~~~~~~V~sv~fs  775 (835)
                      +.|+.|++||+++++++..+.+|...|++++|+|++.+|++++ |+.|++||++..   ..+..+  ..+...|.+++|+
T Consensus       203 ~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~---~~~~~~~~~~~~~~i~~~~~s  279 (340)
T d1tbga_         203 ACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRAD---QELMTYSHDNIICGITSVSFS  279 (340)
T ss_dssp             ETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEEEECCTTCCSCEEEEEEC
T ss_pred             ecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeeccc---ccccccccccccCceEEEEEC
Confidence            9999999999999999999999999999999999999999999 999999999886   444443  4556779999999


Q ss_pred             CCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          776 PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       776 pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |++++|++++.|+.|+|||+.+++++ .+.+|.+.|++++|+|++.+|+||+.||.|+|||
T Consensus       280 ~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         280 KSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             SSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence            99999999999999999999999888 7789999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.7e-36  Score=332.37  Aligned_cols=281  Identities=28%  Similarity=0.435  Sum_probs=241.4

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec------------------cCCCCeEEEEECCCCCEEE
Q 003271          552 PASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE------------------EHTQWITDVRFSPSLSRLA  613 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~------------------~h~~~V~sv~fspdg~~La  613 (835)
                      .+|++.|+||+|+|||++||+|+ |++|+|||+.+++.+..+.                  .|...|++++|+|++++|+
T Consensus        59 ~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~  137 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLA  137 (388)
T ss_dssp             EECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcce
Confidence            37999999999999999999986 8999999999988876664                  3667799999999999999


Q ss_pred             EEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEec-
Q 003271          614 TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQP-  690 (835)
Q Consensus       614 tgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp-  690 (835)
                      +|+.||.|++||...++. +..+.+|...|.+++|++++. .+++++.++.|++||+.+..........  ...+.+.+ 
T Consensus       138 s~~~dg~v~i~~~~~~~~-~~~~~~h~~~v~~~~~~~~~~-~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  215 (388)
T d1erja_         138 TGAEDRLIRIWDIENRKI-VMILQGHEQDIYSLDYFPSGD-KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPG  215 (388)
T ss_dssp             EEETTSCEEEEETTTTEE-EEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECST
T ss_pred             eccccccccccccccccc-ccccccccccccccccccccc-cccccccceeeeeeeccccccccccccccccccccccCC
Confidence            999999999999998764 777888999999999999866 6668889999999999998877665533  44455554 


Q ss_pred             CCCEEEEEEcCCcEEEEECCCCeEEEEE-------cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC-------
Q 003271          691 RLGRILAAAIENYISILDVETQVCRLKL-------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK-------  755 (835)
Q Consensus       691 ~~~~ll~~s~dg~I~IwDl~t~~~i~~l-------~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~-------  755 (835)
                      ++..|++++.|+.|++||++++.....+       .+|...|.+++|+|++.+|++++ |+.|++||+.+...       
T Consensus       216 ~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  295 (388)
T d1erja_         216 DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTP  295 (388)
T ss_dssp             TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC------------
T ss_pred             CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccc
Confidence            6788999999999999999998776654       35788999999999999999999 99999999986532       


Q ss_pred             --cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEE------eCCCCEEEEEE
Q 003271          756 --GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA------STVNGMVASAS  826 (835)
Q Consensus       756 --~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~------spdg~~LaSgs  826 (835)
                        ..+......|...|.+++|+|++++|++++.||.|++||+.+++++ .+.+|.+.|.++++      +|++.+||||+
T Consensus       296 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s  375 (388)
T d1erja_         296 NSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGS  375 (388)
T ss_dssp             ---CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEE
T ss_pred             cccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEe
Confidence              2345556678899999999999999999999999999999999987 78899999999975      56889999999


Q ss_pred             CCCcEEEeC
Q 003271          827 HDKCVKIWK  835 (835)
Q Consensus       827 ~DG~V~IWd  835 (835)
                      .||+|+|||
T Consensus       376 ~Dg~I~iW~  384 (388)
T d1erja_         376 GDCKARIWK  384 (388)
T ss_dssp             TTSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=3.8e-35  Score=316.46  Aligned_cols=279  Identities=17%  Similarity=0.223  Sum_probs=237.4

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS  632 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~  632 (835)
                      .+.+.+.+++++|+|+.||.+. ++.|.+||+++......+.+|...|++++|+|++++|++|+.||+|+|||+.+....
T Consensus        15 ~~r~~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~   93 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI   93 (311)
T ss_dssp             CCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCC
T ss_pred             CCCCCeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccc
Confidence            3455677899999999999886 678999999999999999999999999999999999999999999999999987653


Q ss_pred             e-EEeecCCCCeEEEEEcCCCCcEEEEEe-CCCcEEEEECCCCeeeeEee---cCceEEEEecCCCE-EEEEEcCCcEEE
Q 003271          633 L-RTFTGHSTTVMSLDFHPSKEDLLCSCD-NNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGR-ILAAAIENYISI  706 (835)
Q Consensus       633 ~-~~~~~h~~~V~sl~fsp~g~~ll~sgs-~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~-ll~~s~dg~I~I  706 (835)
                      . ..+..|...|.+++|+|++..+++++. .+..+++|++++++....+.   ..+.+++|+|++.+ +++++.|+.|++
T Consensus        94 ~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i  173 (311)
T d1nr0a1          94 LKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAI  173 (311)
T ss_dssp             EEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEE
T ss_pred             cccccccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            3 557889999999999999875554332 35679999999988877665   44889999999885 677889999999


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe-------ecCCCceEEEEEeCCC
Q 003271          707 LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-------SCTGNKFHSCVFHPTF  778 (835)
Q Consensus       707 wDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l-------~~~~~~V~sv~fspdg  778 (835)
                      ||+++++....+..|...|.+++|+|++++|++++ |+.|++||+.++   ..+..+       .+|...|.+++|+|++
T Consensus       174 ~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~---~~~~~~~~~~~~~~~h~~~V~~~~~s~~~  250 (311)
T d1nr0a1         174 FEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDG---TKTGVFEDDSLKNVAHSGSVFGLTWSPDG  250 (311)
T ss_dssp             EETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC---CEEEECBCTTSSSCSSSSCEEEEEECTTS
T ss_pred             ccccccccccccccccccccccccCccccccccccccccccccccccc---cccccccccccccccccccccccccCCCC
Confidence            99999999999999999999999999999999998 999999999887   344443       3467889999999999


Q ss_pred             CEEEEEEcCCeEEEEEcCCCcEE-EeccCCC-CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          779 PSLLVIGCYETLELWNMTENKTL-TLSAHDK-LVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       779 ~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~-~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++|++++.|+.|+|||+.+++++ .+..|.. ....+.+.+++..|++++.||.|++||
T Consensus       251 ~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd  309 (311)
T d1nr0a1         251 TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVN  309 (311)
T ss_dssp             SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEE
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEe
Confidence            99999999999999999999987 4444432 233344445567799999999999997

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=2.9e-35  Score=311.68  Aligned_cols=284  Identities=15%  Similarity=0.165  Sum_probs=233.5

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      ..+++.||.+.|+|++|+||+++||+|+.||+|+|||+++++.+..+. .|...|++++|+|++. +++++.|+.|++|+
T Consensus         4 ~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~   82 (299)
T d1nr0a2           4 IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEEC
T ss_pred             cceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEec
Confidence            467889999999999999999999999999999999999999988874 6899999999999986 55667899999999


Q ss_pred             cCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCCc
Q 003271          626 TENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIENY  703 (835)
Q Consensus       626 l~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg~  703 (835)
                      +.....  .......+...+.+++|++++..++ ++ .++.+++|+..... .......+.+++|+|++..+++++.|+.
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~-~~~~i~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~  159 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AA-CYKHIAIYSHGKLT-EVPISYNSSCVALSNDKQFVAVGGQDSK  159 (299)
T ss_dssp             SSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EE-ESSEEEEEETTEEE-EEECSSCEEEEEECTTSCEEEEEETTSE
T ss_pred             cCCcccccccccccccccccccccccccccccc-cc-cccccccccccccc-cccccccccccccccccccccccccccc
Confidence            875432  1233455778899999999987444 33 36789999965322 1223345788999999999999999999


Q ss_pred             EEEEECCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEE
Q 003271          704 ISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSL  781 (835)
Q Consensus       704 I~IwDl~t~~~i~-~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L  781 (835)
                      |++||+++++... ....|...|.+++|+|++.+|++++ |+.|++||+.++........+..|...|.+++|+|++.+|
T Consensus       160 i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l  239 (299)
T d1nr0a2         160 VHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRL  239 (299)
T ss_dssp             EEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccce
Confidence            9999999876543 3446899999999999999999998 9999999998875444555677789999999999999999


Q ss_pred             EEEEcCCeEEEEEcCCCcEE---EeccC-CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          782 LVIGCYETLELWNMTENKTL---TLSAH-DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       782 ~sgs~dg~I~IwDl~~~~~~---~l~~h-~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++++.|+.|+|||++++...   ....| ...|.++.| +++.+|++|+.||.|+|||
T Consensus       240 ~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         240 ATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             EEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEE
T ss_pred             EEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCCCEEEEEeCCCEEEEEe
Confidence            99999999999999876532   33344 455666655 5678999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=5.6e-34  Score=313.73  Aligned_cols=276  Identities=16%  Similarity=0.202  Sum_probs=230.5

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc-
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY-  631 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~-  631 (835)
                      .++|+|++|+|||++||+|+.|+.|+|||+.+++  .+..+.+|.+.|.+|+|+|++++|++|+.|++|+|||+.+... 
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~   86 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   86 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccc
Confidence            4679999999999999999999999999998765  6678899999999999999999999999999999999987653 


Q ss_pred             eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE-------eecCceEEEEecCCCEEEEEEcCCcE
Q 003271          632 SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV-------FKSGATQMRFQPRLGRILAAAIENYI  704 (835)
Q Consensus       632 ~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~-------~~~~i~~l~fsp~~~~ll~~s~dg~I  704 (835)
                      ....+.+|...|.+++|+|+++ .+++++.|+.|++|++........       +...+.+++|+|++.+|++++.|+.|
T Consensus        87 ~~~~~~~~~~~v~~i~~~p~~~-~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v  165 (371)
T d1k8kc_          87 PTLVILRINRAARCVRWAPNEK-KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKC  165 (371)
T ss_dssp             EEEECCCCSSCEEEEEECTTSS-EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             cccccccccccccccccccccc-cceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEE
Confidence            2345677899999999999976 667889999999999876543222       23458899999999999999999999


Q ss_pred             EEEECCC------------------CeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC
Q 003271          705 SILDVET------------------QVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT  765 (835)
Q Consensus       705 ~IwDl~t------------------~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~  765 (835)
                      ++||+..                  +..+.....|...|.+++|+|++.+|++++ |+.|++||+.++   ..+..+..|
T Consensus       166 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~  242 (371)
T d1k8kc_         166 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKK---MAVATLASE  242 (371)
T ss_dssp             EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGT---TEEEEEECS
T ss_pred             EEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeecccccccccccCCcceEEeeecc---cceeeeecc
Confidence            9999864                  245667778999999999999999999999 999999999887   788889999


Q ss_pred             CCceEEEEEeCCCCEEEEEEcCCeEEEEE--cCCCcEE----------------------------------------Ee
Q 003271          766 GNKFHSCVFHPTFPSLLVIGCYETLELWN--MTENKTL----------------------------------------TL  803 (835)
Q Consensus       766 ~~~V~sv~fspdg~~L~sgs~dg~I~IwD--l~~~~~~----------------------------------------~l  803 (835)
                      ..+|.+++|+|++.+|+ ++.|+.+++|+  ...+...                                        ..
T Consensus       243 ~~~v~s~~fs~d~~~la-~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (371)
T d1k8kc_         243 TLPLLAVTFITESSLVA-AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  321 (371)
T ss_dssp             SCCEEEEEEEETTEEEE-EETTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             cccceeeeecCCCCEEE-EEcCCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence            99999999999997665 55577655554  3322211                                        00


Q ss_pred             ccCCCCeeEEEEeCCC----CEEEEEECCCcEEEeC
Q 003271          804 SAHDKLVSSLAASTVN----GMVASASHDKCVKIWK  835 (835)
Q Consensus       804 ~~h~~~V~~la~spdg----~~LaSgs~DG~V~IWd  835 (835)
                      ..|.+.|+++++.+.+    ..|+|++.||.|+|||
T Consensus       322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~  357 (371)
T d1k8kc_         322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWD  357 (371)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEE
T ss_pred             ccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEe
Confidence            1388899999998755    3699999999999996

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.5e-33  Score=302.71  Aligned_cols=276  Identities=17%  Similarity=0.281  Sum_probs=235.6

Q ss_pred             cCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC
Q 003271          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (835)
Q Consensus       498 ~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg  577 (835)
                      ....+....++|++|+ |+.|++|........              .........+|.+.|.+++|+||+++|++|+.||
T Consensus        55 ~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~--------------~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg  119 (337)
T d1gxra_          55 CAVTISNPTRHVYTGG-KGCVKVWDISHPGNK--------------SPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEAS  119 (337)
T ss_dssp             CEEEECSSSSEEEEEC-BSEEEEEETTSTTCC--------------SCSEEEECSCTTSBEEEEEECTTSSEEEEEESSS
T ss_pred             EEEEECCCCCEEEEEE-CCEEEEEEccCCccc--------------ceeEEeeecCCCCcEEEEEEcCCCCEEEEeeccc
Confidence            3334444558999997 899999955433211              1112334568999999999999999999999999


Q ss_pred             eEEEEEcCC--CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271          578 KAVLWCTES--FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       578 ~I~VWd~~t--~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l  655 (835)
                      .|++||+..  .+....+..|...|.+++|+|++.++++++.|+.|++|++.+++ .......|...|.+++|++++. .
T Consensus       120 ~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~-~~~~~~~~~~~v~~l~~s~~~~-~  197 (337)
T d1gxra_         120 TLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT-LVRQFQGHTDGASCIDISNDGT-K  197 (337)
T ss_dssp             EEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE-EEEEECCCSSCEEEEEECTTSS-E
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccccccc-c
Confidence            999999874  45667788999999999999999999999999999999999876 4677888999999999999976 6


Q ss_pred             EEEEeCCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCC
Q 003271          656 LCSCDNNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTS  733 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspd  733 (835)
                      +++++.|+.|++||+++++.+..+.  ..+.+++|+|++..+++++.|+.|++||++++.... ...|...|.+++|+|+
T Consensus       198 ~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~i~~v~~s~~  276 (337)
T d1gxra_         198 LWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLHESCVLSLKFAYC  276 (337)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCCSSCEEEEEECTT
T ss_pred             cccccccccccccccccceeecccccccceEEEEEcccccccceecccccccccccccccccc-ccccccccceEEECCC
Confidence            6688899999999999999887665  558999999999999999999999999999887754 4569999999999999


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          734 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       734 g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      +++|++++ |+.|++||+.++   +.+..+. |...|.+++|+|++++|++++.|+.|+|||+
T Consensus       277 g~~l~s~s~Dg~i~iwd~~~~---~~~~~~~-~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         277 GKWFVSTGKDNLLNAWRTPYG---ASIFQSK-ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SSEEEEEETTSEEEEEETTTC---CEEEEEE-CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             CCEEEEEeCCCeEEEEECCCC---CEEEEcc-CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence            99999999 999999999987   5555544 6789999999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.5e-33  Score=300.04  Aligned_cols=245  Identities=16%  Similarity=0.243  Sum_probs=213.1

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe--EEEEeccCCCCeEEEEECCCCCEEEEEECC--CeEEE
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT--VKSTLEEHTQWITDVRFSPSLSRLATSSAD--RTVRV  623 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~--~i~~l~~h~~~V~sv~fspdg~~Latgs~D--g~I~I  623 (835)
                      ...+.+|.+.|+|++|+|+|++||+|+.||+|+|||+.+.+  ....+..|...|.+++|+|++++|++++.+  ..++|
T Consensus        51 ~~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v  130 (311)
T d1nr0a1          51 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  130 (311)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             eEEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccc
Confidence            44568999999999999999999999999999999998765  346678899999999999999999999864  56999


Q ss_pred             EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEc
Q 003271          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~  700 (835)
                      |++++++. ...+.+|...|.+++|+|+++.++++|+.|+.|++||+++++....+.   ..+.++.|+|++.++++++.
T Consensus       131 ~~~~~~~~-~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~  209 (311)
T d1nr0a1         131 FLFDTGTS-NGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG  209 (311)
T ss_dssp             EETTTCCB-CBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccc-cccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccc
Confidence            99998764 677889999999999999999889999999999999999998887775   45889999999999999999


Q ss_pred             CCcEEEEECCCCeEEEEEc-------CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC-ceEE
Q 003271          701 ENYISILDVETQVCRLKLQ-------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN-KFHS  771 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~-------~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~-~V~s  771 (835)
                      |+.|++||+.++..+..+.       +|...|++++|+|++++|++++ |+.|+|||++++   +++.++..+.. ....
T Consensus       210 d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~---~~~~~l~~~~~~~~~~  286 (311)
T d1nr0a1         210 DGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATL---KVEKTIPVGTRIEDQQ  286 (311)
T ss_dssp             TSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---EEEEEEECCSSGGGCE
T ss_pred             cccccccccccccccccccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCC---cEEEEEECCCCccceE
Confidence            9999999999988877664       4788999999999999999999 999999999988   77777766543 2233


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          772 CVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       772 v~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      +.+.+++..|++++.||.|++||.+
T Consensus       287 ~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         287 LGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             EEEEECSSCEEEEETTCCEEEEETT
T ss_pred             EEEEecCCEEEEEECCCEEEEEeCC
Confidence            3444456679999999999999974

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.4e-32  Score=285.07  Aligned_cols=264  Identities=24%  Similarity=0.465  Sum_probs=238.6

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      .++++|+.|+.|++|.....                   ..+..+.+|.+.|.+++|++++.++++++.++.+.+|+...
T Consensus        30 ~~l~s~s~Dg~i~iWd~~~~-------------------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          30 SVMVSASEDATIKVWDYETG-------------------DFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             SEEEEEESSSCEEEEETTTC-------------------CCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             CEEEEEeCCCeEEEEECCCC-------------------CEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            69999999999999944322                   23456789999999999999999999999999999999999


Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      .+....+..|...+.++.|++++..+++++.|+.+++||+.++.. +..+.+|...+.+++|++++. +|++++.|+.|+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~l~~~~~d~~v~  168 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYC-VKTFTGHREWVRMVRPNQDGT-LIASCSNDQTVR  168 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCE-EEEEECCSSCEEEEEECTTSS-EEEEEETTSCEE
T ss_pred             cccccccccccccceeeeccCCCceEEeeccCcceeEeeccccee-eeEEccCCCcceeeecccCCC-EEEEEeCCCeEE
Confidence            999999999999999999999999999999999999999998764 788889999999999999976 777999999999


Q ss_pred             EEECCCCeeeeEeec---CceEEEEecC--------------------CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCC
Q 003271          667 YWSINNGSCAGVFKS---GATQMRFQPR--------------------LGRILAAAIENYISILDVETQVCRLKLQGHKN  723 (835)
Q Consensus       667 iwDl~s~~~~~~~~~---~i~~l~fsp~--------------------~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~  723 (835)
                      +|++.+++....+..   .+..+.++|+                    +..+++++.|+.|++||+++++++..+.+|..
T Consensus       169 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~  248 (317)
T d1vyhc1         169 VWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN  248 (317)
T ss_dssp             EEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSS
T ss_pred             EEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCC
Confidence            999999888776653   3566666654                    35788999999999999999999999999999


Q ss_pred             CeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          724 QVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       724 ~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      .|.+++|+|++++|++++ ||.|+|||+.++   +++..+.+|...|++++|+|++++|++++.|++|+|||
T Consensus       249 ~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         249 WVRGVLFHSGGKFILSCADDKTLRVWDYKNK---RCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             CEEEEEECSSSSCEEEEETTTEEEEECCTTS---CCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEECCCC---cEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999998 999999999987   77888999999999999999999999999999999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=5.8e-32  Score=287.03  Aligned_cols=279  Identities=19%  Similarity=0.338  Sum_probs=222.4

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      +...++++||++.|.+ +++++|++||||+.||+|+|||+.+++++.++.+|...|.+++|+++  +|++++.|+.+++|
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~   82 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVW   82 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEE
T ss_pred             CCcCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccc
Confidence            3456789999999865 36667999999999999999999999999999999999999999875  99999999999999


Q ss_pred             ecCCCCceeEEeecCCCCeEEE--------------------------------------EEcCCCCcEEEEEeCCCcEE
Q 003271          625 DTENPDYSLRTFTGHSTTVMSL--------------------------------------DFHPSKEDLLCSCDNNSEIR  666 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl--------------------------------------~fsp~g~~ll~sgs~Dg~I~  666 (835)
                      +...... ......+...+...                                      .+... ...+++++.|+.|+
T Consensus        83 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~i~  160 (342)
T d2ovrb2          83 NAETGEC-IHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYD-GRRVVSGAYDFMVK  160 (342)
T ss_dssp             ETTTTEE-EEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEEC-SSCEEEEETTSCEE
T ss_pred             ccccccc-eecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccc-cceeeeecCCCeEE
Confidence            9875432 11111111111111                                      11112 22455777889999


Q ss_pred             EEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCe
Q 003271          667 YWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DEL  744 (835)
Q Consensus       667 iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~  744 (835)
                      +||+...+.+..+..+ .....+.+++..+++++.|+.|++||++.++.+..+.+|...+.++++++  ++|++++ |+.
T Consensus       161 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~--~~l~s~s~d~~  238 (342)
T d2ovrb2         161 VWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD--NILVSGNADST  238 (342)
T ss_dssp             EEEGGGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEET--TEEEEEETTSC
T ss_pred             EeecccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCC--CEEEEEcCCCE
Confidence            9999888887777644 55666777889999999999999999999999999999999999888764  6889888 999


Q ss_pred             EEEEEcCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Ee-----ccCCCCeeEEEE
Q 003271          745 VRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TL-----SAHDKLVSSLAA  815 (835)
Q Consensus       745 I~IwDl~t~~~~~~i~~l~---~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l-----~~h~~~V~~la~  815 (835)
                      |++||+...   .....+.   .|...+.++.++  +.++++++.||.|+|||+++++++ .+     .+|...|++++|
T Consensus       239 i~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~  313 (342)
T d2ovrb2         239 VKIWDIKTG---QCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  313 (342)
T ss_dssp             EEEEETTTC---CEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             EEEEecccc---cccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEE
Confidence            999999887   3444443   345566666665  568999999999999999999876 33     357788999999


Q ss_pred             eCCCCEEEEEECCCc----EEEeC
Q 003271          816 STVNGMVASASHDKC----VKIWK  835 (835)
Q Consensus       816 spdg~~LaSgs~DG~----V~IWd  835 (835)
                      +|++.+|++|+.||+    |++||
T Consensus       314 s~~~~~la~g~~dGt~~~~l~~~D  337 (342)
T d2ovrb2         314 SNTKLVCAVGSRNGTEETKLLVLD  337 (342)
T ss_dssp             CSSEEEEEEECSSSSSCCEEEEEE
T ss_pred             CCCCCEEEEEeCCCCCeeEEEEEe
Confidence            999999999999986    89997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=293.87  Aligned_cols=292  Identities=22%  Similarity=0.345  Sum_probs=229.8

Q ss_pred             cCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCC
Q 003271          498 APNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDK  577 (835)
Q Consensus       498 ~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg  577 (835)
                      ...++.....++++|+ |+.|++|...+........... ...............+|...|++++|+|++++|++|+.||
T Consensus        66 ~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg  143 (388)
T d1erja_          66 CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDS-AANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDR  143 (388)
T ss_dssp             CEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSEEEEEETTS
T ss_pred             EEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccc-cccccccccccccccCCCCCEEEEEECCCCCcceeccccc
Confidence            3344444457999997 8999999665442211100000 0001111122344567899999999999999999999999


Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEE
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLC  657 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~  657 (835)
                      .|++||..+++.+..+.+|...|.+++|++++..+++++.++.|++||+.+... ..... +...+.++.+.+....+|+
T Consensus       144 ~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~  221 (388)
T d1erja_         144 LIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLS-IEDGVTTVAVSPGDGKYIA  221 (388)
T ss_dssp             CEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-EEEEE-CSSCEEEEEECSTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccceeeeeeecccccc-ccccc-cccccccccccCCCCCeEE
Confidence            999999999999999999999999999999999999999999999999997653 34444 4455667777776567888


Q ss_pred             EEeCCCcEEEEECCCCeeeeEee----------cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe------------EE
Q 003271          658 SCDNNSEIRYWSINNGSCAGVFK----------SGATQMRFQPRLGRILAAAIENYISILDVETQV------------CR  715 (835)
Q Consensus       658 sgs~Dg~I~iwDl~s~~~~~~~~----------~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~------------~i  715 (835)
                      +++.|+.|++||+.++.....+.          ..+.+++|+|++..|++++.|+.|++||+++..            +.
T Consensus       222 ~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~  301 (388)
T d1erja_         222 AGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCE  301 (388)
T ss_dssp             EEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEE
T ss_pred             EEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCcccccccccccccee
Confidence            99999999999999988776553          348899999999999999999999999997543            33


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEE------eCCCCEEEEEEcCC
Q 003271          716 LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVF------HPTFPSLLVIGCYE  788 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~f------spdg~~L~sgs~dg  788 (835)
                      .....|...|.+++|+|++.+|++++ ||.|++||+.++   +++.++.+|...|.++++      +|++.+|++++.||
T Consensus       302 ~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~---~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg  378 (388)
T d1erja_         302 VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG---NPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDC  378 (388)
T ss_dssp             EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC---CEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTS
T ss_pred             eecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCC---cEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCC
Confidence            45556889999999999999999999 999999999988   788999999999999975      67889999999999


Q ss_pred             eEEEEEcC
Q 003271          789 TLELWNMT  796 (835)
Q Consensus       789 ~I~IwDl~  796 (835)
                      +|+|||++
T Consensus       379 ~I~iW~~~  386 (388)
T d1erja_         379 KARIWKYK  386 (388)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEeee
Confidence            99999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1e-31  Score=286.63  Aligned_cols=297  Identities=18%  Similarity=0.285  Sum_probs=236.7

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      ++++++|+.|+.|++|....                   ...+..+.+|.+.|++++|++++ +|++|+.|++|++|+..
T Consensus        23 ~~~l~tgs~Dg~i~vWd~~~-------------------~~~~~~l~~H~~~V~~l~~s~~~-~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2          23 DNYVITGADDKMIRVYDSIN-------------------KKFLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             TTEEEEEETTTEEEEEETTT-------------------TEEEEEEECCSSCEEEEEEETTT-EEEEEETTCCEEEEETT
T ss_pred             CCEEEEEeCCCeEEEEECCC-------------------CcEEEEEECCCCCEEEEEEcCCC-EEEEEeccccccccccc
Confidence            47999999999999994322                   24567788999999999999864 89999999999999999


Q ss_pred             CCeEEEEeccCC--CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce----------------------eEEeecCCC
Q 003271          586 SFTVKSTLEEHT--QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS----------------------LRTFTGHST  641 (835)
Q Consensus       586 t~~~i~~l~~h~--~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~----------------------~~~~~~h~~  641 (835)
                      ..+.......+.  ..+..+.+.+++.++++++.|+.|++||+.+....                      ......|..
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            988876665443  34556777889999999999999999998764421                      122233444


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE
Q 003271          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL  718 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l  718 (835)
                      .+.+...  ++ .+++++..|+.|++||+.+++.+.....   .+..+.+++.+..+++++.|+.|++||++++..+..+
T Consensus       163 ~v~~~~~--~~-~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~  239 (355)
T d1nexb2         163 SVRTVSG--HG-NIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTL  239 (355)
T ss_dssp             CEEEEEE--ET-TEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred             ccccccc--cc-ceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccc
Confidence            4554443  33 3777899999999999999988877653   4778899999999999999999999999999999999


Q ss_pred             cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE-EEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          719 QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       719 ~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv-~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      .+|...|.+++|+  +++|++++ ||.|++||+++..   .  .+..|...+.++ .+++++.+ ++++.|+.|+|||++
T Consensus       240 ~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~---~--~~~~~~~~~~~~~~~~~~~~~-l~~g~d~~i~vwd~~  311 (355)
T d1nexb2         240 QGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS---R--KFSYHHTNLSAITTFYVSDNI-LVSGSENQFNIYNLR  311 (355)
T ss_dssp             CCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC---E--EEEEECTTCCCCCEEEECSSE-EEEEETTEEEEEETT
T ss_pred             ccccccccccccc--cceeeeeecccccccccccccc---e--ecccccCCceEEEEEcCCCCE-EEEEeCCEEEEEECC
Confidence            9999999999986  46888888 9999999998762   2  233445555555 45666665 555568999999999


Q ss_pred             CCcEE--EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEe
Q 003271          797 ENKTL--TLSAHDKLVSSLAASTVNGMVASASHDKCVKIW  834 (835)
Q Consensus       797 ~~~~~--~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IW  834 (835)
                      +++++  .+.+|...|.+++|+++ .+|++++.||.++||
T Consensus       312 tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~  350 (355)
T d1nexb2         312 SGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLE  350 (355)
T ss_dssp             TCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred             CCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence            99987  45789999999999986 578889999997776

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=4.9e-31  Score=281.36  Aligned_cols=277  Identities=17%  Similarity=0.283  Sum_probs=222.8

Q ss_pred             EEEEecCCCCCE-EEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          547 EFQLIPASTSKV-ESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       547 ~i~~l~gH~~~V-~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      +..+|+||.+.| +|++|  ++++||+|+.||+|+|||+.+++++.++.+|.+.|++++|+++ .+|++|+.|++|++|+
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~   80 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD   80 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccc
Confidence            356789999886 56655  5789999999999999999999999999999999999999986 5899999999999999


Q ss_pred             cCCCCceeEEeecC--CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----------------------
Q 003271          626 TENPDYSLRTFTGH--STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------------------  680 (835)
Q Consensus       626 l~t~~~~~~~~~~h--~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----------------------  680 (835)
                      +..... ......+  ...+..+.+.+++ .++++++.|+.|++||+.+........                       
T Consensus        81 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (355)
T d1nexb2          81 IKKGCC-THVFEGHNSTVRCLDIVEYKNI-KYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR  158 (355)
T ss_dssp             TTTTEE-EEEECCCSSCEEEEEEEEETTE-EEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEE
T ss_pred             cccccc-cccccccccccccccccccccc-ceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeee
Confidence            998664 3333222  2334455666664 477789999999999998765433211                       


Q ss_pred             -cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcce
Q 003271          681 -SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGEC  758 (835)
Q Consensus       681 -~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~  758 (835)
                       .......+.++++.++++..|+.|++||+++++.+..+.++...+.++.|++++.++++++ |+.|++||+.++   ..
T Consensus       159 ~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~---~~  235 (355)
T d1nexb2         159 GHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENG---EL  235 (355)
T ss_dssp             CCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTC---CE
T ss_pred             eccccccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccc---cc
Confidence             0122345667789999999999999999999999999999999999999999999999999 999999999988   78


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEE-EEeCCCCEEEEEECCCcEEEeC
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSL-AASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~l-a~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +..+.+|...|.+++|++  ++|++++.|+.|++||+.+...... .|...+.++ ++++++.+|++| .||.|+|||
T Consensus       236 ~~~~~~h~~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~g-~d~~i~vwd  309 (355)
T d1nexb2         236 MYTLQGHTALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFS-YHHTNLSAITTFYVSDNILVSG-SENQFNIYN  309 (355)
T ss_dssp             EEEECCCSSCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEE-EECTTCCCCCEEEECSSEEEEE-ETTEEEEEE
T ss_pred             cccccccccccccccccc--ceeeeeecccccccccccccceecc-cccCCceEEEEEcCCCCEEEEE-eCCEEEEEE
Confidence            888999999999999875  5899999999999999998876533 445555554 566777776665 589999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6e-31  Score=289.33  Aligned_cols=284  Identities=15%  Similarity=0.189  Sum_probs=229.2

Q ss_pred             CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE
Q 003271          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (835)
Q Consensus       481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s  560 (835)
                      +.+++.|++++               .++++|+.|+.|++|..                 .+..+..+..+.+|.++|++
T Consensus         9 pIt~~~~s~dg---------------~~la~~~~~~~i~iw~~-----------------~~~~~~~~~~l~gH~~~V~~   56 (371)
T d1k8kc_           9 PISCHAWNKDR---------------TQIAICPNNHEVHIYEK-----------------SGNKWVQVHELKEHNGQVTG   56 (371)
T ss_dssp             CCCEEEECTTS---------------SEEEEECSSSEEEEEEE-----------------ETTEEEEEEEEECCSSCEEE
T ss_pred             CeEEEEECCCC---------------CEEEEEeCCCEEEEEEC-----------------CCCCEEEEEEecCCCCCEEE
Confidence            45667777655               68899999999999932                 12345567888999999999


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCeE--EEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCce---eEE
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTESFTV--KSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYS---LRT  635 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~--i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~---~~~  635 (835)
                      ++|+|++++|++|+.|++|+|||+.++..  ...+.+|...|++++|+|++++|++++.|++|++|+++.....   ...
T Consensus        57 l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~  136 (371)
T d1k8kc_          57 VDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHI  136 (371)
T ss_dssp             EEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEE
T ss_pred             EEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccccc
Confidence            99999999999999999999999987654  4556788999999999999999999999999999998865532   244


Q ss_pred             eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCe------------------eeeEee---cCceEEEEecCCCE
Q 003271          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGS------------------CAGVFK---SGATQMRFQPRLGR  694 (835)
Q Consensus       636 ~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~------------------~~~~~~---~~i~~l~fsp~~~~  694 (835)
                      ...|...|.+++|+|++. +|++|+.|+.|++||+....                  .+....   ..+.+++|+|++..
T Consensus       137 ~~~~~~~v~~v~~~p~~~-~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~  215 (371)
T d1k8kc_         137 KKPIRSTVLSLDWHPNSV-LLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSR  215 (371)
T ss_dssp             CTTCCSCEEEEEECTTSS-EEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSE
T ss_pred             cccccccccccccccccc-ceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccc
Confidence            557889999999999976 67799999999999986532                  111211   33788999999999


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcce----------E--E--
Q 003271          695 ILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGEC----------I--H--  760 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~----------i--~--  760 (835)
                      +++++.|+.|++||+.++..+..+..|..+|.+++|+|++.+|++|.|+.+++|+.........          .  .  
T Consensus       216 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~s~~fs~d~~~la~g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (371)
T d1k8kc_         216 VAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGL  295 (371)
T ss_dssp             EEEEETTTEEEEEEGGGTTEEEEEECSSCCEEEEEEEETTEEEEEETTSSCEEEEEETTTTEEEECCCCCCC--------
T ss_pred             ccccccCCcceEEeeecccceeeeecccccceeeeecCCCCEEEEEcCCceEEEEeeCCCceEEEeeeecCccccccccc
Confidence            9999999999999999999999999999999999999999999988888777766543210000          0  0  


Q ss_pred             ------------------------EeecCCCceEEEEEeCCC----CEEEEEEcCCeEEEEEcCC
Q 003271          761 ------------------------ELSCTGNKFHSCVFHPTF----PSLLVIGCYETLELWNMTE  797 (835)
Q Consensus       761 ------------------------~l~~~~~~V~sv~fspdg----~~L~sgs~dg~I~IwDl~~  797 (835)
                                              ....|.+.|+++++.+.+    ..|++++.||.|+|||+++
T Consensus       296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         296 TARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cceeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence                                    011377789999998754    3588999999999999854

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.98  E-value=4.2e-30  Score=266.30  Aligned_cols=274  Identities=20%  Similarity=0.363  Sum_probs=219.7

Q ss_pred             eEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEE
Q 003271          545 FTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVW  624 (835)
Q Consensus       545 ~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IW  624 (835)
                      +..+....+|...|+|++|  ||++||+|+.||+|+|||+.+++++.++.+|.+.|++++|  ++++|++|+.|+.|++|
T Consensus         5 ~~~i~~~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~   80 (293)
T d1p22a2           5 LQRIHCRSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVW   80 (293)
T ss_dssp             CCCEECCCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeeccccccccccc
Confidence            3456777889999999765  7899999999999999999999999999999999999988  56799999999999999


Q ss_pred             ecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE---eecC-ceEEEEecCCCEEEEEEc
Q 003271          625 DTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV---FKSG-ATQMRFQPRLGRILAAAI  700 (835)
Q Consensus       625 Dl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~---~~~~-i~~l~fsp~~~~ll~~s~  700 (835)
                      ++..+.. ......+......  +.+... .++++..++.+.+||.........   +..+ .....+......+++++.
T Consensus        81 ~~~~~~~-~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~  156 (293)
T d1p22a2          81 DVNTGEM-LNTLIHHCEAVLH--LRFNNG-MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASG  156 (293)
T ss_dssp             ESSSCCE-EEEECCCCSCEEE--EECCTT-EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETTEEEEEET
T ss_pred             ccccccc-ccccccccccccc--cccccc-ceeecccccceeEeeccccccccccccccccccccccceecccccccccC
Confidence            9998764 3333333333333  333333 567888899999999987654322   2222 222333444578889999


Q ss_pred             CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271          701 ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  779 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~  779 (835)
                      |+.|++||+++++.+..+.++...+..+.++  +.+|++++ |+.|++||+++.   ..+.....+...+..  +.+++.
T Consensus       157 d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~---~~~~~~~~~~~~v~~--~~~~~~  229 (293)
T d1p22a2         157 DRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECG---ACLRVLEGHEELVRC--IRFDNK  229 (293)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEE--EECCSS
T ss_pred             CCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecCCCEEEEEecccc---eeeeeecccceeeee--ccccce
Confidence            9999999999999999999999999888875  56788888 999999999987   677777777777764  566788


Q ss_pred             EEEEEEcCCeEEEEEcCCC---------cEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          780 SLLVIGCYETLELWNMTEN---------KTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       780 ~L~sgs~dg~I~IwDl~~~---------~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +|++++.|+.|++||+...         ..+ .+.+|.+.|++++|+  +.+|+||+.||+|+|||
T Consensus       230 ~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         230 RIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             EEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             EEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            9999999999999997432         233 678999999999984  67899999999999998

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.6e-30  Score=271.87  Aligned_cols=266  Identities=14%  Similarity=0.213  Sum_probs=223.7

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      +.++++.||.++|+|++|+|    |++|+.||+|++||+.++     ...|...|.+++|+++ ..+++++.|++|++|+
T Consensus         4 ~~i~~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~-----~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~   73 (287)
T d1pgua2           4 EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNG   73 (287)
T ss_dssp             EEEEEECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE-----ECCCCSCEEEEECCST-TCCEEEETTTEEEETT
T ss_pred             ceeEEECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC-----CCCCCCCEEEEEecCC-CeEEEEeecccccccc
Confidence            56889999999999999987    999999999999998764     3589999999999876 4689999999999999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEcCC-cE
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAIEN-YI  704 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~dg-~I  704 (835)
                      +....        ....+.++.+++++. ++++ ..++.+.+|+..+++.+..+.......++++++..+++++.++ .|
T Consensus        74 ~~~~~--------~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~v  143 (287)
T d1pgua2          74 ITKHE--------FGSQPKVASANNDGF-TAVL-TNDDDLLILQSFTGDIIKSVRLNSPGSAVSLSQNYVAVGLEEGNTI  143 (287)
T ss_dssp             EEEEE--------CSSCEEEEEECSSSE-EEEE-ETTSEEEEEETTTCCEEEEEECSSCEEEEEECSSEEEEEETTTSCE
T ss_pred             ccccc--------cccceeeeeeccCCc-eEEE-eecccceeeeccceeeeeeccccceeeeeeccCcceeeecccccee
Confidence            76422        234577888888854 4434 4577899999999999998887777888999999999998875 69


Q ss_pred             EEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceE-EEeecCCCceEEEEEeCC----
Q 003271          705 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECI-HELSCTGNKFHSCVFHPT----  777 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i-~~l~~~~~~V~sv~fspd----  777 (835)
                      ++|++........+. .|...+++++|+|++.+|++++ |+.|++||+.++   ..+ ..+..|...|.+++|+|.    
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~---~~~~~~~~~h~~~v~~~~~~p~~~~~  220 (287)
T d1pgua2         144 QVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSR---EVKTSRWAFRTSKINAISWKPAEKGA  220 (287)
T ss_dssp             EEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---EEEECCSCCCSSCEEEEEECCCC---
T ss_pred             eeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccc---ccccccccccccccceeeeccccccc
Confidence            999998776666554 4778899999999999999999 999999999876   333 345678899999999875    


Q ss_pred             ------CCEEEEEEcCCeEEEEEcCC-CcEE-EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          778 ------FPSLLVIGCYETLELWNMTE-NKTL-TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       778 ------g~~L~sgs~dg~I~IwDl~~-~~~~-~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                            +.+|++++.|+.|+|||+.+ .+.+ .+.+|...|++++|++++ .|++++.||.|+|||
T Consensus       221 ~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~  285 (287)
T d1pgua2         221 NEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWN  285 (287)
T ss_dssp             ---CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEE
T ss_pred             ccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEE
Confidence                  46899999999999999976 4444 566899999999999976 689999999999996

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9.4e-30  Score=274.89  Aligned_cols=277  Identities=14%  Similarity=0.188  Sum_probs=219.2

Q ss_pred             CCEEEEEEeCCCCEEEEEeCCC-eEEEEEcCC--CeEEEEeccC-CCCeEEEEECC--CCCEEEEEECCCeEEEEecCCC
Q 003271          556 SKVESCHFSPDGKLLATGGHDK-KAVLWCTES--FTVKSTLEEH-TQWITDVRFSP--SLSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       556 ~~V~sl~fSpdg~~Lasgs~Dg-~I~VWd~~t--~~~i~~l~~h-~~~V~sv~fsp--dg~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +.+++++|+|+++.|++++.+. .|+.|+...  ...+..+.+| ...|++++|+|  ++.+|++|+.||+|+|||+...
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~   97 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFD   97 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCccceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCC
Confidence            3578999999999999887554 355666543  2445667777 46899999998  5789999999999999998754


Q ss_pred             Cce-------eEEeecCCCCeEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCE-EEE
Q 003271          630 DYS-------LRTFTGHSTTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGR-ILA  697 (835)
Q Consensus       630 ~~~-------~~~~~~h~~~V~sl~fsp~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~-ll~  697 (835)
                      ...       ...+..|..+|.+++|++++..+++++ +.++.+++|+..+++++..+..   .+.+++|+|++.. +++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~  177 (325)
T d1pgua1          98 KESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMT  177 (325)
T ss_dssp             GGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred             cceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEE
Confidence            421       123567889999999999988766544 3578899999999998887763   4888999999876 667


Q ss_pred             EEcCCcEEEEECCCCeEEEEEc---CCCCCeEEEEEcCC-CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEE
Q 003271          698 AAIENYISILDVETQVCRLKLQ---GHKNQVHSVCWNTS-GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       698 ~s~dg~I~IwDl~t~~~i~~l~---~h~~~I~sl~fspd-g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv  772 (835)
                      ++.|+.|++||+...+....+.   .|...|.+++|+|+ +.+|++++ |+.|++||++++   +++..+..|...+..+
T Consensus       178 ~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~---~~~~~l~~~~~~v~~~  254 (325)
T d1pgua1         178 VGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSG---EFLKYIEDDQEPVQGG  254 (325)
T ss_dssp             EETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTC---CEEEECCBTTBCCCSC
T ss_pred             eecccccccccccccccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccc---cccccccccccccccc
Confidence            8889999999999887766654   46778999999996 68888888 999999999988   7888888888777665


Q ss_pred             EEe---CCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCC--CeeEEEEeCC-CCEEEEEECCCcEEEeC
Q 003271          773 VFH---PTFPSLLVIGCYETLELWNMTENKTL-TLSAHDK--LVSSLAASTV-NGMVASASHDKCVKIWK  835 (835)
Q Consensus       773 ~fs---pdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~--~V~~la~spd-g~~LaSgs~DG~V~IWd  835 (835)
                      .|+   +++.+|++++.|+.|+|||+.+++++ .+..|..  .+..+++.+. +.+|++++.||.|+|||
T Consensus       255 ~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwd  324 (325)
T d1pgua1         255 IFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYE  324 (325)
T ss_dssp             EEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEE
T ss_pred             eeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEEEECCCEEEEEE
Confidence            555   78899999999999999999999987 3444433  3444444433 34899999999999997

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=2.7e-28  Score=259.52  Aligned_cols=274  Identities=23%  Similarity=0.379  Sum_probs=234.5

Q ss_pred             CceEEEEecCCCCCccccCccccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEE
Q 003271          481 SKSLLMFGSDGMGSLTSAPNQLTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVES  560 (835)
Q Consensus       481 ~~s~~~~s~~~~g~~~s~~~~~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~s  560 (835)
                      ....+.|++++               .++++|+.|+.|++|.....                   ..+..+.+|...|.+
T Consensus        57 ~I~~l~~s~~~---------------~~l~sgs~Dg~v~iWd~~~~-------------------~~~~~~~~~~~~v~~  102 (340)
T d1tbga_          57 KIYAMHWGTDS---------------RLLVSASQDGKLIIWDSYTT-------------------NKVHAIPLRSSWVMT  102 (340)
T ss_dssp             CEEEEEECTTS---------------SEEEEEETTTEEEEEETTTT-------------------EEEEEEECSCSCEEE
T ss_pred             CEEEEEECCCC---------------CEEEEEECCCceeeeecccc-------------------eeEEEEecccccEEe
Confidence            45666776655               68999999999999943222                   346678899999999


Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCC----CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTES----FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t----~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      ++|+|++.+|++|+.|+.|++|+...    ......+.+|...+....+.. +..++....|..+..|+...... ....
T Consensus       103 v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~  180 (340)
T d1tbga_         103 CAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCALWDIETGQQ-TTTF  180 (340)
T ss_dssp             EEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEEEEETTTTEE-EEEE
T ss_pred             eEeeccceeeeeecccceeecccccccccccccceeccccccccccccccc-ccccccccccccccccccccccc-cccc
Confidence            99999999999999999999999764    345677788888776665554 46788888999999999886553 5566


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      ..+...+..+.+.+.+. ++++++.|+.|++||+++++++..+.   ..+.+++|+|++.+|++++.|+.|++||++...
T Consensus       181 ~~~~~~~~~~~~~~~~~-~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~  259 (340)
T d1tbga_         181 TGHTGDVMSLSLAPDTR-LFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQ  259 (340)
T ss_dssp             ECCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             cccceeEeeeccccccc-eeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccc
Confidence            66778899999988865 77789999999999999999988776   348899999999999999999999999999988


Q ss_pred             EEEEEc--CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeE
Q 003271          714 CRLKLQ--GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETL  790 (835)
Q Consensus       714 ~i~~l~--~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I  790 (835)
                      .+..+.  .+...|.+++|+|++.+|++++ ||.|+|||+.++   +++..+.+|...|++++|+|++.+|++++.||.|
T Consensus       260 ~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~---~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v  336 (340)
T d1tbga_         260 ELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFL  336 (340)
T ss_dssp             EEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTC---CEEEEECCCSSCEEEEEECTTSSCEEEEETTSCE
T ss_pred             cccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCC---cEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEE
Confidence            877654  4667899999999999999999 999999999987   7889999999999999999999999999999999


Q ss_pred             EEEE
Q 003271          791 ELWN  794 (835)
Q Consensus       791 ~IwD  794 (835)
                      +|||
T Consensus       337 ~iWd  340 (340)
T d1tbga_         337 KIWN  340 (340)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=9e-30  Score=269.00  Aligned_cols=289  Identities=12%  Similarity=0.053  Sum_probs=217.4

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeE---EEEeccCCCCeEEEEECCC-CCEEEEEECCCeE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTV---KSTLEEHTQWITDVRFSPS-LSRLATSSADRTV  621 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~---i~~l~~h~~~V~sv~fspd-g~~Latgs~Dg~I  621 (835)
                      +.+....+|++.|++|+|+|++++||+|+.||+|+|||+.+...   +....+|...|.+++|+++ +.+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            35677889999999999999999999999999999999875432   2333469999999999986 5589999999999


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------cCceEEEEecCC
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------SGATQMRFQPRL  692 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------~~i~~l~fsp~~  692 (835)
                      ++|++............+........+.++ ...+++++.++.+++||++.........         .......+.+.+
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeecccccccccccccccccccccccccc-cccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            999999876533333333333444444444 4578899999999999986543322211         224566788889


Q ss_pred             CEEEEEEcCCcEEEEECCCCeE---EEEEcCCCCCeEEEEEc-CCCCEEEEEe-CCeEEEEEcCCCCCcc------eEE-
Q 003271          693 GRILAAAIENYISILDVETQVC---RLKLQGHKNQVHSVCWN-TSGEYLASVS-DELVRVWSIGSGSKGE------CIH-  760 (835)
Q Consensus       693 ~~ll~~s~dg~I~IwDl~t~~~---i~~l~~h~~~I~sl~fs-pdg~~Lasgs-Dg~I~IwDl~t~~~~~------~i~-  760 (835)
                      ..+++++.|+.|++||+.....   ......+...+.++.+. .++..+++++ ||.+.+|++.......      ... 
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            9999999999999999986532   22333455556666654 4667888888 9999999987542211      111 


Q ss_pred             -----EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          761 -----ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       761 -----~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                           ....|...+++++|+|++++|++|+.||.|+|||+.+++.+....+...+..++|++++++|++++.|+.+++|.
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~sdd~~~~~~  320 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLATSDDTFKTNA  320 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEEECTHHHHCS
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEEcCCcEEEee
Confidence                 123456678999999999999999999999999999999885554445666788899999999999888877663

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=2.7e-28  Score=263.35  Aligned_cols=244  Identities=16%  Similarity=0.261  Sum_probs=201.1

Q ss_pred             EEEEecCC-CCCEEEEEEeC--CCCEEEEEeCCCeEEEEEcCCCe--------EEEEeccCCCCeEEEEECCCCCEEEEE
Q 003271          547 EFQLIPAS-TSKVESCHFSP--DGKLLATGGHDKKAVLWCTESFT--------VKSTLEEHTQWITDVRFSPSLSRLATS  615 (835)
Q Consensus       547 ~i~~l~gH-~~~V~sl~fSp--dg~~Lasgs~Dg~I~VWd~~t~~--------~i~~l~~h~~~V~sv~fspdg~~Latg  615 (835)
                      .+..+.+| ...|++++|+|  ++.+||+|+.||+|+|||+..++        ....+..|.+.|.+++|++++++|+++
T Consensus        54 ~~~~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~  133 (325)
T d1pgua1          54 PVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVV  133 (325)
T ss_dssp             SEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ceEEEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCcccee
Confidence            34556677 46799999998  67899999999999999986432        223456789999999999999999887


Q ss_pred             EC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee------cCceEEE
Q 003271          616 SA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK------SGATQMR  687 (835)
Q Consensus       616 s~--Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~------~~i~~l~  687 (835)
                      +.  ++.+++|+.+++. .+..+.+|...|.+++|+|++..++++++.|+.|++||+...+....+.      ..+.+++
T Consensus       134 ~~~~~~~~~~~~~~~~~-~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~  212 (325)
T d1pgua1         134 GEGRDNFGVFISWDSGN-SLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  212 (325)
T ss_dssp             ECCSSCSEEEEETTTCC-EEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eccccceEEEEeecccc-cceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEee
Confidence            65  6789999999876 4788889999999999999998888899999999999999887665543      3388999


Q ss_pred             EecC-CCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEc---CCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe
Q 003271          688 FQPR-LGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWN---TSGEYLASVS-DELVRVWSIGSGSKGECIHEL  762 (835)
Q Consensus       688 fsp~-~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fs---pdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l  762 (835)
                      |+|+ +..+++++.|+.|++||+++++.+..+.+|...+.++.|+   +++.+|++++ |+.|+|||++++   +++..+
T Consensus       213 ~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~---~~~~~~  289 (325)
T d1pgua1         213 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTS---KCVQKW  289 (325)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTT---EEEEEE
T ss_pred             eccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCC---CEEEEE
Confidence            9997 5778889999999999999999999999888777655554   7899999998 999999999987   677776


Q ss_pred             ecCCCc--eE--EEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          763 SCTGNK--FH--SCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       763 ~~~~~~--V~--sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      ..+...  +.  ++.+.++ .+|++++.||.|+|||+
T Consensus       290 ~~~~~~~~~~~~~~~~~~~-~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         290 TLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ECCTTCGGGCEEEEEEEET-TEEEEEETTSCEEEEET
T ss_pred             EecCCcccCeEEEEEECCC-CEEEEEECCCEEEEEEC
Confidence            665543  33  4444443 47899999999999996

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.97  E-value=2.9e-28  Score=257.28  Aligned_cols=239  Identities=16%  Similarity=0.171  Sum_probs=197.2

Q ss_pred             CeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          587 FTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       587 ~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      |+..+.+.+|.+.|++|+|+|++++|+||+.||+|+|||+.++.. ...+ ..|...|.+++|+|++. ++ +++.|+.|
T Consensus         2 g~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-~~~~~~~h~~~v~~v~~~~~g~-~~-~~~~d~~v   78 (299)
T d1nr0a2           2 GSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-NRVFPDVHATMITGIKTTSKGD-LF-TVSWDDHL   78 (299)
T ss_dssp             TEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-EECSSCSCSSCEEEEEECTTSC-EE-EEETTTEE
T ss_pred             CccceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcE-EEEEcCCCCCcEEEEEeeccce-ee-cccceeeE
Confidence            567889999999999999999999999999999999999998775 4444 57899999999999975 44 66679999


Q ss_pred             EEEECCCCee------eeEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEE
Q 003271          666 RYWSINNGSC------AGVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLAS  739 (835)
Q Consensus       666 ~iwDl~s~~~------~~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Las  739 (835)
                      ++|+......      .......+..++|++++..++ ++.++.+.+|+...  .....  ....+.+++|+|++.+|++
T Consensus        79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~-~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~~~~~l~~  153 (299)
T d1nr0a2          79 KVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAV-AACYKHIAIYSHGK--LTEVP--ISYNSSCVALSNDKQFVAV  153 (299)
T ss_dssp             EEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEE-EEESSEEEEEETTE--EEEEE--CSSCEEEEEECTTSCEEEE
T ss_pred             EEeccCCcccccccccccccccccccccccccccccc-cccccccccccccc--ccccc--ccccccccccccccccccc
Confidence            9999865432      122335578899999987555 45567899999653  22222  3456889999999999999


Q ss_pred             Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE----EeccCCCCeeEEE
Q 003271          740 VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL----TLSAHDKLVSSLA  814 (835)
Q Consensus       740 gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~----~l~~h~~~V~~la  814 (835)
                      ++ |+.|++||+++..  ........|...|.+++|+|++.+|++++.++.|++||+.++...    .+..|...|++++
T Consensus       154 g~~dg~i~~~d~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~  231 (299)
T d1nr0a2         154 GGQDSKVHVYKLSGAS--VSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVS  231 (299)
T ss_dssp             EETTSEEEEEEEETTE--EEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEE
T ss_pred             cccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            98 9999999998762  122234567889999999999999999999999999999887765    4567999999999


Q ss_pred             EeCCCCEEEEEECCCcEEEeC
Q 003271          815 ASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       815 ~spdg~~LaSgs~DG~V~IWd  835 (835)
                      |+|++.+|++|+.||.|+|||
T Consensus       232 ~s~~~~~l~sgs~dg~i~iwd  252 (299)
T d1nr0a2         232 WSPDNVRLATGSLDNSVIVWN  252 (299)
T ss_dssp             ECTTSSEEEEEETTSCEEEEE
T ss_pred             ccccccceEEEcCCCEEEEEE
Confidence            999999999999999999996

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=5.4e-28  Score=267.63  Aligned_cols=284  Identities=15%  Similarity=0.175  Sum_probs=213.2

Q ss_pred             EEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe------EEEEeccCCCCeEEEEE------CC-CCCEE
Q 003271          546 TEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT------VKSTLEEHTQWITDVRF------SP-SLSRL  612 (835)
Q Consensus       546 ~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~------~i~~l~~h~~~V~sv~f------sp-dg~~L  612 (835)
                      ......++|.+.|+++++++  ++|++++.|++|+|||..+.+      .......|...+..+.+      +. +..++
T Consensus         5 ~~~~~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (393)
T d1sq9a_           5 ATANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLV   82 (393)
T ss_dssp             EEEEESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEE
T ss_pred             eeeecCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEE
Confidence            34567789999999999874  699999999999999976542      12222345544433332      11 24578


Q ss_pred             EEEECCCeEEEEecCCCCceeEE---------eecCCCCeEEEEEcCCC----CcEEEEEeCCCcEEEEECCCCee----
Q 003271          613 ATSSADRTVRVWDTENPDYSLRT---------FTGHSTTVMSLDFHPSK----EDLLCSCDNNSEIRYWSINNGSC----  675 (835)
Q Consensus       613 atgs~Dg~I~IWDl~t~~~~~~~---------~~~h~~~V~sl~fsp~g----~~ll~sgs~Dg~I~iwDl~s~~~----  675 (835)
                      ++++.||.|++|++.........         ...+...+..++|.++.    ..++++++.||.|++|++.....    
T Consensus        83 ~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~  162 (393)
T d1sq9a_          83 ATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNS  162 (393)
T ss_dssp             EEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHH
T ss_pred             EEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccce
Confidence            89999999999998654321111         11244567788887764    25678899999999999853210    


Q ss_pred             -----------eeEe------ecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE------cCCCCCeEEEEEcC
Q 003271          676 -----------AGVF------KSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNT  732 (835)
Q Consensus       676 -----------~~~~------~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l------~~h~~~I~sl~fsp  732 (835)
                                 ....      ...+.+++|+|++ +|++++.|+.|+|||+.+++.+..+      .+|...|.+++|+|
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~sp  241 (393)
T d1sq9a_         163 LTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSP  241 (393)
T ss_dssp             TTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECS
T ss_pred             eeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEccccc
Confidence                       0011      1237789999985 8899999999999999999887654      46889999999999


Q ss_pred             CCCEEEEEe-CC---eEEEEEcCCCCCcceEEEe-------------ecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          733 SGEYLASVS-DE---LVRVWSIGSGSKGECIHEL-------------SCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       733 dg~~Lasgs-Dg---~I~IwDl~t~~~~~~i~~l-------------~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      +|++|++++ |+   .|++||+.++   .++..+             .+|...|++++|+|++++|++++.|++|+|||+
T Consensus       242 dg~~l~sgs~D~t~~~i~lwd~~~g---~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~  318 (393)
T d1sq9a_         242 QGSLLAIAHDSNSFGCITLYETEFG---ERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDV  318 (393)
T ss_dssp             STTEEEEEEEETTEEEEEEEETTTC---CEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEET
T ss_pred             ccceeeeecCCCCcceeeecccccc---eeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEEC
Confidence            999999998 65   5999999987   444444             478899999999999999999999999999999


Q ss_pred             CCCcEE-EeccCCCC---------------------eeEEEEeCCC----------CEEEEEECCCcEEEeC
Q 003271          796 TENKTL-TLSAHDKL---------------------VSSLAASTVN----------GMVASASHDKCVKIWK  835 (835)
Q Consensus       796 ~~~~~~-~l~~h~~~---------------------V~~la~spdg----------~~LaSgs~DG~V~IWd  835 (835)
                      .+++++ .+.+|...                     +.++.|.+.+          ..|++++.|+.|++|+
T Consensus       319 ~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ir~~~  390 (393)
T d1sq9a_         319 KTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFR  390 (393)
T ss_dssp             TTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEE
T ss_pred             CCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcccceEEECccCceeccccCCCCEEEEEEcCCeEEEEe
Confidence            999988 66777543                     4556665542          3588999999999984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-25  Score=233.52  Aligned_cols=262  Identities=22%  Similarity=0.352  Sum_probs=202.6

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      +++|++|+.|+.|++|.....                   ..+..+.+|.+.|++++|+++  +|++|+.|+.+++|+..
T Consensus        27 g~~l~sgs~Dg~i~vWd~~~~-------------------~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~   85 (342)
T d2ovrb2          27 GNRIVSGSDDNTLKVWSAVTG-------------------KCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNAE   85 (342)
T ss_dssp             TTEEEEEETTSCEEEEETTTC-------------------CEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEETT
T ss_pred             CCEEEEEeCCCeEEEEECCCC-------------------CEEEEEeCCCCCEEEEEeCCC--ccccceecccccccccc
Confidence            468999999999999943322                   356778899999999999975  99999999999999987


Q ss_pred             CCeEEEEeccCCCCeEEE--------------------------------------EECCCCCEEEEEECCCeEEEEecC
Q 003271          586 SFTVKSTLEEHTQWITDV--------------------------------------RFSPSLSRLATSSADRTVRVWDTE  627 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv--------------------------------------~fspdg~~Latgs~Dg~I~IWDl~  627 (835)
                      ..........+...+...                                      .+......+++++.|+.|++||+.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~  165 (342)
T d2ovrb2          86 TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE  165 (342)
T ss_dssp             TTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGG
T ss_pred             cccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecc
Confidence            765554443332222221                                      222344567888888999999988


Q ss_pred             CCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-ceEEEEecCCCEEEEEEcCCcEEE
Q 003271          628 NPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-ATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       628 t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                      ... .+..+.+|...+.++.+.  + ..+++++.||.|++||++.++++..+..+ ....++.++++++++++.|+.|++
T Consensus       166 ~~~-~~~~~~~~~~~~~~~~~~--~-~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~s~s~d~~i~i  241 (342)
T d2ovrb2         166 TET-CLHTLQGHTNRVYSLQFD--G-IHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI  241 (342)
T ss_dssp             GTE-EEEEECCCSSCEEEEEEC--S-SEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEETTEEEEEETTSCEEE
T ss_pred             cce-eeEEEcCcccccccccCC--C-CEEEEEeCCCeEEEeecccceeeeEecccccceeEEecCCCEEEEEcCCCEEEE
Confidence            655 467778888877777665  3 36789999999999999999988877644 222334455679999999999999


Q ss_pred             EECCCCeEEEEEcC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEee-----cCCCceEEEEEeCC
Q 003271          707 LDVETQVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELS-----CTGNKFHSCVFHPT  777 (835)
Q Consensus       707 wDl~t~~~i~~l~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~-----~~~~~V~sv~fspd  777 (835)
                      ||+...+....+..   |...+.++.++  ++++++++ ||.|+|||++++   +++..+.     +|...|++++|+|+
T Consensus       242 wd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~tg---~~i~~~~~~~~~~~~~~v~~v~~s~~  316 (342)
T d2ovrb2         242 WDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTG---EFIRNLVTLESGGSGGVVWRIRASNT  316 (342)
T ss_dssp             EETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTC---CEEEEEEECTTGGGTCEEEEEEECSS
T ss_pred             EecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCCC---CEEEEEecccCCCCCCCEEEEEECCC
Confidence            99999888877765   55667777665  56888888 999999999998   5665553     46778999999999


Q ss_pred             CCEEEEEEcCC----eEEEEEcCC
Q 003271          778 FPSLLVIGCYE----TLELWNMTE  797 (835)
Q Consensus       778 g~~L~sgs~dg----~I~IwDl~~  797 (835)
                      +.+|++|+.||    .|++||++.
T Consensus       317 ~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         317 KLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EEEEEEECSSSSSCCEEEEEECCC
T ss_pred             CCEEEEEeCCCCCeeEEEEEeCCC
Confidence            99999999888    499999864

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=5.5e-25  Score=227.26  Aligned_cols=259  Identities=19%  Similarity=0.353  Sum_probs=211.8

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcC
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTE  585 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~  585 (835)
                      +++|++|+.|+.|++|....                   ...+.++.+|.+.|++++|  ++++|++|+.|+.|++|++.
T Consensus        25 ~~~l~sgs~Dg~i~vWd~~~-------------------~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2          25 DQKIVSGLRDNTIKIWDKNT-------------------LECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             SSEEEEEESSSCEEEEESSS-------------------CCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             CCEEEEEeCCCeEEEEECCC-------------------CcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            47899999999999994322                   2456788999999999987  57899999999999999999


Q ss_pred             CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC
Q 003271          586 SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS  663 (835)
Q Consensus       586 t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg  663 (835)
                      .+........+.....  .+.+....++++..++.+.+||......  ....+..|...|.++.+.+.   .+++++.|+
T Consensus        84 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~s~d~  158 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVL--HLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDK---YIVSASGDR  158 (293)
T ss_dssp             SCCEEEEECCCCSCEE--EEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEETT---EEEEEETTS
T ss_pred             cccccccccccccccc--cccccccceeecccccceeEeeccccccccccccccccccccccceeccc---ccccccCCC
Confidence            9988877765554443  3445667899999999999999987553  34556778889998888754   667888999


Q ss_pred             cEEEEECCCCeeeeEeecCc-eEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-
Q 003271          664 EIRYWSINNGSCAGVFKSGA-TQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-  741 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~~i-~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-  741 (835)
                      .|++||+++++.+..+.... ....+.+++..+++++.|+.|++||+++...+..+.+|...+.+  +++++.+|++++ 
T Consensus       159 ~i~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~~~~~~l~sg~~  236 (293)
T d1p22a2         159 TIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRC--IRFDNKRIVSGAY  236 (293)
T ss_dssp             EEEEEETTTCCEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE--EECCSSEEEEEET
T ss_pred             ceeeecCCCCcEEEEEcccccccccccCCCCeEEEecCCCEEEEEecccceeeeeecccceeeee--ccccceEEEEEcC
Confidence            99999999999988887552 23334555679999999999999999999999999988888875  456788999998 


Q ss_pred             CCeEEEEEcCCCC------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEE
Q 003271          742 DELVRVWSIGSGS------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWN  794 (835)
Q Consensus       742 Dg~I~IwDl~t~~------~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwD  794 (835)
                      ||.|++||+....      ...++..+.+|...|.+++|+  +.+|++++.|++|+|||
T Consensus       237 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD  293 (293)
T ss_dssp             TSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred             CCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence            9999999986432      235778889999999999995  56799999999999997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=6e-26  Score=243.96  Aligned_cols=267  Identities=12%  Similarity=0.044  Sum_probs=207.2

Q ss_pred             EEEEEeC-CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC--eEEEEecCCCCceeEE
Q 003271          559 ESCHFSP-DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR--TVRVWDTENPDYSLRT  635 (835)
Q Consensus       559 ~sl~fSp-dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg--~I~IWDl~t~~~~~~~  635 (835)
                      ..-.||| ||++||+++ +|.|+|||++++..+..  .|...|.+++|+|||++|++++.+.  .|++||+.++.  ...
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~--~~~   80 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK--AEK   80 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC--EEE
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc--EEE
Confidence            3467999 999999987 57999999998887653  6999999999999999998877653  79999999765  567


Q ss_pred             eecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEc----------CC
Q 003271          636 FTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAI----------EN  702 (835)
Q Consensus       636 ~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~----------dg  702 (835)
                      +..|...|.+++|+|+++ .|++++.++.+++|++.+++....+..   .+.+++|+|++.+|+++..          ++
T Consensus        81 ~~~~~~~v~~~~~spdg~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~  159 (360)
T d1k32a3          81 FEENLGNVFAMGVDRNGK-FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ  159 (360)
T ss_dssp             CCCCCCSEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEE
T ss_pred             eeCCCceEEeeeeccccc-ccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccc
Confidence            788999999999999987 666888899999999999988777653   4788999999999987653          34


Q ss_pred             cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCC----cceEEE----------------
Q 003271          703 YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSK----GECIHE----------------  761 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~----~~~i~~----------------  761 (835)
                      .+++||+.+++..... .+...+.+++|+|+|++|++++ ++.+++||......    ......                
T Consensus       160 ~~~v~d~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~  238 (360)
T d1k32a3         160 AIHVYDMEGRKIFAAT-TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPR  238 (360)
T ss_dssp             EEEEEETTTTEEEECS-CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred             ceeeeccccCceeeec-ccccccccccccCCCCEEEEEeCCCceEcccccccceeeccccceEEEecccCccccceECCC
Confidence            5899999988765444 4778889999999999999998 88999998654210    011111                


Q ss_pred             --------------------eecCCCceEEEEEeCCCC-------------EEEEEEcCCeEEEEEcCCCcEEEeccCCC
Q 003271          762 --------------------LSCTGNKFHSCVFHPTFP-------------SLLVIGCYETLELWNMTENKTLTLSAHDK  808 (835)
Q Consensus       762 --------------------l~~~~~~V~sv~fspdg~-------------~L~sgs~dg~I~IwDl~~~~~~~l~~h~~  808 (835)
                                          +.........+...+++.             +++.++.++.|++||+.+++...+.   +
T Consensus       239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~---~  315 (360)
T d1k32a3         239 SMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK---N  315 (360)
T ss_dssp             GGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE---E
T ss_pred             cCcccccceeecccccceeecccCcCceeEeeecCCCceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEEEec---C
Confidence                                111112223333333322             2334455679999999998876544   4


Q ss_pred             CeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          809 LVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       809 ~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .|.+++|+|||++|++++.||.|++||
T Consensus       316 ~v~~~~~SpDG~~l~~~~~Dg~i~v~d  342 (360)
T d1k32a3         316 NLTDLRLSADRKTVMVRKDDGKIYTFP  342 (360)
T ss_dssp             EEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred             CcCEEEECCCCCEEEEEECCCeEEEEE
Confidence            589999999999999999999999996

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=2.6e-25  Score=234.41  Aligned_cols=248  Identities=12%  Similarity=0.099  Sum_probs=194.7

Q ss_pred             eEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCc--eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE
Q 003271          588 TVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDY--SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI  665 (835)
Q Consensus       588 ~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~--~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I  665 (835)
                      +.+....+|.+.|++|+|+|++++||+|+.||+|+|||+.+...  .+....+|..+|.+++|+|++..+|++|+.|+.|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v   81 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI   81 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence            45677789999999999999999999999999999999987554  2344457999999999999888899999999999


Q ss_pred             EEEECCCCeeeeEeecC----ceEEEEecCCCEEEEEEcCCcEEEEECCCC----eEEEEEcCC--CCCeEEEEEcCCCC
Q 003271          666 RYWSINNGSCAGVFKSG----ATQMRFQPRLGRILAAAIENYISILDVETQ----VCRLKLQGH--KNQVHSVCWNTSGE  735 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~----~~i~~l~~h--~~~I~sl~fspdg~  735 (835)
                      ++|++............    .....+.++...+++++.++.+++||++..    ........+  ......+.+.+.+.
T Consensus        82 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (342)
T d1yfqa_          82 LKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSS  161 (342)
T ss_dssp             EEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSS
T ss_pred             eeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCC
Confidence            99999887766554322    445567778899999999999999998743    222222222  23345667778888


Q ss_pred             EEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe-CCCCEEEEEEcCCeEEEEEcCCCcEE------------
Q 003271          736 YLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTFPSLLVIGCYETLELWNMTENKTL------------  801 (835)
Q Consensus       736 ~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs-pdg~~L~sgs~dg~I~IwDl~~~~~~------------  801 (835)
                      .+++++ |+.|++||+..................+.++.+. .++..+++++.||.+.+|++......            
T Consensus       162 ~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~  241 (342)
T d1yfqa_         162 RLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCH  241 (342)
T ss_dssp             EEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECC
T ss_pred             ceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeeee
Confidence            888888 9999999998876545555555555566666655 46678999999999999998653211            


Q ss_pred             ----EeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          802 ----TLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       802 ----~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                          ....|...|++|+|+|++++||||+.||.|+|||
T Consensus       242 ~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD  279 (342)
T d1yfqa_         242 RLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWN  279 (342)
T ss_dssp             CCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEE
T ss_pred             eeccCCCcccccceeEEecCCccEEEEECCCCEEEEEE
Confidence                1235667899999999999999999999999997

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=7.9e-24  Score=233.81  Aligned_cols=261  Identities=17%  Similarity=0.159  Sum_probs=191.6

Q ss_pred             CcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEE------eC-CCCEEEEEeCCCe
Q 003271          506 DRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHF------SP-DGKLLATGGHDKK  578 (835)
Q Consensus       506 ~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~f------Sp-dg~~Lasgs~Dg~  578 (835)
                      .++++++|.|+.|++|........             .+.........|...+..+..      +. ++.++++++.||.
T Consensus        24 ~~~l~S~S~D~~iriWd~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~   90 (393)
T d1sq9a_          24 NSFTVSCSGDGYLKVWDNKLLDNE-------------NPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGD   90 (393)
T ss_dssp             SSEEEEEETTSEEEEEESBCCTTC-------------CGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSC
T ss_pred             CCEEEEEECCCeEEEEECCCCCCC-------------cccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCc
Confidence            468999999999999953322111             011111222344444333222      11 3346889999999


Q ss_pred             EEEEEcCCCe----EE-EEe-----ccCCCCeEEEEECCC-----CCEEEEEECCCeEEEEecCCCCc------------
Q 003271          579 AVLWCTESFT----VK-STL-----EEHTQWITDVRFSPS-----LSRLATSSADRTVRVWDTENPDY------------  631 (835)
Q Consensus       579 I~VWd~~t~~----~i-~~l-----~~h~~~V~sv~fspd-----g~~Latgs~Dg~I~IWDl~t~~~------------  631 (835)
                      |++|++....    .. ...     ..+...+..++|.++     +.++++++.||+|++|++.....            
T Consensus        91 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  170 (393)
T d1sq9a_          91 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPT  170 (393)
T ss_dssp             EEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCE
T ss_pred             EEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccc
Confidence            9999865321    11 111     234556788888775     46899999999999999853210            


Q ss_pred             -----eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------cCceEEEEecCCCEEEE
Q 003271          632 -----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------SGATQMRFQPRLGRILA  697 (835)
Q Consensus       632 -----~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------~~i~~l~fsp~~~~ll~  697 (835)
                           .......+...+.+++|+|++  +|++|+.|+.|++||+.+++.+..+.         ..+.+++|+|++.+|++
T Consensus       171 ~~~~~~~~~~~~~~~~~~~v~~s~dg--~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~s  248 (393)
T d1sq9a_         171 LELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAI  248 (393)
T ss_dssp             EEEEEEECCSSSSCCCCCEEEECTTS--EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEE
T ss_pred             eecccceecccCCCCcEEEEEECCCC--EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeee
Confidence                 011123355678999999986  78899999999999999998876554         34899999999999999


Q ss_pred             EEcCC---cEEEEECCCCeEEEEEc-------------CCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEE
Q 003271          698 AAIEN---YISILDVETQVCRLKLQ-------------GHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIH  760 (835)
Q Consensus       698 ~s~dg---~I~IwDl~t~~~i~~l~-------------~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~  760 (835)
                      ++.|+   .|++||++++.++..+.             +|...|++|+|+|++++|++++ |++|+|||+.++   .++.
T Consensus       249 gs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g---~~~~  325 (393)
T d1sq9a_         249 AHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTK---ERIT  325 (393)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---EEEE
T ss_pred             ecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCC---CEEE
Confidence            99987   49999999998887764             7999999999999999999999 999999999998   8999


Q ss_pred             EeecCCCceE----EEEEeCCCCEEEEE
Q 003271          761 ELSCTGNKFH----SCVFHPTFPSLLVI  784 (835)
Q Consensus       761 ~l~~~~~~V~----sv~fspdg~~L~sg  784 (835)
                      ++.+|...|.    .++|++++..++++
T Consensus       326 ~l~gH~~~v~~~~~~~~~~~~~~~~~~~  353 (393)
T d1sq9a_         326 TLNMHCDDIEIEEDILAVDEHGDSLAEP  353 (393)
T ss_dssp             EEECCGGGCSSGGGCCCBCTTSCBCSSC
T ss_pred             EECCcCCcccCCccEEEECCCCCEEEEc
Confidence            9999887664    46777777765533

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.5e-23  Score=219.60  Aligned_cols=247  Identities=12%  Similarity=0.169  Sum_probs=195.4

Q ss_pred             EEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCe
Q 003271          509 VDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFT  588 (835)
Q Consensus       509 l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~  588 (835)
                      +++|+.|+.|++|...                        ....+|...|.+++|++++ .+++++.|++|++|++... 
T Consensus        24 l~sgs~Dg~v~~Wd~~------------------------~~~~~h~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~-   77 (287)
T d1pgua2          24 LISGSYDGRIMEWSSS------------------------SMHQDHSNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKH-   77 (287)
T ss_dssp             TEEEETTSCEEETTTT------------------------EEECCCCSCEEEEECCSTT-CCEEEETTTEEEETTEEEE-
T ss_pred             EEEEeCCCeEEEEECC------------------------CCCCCCCCCEEEEEecCCC-eEEEEeecccccccccccc-
Confidence            7899999999999321                        1135899999999999765 6789999999999987542 


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEE
Q 003271          589 VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYW  668 (835)
Q Consensus       589 ~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iw  668 (835)
                            .+...+.++.+++++..++++ .++.+.+|+..++.. +..+.. ...+.  ++++++..+++++..++.|++|
T Consensus        78 ------~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~-~~~~~--~~~~~~~~~~v~~~~~~~v~~~  146 (287)
T d1pgua2          78 ------EFGSQPKVASANNDGFTAVLT-NDDDLLILQSFTGDI-IKSVRL-NSPGS--AVSLSQNYVAVGLEEGNTIQVF  146 (287)
T ss_dssp             ------ECSSCEEEEEECSSSEEEEEE-TTSEEEEEETTTCCE-EEEEEC-SSCEE--EEEECSSEEEEEETTTSCEEEE
T ss_pred             ------ccccceeeeeeccCCceEEEe-ecccceeeeccceee-eeeccc-cceee--eeeccCcceeeeccccceeeee
Confidence                  234567888999887666665 566788999887664 444443 33444  4556666666666656789999


Q ss_pred             ECCCCeeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE-EEcCCCCCeEEEEEcCC----------
Q 003271          669 SINNGSCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTS----------  733 (835)
Q Consensus       669 Dl~s~~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~-~l~~h~~~I~sl~fspd----------  733 (835)
                      ++...+....+.    ..+.+++|+|++.+|++++.|+.|++||+.++.... .+.+|...|.+++|+|.          
T Consensus       147 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~  226 (287)
T d1pgua2         147 KLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIE  226 (287)
T ss_dssp             ETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------CCS
T ss_pred             eccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccccccceeeecccccccccccCC
Confidence            998766544433    458899999999999999999999999999988765 45679999999999874          


Q ss_pred             CCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          734 GEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       734 g~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      +.+|++++ |+.|+|||+.+..  ..+..+.+|...|++++|+|++ .|++++.|+.|++||+
T Consensus       227 ~~~l~sgs~D~~i~iw~~~~~~--~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         227 EDLVATGSLDTNIFIYSVKRPM--KIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             CCEEEEEETTSCEEEEESSCTT--CCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             CCeeEeecCCCeEEEEECCCCC--eEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            46899998 9999999997742  5677788999999999999986 5899999999999996

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.92  E-value=6.8e-22  Score=206.61  Aligned_cols=258  Identities=12%  Similarity=0.128  Sum_probs=212.0

Q ss_pred             EEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEE-EEECCCeEEEEecCCCCceeEEeecCCCCeEEEEE
Q 003271          570 LATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDF  648 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~f  648 (835)
                      +++++.|++|.|||+++++.+.++... ..+..++|+|||++|+ +++.++.|++||+.+++. +..+..+. .+..+.|
T Consensus         5 yV~~~~~~~v~v~D~~t~~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~-~~~~~~~~-~~~~~~~   81 (301)
T d1l0qa2           5 YIANSESDNISVIDVTSNKVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV-IATVPAGS-SPQGVAV   81 (301)
T ss_dssp             EEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEE-EEEEECSS-SEEEEEE
T ss_pred             EEEECCCCEEEEEECCCCeEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCce-eeeeeccc-ccccccc
Confidence            345678999999999999999988654 4578999999999875 566789999999998764 66666554 5789999


Q ss_pred             cCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCe
Q 003271          649 HPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQV  725 (835)
Q Consensus       649 sp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I  725 (835)
                      ++++..+++++..++.+.+|+..+++....+...  ..+++|+|++..+++++. ++.+.+|+..+...+..+.. ...+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  160 (301)
T d1l0qa2          82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV-GRSP  160 (301)
T ss_dssp             CTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC-CSSE
T ss_pred             ccccccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeeccc-CCCc
Confidence            9999989989999999999999999988877643  678999999998877665 67899999999998888874 4568


Q ss_pred             EEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC---CeEEEEEcCCCcE
Q 003271          726 HSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY---ETLELWNMTENKT  800 (835)
Q Consensus       726 ~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d---g~I~IwDl~~~~~  800 (835)
                      .++.+++++.+++++.  ++.+.+|+....   .....+. ....+..++|++++..+++++.+   +.|++||+.++++
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~  236 (301)
T d1l0qa2         161 KGIAVTPDGTKVYVANFDSMSISVIDTVTN---SVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI  236 (301)
T ss_dssp             EEEEECTTSSEEEEEETTTTEEEEEETTTT---EEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE
T ss_pred             eEEEeeccccceeeecccccccccccccce---eeeeccc-ccCCcceeeccccccccccccccceeeeeeeeecCCCeE
Confidence            8999999999888887  467888887665   4444433 45667889999999998877654   4899999999998


Q ss_pred             EEeccCCCCeeEEEEeCCCCEE-EEEECCCcEEEeC
Q 003271          801 LTLSAHDKLVSSLAASTVNGMV-ASASHDKCVKIWK  835 (835)
Q Consensus       801 ~~l~~h~~~V~~la~spdg~~L-aSgs~DG~V~IWd  835 (835)
                      +....+...+.+++|+|||++| ++++.|+.|+|||
T Consensus       237 ~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~D  272 (301)
T d1l0qa2         237 TARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVID  272 (301)
T ss_dssp             EEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            8655566778999999999976 6777899999997

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.92  E-value=2.7e-23  Score=232.56  Aligned_cols=310  Identities=9%  Similarity=0.018  Sum_probs=223.2

Q ss_pred             CCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEc
Q 003271          505 MDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCT  584 (835)
Q Consensus       505 ~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~  584 (835)
                      ...++++.+.|+.|++|+..                   +...+..+..|. .+..++|||||++|++++.|++|++||+
T Consensus        31 ~~~~~V~~~~dg~v~vwD~~-------------------t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~   90 (426)
T d1hzua2          31 PNLFSVTLRDAGQIALVDGD-------------------SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDL   90 (426)
T ss_dssp             GGEEEEEETTTTEEEEEETT-------------------TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             CeEEEEEEcCCCEEEEEECC-------------------CCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEc
Confidence            34567888899999999332                   234566677774 5999999999999999999999999999


Q ss_pred             CCCeEEE--Ee---ccCCCCeEEEEECCCCCEEEEE-ECCCeEEEEecCCCCceeEEeecCC-----------CCeEEEE
Q 003271          585 ESFTVKS--TL---EEHTQWITDVRFSPSLSRLATS-SADRTVRVWDTENPDYSLRTFTGHS-----------TTVMSLD  647 (835)
Q Consensus       585 ~t~~~i~--~l---~~h~~~V~sv~fspdg~~Latg-s~Dg~I~IWDl~t~~~~~~~~~~h~-----------~~V~sl~  647 (835)
                      .+++...  .+   .+|...+.+++|+|||++|+++ ..++.|++||..+... ...+..|.           .....+.
T Consensus        91 ~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~  169 (426)
T d1hzua2          91 WAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEP-KQIVSTRGMTVDTQTYHPEPRVAAII  169 (426)
T ss_dssp             TSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCE-EEEEECCEECSSSCCEESCCCEEEEE
T ss_pred             cCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccce-eEEeeccCCCccceeecCCCceeEEE
Confidence            9886432  22   3566777888899999987554 5789999999998764 44444443           3345566


Q ss_pred             EcCCCCcEEEEEeCCCcEEEEECCCCeee--eEee--cCceEEEEecCCCEEEEEEcC-CcEEEEECCCCeEEEEEcC--
Q 003271          648 FHPSKEDLLCSCDNNSEIRYWSINNGSCA--GVFK--SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQG--  720 (835)
Q Consensus       648 fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~--~~~~--~~i~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~--  720 (835)
                      +++++..++++....+.+.+++.......  ..+.  .....+.|+|++.+++++..+ ..+.++|..+++.+..+..  
T Consensus       170 ~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  249 (426)
T d1hzua2         170 ASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK  249 (426)
T ss_dssp             ECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSS
T ss_pred             ECCCCCEEEEecCCCCeEEEEEeccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCC
Confidence            66666666656655666666666554432  2222  336789999999999888764 6799999999988877653  


Q ss_pred             CCCCeEEEEEcCCCC--EEEEEe--CCeEEEEEcCCCC----CcceEEEeecCCCceEEEEEeCCCCEEEEE-------E
Q 003271          721 HKNQVHSVCWNTSGE--YLASVS--DELVRVWSIGSGS----KGECIHELSCTGNKFHSCVFHPTFPSLLVI-------G  785 (835)
Q Consensus       721 h~~~I~sl~fspdg~--~Lasgs--Dg~I~IwDl~t~~----~~~~i~~l~~~~~~V~sv~fspdg~~L~sg-------s  785 (835)
                      +......+.+...+.  ..++..  |+.+.+|+.....    ..+....+.+|...+..++|+|++++|++.       .
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~  329 (426)
T d1hzua2         250 TPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDAR  329 (426)
T ss_dssp             CCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHH
T ss_pred             cccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcc
Confidence            222233344433332  222222  7789999876542    135778899999999999999999999963       4


Q ss_pred             cCCeEEEEEcCCCcEE-E---------eccCCCCeeEEEEeCCCCEEEE-E----ECCCcEEEeC
Q 003271          786 CYETLELWNMTENKTL-T---------LSAHDKLVSSLAASTVNGMVAS-A----SHDKCVKIWK  835 (835)
Q Consensus       786 ~dg~I~IwDl~~~~~~-~---------l~~h~~~V~~la~spdg~~LaS-g----s~DG~V~IWd  835 (835)
                      .+++|+|||+.++++. +         +..|...|.+++|+|||++|+. +    +.||.|+|||
T Consensus       330 ~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D  394 (426)
T d1hzua2         330 ISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVD  394 (426)
T ss_dssp             HHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEE
T ss_pred             cCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEE
Confidence            4679999999988754 2         2356677999999999996643 3    3578899997

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.91  E-value=6.9e-23  Score=219.72  Aligned_cols=240  Identities=6%  Similarity=-0.014  Sum_probs=185.5

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCC--eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPD  630 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg--~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~  630 (835)
                      +|...|.+++|+|||++|++++.+.  .|++||+++++.. .+..|...|.+++|+|++++|++++.++.+++|++.++.
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~-~~~~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAE-KFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEE-ECCCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEE-EeeCCCceEEeeeecccccccceeccccccccccccccc
Confidence            7899999999999999998876553  7999999887765 567899999999999999999999999999999999876


Q ss_pred             ceeEEeecCCCCeEEEEEcCCCCcEEEEEe---------CCCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEE
Q 003271          631 YSLRTFTGHSTTVMSLDFHPSKEDLLCSCD---------NNSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       631 ~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs---------~Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s  699 (835)
                      . ...+..|...+.+++|+|+++.++++..         .++.+++||+.+++......  ..+..++|+|++..|++++
T Consensus       119 ~-~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s  197 (360)
T d1k32a3         119 P-TVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLS  197 (360)
T ss_dssp             E-EEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEE
T ss_pred             e-eeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEe
Confidence            4 6778889999999999999987765442         34579999999987765544  3467789999999999999


Q ss_pred             cCCcEEEEECCCCeE-------EEEEcCCC------------------------------------CCeEEEEEcCCCCE
Q 003271          700 IENYISILDVETQVC-------RLKLQGHK------------------------------------NQVHSVCWNTSGEY  736 (835)
Q Consensus       700 ~dg~I~IwDl~t~~~-------i~~l~~h~------------------------------------~~I~sl~fspdg~~  736 (835)
                      .++.+.+||......       ...+..|.                                    .....+...+++..
T Consensus       198 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (360)
T d1k32a3         198 YRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSIL  277 (360)
T ss_dssp             SCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEE
T ss_pred             CCCceEcccccccceeeccccceEEEecccCccccceECCCcCcccccceeecccccceeecccCcCceeEeeecCCCce
Confidence            999999998754322       11111111                                    12223333333222


Q ss_pred             -------------EEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          737 -------------LASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       737 -------------Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                                   +++++ ++.|++||+.+++   . ..   +...|.+++|+|||++|++++.||.|++||+++++..
T Consensus       278 ~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~---~-~~---~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~  349 (360)
T d1k32a3         278 IYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRK---V-TE---VKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDE  349 (360)
T ss_dssp             EEECCCCCSHHHHHHCCCCCEEEEEEETTTCC---E-EE---EEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSC
T ss_pred             EEEEEecCCCeeEEEecCCCCEEEEEECCCCe---E-EE---ecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcc
Confidence                         23333 6689999998762   2 22   2345899999999999999999999999999987755

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.90  E-value=3.7e-23  Score=232.67  Aligned_cols=306  Identities=10%  Similarity=-0.009  Sum_probs=215.0

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTES  586 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t  586 (835)
                      -++++.+.|+.|.+|+.                   .+...+..+..|. .+..++|||||++|++++.|+.|++||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~-------------------~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDG-------------------STYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEET-------------------TTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEEC-------------------CCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            35688999999999933                   2334566666664 599999999999999999999999999987


Q ss_pred             Ce--EEEEe---ccCCCCeEEEEECCCCCEE-EEEECCCeEEEEecCCCCceeEEeec-----------CCCCeEEEEEc
Q 003271          587 FT--VKSTL---EEHTQWITDVRFSPSLSRL-ATSSADRTVRVWDTENPDYSLRTFTG-----------HSTTVMSLDFH  649 (835)
Q Consensus       587 ~~--~i~~l---~~h~~~V~sv~fspdg~~L-atgs~Dg~I~IWDl~t~~~~~~~~~~-----------h~~~V~sl~fs  649 (835)
                      ++  .+..+   .+|.+.+.++.|+|||++| ++++.+++|+|||..+++. +..+..           +......+.++
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~s  171 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-KKIQSTRGMTYDEQEYHPEPRVAAILAS  171 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-EEEEECCEECTTTCCEESCCCEEEEEEC
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccc-eeeeccCCccccceeccCCCceeEEEEC
Confidence            65  33333   3566777778889999986 6778899999999998764 444332           44567788999


Q ss_pred             CCCCcEEEEEeCCCcEEEEECCCCeeee--Eee--cCceEEEEecCCCEEEEEEcC-CcEEEEECCCCeEEEEEcC----
Q 003271          650 PSKEDLLCSCDNNSEIRYWSINNGSCAG--VFK--SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQG----  720 (835)
Q Consensus       650 p~g~~ll~sgs~Dg~I~iwDl~s~~~~~--~~~--~~i~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~----  720 (835)
                      +++..++++...++.|.+||..+.+...  .+.  .....++|+|++.++++++.+ +.+.++|..+.+.+..+..    
T Consensus       172 ~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~  251 (432)
T d1qksa2         172 HYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT  251 (432)
T ss_dssp             SSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred             CCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccc
Confidence            9999888899999999999998876543  333  236789999999998888875 6899999999888776542    


Q ss_pred             -CCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEE-------------------
Q 003271          721 -HKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVF-------------------  774 (835)
Q Consensus       721 -h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~f-------------------  774 (835)
                       |........+...+...++..  ++.|.+|+......    .+....+..+......++.                   
T Consensus       252 ~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~~~  331 (432)
T d1qksa2         252 PHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEI  331 (432)
T ss_dssp             BCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHH
T ss_pred             cccCcccceecCCCCceecccccCCceEEecccccccccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCCCe
Confidence             334445555655666666655  77899998755321    1122222222111111111                   


Q ss_pred             -----eCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEE-----CCCcEEEeC
Q 003271          775 -----HPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASAS-----HDKCVKIWK  835 (835)
Q Consensus       775 -----spdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs-----~DG~V~IWd  835 (835)
                           .||++.|++++.|+.+++||+.++.  .+..|...|.+++|+|||++|+.+.     .||.|+|||
T Consensus       332 ~~sv~vpDg~~la~~s~d~~~k~w~~~~~~--~l~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D  400 (432)
T d1qksa2         332 SGSVAVFDIKAMTGDGSDPEFKTLPIAEWA--GITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVD  400 (432)
T ss_dssp             HTCEEEEEGGGCCCSSSCCCEEEECHHHHH--TCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEE
T ss_pred             eeEEEEEechhhcccccCCceEeccccccc--ccCCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEE
Confidence                 1445555555555666666553332  2235777899999999999876554     468899997

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=2.5e-20  Score=194.46  Aligned_cols=265  Identities=15%  Similarity=0.178  Sum_probs=209.3

Q ss_pred             EeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEE-EEeCCCeEEEEEcCCCe
Q 003271          510 DDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLA-TGGHDKKAVLWCTESFT  588 (835)
Q Consensus       510 ~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~La-sgs~Dg~I~VWd~~t~~  588 (835)
                      ++++.|++|.+|+....                   +.++.++.. ..+..++|+|||++|+ +++.++.|++||+.+++
T Consensus         6 V~~~~~~~v~v~D~~t~-------------------~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~   65 (301)
T d1l0qa2           6 IANSESDNISVIDVTSN-------------------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNN   65 (301)
T ss_dssp             EEETTTTEEEEEETTTT-------------------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTE
T ss_pred             EEECCCCEEEEEECCCC-------------------eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCc
Confidence            45678889999943222                   233334333 4578999999999875 56678999999999999


Q ss_pred             EEEEeccCCCCeEEEEECCCCCEEEE-EECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 003271          589 VKSTLEEHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (835)
Q Consensus       589 ~i~~l~~h~~~V~sv~fspdg~~Lat-gs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i  667 (835)
                      .+..+..|. .+..++|++++..+++ +..++.+.+|+..++.. ...+. +...+.++.|+|++..+++++..++.+.+
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~dg~~~~~~~~~~~~~~~  142 (301)
T d1l0qa2          66 VIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTV-AGTVK-TGKSPLGLALSPDGKKLYVTNNGDKTVSV  142 (301)
T ss_dssp             EEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEE-CSSSEEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeeccc-cccccccccccccccccccccceeeeccccccee-eeecc-ccccceEEEeecCCCeeeeeeccccceee
Confidence            999998775 4689999999886655 45678999999987653 44444 44678899999999989889999999999


Q ss_pred             EECCCCeeeeEeec--CceEEEEecCCCEEEEEEcC-CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---
Q 003271          668 WSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---  741 (835)
Q Consensus       668 wDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---  741 (835)
                      |+..+.+.+..+..  ....+.+++++..+++++.+ +.+.+|+....+....+. ....+..++|++++..++.+.   
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~  221 (301)
T d1l0qa2         143 INTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDK  221 (301)
T ss_dssp             EETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECS
T ss_pred             eeccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeeccc-ccCCcceeeccccccccccccccc
Confidence            99999998887764  36789999999999988876 667788888777776665 445678899999999887654   


Q ss_pred             -CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEE-EEEcCCeEEEEEcCCCcEEE
Q 003271          742 -DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLL-VIGCYETLELWNMTENKTLT  802 (835)
Q Consensus       742 -Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~-sgs~dg~I~IwDl~~~~~~~  802 (835)
                       ++.|++||+.++   +.+..+.. ...+..++|+|+|++|+ +++.++.|++||+.+++++.
T Consensus       222 ~~~~v~v~D~~t~---~~~~~~~~-~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~  280 (301)
T d1l0qa2         222 YFNTVSMIDTGTN---KITARIPV-GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITA  280 (301)
T ss_dssp             SCCEEEEEETTTT---EEEEEEEC-CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eeeeeeeeecCCC---eEEEEEcC-CCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEE
Confidence             458999999987   66666654 45689999999999886 45568899999999998873

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=5.9e-21  Score=202.15  Aligned_cols=260  Identities=11%  Similarity=0.072  Sum_probs=200.6

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEecc--CCCCeEEEEECCCCCEEE-EEECCCeEEEEecCCCCceeEEeecCC----
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEE--HTQWITDVRFSPSLSRLA-TSSADRTVRVWDTENPDYSLRTFTGHS----  640 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~--h~~~V~sv~fspdg~~La-tgs~Dg~I~IWDl~t~~~~~~~~~~h~----  640 (835)
                      +||++++.|++|+|||+.+++.+.++..  +...+.+++|+|||++|+ +++.++.|.+||+.+++. +..+..+.    
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~-~~~~~~~~~~~~   80 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGET-LGRIDLSTPEER   80 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCE-EEEEECCBTTEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCccc
Confidence            4899999999999999999999988865  345678999999999875 566799999999999775 44444432    


Q ss_pred             -CCeEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEeec--CceEEEEecCCCEEEEEEcCCcEEE
Q 003271          641 -TTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFKS--GATQMRFQPRLGRILAAAIENYISI  706 (835)
Q Consensus       641 -~~V~sl~fsp~g~~ll~sgs-----------~Dg~I~iwDl~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~dg~I~I  706 (835)
                       ..+..++|+|+++.+++++.           .+..+.+||..+++....+..  .+..++|++++.++++++  +.+.+
T Consensus        81 ~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~--~~~~~  158 (337)
T d1pbyb_          81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG--RDLHV  158 (337)
T ss_dssp             EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES--SSEEE
T ss_pred             ccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc--CCcce
Confidence             34567899999987765543           467899999999998887763  477899999999998875  55788


Q ss_pred             EECCCCeEEEEEcCCCCCeEEEEEcCCCC------------------------EEEEEe-CCeEEEEEcCCCCCcceEEE
Q 003271          707 LDVETQVCRLKLQGHKNQVHSVCWNTSGE------------------------YLASVS-DELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       707 wDl~t~~~i~~l~~h~~~I~sl~fspdg~------------------------~Lasgs-Dg~I~IwDl~t~~~~~~i~~  761 (835)
                      ||..+++....+..+... ....+.+++.                        .+.... ++.+.+||+.++.  .....
T Consensus       159 ~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  235 (337)
T d1pbyb_         159 MDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE--MAMRE  235 (337)
T ss_dssp             EETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCC--EEEEE
T ss_pred             eeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEEEEcCCCc--EEEEE
Confidence            999999888877543221 1111122111                        111111 3468899988773  23344


Q ss_pred             eecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          762 LSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       762 l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +..+...+..+.+++++.+++++  ++.|++||+.+++.+....+...+.+++|+|||++|++++.|+.|+|||
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D  307 (337)
T d1pbyb_         236 VRIMDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYD  307 (337)
T ss_dssp             EEECSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred             ecCCCcceEEEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            55677788899999999987765  4789999999999997777888899999999999999999999999997

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=1.9e-21  Score=206.74  Aligned_cols=267  Identities=10%  Similarity=0.033  Sum_probs=199.5

Q ss_pred             EEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCCCEEEE-EECCCeEEEEecCCCCceeEEeec
Q 003271          561 CHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLSRLAT-SSADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       561 l~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~~Lat-gs~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      ++|+++++||++++.|+.|.|||+++++++.++. .|...+.+++|+|||+++++ ++.++.|++||+.+++. +..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~-~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKN-TFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEE-EEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCee-eeeecc
Confidence            4789999999999999999999999999999886 45667889999999998754 55789999999998764 333322


Q ss_pred             C------CCCeEEEEEcCCCCcEEEEEe-----------CCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEE
Q 003271          639 H------STTVMSLDFHPSKEDLLCSCD-----------NNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRIL  696 (835)
Q Consensus       639 h------~~~V~sl~fsp~g~~ll~sgs-----------~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll  696 (835)
                      .      ...+..++|+|+|+.++++..           .++.+.+||..+++....+.     ..+..+.+++++..++
T Consensus        81 ~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (346)
T d1jmxb_          81 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYV  160 (346)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSCEEE
T ss_pred             cccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCEEEE
Confidence            1      124567899999987766542           47789999998876554332     2355566666655443


Q ss_pred             EEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEE--------------------------EEEe-CCeEEEEE
Q 003271          697 AAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYL--------------------------ASVS-DELVRVWS  749 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~L--------------------------asgs-Dg~I~IwD  749 (835)
                       .  ++.+.+||+.+++.+..+..+. ....+.++|++..+                          +++. +..+.+||
T Consensus       161 -~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (346)
T d1jmxb_         161 -A--GPDIYKMDVKTGKYTVALPLRN-WNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVD  236 (346)
T ss_dssp             -E--SSSEEEECTTTCCEEEEECSTT-CCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEE
T ss_pred             -e--CCcceEEEccCCCEEEEEecCC-CccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEE
Confidence             3  4678999999998888776432 23333444443322                          2222 45678888


Q ss_pred             cCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCC
Q 003271          750 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDK  829 (835)
Q Consensus       750 l~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG  829 (835)
                      +.++.  ........+...+..+.+++++.++++... +.|++||..+++.+....+...+.+++|+|||++|++++.||
T Consensus       237 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~v~d~~~~~~~~~~~~~~~~~~va~s~DG~~l~v~~~d~  313 (346)
T d1jmxb_         237 LKTGK--THTQEFADLTELYFTGLRSPKDPNQIYGVL-NRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFN  313 (346)
T ss_dssp             TTTCC--EEEEEEEECSSCEEEEEECSSCTTEEEEEE-SEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSS
T ss_pred             CCCCc--eEEEEeecccceeEEEEEeCCCCEEEEecC-CeEEEEECCCCcEEEEEcCCCCEEEEEEcCCCCEEEEEeCCC
Confidence            87763  234445567788899999999988776654 579999999999887666777899999999999999999999


Q ss_pred             cEEEeC
Q 003271          830 CVKIWK  835 (835)
Q Consensus       830 ~V~IWd  835 (835)
                      .|+|||
T Consensus       314 ~v~v~D  319 (346)
T d1jmxb_         314 DLAVFN  319 (346)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            999997

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.85  E-value=9.4e-20  Score=192.77  Aligned_cols=266  Identities=12%  Similarity=0.109  Sum_probs=198.3

Q ss_pred             cEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec--CCCCCEEEEEEeCCCCEE-EEEeCCCeEEEEE
Q 003271          507 RFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP--ASTSKVESCHFSPDGKLL-ATGGHDKKAVLWC  583 (835)
Q Consensus       507 ~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~--gH~~~V~sl~fSpdg~~L-asgs~Dg~I~VWd  583 (835)
                      +++++++.|+.|.+|+....                   +.+..+.  .+...+.+++|+|||++| ++++.++.|.+||
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~-------------------~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D   62 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKM-------------------AVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID   62 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTT-------------------EEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             eEEEEEcCCCEEEEEECCCC-------------------eEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEE
Confidence            57899999999999944322                   2333443  345668899999999987 4667899999999


Q ss_pred             cCCCeEEEEeccCCC-----CeEEEEECCCCCEEEEEEC------------CCeEEEEecCCCCceeEEeecCCCCeEEE
Q 003271          584 TESFTVKSTLEEHTQ-----WITDVRFSPSLSRLATSSA------------DRTVRVWDTENPDYSLRTFTGHSTTVMSL  646 (835)
Q Consensus       584 ~~t~~~i~~l~~h~~-----~V~sv~fspdg~~Latgs~------------Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl  646 (835)
                      +.+++.+..+..+..     .+..++|+|++++++++..            +..+.+||..+... ...+. +...+.++
T Consensus        63 ~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-~~~~~-~~~~~~~~  140 (337)
T d1pbyb_          63 LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSR-RKAFE-APRQITML  140 (337)
T ss_dssp             TTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEE-EEEEE-CCSSCCCE
T ss_pred             CCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeE-EEecc-ccCCceEE
Confidence            999999988866543     4567999999999988763            57889999998663 44444 44668899


Q ss_pred             EEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCC----------CEE--------------EEEEc
Q 003271          647 DFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRL----------GRI--------------LAAAI  700 (835)
Q Consensus       647 ~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~----------~~l--------------l~~s~  700 (835)
                      +|+|+++.+++ ++  +.+.+||..+++....+...  .....+.+++          ..+              .....
T Consensus       141 ~~s~dg~~l~~-~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  217 (337)
T d1pbyb_         141 AWARDGSKLYG-LG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAY  217 (337)
T ss_dssp             EECTTSSCEEE-ES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGE
T ss_pred             EEcCCCCEEEE-Ec--CCcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeeccc
Confidence            99999986664 43  46889999999887766422  1111111111          111              11122


Q ss_pred             CCcEEEEECCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCC
Q 003271          701 ENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFP  779 (835)
Q Consensus       701 dg~I~IwDl~t~~~i~-~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~  779 (835)
                      ++.+.+||..++.... .+..+...+.++.+++++.+++++ ++.|++||+.++   +.+..+. +...+.+++|+|+|+
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~---~~~~~~~-~~~~~~~~~~s~dG~  292 (337)
T d1pbyb_         218 RTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKN---ASIKRVP-LPHSYYSVNVSTDGS  292 (337)
T ss_dssp             EEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTT---EEEEEEE-CSSCCCEEEECTTSC
T ss_pred             CccEEEEEcCCCcEEEEEecCCCcceEEEEecccceEEEEc-cccEEEEECCCC---cEEEEEc-CCCCEEEEEECCCCC
Confidence            3468999999886554 355577888899999999988755 689999999988   6666664 456788999999999


Q ss_pred             EEEEEEcCCeEEEEEcCCCcEE
Q 003271          780 SLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       780 ~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      +|++++.++.|+|||+.+++.+
T Consensus       293 ~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         293 TVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             EEEEESBSSEEEEEETTTCCEE
T ss_pred             EEEEEeCCCcEEEEECCCCcEE
Confidence            9999999999999999999877

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=6.1e-20  Score=204.95  Aligned_cols=263  Identities=9%  Similarity=-0.010  Sum_probs=193.4

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee----EEeecCCCCeE
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----RTFTGHSTTVM  644 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~----~~~~~h~~~V~  644 (835)
                      ++++.+.||+|+|||+.+++++.++..|. .+..++|+|||++|++++.|++|++||+.+++...    ....+|...+.
T Consensus        34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~  112 (426)
T d1hzua2          34 FSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVES  112 (426)
T ss_dssp             EEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEE
T ss_pred             EEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEE
Confidence            56778889999999999999999998775 58999999999999999999999999999876422    22235556677


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--------------ceEEEEecCCCEEEEEEcC-CcEEEEEC
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--------------ATQMRFQPRLGRILAAAIE-NYISILDV  709 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--------------i~~l~fsp~~~~ll~~s~d-g~I~IwDl  709 (835)
                      +++|+|||+++++++..++.+++||..++.+...+...              ...+.+++++..++....+ +.+.+++.
T Consensus       113 s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~  192 (426)
T d1hzua2         113 SKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNY  192 (426)
T ss_dssp             CCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEEC
T ss_pred             eeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEe
Confidence            78888999988888889999999999999887665422              2345566666666655554 45666665


Q ss_pred             CCCeE-EEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecC--CCceEEEEEeCCCC-EEEE
Q 003271          710 ETQVC-RLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCT--GNKFHSCVFHPTFP-SLLV  783 (835)
Q Consensus       710 ~t~~~-i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~--~~~V~sv~fspdg~-~L~s  783 (835)
                      ..... .....++...+..+.|+|++++++++.  +..+.+|+..++   ..+......  ........+...+. .+++
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (426)
T d1hzua2         193 KDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDR---RLSALVDVGKTPHPGRGANFVHPKYGPVWS  269 (426)
T ss_dssp             SSSSSCEEEEEECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTT---EEEEEEECSSCCCCSCCEEEEETTTEEEEE
T ss_pred             ccccceeeEEeccCCccEeeeECCCCcEEEeeeecccceeeeecccc---cEEEEeccCCcccccceeeeecCCCCceEE
Confidence            54432 223335778899999999999998887  668999999887   444443322  22222333333322 2222


Q ss_pred             --EEcCCeEEEEEcCCC-------cEE-EeccCCCCeeEEEEeCCCCEEEE-------EECCCcEEEeC
Q 003271          784 --IGCYETLELWNMTEN-------KTL-TLSAHDKLVSSLAASTVNGMVAS-------ASHDKCVKIWK  835 (835)
Q Consensus       784 --gs~dg~I~IwDl~~~-------~~~-~l~~h~~~V~~la~spdg~~LaS-------gs~DG~V~IWd  835 (835)
                        .+.++.+.+|+....       +.. .+.+|...+..++|+||+++|++       ++.|++|+|||
T Consensus       270 ~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd  338 (426)
T d1hzua2         270 TSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFD  338 (426)
T ss_dssp             EECTTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEE
T ss_pred             eccCCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEE
Confidence              234668888876543       333 78899999999999999999994       55688999997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=3.1e-19  Score=200.27  Aligned_cols=230  Identities=10%  Similarity=-0.023  Sum_probs=168.6

Q ss_pred             eCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee----EEeecC
Q 003271          564 SPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL----RTFTGH  639 (835)
Q Consensus       564 Spdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~----~~~~~h  639 (835)
                      +++.-++++.+.||+|.|||..+++++..+..|. .+..++|+|||++|++++.|++|++||+.+++...    ....+|
T Consensus        29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~  107 (432)
T d1qksa2          29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEA  107 (432)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEE
T ss_pred             CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCC
Confidence            3333356889999999999999999999998774 69999999999999999999999999998766422    222345


Q ss_pred             CCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec--------------CceEEEEecCCCEEEEEEc-CCcE
Q 003271          640 STTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS--------------GATQMRFQPRLGRILAAAI-ENYI  704 (835)
Q Consensus       640 ~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~--------------~i~~l~fsp~~~~ll~~s~-dg~I  704 (835)
                      ...+.+..|+|||+++++++..++.|++||..+++++..+..              ....+.+++++..++++.. ++.|
T Consensus       108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i  187 (432)
T d1qksa2         108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKI  187 (432)
T ss_dssp             EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEE
T ss_pred             CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeE
Confidence            566667778899998989999999999999999998876542              2345788999988766654 5899


Q ss_pred             EEEECCCCeEEEEEc-CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec-----CCCceEEEEEeC
Q 003271          705 SILDVETQVCRLKLQ-GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC-----TGNKFHSCVFHP  776 (835)
Q Consensus       705 ~IwDl~t~~~i~~l~-~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~-----~~~~V~sv~fsp  776 (835)
                      .+||..+.+...... .+...+.++.|+|+|+++++++  ++.|.++|..+.   +.+..+..     +........+..
T Consensus       188 ~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~  264 (432)
T d1qksa2         188 LLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEG---KLVAIEDTGGQTPHPGRGANFVHPT  264 (432)
T ss_dssp             EEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTT---EEEEEEECSSSSBCCTTCEEEEETT
T ss_pred             EEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccc---eEEEEeccCccccccCcccceecCC
Confidence            999998876543322 3567789999999999988887  669999999876   33333221     222333334433


Q ss_pred             CCCEEEEEE-cCCeEEEEEcCC
Q 003271          777 TFPSLLVIG-CYETLELWNMTE  797 (835)
Q Consensus       777 dg~~L~sgs-~dg~I~IwDl~~  797 (835)
                      .+....+.. .++.|.+|+...
T Consensus       265 ~g~~~~~~~lg~~~v~~~~~~~  286 (432)
T d1qksa2         265 FGPVWATSHMGDDSVALIGTDP  286 (432)
T ss_dssp             TEEEEEEEBSSSSEEEEEECCT
T ss_pred             CCceecccccCCceEEeccccc
Confidence            333333322 245666666543

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.83  E-value=4e-19  Score=188.58  Aligned_cols=273  Identities=9%  Similarity=0.041  Sum_probs=199.7

Q ss_pred             ccCCCcEEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEec-CCCCCEEEEEEeCCCCEEE-EEeCCCeE
Q 003271          502 LTDMDRFVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIP-ASTSKVESCHFSPDGKLLA-TGGHDKKA  579 (835)
Q Consensus       502 ~~~~~~~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~-gH~~~V~sl~fSpdg~~La-sgs~Dg~I  579 (835)
                      +...++++++++.|+.|.+|+....                   +.++++. .|...+.+++|+|||++|+ ++..++.|
T Consensus         4 ~~~~~~~l~~~~~~~~v~v~D~~t~-------------------~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v   64 (346)
T d1jmxb_           4 LKAGHEYMIVTNYPNNLHVVDVASD-------------------TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDI   64 (346)
T ss_dssp             CCTTCEEEEEEETTTEEEEEETTTT-------------------EEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEE
T ss_pred             CCCCCcEEEEEcCCCEEEEEECCCC-------------------CEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcE
Confidence            4556789999999999999944222                   3345554 4566788999999999874 55578999


Q ss_pred             EEEEcCCCeEEEEeccCC------CCeEEEEECCCCCEEEEEE------------CCCeEEEEecCCCCceeE-EeecCC
Q 003271          580 VLWCTESFTVKSTLEEHT------QWITDVRFSPSLSRLATSS------------ADRTVRVWDTENPDYSLR-TFTGHS  640 (835)
Q Consensus       580 ~VWd~~t~~~i~~l~~h~------~~V~sv~fspdg~~Latgs------------~Dg~I~IWDl~t~~~~~~-~~~~h~  640 (835)
                      ++||+.+++.+..+....      ..+..++|+|||+++++++            .+..+.+||..++..... ......
T Consensus        65 ~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  144 (346)
T d1jmxb_          65 YGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP  144 (346)
T ss_dssp             EEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC
T ss_pred             EEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeecc
Confidence            999999999987775332      2456899999999998775            467889999887654211 111123


Q ss_pred             CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC--ceEEEEecCCC-------------------------
Q 003271          641 TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG--ATQMRFQPRLG-------------------------  693 (835)
Q Consensus       641 ~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~-------------------------  693 (835)
                      ..+..+.+++++. ++++   +..+.+|++.+++.+..+..+  ...+.++|++.                         
T Consensus       145 ~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (346)
T d1jmxb_         145 RQVYLMRAADDGS-LYVA---GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDK  220 (346)
T ss_dssp             SSCCCEEECTTSC-EEEE---SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC----
T ss_pred             CceEEEEecCCCE-EEEe---CCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCc
Confidence            4566666777654 4433   356899999998887766422  22233333322                         


Q ss_pred             -EEEEEEcCCcEEEEECCCCeEEE-EEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEE
Q 003271          694 -RILAAAIENYISILDVETQVCRL-KLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHS  771 (835)
Q Consensus       694 -~ll~~s~dg~I~IwDl~t~~~i~-~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~s  771 (835)
                       .+.++..+..+.+||+.++.... .+..|...+.++.+++++.+++...++.|++||+.++   +.+..+. +...+.+
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~---~~~~~~~-~~~~~~~  296 (346)
T d1jmxb_         221 QDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQR---KLIKAAN-LDHTYYC  296 (346)
T ss_dssp             ---CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEEESEEEEEETTTT---EEEEEEE-CSSCCCE
T ss_pred             eeEeeccCCceEEEEECCCCceEEEEeecccceeEEEEEeCCCCEEEEecCCeEEEEECCCC---cEEEEEc-CCCCEEE
Confidence             22233445678889998876554 3456788899999999999998888889999999887   6666655 4567899


Q ss_pred             EEEeCCCCEEEEEEcCCeEEEEEcCCCcEE
Q 003271          772 CVFHPTFPSLLVIGCYETLELWNMTENKTL  801 (835)
Q Consensus       772 v~fspdg~~L~sgs~dg~I~IwDl~~~~~~  801 (835)
                      ++|+|||++|++++.++.|+|||+.+++.+
T Consensus       297 va~s~DG~~l~v~~~d~~v~v~D~~t~~~i  326 (346)
T d1jmxb_         297 VAFDKKGDKLYLGGTFNDLAVFNPDTLEKV  326 (346)
T ss_dssp             EEECSSSSCEEEESBSSEEEEEETTTTEEE
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEECccCCEE
Confidence            999999999999999999999999999988

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=1.2e-17  Score=180.59  Aligned_cols=279  Identities=11%  Similarity=0.027  Sum_probs=204.5

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEe-----CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC---------
Q 003271          552 PASTSKVESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA---------  617 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~---------  617 (835)
                      ..|.+++.+++++|||+.+++..     .++.|.+||..+++.+.++..+...  .++|+|||++|++++.         
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~   94 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGK   94 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccc
Confidence            36888999999999999987642     3467999999999999998766544  7999999999998753         


Q ss_pred             -CCeEEEEecCCCCceeEEeecCCCCe-------EEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEeecCceEEEE
Q 003271          618 -DRTVRVWDTENPDYSLRTFTGHSTTV-------MSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKSGATQMRF  688 (835)
Q Consensus       618 -Dg~I~IWDl~t~~~~~~~~~~h~~~V-------~sl~fsp~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~~~i~~l~f  688 (835)
                       ++.|.|||+.+++. +..+..+....       ..+.|+++++.+++.. ..++.+.+|+....+...... ...++.+
T Consensus        95 ~~~~v~v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  172 (373)
T d2madh_          95 RTDYVEVFDPVTFLP-IADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS-SPTCYHI  172 (373)
T ss_pred             cceEEEEEECCCCcE-EEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec-cceeEEE
Confidence             57899999998774 44444444332       4577888887665544 456788999998877655544 3567889


Q ss_pred             ecCCCEE-EEEEcCCcEEEEECCCCeEEEEEcCC------CCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEE
Q 003271          689 QPRLGRI-LAAAIENYISILDVETQVCRLKLQGH------KNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHE  761 (835)
Q Consensus       689 sp~~~~l-l~~s~dg~I~IwDl~t~~~i~~l~~h------~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~  761 (835)
                      ++++..+ ++.+.|+.+.+||...+........+      ......+.+++++.+++.+.++.+++|+...... ..+..
T Consensus       173 s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~  251 (373)
T d2madh_         173 HPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGA-TNKAP  251 (373)
T ss_pred             ecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEEEecCCceEEEEEcCCCeE-EEEEe
Confidence            9998765 56778999999999988776655432      2234456677777777666689999999887532 11111


Q ss_pred             eecC----------CCceEEEEEeCCCCEEE----------EEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC-
Q 003271          762 LSCT----------GNKFHSCVFHPTFPSLL----------VIGCYETLELWNMTENKTLTLSAHDKLVSSLAASTVNG-  820 (835)
Q Consensus       762 l~~~----------~~~V~sv~fspdg~~L~----------sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~-  820 (835)
                      ....          ......+++++++..++          +...++.|.+||+.+++.+....+...+.+++|+|||+ 
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~spDG~~  331 (373)
T d2madh_         252 IDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISVAQDGGP  331 (373)
T ss_pred             eccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEECCCCCE
Confidence            1111          12334456666665544          44556689999999999997778888999999999998 


Q ss_pred             -EEEEEECCCcEEEeC
Q 003271          821 -MVASASHDKCVKIWK  835 (835)
Q Consensus       821 -~LaSgs~DG~V~IWd  835 (835)
                       ++++++.|+.|+|||
T Consensus       332 ~l~vt~~~d~~v~v~D  347 (373)
T d2madh_         332 DLYALSAGTEVLHIYD  347 (373)
T ss_pred             EEEEEeCCCCeEEEEE
Confidence             457889999999997

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=1.3e-17  Score=176.52  Aligned_cols=277  Identities=12%  Similarity=0.094  Sum_probs=196.1

Q ss_pred             EEEeccCCCCEEEeecCCCCCCCcccccccccCCCceeEEEEEecCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEcCC
Q 003271          508 FVDDGSLDDNVESFLSPDDADPRDRVGRSAEVGKGFTFTEFQLIPASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTES  586 (835)
Q Consensus       508 ~l~tGs~D~~i~~~ls~~~~~~~~~~~~~~~~~~g~~~~~i~~l~gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t  586 (835)
                      ++++++.|+.|++|.....                ..+..+.. -.|.+.|.+|+|+|||++|++++ .|+.|++|++..
T Consensus         6 v~v~~~~~~~I~v~~~~~~----------------~~l~~~~~-~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~   68 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHE----------------GALTLTQV-VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP   68 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTT----------------SCEEEEEE-EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             EEEECCCCCcEEEEEEcCC----------------CCeEEEEE-EcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeC
Confidence            4577789999999943322                11222333 35778899999999999986655 589999999876


Q ss_pred             CeEEEE---eccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCce-eEEeecCCCCeEEEEEcCCCCcEEEEEeC
Q 003271          587 FTVKST---LEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDN  661 (835)
Q Consensus       587 ~~~i~~---l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~  661 (835)
                      ......   ...+...+..++|+|||++|++++. ++.|.+|+....... ......+...+.++.++|+++.+++....
T Consensus        69 ~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~  148 (333)
T d1ri6a_          69 DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALK  148 (333)
T ss_dssp             TTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGG
T ss_pred             CCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccc
Confidence            532222   2234556788999999999999886 678999998765432 23345567788999999999988877777


Q ss_pred             CCcEEEEECCCCeeeeEe-----e----cCceEEEEecCCCEEEEEEc-CCcEEEEECCCC----eEEEEEc------CC
Q 003271          662 NSEIRYWSINNGSCAGVF-----K----SGATQMRFQPRLGRILAAAI-ENYISILDVETQ----VCRLKLQ------GH  721 (835)
Q Consensus       662 Dg~I~iwDl~s~~~~~~~-----~----~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~----~~i~~l~------~h  721 (835)
                      +..|.+|+..........     .    .....++|++++..++.... .+...+++....    .....+.      ..
T Consensus       149 ~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~  228 (333)
T d1ri6a_         149 QDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSD  228 (333)
T ss_dssp             GTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCS
T ss_pred             cceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCc
Confidence            888999998765433211     1    22467999999998877765 467778876532    2222221      12


Q ss_pred             CCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEE--EcC
Q 003271          722 KNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELW--NMT  796 (835)
Q Consensus       722 ~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~Iw--Dl~  796 (835)
                      ......+++++++++++...  ++.+.+|++........+.........+..++|+|+|++|++++. ++.|.+|  |..
T Consensus       229 ~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~~  308 (333)
T d1ri6a_         229 TRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVGE  308 (333)
T ss_dssp             CCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEETT
T ss_pred             cccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEECC
Confidence            34567789999999888776  779999999876444444444455667888999999999888875 4689998  456


Q ss_pred             CCcEE
Q 003271          797 ENKTL  801 (835)
Q Consensus       797 ~~~~~  801 (835)
                      ++++.
T Consensus       309 tG~l~  313 (333)
T d1ri6a_         309 QGLLH  313 (333)
T ss_dssp             TTEEE
T ss_pred             CCcEE
Confidence            66654

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.82  E-value=9.5e-18  Score=177.58  Aligned_cols=267  Identities=10%  Similarity=0.189  Sum_probs=191.9

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEE--EEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCCCCceeE--EeecCCCCe
Q 003271          569 LLATGGHDKKAVLWCTESFTVK--STLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTENPDYSLR--TFTGHSTTV  643 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i--~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t~~~~~~--~~~~h~~~V  643 (835)
                      .+++++.|++|+||++++...+  .....|.+.|.+|+|+|||++|++++. |+.|++|++........  ....+...+
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            4577789999999998754322  222358889999999999999966654 89999999987654222  223345667


Q ss_pred             EEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcC-CcEEEEECCCCeEEE-
Q 003271          644 MSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIE-NYISILDVETQVCRL-  716 (835)
Q Consensus       644 ~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~-  716 (835)
                      ..++|+|+|+.+++++..++.|.+|+...........     ..+.++.++|++.++++++.+ ..|.+|+........ 
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~  165 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVA  165 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEE
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCccee
Confidence            8899999999888777778899999988766544332     347789999999999888865 679999987642221 


Q ss_pred             -----EEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCc-ceEEEee------cCCCceEEEEEeCCCCEEE
Q 003271          717 -----KLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKG-ECIHELS------CTGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       717 -----~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~-~~i~~l~------~~~~~V~sv~fspdg~~L~  782 (835)
                           ...........++|++++.+++...  .+...+|++...... .....+.      ........+++++++++++
T Consensus       166 ~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~  245 (333)
T d1ri6a_         166 QDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLY  245 (333)
T ss_dssp             EEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEE
T ss_pred             eeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccceeEEEecccCcee
Confidence                 1223456678999999999988776  668888887654321 1222221      1234567789999999887


Q ss_pred             EEEc-CCeEEEEEcCCCcEE----EeccCCCCeeEEEEeCCCCEEEEEE-CCCcEEEeC
Q 003271          783 VIGC-YETLELWNMTENKTL----TLSAHDKLVSSLAASTVNGMVASAS-HDKCVKIWK  835 (835)
Q Consensus       783 sgs~-dg~I~IwDl~~~~~~----~l~~h~~~V~~la~spdg~~LaSgs-~DG~V~IWd  835 (835)
                      +... ++.+.+|++......    ....+...+.+++|+|||++|++++ .++.|+||+
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~  304 (333)
T d1ri6a_         246 ACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYE  304 (333)
T ss_dssp             EEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEE
T ss_pred             eecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEE
Confidence            7765 568999988654322    3334556788999999999877765 568899984

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.9e-17  Score=177.36  Aligned_cols=274  Identities=10%  Similarity=0.052  Sum_probs=187.7

Q ss_pred             EEEEEEeCCCCEEEEEe-----CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CCCeEE
Q 003271          558 VESCHFSPDGKLLATGG-----HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------ADRTVR  622 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs-----~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~Dg~I~  622 (835)
                      +.-.+.+||++.+++..     .+..|.+||..+++.+.++..+...  .++|+|||++|++++          .|+.|+
T Consensus         4 ~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           4 RILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             cEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            33346689999987754     3567999999999999988766544  799999999887654          478999


Q ss_pred             EEecCCCCceeEEeecCC-------CCeEEEEEcCCCCcEEEEE-eCCCcEEEEECCCCeeeeEeecCceEEEEecCCCE
Q 003271          623 VWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSC-DNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGR  694 (835)
Q Consensus       623 IWDl~t~~~~~~~~~~h~-------~~V~sl~fsp~g~~ll~sg-s~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~  694 (835)
                      +||+.+++. +..+..+.       .....++|+++++.+++.. +.+..+.+|+..+++.+..+..+.....+......
T Consensus        82 v~D~~t~~~-~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (355)
T d2bbkh_          82 VFDPVTLLP-TADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDT  160 (355)
T ss_dssp             EECTTTCCE-EEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTE
T ss_pred             EEECCCCCE-EEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcc
Confidence            999998774 34333222       2345689999998776544 45678999999999988877654333332223334


Q ss_pred             EEEEEcCCcEEEEECCCCeEEEEE------cCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecC--
Q 003271          695 ILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCT--  765 (835)
Q Consensus       695 ll~~s~dg~I~IwDl~t~~~i~~l------~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~--  765 (835)
                      .++.+.|+...++..........+      ..+...+.+..+.+++..++.++ ++.+++|++..+.. ..+.....+  
T Consensus       161 ~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~  239 (355)
T d2bbkh_         161 FFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDA-KFLPAVEALTE  239 (355)
T ss_dssp             EEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSC-EECCCEESSCH
T ss_pred             eEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcE-EEEeccCCccc
Confidence            444444544444443322111111      12334455667888888888877 89999999987632 112111111  


Q ss_pred             --------CCceEEEEEeCCCCEEEEEEcC----------CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC--EEEEE
Q 003271          766 --------GNKFHSCVFHPTFPSLLVIGCY----------ETLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVASA  825 (835)
Q Consensus       766 --------~~~V~sv~fspdg~~L~sgs~d----------g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~--~LaSg  825 (835)
                              ......+++++++..+++...+          ..|.+||..+++.+....+...+.+++|+|||+  +++++
T Consensus       240 ~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~  319 (355)
T d2bbkh_         240 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALS  319 (355)
T ss_dssp             HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEE
T ss_pred             ceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEE
Confidence                    1223457899999988877654          379999999999885555667799999999997  45677


Q ss_pred             ECCCcEEEeC
Q 003271          826 SHDKCVKIWK  835 (835)
Q Consensus       826 s~DG~V~IWd  835 (835)
                      +.|+.|+|||
T Consensus       320 ~~d~~i~v~D  329 (355)
T d2bbkh_         320 TGDKTLYIHD  329 (355)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            7899999997

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.74  E-value=4.1e-15  Score=160.41  Aligned_cols=260  Identities=9%  Similarity=0.008  Sum_probs=185.1

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccCCCCe-------EEEEECCCC
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQWI-------TDVRFSPSL  609 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h~~~V-------~sv~fspdg  609 (835)
                      .+..+..+...  .++|+|||++|++++          .++.|.|||+.+++.+..+..+....       ..+.|++++
T Consensus        59 ~~~~~~~~~~~--~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg  136 (373)
T d2madh_          59 ILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNN  136 (373)
T ss_pred             EEEEEeCCCCc--cEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCC
Confidence            34445555543  699999999998875          35789999999999998887666544       446788888


Q ss_pred             CEEEEEEC--CCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC-----
Q 003271          610 SRLATSSA--DRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG-----  682 (835)
Q Consensus       610 ~~Latgs~--Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~-----  682 (835)
                      +.++....  ++.+.+|+....+.     ..+...+.++.|+|+++.++++.+.|+.+.+|+...++........     
T Consensus       137 ~~~~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~  211 (373)
T d2madh_         137 ADLLFFQFAAGPAVGLVVQGGSSD-----DQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAA  211 (373)
T ss_pred             CcEEEEEEcCCCceEEeeccCCeE-----EEEeccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccC
Confidence            87666543  56788888876542     2233456789999999999999999999999999988776654321     


Q ss_pred             ----ceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE--EEcCCC----------CCeEEEEEcCCCCEEEE-------
Q 003271          683 ----ATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCWNTSGEYLAS-------  739 (835)
Q Consensus       683 ----i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~--~l~~h~----------~~I~sl~fspdg~~Las-------  739 (835)
                          ...+.+.++ ..+++.+.++.+.+|+........  ....+.          .....+++++++..++.       
T Consensus       212 ~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~  290 (373)
T d2madh_         212 QNLLTQPAQANKS-GRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSA  290 (373)
T ss_pred             ccceeeeEEECCC-ceEEEecCCceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCce
Confidence                222334443 456667778899999988765432  222111          22334566666655442       


Q ss_pred             ---Ee-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE--EEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeE
Q 003271          740 ---VS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--LLVIGCYETLELWNMTENKTL-TLSAHDKLVSS  812 (835)
Q Consensus       740 ---gs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~--L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~  812 (835)
                         .. ++.|.+||..++   +.+..+. +...+..++|+|||+.  +++++.++.|+|||+.+++.+ .+..+......
T Consensus       291 ~~~~~~~~~v~~~d~~t~---~~~~~~~-~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~  366 (373)
T d2madh_         291 WKLHAAAKEVTSVTGLVG---QTSSQIS-LGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQV  366 (373)
T ss_pred             EEeecCCCeEEEEECCCC---cEEEEec-CCCCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcE
Confidence               33 568999999888   5565554 5677899999999985  356778889999999999998 56668888888


Q ss_pred             EEEeCC
Q 003271          813 LAASTV  818 (835)
Q Consensus       813 la~spd  818 (835)
                      |++..+
T Consensus       367 l~~~~~  372 (373)
T d2madh_         367 LSVMNE  372 (373)
T ss_pred             EEEecC
Confidence            887653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.67  E-value=4e-15  Score=158.91  Aligned_cols=262  Identities=10%  Similarity=0.079  Sum_probs=177.3

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEE----------eCCCeEEEEEcCCCeEEEEeccCCC-------CeEEEEECCCCC
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATG----------GHDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLS  610 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasg----------s~Dg~I~VWd~~t~~~i~~l~~h~~-------~V~sv~fspdg~  610 (835)
                      +..+..+..  ..++|||||++|+++          ..|+.|++||+.+++.+..+..+..       ....++|+++++
T Consensus        41 ~~~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  118 (355)
T d2bbkh_          41 IGMIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGK  118 (355)
T ss_dssp             EEEEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSS
T ss_pred             EEEEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCC
Confidence            344444443  379999999988764          3478999999999999887754332       235689999999


Q ss_pred             EEEEEEC--CCeEEEEecCCCCceeEEeecCC-------CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec
Q 003271          611 RLATSSA--DRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS  681 (835)
Q Consensus       611 ~Latgs~--Dg~I~IWDl~t~~~~~~~~~~h~-------~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~  681 (835)
                      ++++++.  +..+.+|+..+++. +..+..+.       .....+.+++++..+++....++.+.+++.........  .
T Consensus       119 ~~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~--~  195 (355)
T d2bbkh_         119 TLLFYQFSPAPAVGVVDLEGKAF-KRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDE--F  195 (355)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEE-EEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTS--C
T ss_pred             eeEEecCCCCceeeeeecCCCcE-eeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccceec--c
Confidence            9888754  56899999988764 44443322       12234555666655555555555555555544322111  1


Q ss_pred             CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEE--EEcCCC----------CCeEEEEEcCCCCEEEEEe-C------
Q 003271          682 GATQMRFQPRLGRILAAAIENYISILDVETQVCRL--KLQGHK----------NQVHSVCWNTSGEYLASVS-D------  742 (835)
Q Consensus       682 ~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~--~l~~h~----------~~I~sl~fspdg~~Lasgs-D------  742 (835)
                      .+....+.+++..++.++.++.+++|++..+....  ....+.          .....+++++++..++... +      
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~  275 (355)
T d2bbkh_         196 LINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRH  275 (355)
T ss_dssp             BCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCT
T ss_pred             eeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceee
Confidence            24456778888999999999999999998775432  122111          2234578899999887765 2      


Q ss_pred             ----CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE--EEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEE
Q 003271          743 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS--LLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAA  815 (835)
Q Consensus       743 ----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~--L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~  815 (835)
                          +.|.+||..++   +.+..+.. ...+.+++|+|||+.  +++++.++.|+|||+.+++.+ .+..+......+.+
T Consensus       276 ~~~~~~v~v~d~~t~---~~~~~~~~-~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~  351 (355)
T d2bbkh_         276 KTASRFVVVLDAKTG---ERLAKFEM-GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITT  351 (355)
T ss_dssp             TSCEEEEEEEETTTC---CEEEEEEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEEC
T ss_pred             cCCCCeEEEEeCCCC---cEEEEecC-CCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEe
Confidence                37999999988   55555543 455789999999974  344556889999999999988 55567666666665


Q ss_pred             eCC
Q 003271          816 STV  818 (835)
Q Consensus       816 spd  818 (835)
                      ..+
T Consensus       352 ~d~  354 (355)
T d2bbkh_         352 ADM  354 (355)
T ss_dssp             CCC
T ss_pred             CCC
Confidence            543

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=1.2e-14  Score=157.61  Aligned_cols=277  Identities=10%  Similarity=-0.035  Sum_probs=188.8

Q ss_pred             CCCCEEEEEEeCCCCEEEE---EeCCC--eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE----------CC
Q 003271          554 STSKVESCHFSPDGKLLAT---GGHDK--KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS----------AD  618 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Las---gs~Dg--~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs----------~D  618 (835)
                      +.+....++..++++....   ...++  .|.+||..+++.+..+..+...  .++|+|||++|++++          .|
T Consensus        18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d   95 (368)
T d1mdah_          18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT   95 (368)
T ss_dssp             CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred             cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence            4455555667788875322   23334  5777799999999888777654  589999999998865          36


Q ss_pred             CeEEEEecCCCCceeEEeecCC-------CCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecC
Q 003271          619 RTVRVWDTENPDYSLRTFTGHS-------TTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPR  691 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~-------~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~  691 (835)
                      +.|.+||..+.+. +..+..+.       .....++|+|||++++++...++.|.+||+.+++.+..+..+.....+...
T Consensus        96 ~~v~v~D~~t~~~-~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~  174 (368)
T d1mdah_          96 DYVEVFDPVTFLP-IADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGA  174 (368)
T ss_dssp             EEEEEECTTTCCE-EEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEE
T ss_pred             CeEEEEECCCCcE-eeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceEccCC
Confidence            7899999998764 44333222       223468999999988877777899999999999998887654332222233


Q ss_pred             CCEEEEEEcCCcEEEEECCCCeEEEEE------cCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecC
Q 003271          692 LGRILAAAIENYISILDVETQVCRLKL------QGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCT  765 (835)
Q Consensus       692 ~~~ll~~s~dg~I~IwDl~t~~~i~~l------~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~  765 (835)
                      ...+++.+.||.+.++++.........      ..+...+..+.+.+++..+.. .++.++++++..... ..+......
T Consensus       175 ~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~-~~~~v~~~~~~~~~~-~~~~~~~~~  252 (368)
T d1mdah_         175 AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA-VASSILQGDIPAAGA-TMKAAIDGN  252 (368)
T ss_dssp             TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC-BSSCCEEEECCSSCC-EEECCCCSS
T ss_pred             CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe-cCCCEEEEeecCCce-EEEeecccc
Confidence            456667777888888887754332221      223445556777777765543 355677777665421 111111110


Q ss_pred             ----------CCceEEEEEeCCCCEEEEEEcCC---------eEEEEEcCCCcEEEeccCCCCeeEEEEeCCCC--EEEE
Q 003271          766 ----------GNKFHSCVFHPTFPSLLVIGCYE---------TLELWNMTENKTLTLSAHDKLVSSLAASTVNG--MVAS  824 (835)
Q Consensus       766 ----------~~~V~sv~fspdg~~L~sgs~dg---------~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~--~LaS  824 (835)
                                ......+++++++..+++...++         .|++||..+++.+....+...+.+++|+|||+  ++++
T Consensus       253 ~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s  332 (368)
T d1mdah_         253 ESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYAN  332 (368)
T ss_dssp             CTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEE
T ss_pred             cceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEE
Confidence                      11234578899998877765432         69999999999886666677899999999997  3566


Q ss_pred             EECCCcEEEeC
Q 003271          825 ASHDKCVKIWK  835 (835)
Q Consensus       825 gs~DG~V~IWd  835 (835)
                      +..|+.|+|||
T Consensus       333 ~~~~~~v~v~D  343 (368)
T d1mdah_         333 SAGTEVLDIYD  343 (368)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eCCCCeEEEEE
Confidence            77889999997

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=1.7e-13  Score=151.62  Aligned_cols=256  Identities=11%  Similarity=0.024  Sum_probs=181.8

Q ss_pred             EEEEeCCCeEEEEEcCCCeEEEEecc------------------------------CCCCeEEEEECCCCCEEEEEE-CC
Q 003271          570 LATGGHDKKAVLWCTESFTVKSTLEE------------------------------HTQWITDVRFSPSLSRLATSS-AD  618 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t~~~i~~l~~------------------------------h~~~V~sv~fspdg~~Latgs-~D  618 (835)
                      +++|+.+|.|+||++.+++.++++.-                              |...+....++|||++|++.. .+
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~~   93 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKAN   93 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCCC
Confidence            67788999999999999998888632                              223345555678999987765 57


Q ss_pred             CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcE------------------EEEECCCCeeeeEee
Q 003271          619 RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEI------------------RYWSINNGSCAGVFK  680 (835)
Q Consensus       619 g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I------------------~iwDl~s~~~~~~~~  680 (835)
                      .+|.++|+.+.+........+...+..++|+|+++..++++..+..+                  ..+|..+.+....+.
T Consensus        94 ~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~  173 (441)
T d1qnia2          94 TRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVI  173 (441)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEE
T ss_pred             CEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccceeeEEEe
Confidence            89999999987643333344667899999999988765555444433                  458888877766554


Q ss_pred             --cCceEEEEecCCCEEEEEEcCC-----------------------------------------cEEEEECCCCeEEEE
Q 003271          681 --SGATQMRFQPRLGRILAAAIEN-----------------------------------------YISILDVETQVCRLK  717 (835)
Q Consensus       681 --~~i~~l~fsp~~~~ll~~s~dg-----------------------------------------~I~IwDl~t~~~i~~  717 (835)
                        .....+.++|+++++++.+.+.                                         .+.+++......+..
T Consensus       174 v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~  253 (441)
T d1qnia2         174 VDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRY  253 (441)
T ss_dssp             ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEE
T ss_pred             cCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEE
Confidence              4477899999999999887542                                         233333444444555


Q ss_pred             EcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCC--------CcceEEEeecCCCceEEEEEeCCCCEEEEEEcC
Q 003271          718 LQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGS--------KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       718 l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~--------~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                      +... .....+.++|||+++++++  +++|.|||+.+..        ...++.......-......|.++|..+.+...|
T Consensus       254 IPvg-ksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~d  332 (441)
T d1qnia2         254 IPVP-KNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFID  332 (441)
T ss_dssp             ECCB-SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTT
T ss_pred             EeCC-CCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEccccc
Confidence            5443 3357899999999998776  8999999986521        112333323333445667899999877777789


Q ss_pred             CeEEEEEcCC----------CcEE-Ee-----ccCCCCeeEEEEeCCCCEEEEEE
Q 003271          788 ETLELWNMTE----------NKTL-TL-----SAHDKLVSSLAASTVNGMVASAS  826 (835)
Q Consensus       788 g~I~IwDl~~----------~~~~-~l-----~~h~~~V~~la~spdg~~LaSgs  826 (835)
                      ..|..|++..          ..++ ++     .+|...+.+.+++|||++|++++
T Consensus       333 s~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         333 SQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS  387 (441)
T ss_dssp             TEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred             ceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence            9999999741          1222 33     57877888888999999999995

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.50  E-value=5.2e-13  Score=144.52  Aligned_cols=255  Identities=11%  Similarity=0.013  Sum_probs=167.4

Q ss_pred             EEEecCCCCCEEEEEEeCCCCEEEEEe----------CCCeEEEEEcCCCeEEEEeccCCC-------CeEEEEECCCCC
Q 003271          548 FQLIPASTSKVESCHFSPDGKLLATGG----------HDKKAVLWCTESFTVKSTLEEHTQ-------WITDVRFSPSLS  610 (835)
Q Consensus       548 i~~l~gH~~~V~sl~fSpdg~~Lasgs----------~Dg~I~VWd~~t~~~i~~l~~h~~-------~V~sv~fspdg~  610 (835)
                      +..+.++...  .++|+|||++|++.+          .|+.|.+||..+++.+..+..+..       ....++|+|||+
T Consensus        59 ~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk  136 (368)
T d1mdah_          59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             EEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCC
Confidence            3444555544  489999999988764          367899999999999888764432       234689999999


Q ss_pred             EEEEEE-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------
Q 003271          611 RLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------  680 (835)
Q Consensus       611 ~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------  680 (835)
                      +|+++. .++.|.+||+.+.+. ...+..+....    +.+.+...++..+.||.+.+|++..........         
T Consensus       137 ~l~va~~~~~~v~~~d~~~~~~-~~~~~~~~~~~----~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~  211 (368)
T d1mdah_         137 CLLFFLFGSSAAAGLSVPGASD-DQLTKSASCFH----IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQN  211 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEE-EEEEECSSCCC----CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSC
T ss_pred             EEEEEeCCCCeEEEEECCCCcE-eEEeeccCcce----EccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccc
Confidence            998886 469999999998764 44444443321    233445566777788888888886554332211         


Q ss_pred             cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEc--CCC----------CCeEEEEEcCCCCEEEEEe--C----
Q 003271          681 SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQ--GHK----------NQVHSVCWNTSGEYLASVS--D----  742 (835)
Q Consensus       681 ~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~--~h~----------~~I~sl~fspdg~~Lasgs--D----  742 (835)
                      .....+.+.+++..+  ....+.++++++..........  .+.          .....+++++++..++...  +    
T Consensus       212 ~~~~~~~~~~~g~~~--~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~  289 (368)
T d1mdah_         212 CSSQAAQANYPGMLV--WAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC  289 (368)
T ss_dssp             BCSCCEEETTTTEEE--ECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCT
T ss_pred             cceeecccccCcEEE--EecCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCcee
Confidence            123345556554333  3345667777776554433221  111          1223578889988776654  2    


Q ss_pred             ----CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCE-EE-EEEcCCeEEEEEcCCCcEEEeccCCCCeeEEEE
Q 003271          743 ----ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPS-LL-VIGCYETLELWNMTENKTLTLSAHDKLVSSLAA  815 (835)
Q Consensus       743 ----g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~-L~-sgs~dg~I~IwDl~~~~~~~l~~h~~~V~~la~  815 (835)
                          ..|.+||..++   +.+..+.. ...+..++|+|||+. |+ ++..++.|+|||..+++.+....-......|++
T Consensus       290 ~~~~~~v~v~D~~t~---~~~~~~~~-~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~~P~~l~~  364 (368)
T d1mdah_         290 LAAAENTSSVTASVG---QTSGPISN-GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGPESLSV  364 (368)
T ss_dssp             TSCEEEEEEEESSSC---CEEECCEE-EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCSCCCEEEC
T ss_pred             ecCCceEEEEECCCC---cEeEEecC-CCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCCCCCEEEE
Confidence                25999999988   55555543 456888999999974 44 445578999999999998854444444555554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.47  E-value=2.4e-12  Score=144.09  Aligned_cols=265  Identities=14%  Similarity=0.034  Sum_probs=157.8

Q ss_pred             ecCCCCCEEEEEEeCCCCEEEEEeC---------CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeE
Q 003271          551 IPASTSKVESCHFSPDGKLLATGGH---------DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTV  621 (835)
Q Consensus       551 l~gH~~~V~sl~fSpdg~~Lasgs~---------Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I  621 (835)
                      +..|...|.++.|||||++|+.++.         ++.+.|||+.+++. ..+..|...+..+.|+|||+.||.. .++.+
T Consensus        57 ~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~~~-~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l  134 (470)
T d2bgra1          57 FDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQL-ITEERIPNNTQWVTWSPVGHKLAYV-WNNDI  134 (470)
T ss_dssp             TTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE-CCSSCCCTTEEEEEECSSTTCEEEE-ETTEE
T ss_pred             hhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCCcc-cccccCCccccccccccCcceeeEe-ecccc
Confidence            4566788999999999999998753         56789999999874 4678899999999999999999996 46789


Q ss_pred             EEEecCCCCceeEEeec-----------------CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEEC--------------
Q 003271          622 RVWDTENPDYSLRTFTG-----------------HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSI--------------  670 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~-----------------h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl--------------  670 (835)
                      ++|+..++........+                 ..+....+.|+|||+.+++....+..|..|++              
T Consensus       135 ~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~~~~~~~~~~~~~~~~~  214 (470)
T d2bgra1         135 YVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTV  214 (470)
T ss_dssp             EEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEE
T ss_pred             eEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccccEECCCCCccceeEecCCcCceEEEEeeccCCCCCCeee
Confidence            99999877642222111                 12334568899999977765544443443332              


Q ss_pred             ---------------------CCCeeeeEee--------------cCceEEEEecCCCEEEEEEc-CC-----cEEEEEC
Q 003271          671 ---------------------NNGSCAGVFK--------------SGATQMRFQPRLGRILAAAI-EN-----YISILDV  709 (835)
Q Consensus       671 ---------------------~s~~~~~~~~--------------~~i~~l~fsp~~~~ll~~s~-dg-----~I~IwDl  709 (835)
                                           ..+.......              ..+..+.|.+++..++.... .+     .+..+|.
T Consensus       215 ~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~  294 (470)
T d2bgra1         215 RVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (470)
T ss_dssp             EEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             eeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecC
Confidence                                 2211110000              00245667777655544332 21     2344455


Q ss_pred             CCCeEEEEEc-------------CCCCCeEEEEEcCCC--CEEEEEe-CCe--EEEEEcCCCCCcceEEEeecCCCceEE
Q 003271          710 ETQVCRLKLQ-------------GHKNQVHSVCWNTSG--EYLASVS-DEL--VRVWSIGSGSKGECIHELSCTGNKFHS  771 (835)
Q Consensus       710 ~t~~~i~~l~-------------~h~~~I~sl~fspdg--~~Lasgs-Dg~--I~IwDl~t~~~~~~i~~l~~~~~~V~s  771 (835)
                      .++.......             .+...  ...|.+++  .+++... ||.  |++|+...+    ....+..+...|..
T Consensus       295 ~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~----~~~~lt~g~~~v~~  368 (470)
T d2bgra1         295 SSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKK----DCTFITKGTWEVIG  368 (470)
T ss_dssp             TTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCS----CCEESCCSSSCEEE
T ss_pred             CCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCC----ceeeeccCCeeEEE
Confidence            5555443211             01111  22344433  3344444 765  455555443    33444445566666


Q ss_pred             EEEeCCCCEEEEE-EcCC------eEEEEEcCCCcEE-E----eccCCCCeeEEEEeCCCCEEEE
Q 003271          772 CVFHPTFPSLLVI-GCYE------TLELWNMTENKTL-T----LSAHDKLVSSLAASTVNGMVAS  824 (835)
Q Consensus       772 v~fspdg~~L~sg-s~dg------~I~IwDl~~~~~~-~----l~~h~~~V~~la~spdg~~LaS  824 (835)
                      + +++++..++.. +.++      .|+-.++..+... .    +..|...+..++|||||++++.
T Consensus       369 ~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~s~~fSpdgky~~~  432 (470)
T d2bgra1         369 I-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKVTCLSCELNPERCQYYSVSFSKEAKYYQL  432 (470)
T ss_dssp             E-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCEEESSTTTSTTTBCBEEEEECTTSSEEEE
T ss_pred             E-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCceeEecccccCCCCCEEEEEECCCCCEEEE
Confidence            6 44455555443 3222      2555566654433 2    3467888999999999998763

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.34  E-value=2.8e-11  Score=135.11  Aligned_cols=137  Identities=16%  Similarity=0.129  Sum_probs=109.4

Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEec-----cCCCCeEEEEECCCCCEEEEEEC---------CCeEEEEe
Q 003271          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLE-----EHTQWITDVRFSPSLSRLATSSA---------DRTVRVWD  625 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~-----~h~~~V~sv~fspdg~~Latgs~---------Dg~I~IWD  625 (835)
                      .+.|.+|+.++..  .|+.|.+||+.+++....+.     .|...|.++.|+||+++|+.++.         ++.+.|||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            4779999987764  47889999999998876554     34578999999999999998853         56789999


Q ss_pred             cCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---------------------cCce
Q 003271          626 TENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---------------------SGAT  684 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---------------------~~i~  684 (835)
                      +.++.  +..+..|...+..+.|+|||+.++++  .++.+++|+..+++......                     ....
T Consensus        99 ~~~~~--~~~l~~~~~~~~~~~~SPDG~~ia~~--~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~  174 (470)
T d2bgra1          99 LNKRQ--LITEERIPNNTQWVTWSPVGHKLAYV--WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (470)
T ss_dssp             TTTTE--ECCSSCCCTTEEEEEECSSTTCEEEE--ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             CCCCc--ccccccCCccccccccccCcceeeEe--ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCcc
Confidence            99865  56678888999999999999977764  37889999999887654322                     1245


Q ss_pred             EEEEecCCCEEEEEEcCC
Q 003271          685 QMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~dg  702 (835)
                      .+.|+|+|.+|+....|.
T Consensus       175 ~~~wSPDGk~ia~~~~d~  192 (470)
T d2bgra1         175 ALWWSPNGTFLAYAQFND  192 (470)
T ss_dssp             CEEECTTSSEEEEEEEEC
T ss_pred             ccEECCCCCccceeEecC
Confidence            578999999999987653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.29  E-value=1.6e-09  Score=110.50  Aligned_cols=231  Identities=13%  Similarity=0.131  Sum_probs=157.4

Q ss_pred             eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCC---eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc
Q 003271          578 KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADR---TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED  654 (835)
Q Consensus       578 ~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg---~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~  654 (835)
                      .|+|.|.+..... .+..+...+...+|||||+.||....+.   .+.+.+.....  ...+..+...+....|+|++..
T Consensus        20 ~l~i~d~dG~~~~-~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~spdg~~   96 (269)
T d2hqsa1          20 ELRVSDYDGYNQF-VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA--VRQVASFPRHNGAPAFSPDGSK   96 (269)
T ss_dssp             EEEEEETTSCSCE-EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCC--EEEEECCSSCEEEEEECTTSSE
T ss_pred             EEEEEcCCCCCcE-EEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCc--eeEEeeeecccccceecCCCCe
Confidence            5777777644443 3334567788999999999998776543   46666666544  5566677888999999999998


Q ss_pred             EEEEEeCCCcEEEEE--CCCCeeeeEeec--CceEEEEecCCCEEEEEEc-CC--cEEEEECCCCeEEEEEcCCCCCeEE
Q 003271          655 LLCSCDNNSEIRYWS--INNGSCAGVFKS--GATQMRFQPRLGRILAAAI-EN--YISILDVETQVCRLKLQGHKNQVHS  727 (835)
Q Consensus       655 ll~sgs~Dg~I~iwD--l~s~~~~~~~~~--~i~~l~fsp~~~~ll~~s~-dg--~I~IwDl~t~~~i~~l~~h~~~I~s  727 (835)
                      +++....++...++.  ............  ......+++++..++..+. ++  .|.++++..+... .+..+......
T Consensus        97 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~  175 (269)
T d2hqsa1          97 LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQD  175 (269)
T ss_dssp             EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEE
T ss_pred             eeEeeecCCccceeecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccce-eeecccccccc
Confidence            887776565444433  333333332222  2344567777777666654 33  5666777766443 33345667778


Q ss_pred             EEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCC---eEEEEEcCCCcE
Q 003271          728 VCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYE---TLELWNMTENKT  800 (835)
Q Consensus       728 l~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg---~I~IwDl~~~~~  800 (835)
                      ..|+|+++.++..+  .+  .|.+++...+    .. .+...........|+|||+.|+..+..+   .|+++++..+..
T Consensus       176 ~~~spdg~~~~~~~~~~~~~~i~~~~~~~~----~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~  250 (269)
T d2hqsa1         176 ADVSSDGKFMVMVSSNGGQQHIAKQDLATG----GV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFK  250 (269)
T ss_dssp             EEECTTSSEEEEEEECSSCEEEEEEETTTC----CE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCE
T ss_pred             cccccccceeEEEeecCCceeeeEeecccc----cc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            89999999998877  44  4444454443    22 2333455667889999999988776543   799999999988


Q ss_pred             EEeccCCCCeeEEEEeC
Q 003271          801 LTLSAHDKLVSSLAAST  817 (835)
Q Consensus       801 ~~l~~h~~~V~~la~sp  817 (835)
                      ..+....+.+...+|+|
T Consensus       251 ~~lt~~~g~~~~p~WSP  267 (269)
T d2hqsa1         251 ARLPATDGQVKFPAWSP  267 (269)
T ss_dssp             EECCCSSSEEEEEEECC
T ss_pred             EEEeCCCCcEEeEEeCC
Confidence            88888888899999998

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.28  E-value=7.8e-11  Score=129.90  Aligned_cols=246  Identities=11%  Similarity=0.070  Sum_probs=164.8

Q ss_pred             cCCCCCEEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCeEEEEec-cCCCCeEEEEECCCCC--EEEEEECCC--------
Q 003271          552 PASTSKVESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLE-EHTQWITDVRFSPSLS--RLATSSADR--------  619 (835)
Q Consensus       552 ~gH~~~V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t~~~i~~l~-~h~~~V~sv~fspdg~--~Latgs~Dg--------  619 (835)
                      ..|...+.+..++|||++|++.. .++.|.++|++++++...+. .+...+..++|+|+++  +++..+.+.        
T Consensus        68 d~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          68 DCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             CBCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             cccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccc
Confidence            45666777888899999986664 67899999999999887764 3567899999999988  444444332        


Q ss_pred             ---------eEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC----------------------------
Q 003271          620 ---------TVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN----------------------------  662 (835)
Q Consensus       620 ---------~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D----------------------------  662 (835)
                               .+..+|..+.+.......  ...+..+.|+|+|+++++++...                            
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v--~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~  225 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIV--DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAA  225 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEE--SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEec--CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEE
Confidence                     234577776554323222  24578899999999888776432                            


Q ss_pred             ------------CcEEEEECCCCeeeeEeecC--ceEEEEecCCCEEEEEE-cCCcEEEEECCCCe-----------EEE
Q 003271          663 ------------SEIRYWSINNGSCAGVFKSG--ATQMRFQPRLGRILAAA-IENYISILDVETQV-----------CRL  716 (835)
Q Consensus       663 ------------g~I~iwDl~s~~~~~~~~~~--i~~l~fsp~~~~ll~~s-~dg~I~IwDl~t~~-----------~i~  716 (835)
                                  +.+.+++....+.+..+..+  ...+.++|+|+++++++ .+++|.+||+++..           ++.
T Consensus       226 ~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~  305 (441)
T d1qnia2         226 VKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIV  305 (441)
T ss_dssp             HHTTCCBCCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred             ecCCCEEEeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEE
Confidence                        34444444444445555432  56799999999987755 57999999986522           111


Q ss_pred             EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCC------CC-CcceEEEe-----ecCCCceEEEEEeCCCCEEEE
Q 003271          717 KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGS------GS-KGECIHEL-----SCTGNKFHSCVFHPTFPSLLV  783 (835)
Q Consensus       717 ~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t------~~-~~~~i~~l-----~~~~~~V~sv~fspdg~~L~s  783 (835)
                      -.....-......|+++|..+.+.. |..|..|++..      +. ....+..+     .+|...+.+.+++|+|++|++
T Consensus       306 ~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s  385 (441)
T d1qnia2         306 AEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV  385 (441)
T ss_dssp             ECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEE
T ss_pred             eecccccCcccceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEe
Confidence            1111222345568999998887777 99999999842      11 11244444     345555556678999999999


Q ss_pred             EEc---CC----------eEEEEEcCCCc
Q 003271          784 IGC---YE----------TLELWNMTENK  799 (835)
Q Consensus       784 gs~---dg----------~I~IwDl~~~~  799 (835)
                      ++.   |.          .-.++|+...+
T Consensus       386 ~~k~s~dr~~~~g~~~~~~~q~~~i~~~~  414 (441)
T d1qnia2         386 LSKFSKDRFLPVGPLHPENDQLIDISGEE  414 (441)
T ss_dssp             EESCCGGGSCCCSSSCCEEEEEEECSSSS
T ss_pred             cCccccccCcCCCCCCCccceeEEecCCe
Confidence            954   42          45677776544

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.19  E-value=1.2e-08  Score=110.28  Aligned_cols=245  Identities=10%  Similarity=0.026  Sum_probs=153.4

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCC-CeEEEEe-ccCCCCeEEEEECCCCCEEEEEE---CCCeEEEEecCC
Q 003271          554 STSKVESCHFSPDGKLLATGGHDKKAVLWCTES-FTVKSTL-EEHTQWITDVRFSPSLSRLATSS---ADRTVRVWDTEN  628 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t-~~~i~~l-~~h~~~V~sv~fspdg~~Latgs---~Dg~I~IWDl~t  628 (835)
                      +...+..|+|++++++|+++.. +.+..|.+.. +...... .........+.++++++.++...   ..+.|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccC
Confidence            4455677999999999988764 5677886653 3332221 12233456778888887543322   235555554432


Q ss_pred             CCcee----------------EEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCC-eee--eEee-----cCce
Q 003271          629 PDYSL----------------RTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNG-SCA--GVFK-----SGAT  684 (835)
Q Consensus       629 ~~~~~----------------~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~-~~~--~~~~-----~~i~  684 (835)
                      .....                .........+.++.|+|+|++++++......|.+|+.... ...  ....     .+..
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr  196 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR  196 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE
Confidence            11100                0111223357899999999988877766678999887543 222  1111     3477


Q ss_pred             EEEEecCCCEEEEEEc-CCcEEEEECCCCe--EEEEEc-----------------CCCCCeEEEEEcCCCCEEEEEe--C
Q 003271          685 QMRFQPRLGRILAAAI-ENYISILDVETQV--CRLKLQ-----------------GHKNQVHSVCWNTSGEYLASVS--D  742 (835)
Q Consensus       685 ~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~--~i~~l~-----------------~h~~~I~sl~fspdg~~Lasgs--D  742 (835)
                      .++|+|+++++++... ++.|.+|++....  .+....                 .+......+.++|+|++|+++.  +
T Consensus       197 ~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~  276 (365)
T d1jofa_         197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN  276 (365)
T ss_dssp             EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred             EEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccC
Confidence            8999999999888775 6889999987543  222111                 0112356789999999998875  3


Q ss_pred             C-----eEEEEEcCCCCCcc---eEEEeecCCCceEEEEEeC-CCCEEEEEEc-CCeEEEEEcCCCc
Q 003271          743 E-----LVRVWSIGSGSKGE---CIHELSCTGNKFHSCVFHP-TFPSLLVIGC-YETLELWNMTENK  799 (835)
Q Consensus       743 g-----~I~IwDl~t~~~~~---~i~~l~~~~~~V~sv~fsp-dg~~L~sgs~-dg~I~IwDl~~~~  799 (835)
                      .     .|.+|++.......   .+............++++| +|++|+++.. ++.|.+|+++...
T Consensus       277 ~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~  343 (365)
T d1jofa_         277 KFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF  343 (365)
T ss_dssp             STTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred             CCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence            3     37778876543211   1222223445667899998 7898888864 5699999876554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.17  E-value=6.2e-09  Score=112.59  Aligned_cols=265  Identities=9%  Similarity=0.081  Sum_probs=163.7

Q ss_pred             EEEEeC--CCeEEEE--EcCCCeEE--EEe-ccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEE-eecCCC
Q 003271          570 LATGGH--DKKAVLW--CTESFTVK--STL-EEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRT-FTGHST  641 (835)
Q Consensus       570 Lasgs~--Dg~I~VW--d~~t~~~i--~~l-~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~-~~~h~~  641 (835)
                      |++|+.  ++.|+++  |.+++++.  ... ......+..|+|++++++|+++.. +.+..|.+......... ......
T Consensus         5 l~vGtyt~~~~i~~~~fd~~~~~l~~~~~~~~~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~   83 (365)
T d1jofa_           5 LMIGTWTPPGAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGG   83 (365)
T ss_dssp             EEEEESSSSCEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCS
T ss_pred             EEEEeecCCCCEEEEEEcCCCCeEEEeeeeeccCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCC
Confidence            566653  4566554  45555442  221 234455678999999999988865 56888887754322211 122234


Q ss_pred             CeEEEEEcCCCCcEEEEEe--CCCcEEEEECCCC-e------------eeeEe-------ecCceEEEEecCCCEEEEEE
Q 003271          642 TVMSLDFHPSKEDLLCSCD--NNSEIRYWSINNG-S------------CAGVF-------KSGATQMRFQPRLGRILAAA  699 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs--~Dg~I~iwDl~s~-~------------~~~~~-------~~~i~~l~fsp~~~~ll~~s  699 (835)
                      ....+.++++++.++++..  ..+.|..+.+... .            .....       ..++.++.|+|++++++++.
T Consensus        84 ~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d  163 (365)
T d1jofa_          84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSAD  163 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEE
T ss_pred             CcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEee
Confidence            4567778888875544432  3455555544221 1            10000       12367899999999999887


Q ss_pred             cC-CcEEEEECCCC-eEE--EEE--cCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcce--EEEee------
Q 003271          700 IE-NYISILDVETQ-VCR--LKL--QGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGEC--IHELS------  763 (835)
Q Consensus       700 ~d-g~I~IwDl~t~-~~i--~~l--~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~--i~~l~------  763 (835)
                      .. +.|.+|+.... ...  ..+  .........++|+|+++++++..  ++.|.+|++........  +....      
T Consensus       164 ~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~  243 (365)
T d1jofa_         164 LTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGI  243 (365)
T ss_dssp             TTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTC
T ss_pred             CCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccc
Confidence            64 67888876532 221  222  22456789999999999988777  88999999976543211  11111      


Q ss_pred             --------cCCCceEEEEEeCCCCEEEEEEcC------CeEEEEEcCCCcEE-------EeccCCCCeeEEEEeC-CCCE
Q 003271          764 --------CTGNKFHSCVFHPTFPSLLVIGCY------ETLELWNMTENKTL-------TLSAHDKLVSSLAAST-VNGM  821 (835)
Q Consensus       764 --------~~~~~V~sv~fspdg~~L~sgs~d------g~I~IwDl~~~~~~-------~l~~h~~~V~~la~sp-dg~~  821 (835)
                              ........+.++|+|++|+++...      ..|..|++.....+       ..........+++++| +|++
T Consensus       244 ~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~  323 (365)
T d1jofa_         244 PDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPTSGGHSNAVSPCPWSDEW  323 (365)
T ss_dssp             CCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSSCCTTCCCEEECTTCTTE
T ss_pred             cccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEEcCCCCccEEEecCCCCCE
Confidence                    111235678999999999887542      24777877653222       1123345678899998 7887


Q ss_pred             EEEEE-CCCcEEEeC
Q 003271          822 VASAS-HDKCVKIWK  835 (835)
Q Consensus       822 LaSgs-~DG~V~IWd  835 (835)
                      |+.++ .++.|.||+
T Consensus       324 l~va~~~s~~v~v~~  338 (365)
T d1jofa_         324 MAITDDQEGWLEIYR  338 (365)
T ss_dssp             EEEECSSSCEEEEEE
T ss_pred             EEEEeCCCCeEEEEE
Confidence            76664 678899984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=1.5e-08  Score=106.18  Aligned_cols=234  Identities=10%  Similarity=0.062  Sum_probs=158.7

Q ss_pred             EEEEecCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEec
Q 003271          547 EFQLIPASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDT  626 (835)
Q Consensus       547 ~i~~l~gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl  626 (835)
                      .+..+...+ .+..++++|||+++++...+++|..|+....  ...+......+.+++|.++|+++++...++.+.+|+.
T Consensus        20 v~~~~p~~~-~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~--~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~   96 (302)
T d2p4oa1          20 IITSFPVNT-FLENLASAPDGTIFVTNHEVGEIVSITPDGN--QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL   96 (302)
T ss_dssp             EEEEECTTC-CEEEEEECTTSCEEEEETTTTEEEEECTTCC--EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             EEEECCCCC-CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC--EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEe
Confidence            344454333 4889999999999999999999999986543  2334456678999999999999999888888888887


Q ss_pred             CCCCceeEEee--cCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec-------------CceEEEEecC
Q 003271          627 ENPDYSLRTFT--GHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS-------------GATQMRFQPR  691 (835)
Q Consensus       627 ~t~~~~~~~~~--~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-------------~i~~l~fsp~  691 (835)
                      .........+.  ........+.+.+++. ++++.+.++.|..+|...+........             ....+.+  +
T Consensus        97 ~~~~~~~~~~~~~~~~~~~n~i~~~~~g~-~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~--~  173 (302)
T d2p4oa1          97 VKSDGTVETLLTLPDAIFLNGITPLSDTQ-YLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKR--F  173 (302)
T ss_dssp             ECTTSCEEEEEECTTCSCEEEEEESSSSE-EEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEE--E
T ss_pred             cccccceeeccccCCccccceeEEccCCC-EEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccc--c
Confidence            65443333332  3445688999999975 666777788999999887754432221             1233444  3


Q ss_pred             CCEEEEEE-cCCcEEEEECCCCeEEE--EEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271          692 LGRILAAA-IENYISILDVETQVCRL--KLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       692 ~~~ll~~s-~dg~I~IwDl~t~~~i~--~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                      ++.++++. ..+.|+.+++.......  ...........++|+++|+++++.. ++.|..|+....  ...+......-.
T Consensus       174 ~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~--~~~~~~~~~~~~  251 (302)
T d2p4oa1         174 GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS--TTIIAQAEQGVI  251 (302)
T ss_dssp             TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC--EEEEECGGGTCT
T ss_pred             CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC--EEEEEecCCCCC
Confidence            45555544 56888888876532211  1111233456799999999877776 888888876542  123334444456


Q ss_pred             ceEEEEE---eCCCCEEEEEEcCC
Q 003271          768 KFHSCVF---HPTFPSLLVIGCYE  788 (835)
Q Consensus       768 ~V~sv~f---spdg~~L~sgs~dg  788 (835)
                      ..++|+|   .+|++.|++++..+
T Consensus       252 ~pt~vafg~~~~D~~~Lyvtt~~g  275 (302)
T d2p4oa1         252 GSTAVAFGQTEGDCTAIYVVTNGG  275 (302)
T ss_dssp             TEEEEEECCSTTTTTEEEEEECTT
T ss_pred             CceEEEEcCCCCCCCEEEEECCCC
Confidence            6899999   67888888876653

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=6.8e-08  Score=98.05  Aligned_cols=218  Identities=16%  Similarity=0.159  Sum_probs=146.1

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCC---eEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC-CCeEEEEecCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDK---KAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-DRTVRVWDTEN  628 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg---~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-Dg~I~IWDl~t  628 (835)
                      .+...+.+-+|||||+.||......   .+.+.+...+... .+..+...+.+..|+|+++.++.... ++...++....
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~  114 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDL  114 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEET
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee-EEeeeecccccceecCCCCeeeEeeecCCccceeeccc
Confidence            4456688999999999998775443   4777777766654 44457788899999999998887664 33333333332


Q ss_pred             CCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC--cEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcCC--
Q 003271          629 PDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS--EIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIEN--  702 (835)
Q Consensus       629 ~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg--~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~dg--  702 (835)
                      ...................+++++..++++...++  .|.+.++..+.......  .......|+|++..++..+.++  
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  194 (269)
T d2hqsa1         115 ASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQ  194 (269)
T ss_dssp             TTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSC
T ss_pred             ccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEeecCCc
Confidence            22223444445555666778888887777776666  45556666554333222  2355678999999998887754  


Q ss_pred             -cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--C--CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCC
Q 003271          703 -YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--D--ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPT  777 (835)
Q Consensus       703 -~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--D--g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspd  777 (835)
                       .|.++|...+...  +..+........|+|||+.|+..+  .  ..|+++++..+    ....+......+...+|+|-
T Consensus       195 ~~i~~~~~~~~~~~--~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~----~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         195 QHIAKQDLATGGVQ--VLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR----FKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EEEEEEETTTCCEE--ECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC----CEEECCCSSSEEEEEEECCC
T ss_pred             eeeeEeecccccce--EeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCC----CEEEEeCCCCcEEeEEeCCC
Confidence             4555666655443  333556677889999999988766  2  37889999765    23445556677888899984

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.03  E-value=3.1e-08  Score=103.68  Aligned_cols=236  Identities=10%  Similarity=0.042  Sum_probs=157.6

Q ss_pred             CCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCc
Q 003271          585 ESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSE  664 (835)
Q Consensus       585 ~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~  664 (835)
                      ...+.+..+... ..+..+++.|||+++++...+++|..|+....   ...+......+.+++|.++|+ ++++...++.
T Consensus        16 ~~~~v~~~~p~~-~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~---~~~~~~~~~~~~gla~~~dG~-l~v~~~~~~~   90 (302)
T d2p4oa1          16 APAKIITSFPVN-TFLENLASAPDGTIFVTNHEVGEIVSITPDGN---QQIHATVEGKVSGLAFTSNGD-LVATGWNADS   90 (302)
T ss_dssp             CCEEEEEEECTT-CCEEEEEECTTSCEEEEETTTTEEEEECTTCC---EEEEEECSSEEEEEEECTTSC-EEEEEECTTS
T ss_pred             CcccEEEECCCC-CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCC---EEEEEcCCCCcceEEEcCCCC-eEEEecCCce
Confidence            344555566432 36889999999999999988999988886642   345555667899999999987 6667767778


Q ss_pred             EEEEECCCC--eeeeEee----cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC----------CCCCeEEE
Q 003271          665 IRYWSINNG--SCAGVFK----SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG----------HKNQVHSV  728 (835)
Q Consensus       665 I~iwDl~s~--~~~~~~~----~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~----------h~~~I~sl  728 (835)
                      +..|+....  .......    .....+++.+++..+++.+.++.+..+|...+........          .......+
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi  170 (302)
T d2p4oa1          91 IPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL  170 (302)
T ss_dssp             CEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred             EEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccc
Confidence            887776432  2222221    2266788999987777767788999999987754433221          11234566


Q ss_pred             EEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEE--ec
Q 003271          729 CWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLT--LS  804 (835)
Q Consensus       729 ~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~--l~  804 (835)
                      .++  +.+++.+.  .+.|+.+++...........+ ........++++++|.++++...++.|..|+........  ..
T Consensus       171 ~~~--~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~~~~~~~~~  247 (302)
T d2p4oa1         171 KRF--GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIF-VEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRSTTIIAQAE  247 (302)
T ss_dssp             EEE--TTEEEEEETTTTEEEEEEBCTTSCBCCCEEE-EESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCCEEEEECGG
T ss_pred             ccc--CCceeeecCCCCeEEeccccccccccccccc-cCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCCEEEEEecC
Confidence            665  34444444  889999998765332222222 223446679999999977777778899999876544332  22


Q ss_pred             cCCCCeeEEEE---eCCCCEEEEEECC
Q 003271          805 AHDKLVSSLAA---STVNGMVASASHD  828 (835)
Q Consensus       805 ~h~~~V~~la~---spdg~~LaSgs~D  828 (835)
                      ..-..+++++|   ++|++.|+.++..
T Consensus       248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         248 QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence            34456889999   6688877666544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=2.8e-08  Score=101.73  Aligned_cols=231  Identities=10%  Similarity=-0.027  Sum_probs=152.0

Q ss_pred             CeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeee
Q 003271          599 WITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAG  677 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~  677 (835)
                      .-.+|++.++|+++++.. ..+.|..++............+ ......+++++++. ++++....+.|++++-.+...+.
T Consensus        15 ~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~p~gvav~~~g~-i~v~d~~~~~i~~~~~~~~~~~~   92 (260)
T d1rwia_          15 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNG-LYQPQGLAVDGAGT-VYVTDFNNRVVTLAAGSNNQTVL   92 (260)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCS-CCSCCCEEECTTCC-EEEEETTTEEEEECTTCSCCEEC
T ss_pred             CCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCC-ccCceEEEEcCCCC-EEEeeeeeceeeeeeeccceeee
Confidence            457999999999777654 4567777776654332222222 23467889999875 66676666677776665555444


Q ss_pred             Eee--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCC
Q 003271          678 VFK--SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGS  754 (835)
Q Consensus       678 ~~~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~  754 (835)
                      ...  .....+++.++++.+++-..+..+..++..................+++++++++++++.. ++.|..||.... 
T Consensus        93 ~~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~-  171 (260)
T d1rwia_          93 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESN-  171 (260)
T ss_dssp             CCCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTC-
T ss_pred             eeeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccc-
Confidence            333  3367889999887666555566777777765443322222234567899999999877766 788999987764 


Q ss_pred             CcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec-cCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          755 KGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS-AHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       755 ~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~-~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                        ...............+++.+++..+++....+.|..++.......... ..-.....|+++++|.++++-..+++|+.
T Consensus       172 --~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~  249 (260)
T d1rwia_         172 --NQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVK  249 (260)
T ss_dssp             --CEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEE
T ss_pred             --eeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEE
Confidence              222222234566789999999986666666778888887665544332 33356789999999998888777777775


Q ss_pred             e
Q 003271          834 W  834 (835)
Q Consensus       834 W  834 (835)
                      +
T Consensus       250 i  250 (260)
T d1rwia_         250 L  250 (260)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.02  E-value=4.1e-08  Score=100.48  Aligned_cols=232  Identities=9%  Similarity=-0.036  Sum_probs=149.2

Q ss_pred             EEEEEEeCCCCEEEEEe-CCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          558 VESCHFSPDGKLLATGG-HDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs-~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      -.+++++++|+++++.. ..+.|..++............-......|+++++++++++....+.|++++-.+... +.. 
T Consensus        16 P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~-~~~-   93 (260)
T d1rwia_          16 PSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQT-VLP-   93 (260)
T ss_dssp             EEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSCCE-ECC-
T ss_pred             CCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeecccee-eee-
Confidence            47899999999766654 456777776654433322222223457889999998877776666666665444332 222 


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEe-e--cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVF-K--SGATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~-~--~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      ........++++.++++ ++++-..+..+..++.......... .  .....++++++++.+++...++.|..+|.....
T Consensus        94 ~~~~~~p~~iavd~~g~-i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          94 FDGLNYPEGLAVDTQGA-VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             CCSCCSEEEEEECTTCC-EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCC
T ss_pred             eeeeeecccccccccce-eEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccce
Confidence            22235678999999876 5555556667777777654322211 1  235789999998877776777889999988665


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEe-ecCCCceEEEEEeCCCCEEEEEEcCCeEE
Q 003271          714 CRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHEL-SCTGNKFHSCVFHPTFPSLLVIGCYETLE  791 (835)
Q Consensus       714 ~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l-~~~~~~V~sv~fspdg~~L~sgs~dg~I~  791 (835)
                      ..............|+++++|+++++.. .+.|..++.....    ...+ ...-.....+++++++..+++-..++.|+
T Consensus       173 ~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~----~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~  248 (260)
T d1rwia_         173 QVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTT----STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVV  248 (260)
T ss_dssp             EEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSC----CEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEE
T ss_pred             eeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCe----EEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEE
Confidence            4443334556678999999999888777 7788888765431    1122 22235678999999987555545556777


Q ss_pred             EEEcC
Q 003271          792 LWNMT  796 (835)
Q Consensus       792 IwDl~  796 (835)
                      .++..
T Consensus       249 ~i~~~  253 (260)
T d1rwia_         249 KLTSL  253 (260)
T ss_dssp             EECCC
T ss_pred             EEeCC
Confidence            66543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.02  E-value=1.3e-07  Score=99.65  Aligned_cols=238  Identities=10%  Similarity=0.084  Sum_probs=154.8

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeC-------CCeEEEEEcCCCeEEEEeccC----CCCeEEEEECCCCCEEEEEECCCeEE
Q 003271          554 STSKVESCHFSPDGKLLATGGH-------DKKAVLWCTESFTVKSTLEEH----TQWITDVRFSPSLSRLATSSADRTVR  622 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~-------Dg~I~VWd~~t~~~i~~l~~h----~~~V~sv~fspdg~~Latgs~Dg~I~  622 (835)
                      .-.....++|.++|+++++...       ++.|..||.+++.........    ...-..++|.+++..|+++...+.|.
T Consensus        16 ~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~   95 (314)
T d1pjxa_          16 DIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLL   95 (314)
T ss_dssp             CCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEE
T ss_pred             CCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEE
Confidence            3334678899999998776432       467999999887665443221    12356799999999888888878888


Q ss_pred             EEecCCCCceeEEeecCC---CCeEEEEEcCCCCcEEEEEeC---------------CCcEEEEECCCCeeeeEee--cC
Q 003271          623 VWDTENPDYSLRTFTGHS---TTVMSLDFHPSKEDLLCSCDN---------------NSEIRYWSINNGSCAGVFK--SG  682 (835)
Q Consensus       623 IWDl~t~~~~~~~~~~h~---~~V~sl~fsp~g~~ll~sgs~---------------Dg~I~iwDl~s~~~~~~~~--~~  682 (835)
                      +++.+.....+.......   .....+++.++|. +.++-..               +|.|+.++.. ++......  ..
T Consensus        96 ~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~-lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~~  173 (314)
T d1pjxa_          96 VVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN-LWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQF  173 (314)
T ss_dssp             EEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC-EEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEESS
T ss_pred             EEeCCCcEEEEEeccccccccCCCcEEEECCCCC-EEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcce
Confidence            888875432111111111   1357899999986 4444321               2345555543 33332222  22


Q ss_pred             ceEEEEecCCC----EEEEEE-cCCcEEEEECCCCeEE------EEEcC-CCCCeEEEEEcCCCCEEEEEe-CCeEEEEE
Q 003271          683 ATQMRFQPRLG----RILAAA-IENYISILDVETQVCR------LKLQG-HKNQVHSVCWNTSGEYLASVS-DELVRVWS  749 (835)
Q Consensus       683 i~~l~fsp~~~----~ll~~s-~dg~I~IwDl~t~~~i------~~l~~-h~~~I~sl~fspdg~~Lasgs-Dg~I~IwD  749 (835)
                      ...++|+++++    .|+++. ..+.|+.||+.....+      ..+.+ +......+++..+|+++++.. .+.|.+||
T Consensus       174 pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~d  253 (314)
T d1pjxa_         174 PNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFG  253 (314)
T ss_dssp             EEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEEC
T ss_pred             eeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEe
Confidence            45788988765    455554 5688999987643221      12222 223466899999999887776 88999999


Q ss_pred             cCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcC
Q 003271          750 IGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT  796 (835)
Q Consensus       750 l~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~  796 (835)
                      ...+   ..+..+......+.+|+|.|+++.|+++. .++.|+.+++.
T Consensus       254 p~~g---~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         254 PDGG---QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTCB---SCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCC---EEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8766   44455555667889999999998776665 45788888864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.01  E-value=6.6e-07  Score=94.28  Aligned_cols=228  Identities=11%  Similarity=0.087  Sum_probs=152.0

Q ss_pred             CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC----CeEEEEecCC
Q 003271          553 ASTSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD----RTVRVWDTEN  628 (835)
Q Consensus       553 gH~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D----g~I~IWDl~t  628 (835)
                      .....+..++|+++|+++++-...+.|+.|+.++.+....+.........++|+++|+++++...+    +.|...+...
T Consensus        37 ~~~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          37 KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS
T ss_pred             cCCcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC
Confidence            444557899999999988887788999999998877766665666778999999999887776432    2344444444


Q ss_pred             CCceeEEeecC---CCCeEEEEEcCCCCcEEEEEeC------CCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEE
Q 003271          629 PDYSLRTFTGH---STTVMSLDFHPSKEDLLCSCDN------NSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILA  697 (835)
Q Consensus       629 ~~~~~~~~~~h---~~~V~sl~fsp~g~~ll~sgs~------Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~  697 (835)
                      ..  +.....+   ...+..+.+.++|. ++++...      .+.+..++...........  .....++|+++++.|++
T Consensus       117 ~~--~~~~~~~~~~~~~~nd~~~d~~G~-l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyv  193 (319)
T d2dg1a1         117 DN--LQDIIEDLSTAYCIDDMVFDSKGG-FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWV  193 (319)
T ss_dssp             CS--CEEEECSSSSCCCEEEEEECTTSC-EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEE
T ss_pred             ce--eeeeccCCCcccCCcceeEEeccc-eeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEE
Confidence            33  2222222   23477899999986 5544322      2346666665443322222  23567999999998776


Q ss_pred             EEc-CCcEEEEECCCC----eEE----EEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeec---
Q 003271          698 AAI-ENYISILDVETQ----VCR----LKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSC---  764 (835)
Q Consensus       698 ~s~-dg~I~IwDl~t~----~~i----~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~---  764 (835)
                      +.. .+.|+.||+...    ...    ............++++.+|++.++.. .+.|.+||- .+   +.+.++..   
T Consensus       194 ad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G---~~l~~i~~P~~  269 (319)
T d2dg1a1         194 TETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RG---YPIGQILIPGR  269 (319)
T ss_dssp             EEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TS---CEEEEEECTTG
T ss_pred             ecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CC---cEEEEEeCCCc
Confidence            654 689999998632    111    11111223466899999999887777 889999995 45   45555543   


Q ss_pred             ---CCCceEEEEEeCCCCEEEEEEcC
Q 003271          765 ---TGNKFHSCVFHPTFPSLLVIGCY  787 (835)
Q Consensus       765 ---~~~~V~sv~fspdg~~L~sgs~d  787 (835)
                         +...+++++|.++...+++.+.+
T Consensus       270 ~~~~~~~~~~~~~~~~~~~~~~t~~~  295 (319)
T d2dg1a1         270 DEGHMLRSTHPQFIPGTNQLIICSND  295 (319)
T ss_dssp             GGTCSCBCCEEEECTTSCEEEEEEEC
T ss_pred             CCCcCceeeeEEEeCCCCEEEEEcCC
Confidence               23457899999988877777654

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.94  E-value=1.1e-06  Score=90.48  Aligned_cols=231  Identities=10%  Similarity=0.146  Sum_probs=157.5

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEecc------CCCCeEEEEECCCC-CEEEEE-ECCCeEEEEecCC
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEE------HTQWITDVRFSPSL-SRLATS-SADRTVRVWDTEN  628 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~------h~~~V~sv~fspdg-~~Latg-s~Dg~I~IWDl~t  628 (835)
                      .-..|+++++|+++++-...+.|++||.+ ++.+..+..      ....-..+++..+. .++++. +.++.|.+++.. 
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc-
Confidence            36789999999988887778899999965 677766632      11234556666553 344433 234567777654 


Q ss_pred             CCceeEEe-ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----cCceEEEEecCCCEEEEEEcCC
Q 003271          629 PDYSLRTF-TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----SGATQMRFQPRLGRILAAAIEN  702 (835)
Q Consensus       629 ~~~~~~~~-~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~dg  702 (835)
                      +.. ...+ .........+++.+++. ++++....+.+.+++.. ++.+..+.     .....+++.++++.+++....+
T Consensus       102 g~~-~~~~~~~~~~~p~~~avd~~G~-i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~  178 (279)
T d1q7fa_         102 GQF-VRKFGATILQHPRGVTVDNKGR-IIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAH  178 (279)
T ss_dssp             SCE-EEEECTTTCSCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGT
T ss_pred             ccc-eeecCCCcccccceeccccCCc-EEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecccc
Confidence            332 3333 33445678899998876 55565667788888865 45555543     2356788888877666666678


Q ss_pred             cEEEEECCCCeEEEEEc--CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeec--CCCceEEEEEeC
Q 003271          703 YISILDVETQVCRLKLQ--GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSC--TGNKFHSCVFHP  776 (835)
Q Consensus       703 ~I~IwDl~t~~~i~~l~--~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~--~~~~V~sv~fsp  776 (835)
                      .|++||.. ++.+..+.  +.......|+++++|+++++-.  ++.|.+|+. ++   +.+..+..  .......+++.+
T Consensus       179 ~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G---~~~~~~~~~~~~~~p~~vav~~  253 (279)
T d1q7fa_         179 CVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DG---QLISALESKVKHAQCFDVALMD  253 (279)
T ss_dssp             EEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TS---CEEEEEEESSCCSCEEEEEEET
T ss_pred             ceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CC---CEEEEEeCCCCCCCEeEEEEeC
Confidence            99999975 45565653  3455688999999999887765  447999984 33   45545433  234688999999


Q ss_pred             CCCEEEEEEcCCeEEEEEcCCC
Q 003271          777 TFPSLLVIGCYETLELWNMTEN  798 (835)
Q Consensus       777 dg~~L~sgs~dg~I~IwDl~~~  798 (835)
                      +|. |++++.++.|++|.....
T Consensus       254 dG~-l~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         254 DGS-VVLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             TTE-EEEEETTTEEEEEECSCC
T ss_pred             CCc-EEEEeCCCeEEEEEeeee
Confidence            996 666778889999987654

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.86  E-value=2.2e-06  Score=90.13  Aligned_cols=227  Identities=9%  Similarity=0.043  Sum_probs=146.7

Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC----CCcEEEEECCC
Q 003271          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN----NSEIRYWSINN  672 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~----Dg~I~iwDl~s  672 (835)
                      ...+..++|.++|+++++-...+.|+.|+..+... ...+.........++|+++|. ++++...    .+.|...+...
T Consensus        39 ~~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~-~~~~~~~~~~p~gla~~~dG~-l~va~~~~~~~~~~i~~~~~~~  116 (319)
T d2dg1a1          39 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEI-KRPFVSHKANPAAIKIHKDGR-LFVCYLGDFKSTGGIFAATENG  116 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCE-EEEEECSSSSEEEEEECTTSC-EEEEECTTSSSCCEEEEECTTS
T ss_pred             CcCcEeCEECCCCCEEEEECCCCEEEEEECCCCeE-EEEEeCCCCCeeEEEECCCCC-EEEEecCCCccceeEEEEcCCC
Confidence            34557899999999777777889999998876553 444555566789999999986 4444322    33455666665


Q ss_pred             CeeeeEee-----cCceEEEEecCCCEEEEEEc------CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271          673 GSCAGVFK-----SGATQMRFQPRLGRILAAAI------ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       673 ~~~~~~~~-----~~i~~l~fsp~~~~ll~~s~------dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      ........     .....+++.++|..+++...      .+.+..++........... .-.....++|+++++.|+.+.
T Consensus       117 ~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~-~~~~pnGia~s~dg~~lyvad  195 (319)
T d2dg1a1         117 DNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-NISVANGIALSTDEKVLWVTE  195 (319)
T ss_dssp             CSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-EESSEEEEEECTTSSEEEEEE
T ss_pred             ceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEee-ccceeeeeeeccccceEEEec
Confidence            55443332     12567889999875554322      1336666655433322222 233467899999998776665


Q ss_pred             --CCeEEEEEcCCCCCcc-eE----EEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eec------cCC
Q 003271          742 --DELVRVWSIGSGSKGE-CI----HELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS------AHD  807 (835)
Q Consensus       742 --Dg~I~IwDl~t~~~~~-~i----~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~------~h~  807 (835)
                        .+.|+.||+....... ..    ............+++..+|+..++....+.|.+||- +++.+ .+.      .+.
T Consensus       196 ~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~~~~~  274 (319)
T d2dg1a1         196 TTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHM  274 (319)
T ss_dssp             GGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCS
T ss_pred             ccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcCCCcC
Confidence              7899999987542211 11    111122234678999999997777778899999996 56655 322      334


Q ss_pred             CCeeEEEEeCCCCEEEEEEC
Q 003271          808 KLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       808 ~~V~~la~spdg~~LaSgs~  827 (835)
                      ..+++++|.+++..+++...
T Consensus       275 ~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         275 LRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             CBCCEEEECTTSCEEEEEEE
T ss_pred             ceeeeEEEeCCCCEEEEEcC
Confidence            46889999988776665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.86  E-value=1.2e-06  Score=90.07  Aligned_cols=227  Identities=13%  Similarity=0.140  Sum_probs=154.4

Q ss_pred             CeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec------CCCCeEEEEEcCCCCcEEEE-EeCCCcEEEEECC
Q 003271          599 WITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG------HSTTVMSLDFHPSKEDLLCS-CDNNSEIRYWSIN  671 (835)
Q Consensus       599 ~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~------h~~~V~sl~fsp~g~~ll~s-gs~Dg~I~iwDl~  671 (835)
                      ....|+++++++++++-...+.|++||.+ +.. +..+..      .......+++.++...++++ .+.++.|.+++..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRF-KFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCE-EEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCE-EEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence            46789999999988777778899999976 332 333321      11234556666654444444 4455678778764


Q ss_pred             CCeeeeEeec----CceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEE--cCCCCCeEEEEEcCCCCEEEEEe-CCe
Q 003271          672 NGSCAGVFKS----GATQMRFQPRLGRILAAAIENYISILDVETQVCRLKL--QGHKNQVHSVCWNTSGEYLASVS-DEL  744 (835)
Q Consensus       672 s~~~~~~~~~----~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l--~~h~~~I~sl~fspdg~~Lasgs-Dg~  744 (835)
                       ++....+..    ....+++.+++..+++....+.+.+++.. ++.+..+  ..+......+++.+++.++++.. .+.
T Consensus       102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~  179 (279)
T d1q7fa_         102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHC  179 (279)
T ss_dssp             -SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTE
T ss_pred             -ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccc
Confidence             555555532    25678889888877776666778888865 4455554  34566788999999998887777 789


Q ss_pred             EEEEEcCCCCCcceEEEee--cCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcEE-Ee--ccCCCCeeEEEEeCC
Q 003271          745 VRVWSIGSGSKGECIHELS--CTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTL-TL--SAHDKLVSSLAASTV  818 (835)
Q Consensus       745 I~IwDl~t~~~~~~i~~l~--~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~~-~l--~~h~~~V~~la~spd  818 (835)
                      |++||...    ..+.++.  +.......+++.++|+.+++-.. +..|.+|+. +++.+ .+  .........|++.++
T Consensus       180 V~~~d~~G----~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~d  254 (279)
T d1q7fa_         180 VKVFNYEG----QYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDD  254 (279)
T ss_dssp             EEEEETTC----CEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETT
T ss_pred             eeeeecCC----ceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCC
Confidence            99999754    3454543  23456789999999985555433 347999985 46654 32  233346889999999


Q ss_pred             CCEEEEEECCCcEEEeC
Q 003271          819 NGMVASASHDKCVKIWK  835 (835)
Q Consensus       819 g~~LaSgs~DG~V~IWd  835 (835)
                      |.+++ ++.+.+|++|+
T Consensus       255 G~l~V-~~~n~~v~~fr  270 (279)
T d1q7fa_         255 GSVVL-ASKDYRLYIYR  270 (279)
T ss_dssp             TEEEE-EETTTEEEEEE
T ss_pred             CcEEE-EeCCCeEEEEE
Confidence            97555 56789999985

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=6.4e-07  Score=99.66  Aligned_cols=270  Identities=11%  Similarity=0.042  Sum_probs=160.5

Q ss_pred             CEEEEEEeCCCCEEEEEe---------CCCeEEEEEcCCCeEEEEe--ccCCCCeEEEEECCCCCEEEEEECCCeEEEEe
Q 003271          557 KVESCHFSPDGKLLATGG---------HDKKAVLWCTESFTVKSTL--EEHTQWITDVRFSPSLSRLATSSADRTVRVWD  625 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs---------~Dg~I~VWd~~t~~~i~~l--~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD  625 (835)
                      .+....||||+++|+...         ..+.+.|||+.++......  ......+....|+|||+.||... ++.|.+.+
T Consensus        62 ~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~  140 (465)
T d1xfda1          62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCA  140 (465)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEES
T ss_pred             ccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEe
Confidence            567788999999988764         3567899999987754332  22344566789999999998875 56788888


Q ss_pred             cCCCCceeEEeecCCCCe-----------------EEEEEcCCCCcEEEEEeCCCcE-----------------------
Q 003271          626 TENPDYSLRTFTGHSTTV-----------------MSLDFHPSKEDLLCSCDNNSEI-----------------------  665 (835)
Q Consensus       626 l~t~~~~~~~~~~h~~~V-----------------~sl~fsp~g~~ll~sgs~Dg~I-----------------------  665 (835)
                      ..++.....+..+....|                 ..+-|+|||+.|++.--++..|                       
T Consensus       141 ~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~  220 (465)
T d1xfda1         141 HVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPK  220 (465)
T ss_dssp             SSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCB
T ss_pred             cCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeeccc
Confidence            876554222222222222                 4677999999887765444433                       


Q ss_pred             ----------EEEECCCCeeeeEee------c---CceEEEEecCCCEEEEEEc-C---CcEEEEECCCCeEEEEEcCC-
Q 003271          666 ----------RYWSINNGSCAGVFK------S---GATQMRFQPRLGRILAAAI-E---NYISILDVETQVCRLKLQGH-  721 (835)
Q Consensus       666 ----------~iwDl~s~~~~~~~~------~---~i~~l~fsp~~~~ll~~s~-d---g~I~IwDl~t~~~i~~l~~h-  721 (835)
                                .++|+.++.......      .   -+..+.|.+++..++.... +   ..|.++|..++++...+..+ 
T Consensus       221 ~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~  300 (465)
T d1xfda1         221 AGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES  300 (465)
T ss_dssp             TTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC
T ss_pred             cCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC
Confidence                      344443332211110      0   0456778888765544433 1   25888999998776655432 


Q ss_pred             CCCe----EEEEEcCCCCEEEE--Ee--CC--eEEEEEcCCC---CCcceEEEeecCCCceEEE-EEeCCCCEEEEEEcC
Q 003271          722 KNQV----HSVCWNTSGEYLAS--VS--DE--LVRVWSIGSG---SKGECIHELSCTGNKFHSC-VFHPTFPSLLVIGCY  787 (835)
Q Consensus       722 ~~~I----~sl~fspdg~~Las--gs--Dg--~I~IwDl~t~---~~~~~i~~l~~~~~~V~sv-~fspdg~~L~sgs~d  787 (835)
                      ...|    ....|+++|..++.  .+  +|  .++.+++...   .....+..+....-.|..+ .|+.+++.|+..+..
T Consensus       301 ~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vyF~a~~  380 (465)
T d1xfda1         301 EAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIYFLSTE  380 (465)
T ss_dssp             SSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEEEEESS
T ss_pred             CceEeccCCceeEccCCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEEEEEeC
Confidence            2222    34578999974332  22  33  4444443211   1112333444445556665 688888887765543


Q ss_pred             C-----eEEEEEcCCCcEE---E-eccCCCCeeEEEEeCCCCEEEEEEC
Q 003271          788 E-----TLELWNMTENKTL---T-LSAHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       788 g-----~I~IwDl~~~~~~---~-l~~h~~~V~~la~spdg~~LaSgs~  827 (835)
                      .     .|+-.++..+...   + ..........+.|||++++++..+.
T Consensus       381 ~~p~~~hly~v~l~g~~~~~~lt~~~~~~~~~~~~~~S~~~~y~v~~~s  429 (465)
T d1xfda1         381 DLPRRRQLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDFFLLKCE  429 (465)
T ss_dssp             SCTTCCEEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSEEEEECC
T ss_pred             CCCCceEEEEEECCCCCcceeeccccCCCCCEEEEEECCCCCEEEEEee
Confidence            2     3555555544322   1 1234456779999999998875543

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.80  E-value=1.4e-06  Score=91.68  Aligned_cols=234  Identities=9%  Similarity=-0.018  Sum_probs=147.8

Q ss_pred             CCeEEEEECCCCCEEEEEEC-------CCeEEEEecCCCCceeEEee---cCCCCeEEEEEcCCCCcEEEEEeCCCcEEE
Q 003271          598 QWITDVRFSPSLSRLATSSA-------DRTVRVWDTENPDYSLRTFT---GHSTTVMSLDFHPSKEDLLCSCDNNSEIRY  667 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~-------Dg~I~IWDl~t~~~~~~~~~---~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~i  667 (835)
                      .....++|.++|+++++...       ++.|..||..++........   ........+.|.++++.++ +++....|..
T Consensus        18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~-vad~~~~i~~   96 (314)
T d1pjxa_          18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLF-VADMRLGLLV   96 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEE-EEETTTEEEE
T ss_pred             CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEE-EEECCCeEEE
Confidence            34567899999998776433       46788888887653221111   1123357899999987555 4555667888


Q ss_pred             EECCCCeeeeEee-------cCceEEEEecCCCEEEEEEc---------------CCcEEEEECCCCeEEEEEcCCCCCe
Q 003271          668 WSINNGSCAGVFK-------SGATQMRFQPRLGRILAAAI---------------ENYISILDVETQVCRLKLQGHKNQV  725 (835)
Q Consensus       668 wDl~s~~~~~~~~-------~~i~~l~fsp~~~~ll~~s~---------------dg~I~IwDl~t~~~i~~l~~h~~~I  725 (835)
                      +|...........       .....+++.++|..+++-..               .|.|+.++.. ++...... .-...
T Consensus        97 ~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~-~~~~p  174 (314)
T d1pjxa_          97 VQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AFQFP  174 (314)
T ss_dssp             EETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EESSE
T ss_pred             EeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeC-Cccee
Confidence            8987654332111       12467899999877665322               2345555543 23222222 23345


Q ss_pred             EEEEEcCCCC----EEEEEe--CCeEEEEEcCCCCCcc---eEEEeec-CCCceEEEEEeCCCCEEEEEEcCCeEEEEEc
Q 003271          726 HSVCWNTSGE----YLASVS--DELVRVWSIGSGSKGE---CIHELSC-TGNKFHSCVFHPTFPSLLVIGCYETLELWNM  795 (835)
Q Consensus       726 ~sl~fspdg~----~Lasgs--Dg~I~IwDl~t~~~~~---~i~~l~~-~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl  795 (835)
                      ..++|++++.    +|+.+.  .+.|..||+.......   ....+.. .......+++..+|+..++....+.|.+||.
T Consensus       175 NGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp  254 (314)
T d1pjxa_         175 NGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGP  254 (314)
T ss_dssp             EEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECT
T ss_pred             eeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeC
Confidence            6889988765    455544  7899999886542111   1112222 1234568999999997777777889999998


Q ss_pred             CCCcEE-EeccCCCCeeEEEEeCCCC-EEEEEECCCcEEEe
Q 003271          796 TENKTL-TLSAHDKLVSSLAASTVNG-MVASASHDKCVKIW  834 (835)
Q Consensus       796 ~~~~~~-~l~~h~~~V~~la~spdg~-~LaSgs~DG~V~IW  834 (835)
                      +.+..+ .+......+++++|.++++ ++++.+.+|.|...
T Consensus       255 ~~g~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~  295 (314)
T d1pjxa_         255 DGGQPKMRIRCPFEKPSNLHFKPQTKTIFVTEHENNAVWKF  295 (314)
T ss_dssp             TCBSCSEEEECSSSCEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             CCCEEEEEEECCCCCEEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            887754 4455557789999999987 55666677877654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=3.6e-07  Score=101.77  Aligned_cols=257  Identities=14%  Similarity=0.139  Sum_probs=155.5

Q ss_pred             EEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccC---CCCeEEEEECCCCCEEEEEE---------CCCeEEEEecCCC
Q 003271          562 HFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEH---TQWITDVRFSPSLSRLATSS---------ADRTVRVWDTENP  629 (835)
Q Consensus       562 ~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h---~~~V~sv~fspdg~~Latgs---------~Dg~I~IWDl~t~  629 (835)
                      .|.+++.++.. ..+|.|.+||+.+++....+..+   ...+....|+||+++|+...         ..+.+.|||+.++
T Consensus        23 ~W~~~~~~~~~-~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~  101 (465)
T d1xfda1          23 KWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHG  101 (465)
T ss_dssp             CBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSC
T ss_pred             EEeCCCcEEEE-eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCC
Confidence            57788876654 45789999999887765444332   23677889999999988764         3578999999987


Q ss_pred             Cce-eEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecC---------------------ceEEE
Q 003271          630 DYS-LRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSG---------------------ATQMR  687 (835)
Q Consensus       630 ~~~-~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~---------------------i~~l~  687 (835)
                      ... +.........+....|+|+|+.++++.  ++.|++.+...+..+.....+                     ...+.
T Consensus       102 ~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~--~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~  179 (465)
T d1xfda1         102 DPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF--ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHW  179 (465)
T ss_dssp             CCEECCCTTCCSCCCSBCCBCSSTTCEEEEE--TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEE
T ss_pred             ceeeccCccCCccccceeeeccCCceEEEEe--cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceEE
Confidence            641 111122334566788999999887665  678999988776655433211                     24577


Q ss_pred             EecCCCEEEEEEcC-Cc---------------------------------EEEEECCCCeEEEEEc------CCCCCeEE
Q 003271          688 FQPRLGRILAAAIE-NY---------------------------------ISILDVETQVCRLKLQ------GHKNQVHS  727 (835)
Q Consensus       688 fsp~~~~ll~~s~d-g~---------------------------------I~IwDl~t~~~i~~l~------~h~~~I~s  727 (835)
                      |+|+|++|+....| ..                                 +.++|+.++.......      .....+..
T Consensus       180 WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~  259 (465)
T d1xfda1         180 WSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITM  259 (465)
T ss_dssp             ECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEE
T ss_pred             ECCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeee
Confidence            99999999987643 22                                 3444444332211111      11223677


Q ss_pred             EEEcCCCCEEEEEeC--C---eEEEEEcCCCCCcceEEEeecCCCc----eEEEEEeCCCCEEEEE--E-cCC--eEEEE
Q 003271          728 VCWNTSGEYLASVSD--E---LVRVWSIGSGSKGECIHELSCTGNK----FHSCVFHPTFPSLLVI--G-CYE--TLELW  793 (835)
Q Consensus       728 l~fspdg~~LasgsD--g---~I~IwDl~t~~~~~~i~~l~~~~~~----V~sv~fspdg~~L~sg--s-~dg--~I~Iw  793 (835)
                      +.|++++++++...+  .   .|.++|..++.... +..- .....    -....|+++|..++..  + .+|  .++.+
T Consensus       260 ~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~-~~~e-~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~ly~~  337 (465)
T d1xfda1         260 VKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTK-KHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKFYHI  337 (465)
T ss_dssp             EEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEE-EEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCEEEE
T ss_pred             eEEcCCCeEEEEEEccccccceEEEEcCCCCcEEE-EEEE-cCCceEeccCCceeEccCCCeeEEEEeeeecccCceEEE
Confidence            899999987776552  2   68889998874322 2211 11222    2345789999854432  2 233  45544


Q ss_pred             EcC-------CCcEEEeccCCCCeeEE-EEeCCCCEEE
Q 003271          794 NMT-------ENKTLTLSAHDKLVSSL-AASTVNGMVA  823 (835)
Q Consensus       794 Dl~-------~~~~~~l~~h~~~V~~l-a~spdg~~La  823 (835)
                      ++.       ......+....-.|..+ +|+.+++.|+
T Consensus       338 ~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d~~~~~vy  375 (465)
T d1xfda1         338 TVSSSQPNSSNDNIQSITSGDWDVTKILAYDEKGNKIY  375 (465)
T ss_dssp             EEECSSCCSSSCCCCBSCCSSSCEEEEEEEETTTTEEE
T ss_pred             EeccccccCCCceeEEeccCCceEEEEEEEcCCCCEEE
Confidence            432       12222333444556665 5777776554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.71  E-value=7.7e-07  Score=90.11  Aligned_cols=231  Identities=11%  Similarity=0.067  Sum_probs=134.6

Q ss_pred             EEeCC--CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEEC-C-----CeEEEEecCCCCcee
Q 003271          562 HFSPD--GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSA-D-----RTVRVWDTENPDYSL  633 (835)
Q Consensus       562 ~fSpd--g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~-D-----g~I~IWDl~t~~~~~  633 (835)
                      .++||  |+.||..+ ++.|.+.|+.+++.. .+..+.+.+...+|+|||+.||.... +     ..|.+++..++..  
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~-~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~--   80 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTR-KIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEI--   80 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEE-EEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEE--
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEE-EEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCce--
Confidence            46788  99888765 567999999988765 55567778899999999999886643 2     2366777766542  


Q ss_pred             EEeec-------CCCCeEEEEEcCCCCcEEEEEeCC-----CcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc-
Q 003271          634 RTFTG-------HSTTVMSLDFHPSKEDLLCSCDNN-----SEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI-  700 (835)
Q Consensus       634 ~~~~~-------h~~~V~sl~fsp~g~~ll~sgs~D-----g~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~-  700 (835)
                      ..+..       .......+.|+|+++.++++...+     ..+...+...+............ .+.+++..++.... 
T Consensus        81 ~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  159 (281)
T d1k32a2          81 KRITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLNLGPATH-ILFADGRRVIGRNTF  159 (281)
T ss_dssp             EECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECCSCSCSE-EEEETTEEEEEESCS
T ss_pred             EEeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEecCCccce-eeecCCCeEEEeecc
Confidence            33322       223456788999998776654322     23556666655544333333333 33444444433322 


Q ss_pred             CC-----------cEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeC--CeEEEEEcCCCCCcceEEEeecCCC
Q 003271          701 EN-----------YISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSD--ELVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       701 dg-----------~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsD--g~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                      +.           ...++........... .+........++++..+.....+  ..|.++|+.+...    ..+... .
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~----~~lt~~-~  233 (281)
T d1k32a2         160 ELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVIVGHRIYFITDIDGFGQIYSTDLDGKDL----RKHTSF-T  233 (281)
T ss_dssp             CCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEEETTEEEEEECTTSSCEEEEEETTSCSC----EECCCC-C
T ss_pred             ccceeeeeccCCcceeeeeccccceeecc-CCccccceeeeeccccceecccccccceEEEeCCCCce----EEeecC-C
Confidence            11           1222222222222222 23344555566655322222223  3788888877632    222222 2


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEec
Q 003271          768 KFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLS  804 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~  804 (835)
                      ......|+|+|+.|+.. .++.|+++|+.+++...+.
T Consensus       234 ~~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i~  269 (281)
T d1k32a2         234 DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKIE  269 (281)
T ss_dssp             SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEECC
T ss_pred             CcccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEec
Confidence            22334689999988764 4678999999999877553

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.65  E-value=3.2e-05  Score=80.01  Aligned_cols=220  Identities=15%  Similarity=0.117  Sum_probs=149.1

Q ss_pred             EEEEEeCC-CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271          559 ESCHFSPD-GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       559 ~sl~fSpd-g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      .+..|++. +.++.+--..+.|..||.++++... + .....+.++++.+++.++++ +.+ .|.++|..+++.......
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~-~-~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~~~~l~~~   96 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-H-ALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGVLTLHAEL   96 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-E-ECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCCEEEEECS
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE-E-ECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccceeeEEeee
Confidence            56678874 4455554467899999999886542 2 23457889999988876665 455 488999998764222111


Q ss_pred             cC---CCCeEEEEEcCCCCcEEEEEeC---CCcEEEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEc-CCcEEEEE
Q 003271          638 GH---STTVMSLDFHPSKEDLLCSCDN---NSEIRYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAI-ENYISILD  708 (835)
Q Consensus       638 ~h---~~~V~sl~fsp~g~~ll~sgs~---Dg~I~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~-dg~I~IwD  708 (835)
                      ..   ...+..+.+.|+|...+.+...   .+.-.+|.+..++......  .....++|+++++.++++.. .+.|+.|+
T Consensus        97 ~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~  176 (295)
T d2ghsa1          97 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVP  176 (295)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEE
T ss_pred             ecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEee
Confidence            11   2357889999998744433321   2345667666676554443  23567899999998777665 57899888


Q ss_pred             CCC------C--eEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEe-CCC
Q 003271          709 VET------Q--VCRLKLQGHKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFH-PTF  778 (835)
Q Consensus       709 l~t------~--~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fs-pdg  778 (835)
                      +..      +  .....+.+.......++++.+|++.++.. .+.|.+||- .+   +.+..+......+++|+|- ++.
T Consensus       177 ~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G---~~~~~i~lP~~~~T~~~FGG~d~  252 (295)
T d2ghsa1         177 LDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DG---NHIARYEVPGKQTTCPAFIGPDA  252 (295)
T ss_dssp             BCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TC---CEEEEEECSCSBEEEEEEESTTS
T ss_pred             ecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CC---cEeeEecCCCCceEEEEEeCCCC
Confidence            742      1  12223334456688999999999888776 778999995 44   5677777666789999996 677


Q ss_pred             CEEEEEEc
Q 003271          779 PSLLVIGC  786 (835)
Q Consensus       779 ~~L~sgs~  786 (835)
                      +.|++.+.
T Consensus       253 ~~LyvTta  260 (295)
T d2ghsa1         253 SRLLVTSA  260 (295)
T ss_dssp             CEEEEEEB
T ss_pred             CEEEEEEC
Confidence            77777654

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.46  E-value=0.00011  Score=75.94  Aligned_cols=217  Identities=9%  Similarity=0.026  Sum_probs=141.9

Q ss_pred             EEEECCC-CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee
Q 003271          602 DVRFSPS-LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK  680 (835)
Q Consensus       602 sv~fspd-g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~  680 (835)
                      +..|++. +.++++=-..+.|..||..++..  ..+ .....+.++++.+++. +++++ . ..|.++|..+++......
T Consensus        22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~--~~~-~~~~~~~~i~~~~dg~-l~va~-~-~gl~~~d~~tg~~~~l~~   95 (295)
T d2ghsa1          22 GPTFDPASGTAWWFNILERELHELHLASGRK--TVH-ALPFMGSALAKISDSK-QLIAS-D-DGLFLRDTATGVLTLHAE   95 (295)
T ss_dssp             EEEEETTTTEEEEEEGGGTEEEEEETTTTEE--EEE-ECSSCEEEEEEEETTE-EEEEE-T-TEEEEEETTTCCEEEEEC
T ss_pred             CCeEECCCCEEEEEECCCCEEEEEECCCCeE--EEE-ECCCCcEEEEEecCCC-EEEEE-e-CccEEeecccceeeEEee
Confidence            4567764 44444434567899999887653  222 2345788999988865 55443 3 469999999887654432


Q ss_pred             -------cCceEEEEecCCCEEEEEEcC----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEE
Q 003271          681 -------SGATQMRFQPRLGRILAAAIE----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRV  747 (835)
Q Consensus       681 -------~~i~~l~fsp~~~~ll~~s~d----g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~I  747 (835)
                             .....+.+.++|...++...+    +.-.+|.+..++....+.. -.....++|+++++.++...  .+.|+.
T Consensus        96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~~~s~d~~~l~~~dt~~~~I~~  174 (295)
T d2ghsa1          96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMR  174 (295)
T ss_dssp             SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec-cCCcceeeecCCCceEEEeecccceeeE
Confidence                   126678899998866655432    3456676666665544432 33567899999998776665  779999


Q ss_pred             EEcCCCCC-----cceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccCCCCeeEEEEe-CCCC
Q 003271          748 WSIGSGSK-----GECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAHDKLVSSLAAS-TVNG  820 (835)
Q Consensus       748 wDl~t~~~-----~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h~~~V~~la~s-pdg~  820 (835)
                      |++.....     ................+++..+|.+.++.-..+.|..||. +++.+ .+.-....+++++|- +|.+
T Consensus       175 ~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~  253 (295)
T d2ghsa1         175 VPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDAS  253 (295)
T ss_dssp             EEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSC
T ss_pred             eeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCC
Confidence            98754211     1222333444566888999999986666667789999996 45555 444334579999997 5655


Q ss_pred             -EEEEEE
Q 003271          821 -MVASAS  826 (835)
Q Consensus       821 -~LaSgs  826 (835)
                       +++|..
T Consensus       254 ~LyvTta  260 (295)
T d2ghsa1         254 RLLVTSA  260 (295)
T ss_dssp             EEEEEEB
T ss_pred             EEEEEEC
Confidence             444443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.34  E-value=2.6e-05  Score=78.39  Aligned_cols=218  Identities=9%  Similarity=0.064  Sum_probs=129.3

Q ss_pred             EECCC--CCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeee
Q 003271          604 RFSPS--LSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCA  676 (835)
Q Consensus       604 ~fspd--g~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~~~~  676 (835)
                      ..+||  |+.++..+ ++.|.++|+.+++  .+.+..+...+...+|+|||+.++++...++     .|.+++...++..
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~--~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~   81 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGS--TRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIK   81 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCC--EEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCC--EEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceE
Confidence            35688  88888765 4568888998766  4566777788899999999998887765443     4888888888765


Q ss_pred             eEee---------cCceEEEEecCCCEEEEEEcC------CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe
Q 003271          677 GVFK---------SGATQMRFQPRLGRILAAAIE------NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS  741 (835)
Q Consensus       677 ~~~~---------~~i~~l~fsp~~~~ll~~s~d------g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs  741 (835)
                      ....         .......|+|+++.++.....      ..+...+...+......   ......+.+.+.+.+++...
T Consensus        82 ~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~  158 (281)
T d1k32a2          82 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVPLN---LGPATHILFADGRRVIGRNT  158 (281)
T ss_dssp             ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEECC---SCSCSEEEEETTEEEEEESC
T ss_pred             EeeecCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEEec---CCccceeeecCCCeEEEeec
Confidence            4321         225577899999988876542      23555666555543322   22222333333333333322


Q ss_pred             -CC-----------eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCC--eEEEEEcCCCcEEEeccC
Q 003271          742 -DE-----------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE--TLELWNMTENKTLTLSAH  806 (835)
Q Consensus       742 -Dg-----------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg--~I~IwDl~~~~~~~l~~h  806 (835)
                       +.           ...++.....    ................+.++  .++... .++  .|+++|+.+++...+..+
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~d~~g~~~~~lt~~  232 (281)
T d1k32a2         159 FELPHWKGYRGGTRGKIWIEVNSG----AFKKIVDMSTHVSSPVIVGH--RIYFITDIDGFGQIYSTDLDGKDLRKHTSF  232 (281)
T ss_dssp             SCCTTSTTCCSTTCCEEEEEEETT----EEEEEECCSSCCEEEEEETT--EEEEEECTTSSCEEEEEETTSCSCEECCCC
T ss_pred             cccceeeeeccCCcceeeeecccc----ceeeccCCccccceeeeecc--ccceecccccccceEEEeCCCCceEEeecC
Confidence             11           1111111111    11222223344455556655  333333 333  788999988887765544


Q ss_pred             CCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          807 DKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       807 ~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .. .....|+|||+.|+.. .++.|+++|
T Consensus       233 ~~-~~~~~~SpDG~~I~f~-~~~~l~~~d  259 (281)
T d1k32a2         233 TD-YYPRHLNTDGRRILFS-KGGSIYIFN  259 (281)
T ss_dssp             CS-SCEEEEEESSSCEEEE-ETTEEEEEC
T ss_pred             CC-cccccCcCCCCEEEEE-eCCEEEEEE
Confidence            32 2334689999987764 467787765

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.24  E-value=8e-05  Score=79.46  Aligned_cols=255  Identities=9%  Similarity=0.016  Sum_probs=155.1

Q ss_pred             EEEEeCCCeEEEEEcCCCeEEEEeccC---------------------------------------CCCeE--EEEECC-
Q 003271          570 LATGGHDKKAVLWCTESFTVKSTLEEH---------------------------------------TQWIT--DVRFSP-  607 (835)
Q Consensus       570 Lasgs~Dg~I~VWd~~t~~~i~~l~~h---------------------------------------~~~V~--sv~fsp-  607 (835)
                      |.+|+..|.|+|+-+.+++.+..+.-.                                       .+...  .+.|.. 
T Consensus        16 f~SgG~sG~v~v~G~PSmR~l~~ipvF~~~~~~G~G~~~es~~il~~~~~~~t~~~l~~~g~~~~~~GD~HHP~~S~TdG   95 (459)
T d1fwxa2          16 FWSSGQSGEMRILGIPSMRELMRVPVFNRCSATGWGQTNESVRIHERTMSERTKKFLAANGKRIHDNGDLHHVHMSFTEG   95 (459)
T ss_dssp             EECCBTTCEEEEEEETTCCEEEEEESSSCCTTTCTTTBHHHHHHHHTTCC--------------CCCCCBCCEEEEEETT
T ss_pred             EeeCCccceEEEEecCCcceEEEeeeecCCCCcccCcchhHHHHhhcccChhhhhhhhccCcccccCCCcCCCcccccCC
Confidence            667888999999988888777665210                                       01111  233432 


Q ss_pred             --CCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCc-EEEEEeCC------------------CcE
Q 003271          608 --SLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKED-LLCSCDNN------------------SEI  665 (835)
Q Consensus       608 --dg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~-ll~sgs~D------------------g~I  665 (835)
                        ||++|++.. .+.+|.+.|+++.+............+..+...++.+. +++..+.+                  +.+
T Consensus        96 tyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~  175 (459)
T d1fwxa2          96 KYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVF  175 (459)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEE
T ss_pred             ccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEE
Confidence              688888776 47899999999876422222233455676666544332 33233321                  346


Q ss_pred             EEEECCCCeeeeEee--cCceEEEEecCCCEEEEEEcC--------------------------------------CcEE
Q 003271          666 RYWSINNGSCAGVFK--SGATQMRFQPRLGRILAAAIE--------------------------------------NYIS  705 (835)
Q Consensus       666 ~iwDl~s~~~~~~~~--~~i~~l~fsp~~~~ll~~s~d--------------------------------------g~I~  705 (835)
                      .++|..+.+....+.  .....+.++++|+++++.+.+                                      +.+.
T Consensus       176 t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         176 TAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            788999888776654  446789999999999998753                                      1233


Q ss_pred             EEECCCC---eEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCC--------CCcceEEEeecCCCceEEE
Q 003271          706 ILDVETQ---VCRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSG--------SKGECIHELSCTGNKFHSC  772 (835)
Q Consensus       706 IwDl~t~---~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~--------~~~~~i~~l~~~~~~V~sv  772 (835)
                      +.|.++.   ..+..+. -....+.+.++|||+|+++++  +.+|.|+|++.-        ....++..-...+-.....
T Consensus       256 VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht  334 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHT  334 (459)
T ss_dssp             EEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEE
T ss_pred             eecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCcccc
Confidence            4443321   1111111 123356789999999999998  899999999632        1123333333345556677


Q ss_pred             EEeCCCCEEEEEEcCCeEEEEEcCCC----------cEE-EeccCCCCeeEE------EEeCCCCEEEEEE
Q 003271          773 VFHPTFPSLLVIGCYETLELWNMTEN----------KTL-TLSAHDKLVSSL------AASTVNGMVASAS  826 (835)
Q Consensus       773 ~fspdg~~L~sgs~dg~I~IwDl~~~----------~~~-~l~~h~~~V~~l------a~spdg~~LaSgs  826 (835)
                      +|+..|.-..+.--|..|.-|++...          .++ ++.-|- .+-.+      ...|+|++|++.+
T Consensus       335 ~fd~~g~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~v~y-~~gh~~~~~g~t~~~dgk~l~~~n  404 (459)
T d1fwxa2         335 AFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHY-QPGHLKTVMGETLDATNDWLVCLS  404 (459)
T ss_dssp             EECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSS-CEEEEEETTTTSTTCCSSEEEEEE
T ss_pred             ccCCCceEEEEeeccceEEEEecchhhhhhccccCCcceecccccc-CCCCCccCcCCcCCCCCCEEEEec
Confidence            89888853334446889999998432          333 333221 12222      2357888888876

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.24  E-value=0.00093  Score=67.51  Aligned_cols=243  Identities=8%  Similarity=-0.008  Sum_probs=156.2

Q ss_pred             CEEEEEeCCCeEEEEEcCCCe-----EEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCCceeEEeecCCC
Q 003271          568 KLLATGGHDKKAVLWCTESFT-----VKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPDYSLRTFTGHST  641 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~-----~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~~~~~~~~~h~~  641 (835)
                      .+|+.+. .+.|+-.+++...     ....+..+...+..|+|......|+-+. .++.|+..+++.... .........
T Consensus         2 ~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~-~~v~~~~~~   79 (263)
T d1npea_           2 THLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEP-TTIIRQDLG   79 (263)
T ss_dssp             EEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCC-EEEECTTCC
T ss_pred             CEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCc-EEEEEeccc
Confidence            3444443 2567777765432     1223333445688899998777666654 567898888876543 333333345


Q ss_pred             CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcC---CcEEEEECCCCeEE
Q 003271          642 TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIE---NYISILDVETQVCR  715 (835)
Q Consensus       642 ~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~d---g~I~IwDl~t~~~i  715 (835)
                      .+.+|+++.-++.++++-...+.|.+.++....+...+.   .....++++|..++++.....   ..|...++......
T Consensus        80 ~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~  159 (263)
T d1npea_          80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR  159 (263)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE
T ss_pred             cccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce
Confidence            788999988777787777778899999998665433332   336789999999998877654   23555566654433


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEE
Q 003271          716 LKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLEL  792 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~I  792 (835)
                      ......-.....+++++.+..|+.+.  .+.|...|+...   .....+.. ......+++.  +.+|+.+.. .+.|..
T Consensus       160 ~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~---~~~~v~~~-~~~P~~lav~--~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         160 ILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQP---GRRKVLEG-LQYPFAVTSY--GKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             EEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEE---EEEEEEEC-CCSEEEEEEE--TTEEEEEETTTTEEEE
T ss_pred             eeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCC---CeEEEECC-CCCcEEEEEE--CCEEEEEECCCCEEEE
Confidence            33333445678999998888777765  678999998754   22222232 2345677775  456777664 568999


Q ss_pred             EEcCCCcEEEec--cCCCCeeEEEEeCC
Q 003271          793 WNMTENKTLTLS--AHDKLVSSLAASTV  818 (835)
Q Consensus       793 wDl~~~~~~~l~--~h~~~V~~la~spd  818 (835)
                      .|..+++.....  ........|++.++
T Consensus       234 ~~~~~g~~~~~~~~~~~~~~~gi~v~~~  261 (263)
T d1npea_         234 MDLAISKEMDTFHPHKQTRLYGITIALS  261 (263)
T ss_dssp             EETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             EECCCCccceEECCCCCCCcceEEEeCC
Confidence            999988876433  33345556666553

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=98.17  E-value=0.0003  Score=74.33  Aligned_cols=270  Identities=9%  Similarity=0.040  Sum_probs=148.6

Q ss_pred             CEEEEEEeCCCCEEEEEeCCC-----------eEEEEEcCCCeEE--EE-eccCCCCeEEEEECCCCCEEEEEECC-CeE
Q 003271          557 KVESCHFSPDGKLLATGGHDK-----------KAVLWCTESFTVK--ST-LEEHTQWITDVRFSPSLSRLATSSAD-RTV  621 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg-----------~I~VWd~~t~~~i--~~-l~~h~~~V~sv~fspdg~~Latgs~D-g~I  621 (835)
                      .+...+...+|++++.|+.+.           .+.+||..+++-.  .. ...|.......++.+++++++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            344555567899988888531           3779999876432  11 22344445567889999999988765 589


Q ss_pred             EEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCC------CcEEEEECCCCeeeeEee---------------
Q 003271          622 RVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNN------SEIRYWSINNGSCAGVFK---------------  680 (835)
Q Consensus       622 ~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~D------g~I~iwDl~s~~~~~~~~---------------  680 (835)
                      .+||..+..............-.+.+..++++ +++.++.+      ..+.+||+.+.+....-.               
T Consensus       101 ~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~-v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~  179 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVARGYQSSATMSDGR-VFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLY  179 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSCCSSCEEEECTTSC-EEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGG
T ss_pred             eEecCccCcccccccccccccccceeeecCCc-eeeeccccccccccceeeeecCCCCceeecCCCccccccccccccee
Confidence            99999876542111111122234566777876 45455432      368999998876432111               


Q ss_pred             --cCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcC------CCC--CeEEEEE-cCCCCEEEEEe--CC----
Q 003271          681 --SGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQG------HKN--QVHSVCW-NTSGEYLASVS--DE----  743 (835)
Q Consensus       681 --~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~------h~~--~I~sl~f-spdg~~Lasgs--Dg----  743 (835)
                        .....+...+++..++.+...+.+.++|..+.........      +..  .-.++.+ ..++++++.++  ++    
T Consensus       180 ~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~  259 (387)
T d1k3ia3         180 RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSD  259 (387)
T ss_dssp             TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSB
T ss_pred             eccceeEEEEeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCc
Confidence              0011223334555555565666777777776644322110      110  1122222 34566666665  21    


Q ss_pred             ---eEEEEEcCCCCCcceEEEee---cCCCceEEEEEeCCCCEEEEEEcCC-----------eEEEEEcCCCcEEEeccC
Q 003271          744 ---LVRVWSIGSGSKGECIHELS---CTGNKFHSCVFHPTFPSLLVIGCYE-----------TLELWNMTENKTLTLSAH  806 (835)
Q Consensus       744 ---~I~IwDl~t~~~~~~i~~l~---~~~~~V~sv~fspdg~~L~sgs~dg-----------~I~IwDl~~~~~~~l~~h  806 (835)
                         ...++++.............   .......+.+..++++.+++|+.+.           .+.+||..+.+...+...
T Consensus       260 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~  339 (387)
T d1k3ia3         260 ATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN  339 (387)
T ss_dssp             CCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC
T ss_pred             ccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEECCCC
Confidence               33444443321111111111   1122234556678999888887531           578999988876654322


Q ss_pred             CC-C--eeEEEEeCCCCEEEEEEC
Q 003271          807 DK-L--VSSLAASTVNGMVASASH  827 (835)
Q Consensus       807 ~~-~--V~~la~spdg~~LaSgs~  827 (835)
                      .. .  -....+.+||++|+.|+.
T Consensus       340 ~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         340 SIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             SSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEEECCCCEEEEEeCC
Confidence            11 1  123345789999999884

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=0.0043  Score=62.45  Aligned_cols=228  Identities=8%  Similarity=-0.031  Sum_probs=148.6

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEE-CCCeEEEEecCCCC---ceeEEeecCCCCeE
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSS-ADRTVRVWDTENPD---YSLRTFTGHSTTVM  644 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs-~Dg~I~IWDl~t~~---~~~~~~~~h~~~V~  644 (835)
                      +|+.+.. ..|+..++++......+. ....+.+++|++....|+-+. .++.|...+++...   ............+.
T Consensus         3 fLl~s~~-~~I~~~~l~~~~~~~~~~-~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~   80 (266)
T d1ijqa1           3 YLFFTNR-HEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD   80 (266)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC
T ss_pred             EEEEECC-CeEEEEECCCCcceeeeC-CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc
Confidence            3444433 458888988765544443 445678999998777766654 45667777665321   11122333335677


Q ss_pred             EEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeec---CceEEEEecCCCEEEEEEcC--CcEEEEECCCCeEEEEEc
Q 003271          645 SLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKS---GATQMRFQPRLGRILAAAIE--NYISILDVETQVCRLKLQ  719 (835)
Q Consensus       645 sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~---~i~~l~fsp~~~~ll~~s~d--g~I~IwDl~t~~~i~~l~  719 (835)
                      .|++.+.+..++++....+.|.+.++...........   ....++++|..++++.....  +.|...++..........
T Consensus        81 glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~  160 (266)
T d1ijqa1          81 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVT  160 (266)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEEC
T ss_pred             eEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccc
Confidence            8999888888888888888999999987655444442   36788999988888887643  467777776554444444


Q ss_pred             CCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcC
Q 003271          720 GHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMT  796 (835)
Q Consensus       720 ~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~  796 (835)
                      ..-.....+++++.+..|+.+.  .+.|...++..... ..+............+++.  +.+|+.+. .++.|+..+..
T Consensus       161 ~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~-~~~~~~~~~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~  237 (266)
T d1ijqa1         161 ENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF--EDKVFWTDIINEAIFSANRL  237 (266)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE--TTEEEEEETTTTEEEEEETT
T ss_pred             cccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCE-EEEEeCCCcccccEEEEEE--CCEEEEEECCCCeEEEEECC
Confidence            4446678999999888777776  67999999866422 2333323223445677776  34566665 45688888877


Q ss_pred             CCcEE
Q 003271          797 ENKTL  801 (835)
Q Consensus       797 ~~~~~  801 (835)
                      ++...
T Consensus       238 ~g~~~  242 (266)
T d1ijqa1         238 TGSDV  242 (266)
T ss_dssp             TCCCC
T ss_pred             CCcce
Confidence            76544

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.99  E-value=0.0067  Score=60.94  Aligned_cols=216  Identities=8%  Similarity=0.034  Sum_probs=138.8

Q ss_pred             EEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCee----eeEee---cCc
Q 003271          611 RLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSC----AGVFK---SGA  683 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~----~~~~~---~~i  683 (835)
                      +|+.+. ...|+..++++...  ..+......+..|+|++..+.++.+-..++.|+..++.....    ...+.   ...
T Consensus         3 fLl~s~-~~~I~~~~l~~~~~--~~~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p   79 (266)
T d1ijqa1           3 YLFFTN-RHEVRKMTLDRSEY--TSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAP   79 (266)
T ss_dssp             EEEEEC-BSSEEEEETTSCCC--EEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCC
T ss_pred             EEEEEC-CCeEEEEECCCCcc--eeeeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCc
Confidence            344443 33588889987653  333345567889999998887777766677888777754221    11122   336


Q ss_pred             eEEEEecCCCEEEEEEcC-CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe---CCeEEEEEcCCCCCcceE
Q 003271          684 TQMRFQPRLGRILAAAIE-NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS---DELVRVWSIGSGSKGECI  759 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~s~d-g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs---Dg~I~IwDl~t~~~~~~i  759 (835)
                      ..+++.+.++.|+.+... +.|.++++........+.........++++|...+|+...   .+.|...++...   ...
T Consensus        80 ~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs---~~~  156 (266)
T d1ijqa1          80 DGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV---DIY  156 (266)
T ss_dssp             CEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC---CEE
T ss_pred             ceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCC---cee
Confidence            679999988888887754 6899999987766655655667789999999766666554   346766776543   222


Q ss_pred             EEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCcEEEe---ccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          760 HELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENKTLTL---SAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       760 ~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~~~~l---~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      ......-.....+++.+.+..|+.+.. .+.|...++.......+   ........+|++. .+.++++-..++.|+.
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~  233 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFS  233 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEE
Confidence            222333466789999998888888755 46999999977654322   2223456678876 3444444445555543

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.89  E-value=0.015  Score=58.62  Aligned_cols=245  Identities=10%  Similarity=0.159  Sum_probs=155.2

Q ss_pred             CeEEEEEcCCCe-EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcE
Q 003271          577 KKAVLWCTESFT-VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDL  655 (835)
Q Consensus       577 g~I~VWd~~t~~-~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~l  655 (835)
                      ..|.|.|+.+.. ..+.--.    .-+.-.+|..+.||.-+ ..++.|+|+++... ++.+. ...+|.--.|-.+.. +
T Consensus        45 ~~VvIidl~n~~~~~Rrpi~----AdsAIMhP~~~IiALra-g~~LQiFnletK~k-lks~~-~~e~VvfWkWis~~~-L  116 (327)
T d1utca2          45 AQVVIIDMNDPSNPIRRPIS----ADSAIMNPASKVIALKA-GKTLQIFNIEMKSK-MKAHT-MTDDVTFWKWISLNT-V  116 (327)
T ss_dssp             EEEEEEETTSTTSCEEEECC----CSEEEECSSSSEEEEEE-TTEEEEEETTTTEE-EEEEE-CSSCCCEEEESSSSE-E
T ss_pred             ceEEEEECCCCCcceecccc----hhhhhcCCCCcEEEEec-CCeEEEEehhHhhh-hceEE-cCCCcEEEEecCCCE-E
Confidence            478888887644 2322211    12345778888887776 56899999998664 44444 334666667776533 3


Q ss_pred             EEEEeCCCcEEEEECCCC-eeeeEeec-------CceEEEEecCCCEEEEEEc-------CCcEEEEECCCCeEEEEEcC
Q 003271          656 LCSCDNNSEIRYWSINNG-SCAGVFKS-------GATQMRFQPRLGRILAAAI-------ENYISILDVETQVCRLKLQG  720 (835)
Q Consensus       656 l~sgs~Dg~I~iwDl~s~-~~~~~~~~-------~i~~l~fsp~~~~ll~~s~-------dg~I~IwDl~t~~~i~~l~~  720 (835)
                      .+.+  +..|+-|+++.. ...+.+..       .+.....+++.++++..+-       .|.+.+|..+... ...+++
T Consensus       117 ~lVT--~taVYHW~~~g~s~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieG  193 (327)
T d1utca2         117 ALVT--DNAVYHWSMEGESQPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEG  193 (327)
T ss_dssp             EEEC--SSEEEEEESSSSCCCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECC
T ss_pred             EEEc--CCceEEEcccCCCCchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-Cccccc
Confidence            3333  568999999543 34555542       2556677888888776542       3678899888653 345666


Q ss_pred             CCCCeEEEEEcCCC---CEEEEEe----CCeEEEEEcCCCCCc-----ceEEEee----cCCCceEEEEEeCCCCEEEEE
Q 003271          721 HKNQVHSVCWNTSG---EYLASVS----DELVRVWSIGSGSKG-----ECIHELS----CTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       721 h~~~I~sl~fspdg---~~Lasgs----Dg~I~IwDl~t~~~~-----~~i~~l~----~~~~~V~sv~fspdg~~L~sg  784 (835)
                      |......+.+..+.   .+++.+.    .+.+.|.++......     +....+.    ...+-..++..++....+++.
T Consensus       194 haa~F~~~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyvi  273 (327)
T d1utca2         194 HAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLI  273 (327)
T ss_dssp             SEEEEEEECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEE
T ss_pred             eeeeeEEEEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEE
Confidence            65444444332211   2333333    358999999764221     1111221    123456788999999999999


Q ss_pred             EcCCeEEEEEcCCCcEEE-eccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          785 GCYETLELWNMTENKTLT-LSAHDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       785 s~dg~I~IwDl~~~~~~~-l~~h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      +..|.|++||++++.++. -.-....|...+-+.+..-+++...+|.|.
T Consensus       274 TK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         274 TKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             ecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEE
Confidence            999999999999999983 334456676666666656677777888764

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=0.0063  Score=61.10  Aligned_cols=218  Identities=7%  Similarity=-0.012  Sum_probs=139.5

Q ss_pred             EEEEEECCCeEEEEecCCCCc----eeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCc
Q 003271          611 RLATSSADRTVRVWDTENPDY----SLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGA  683 (835)
Q Consensus       611 ~Latgs~Dg~I~IWDl~t~~~----~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i  683 (835)
                      +|+.+. .+.|+-.+++....    ....+..+...+..|+|++.++.++.+-..++.|+..++........+.   ...
T Consensus         3 fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p   81 (263)
T d1npea_           3 HLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSP   81 (263)
T ss_dssp             EEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCE
T ss_pred             EEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccc
Confidence            444443 34677777764432    1122333445678899998888788777778899999998665554443   346


Q ss_pred             eEEEEecCCCEEEEEEc-CCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCe--EEEEEcCCCCCcce
Q 003271          684 TQMRFQPRLGRILAAAI-ENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS--DEL--VRVWSIGSGSKGEC  758 (835)
Q Consensus       684 ~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~--I~IwDl~t~~~~~~  758 (835)
                      ..++++..++.|+.+.. .+.|.+.++....+...+......+..++++|...+|+...  .+.  |...++...   ..
T Consensus        82 ~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~---~~  158 (263)
T d1npea_          82 EGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGT---NR  158 (263)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSC---CC
T ss_pred             cEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCC---Cc
Confidence            78999988888887765 47899999986654444444446789999999887777665  223  444455433   12


Q ss_pred             EEEeecCCCceEEEEEeCCCCEEEEEE-cCCeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEE
Q 003271          759 IHELSCTGNKFHSCVFHPTFPSLLVIG-CYETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKI  833 (835)
Q Consensus       759 i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~I  833 (835)
                      .......-.....+++.+.+..|+.+. ..+.|...|+.......+........+|++. ++.+.++-...+.|..
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~  233 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIA  233 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEE
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEE
Confidence            222223345678999999888887775 4569999999876655333323345678876 3434444334455543

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.85  E-value=0.0012  Score=74.43  Aligned_cols=263  Identities=10%  Similarity=0.072  Sum_probs=151.9

Q ss_pred             CCCEEEEEeCCCeEEEEEc-CCCeEEEEeccCCC----Ce-------EEEEECCCCCEEEEEECCCeEEEEecCCCCcee
Q 003271          566 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----WI-------TDVRFSPSLSRLATSSADRTVRVWDTENPDYSL  633 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~-~t~~~i~~l~~h~~----~V-------~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~  633 (835)
                      +|.++++.+.++.|...|. ++|+.+.++.....    .+       ..+++.  +..|+.++.|+.|...|.++++...
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~~~~g~l~alda~tG~~~w  139 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG--AGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee--CCeEEEEeCCCcEEeeehhhhhhhc
Confidence            4544444444688888887 47998877642110    00       123333  3467788899999999999988643


Q ss_pred             EEeec--C-CCCeEEE-EEcCCCCcEEEEEe-----CCCcEEEEECCCCeeeeEeecC----------------------
Q 003271          634 RTFTG--H-STTVMSL-DFHPSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFKSG----------------------  682 (835)
Q Consensus       634 ~~~~~--h-~~~V~sl-~fsp~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~~~----------------------  682 (835)
                      ..-..  + ...++.- .+. + ..+++.++     .+|.|+-+|+++++.+..+...                      
T Consensus       140 ~~~~~~~~~~~~~t~~p~v~-~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~  217 (571)
T d2ad6a1         140 EVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             cccccccccccceeecCeEe-C-CeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            32211  0 1111111 111 2 23443332     3678999999999988765311                      


Q ss_pred             -------------------ceEEEEecCCCEEEEEEc----------------CCcEEEEECCCCeEEEEEcCCCCC---
Q 003271          683 -------------------ATQMRFQPRLGRILAAAI----------------ENYISILDVETQVCRLKLQGHKNQ---  724 (835)
Q Consensus       683 -------------------i~~l~fsp~~~~ll~~s~----------------dg~I~IwDl~t~~~i~~l~~h~~~---  724 (835)
                                         -...++++..+.++.+..                ...+...|+++++.+..+..+...   
T Consensus       218 ~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd  297 (571)
T d2ad6a1         218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             cccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccc
Confidence                               023467777777777655                245888999999999887743221   


Q ss_pred             ------eEEEEEcCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecC-----------------------------
Q 003271          725 ------VHSVCWNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCT-----------------------------  765 (835)
Q Consensus       725 ------I~sl~fspdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~-----------------------------  765 (835)
                            .....+..++.   .++..+ +|.++++|..+++   .+......                             
T Consensus       298 ~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~---~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  374 (571)
T d2ad6a1         298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN---LIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHK  374 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCC
T ss_pred             cccccccceeeeeccCccccceeeccccceEEEEecCCCc---EeeeeccCCcccccccccccccccccCcccccccccC
Confidence                  11222223443   344455 8999999998874   32211100                             


Q ss_pred             ----------CCceEEEEEeCCCCEEEEEEcC-------------------------------------CeEEEEEcCCC
Q 003271          766 ----------GNKFHSCVFHPTFPSLLVIGCY-------------------------------------ETLELWNMTEN  798 (835)
Q Consensus       766 ----------~~~V~sv~fspdg~~L~sgs~d-------------------------------------g~I~IwDl~~~  798 (835)
                                ...-...+++|+...+++...+                                     |.|.-+|+.++
T Consensus       375 g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG  454 (571)
T d2ad6a1         375 GTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTG  454 (571)
T ss_dssp             EEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTC
T ss_pred             ceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCC
Confidence                      0001125677777766654433                                     35777888888


Q ss_pred             cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          799 KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       799 ~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +.+-...+.....+-.++..+.+|++|+.||.++-+|
T Consensus       455 ~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~D  491 (571)
T d2ad6a1         455 KAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALD  491 (571)
T ss_dssp             CEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             ceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEE
Confidence            8773222222222222333566888899999998775

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.71  E-value=0.011  Score=63.64  Aligned_cols=238  Identities=8%  Similarity=0.007  Sum_probs=133.7

Q ss_pred             EEEEEEeCCCCEEEEEe-C----CCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECC--------------
Q 003271          558 VESCHFSPDGKLLATGG-H----DKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSAD--------------  618 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs-~----Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~D--------------  618 (835)
                      +..+++|||+++||.+- .    -..|+++|+.+++.+...-. ......++|.+|+..|+....|              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLE-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEE-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccc-cccccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            45567899999988643 2    24699999999987742211 1122568899999988765433              


Q ss_pred             --CeEEEEecCCCCce-eEEeecCC--CCeEEEEEcCCCCcEEEEEeC--CCc--EEEEECCCCee--------eeEeec
Q 003271          619 --RTVRVWDTENPDYS-LRTFTGHS--TTVMSLDFHPSKEDLLCSCDN--NSE--IRYWSINNGSC--------AGVFKS  681 (835)
Q Consensus       619 --g~I~IWDl~t~~~~-~~~~~~h~--~~V~sl~fsp~g~~ll~sgs~--Dg~--I~iwDl~s~~~--------~~~~~~  681 (835)
                        ..|.+|.+.+.... ...+....  ..+..+..+.+++++++....  +..  +.+.|+.....        ...+..
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~  285 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN  285 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc
Confidence              25788888765432 23333332  346677788998887765532  333  44555443211        111111


Q ss_pred             C--ceEEEEecCCCEEEEEEc----CCcEEEEECCCCeE---EEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEE
Q 003271          682 G--ATQMRFQPRLGRILAAAI----ENYISILDVETQVC---RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVW  748 (835)
Q Consensus       682 ~--i~~l~fsp~~~~ll~~s~----dg~I~IwDl~t~~~---i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~Iw  748 (835)
                      .  .... +...++.++..+.    ++.|...++.....   ...+..+...+..-.+...+.+|+...  ++  .|+++
T Consensus       286 ~~~~~~~-~~~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~~l~v~  364 (430)
T d1qfma1         286 FEGEYDY-VTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLH  364 (430)
T ss_dssp             SSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEE
T ss_pred             cccceEE-EecCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEeEEEEE
Confidence            1  1112 2223445554443    35677777765321   222333444455444444455565544  54  78999


Q ss_pred             EcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcC----CeEEEEEcCCCcE
Q 003271          749 SIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCY----ETLELWNMTENKT  800 (835)
Q Consensus       749 Dl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~d----g~I~IwDl~~~~~  800 (835)
                      ++.++   ..........+.+..+...++...+...-.+    .+++.||+.+++.
T Consensus       365 ~~~~~---~~~~~~~~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~  417 (430)
T d1qfma1         365 DLATG---ALLKIFPLEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL  417 (430)
T ss_dssp             ETTTC---CEEEEECCCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred             ECCCC---cEEEecCCCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence            99876   3333333334555555555666655544333    4899999988753

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.65  E-value=0.0045  Score=65.65  Aligned_cols=189  Identities=16%  Similarity=0.194  Sum_probs=124.6

Q ss_pred             EEEEcC---CCCcEEEEEeCCCcEEEEECCCCeeeeEeec----CceEEEEe--cCCCEEEEEEcC--------------
Q 003271          645 SLDFHP---SKEDLLCSCDNNSEIRYWSINNGSCAGVFKS----GATQMRFQ--PRLGRILAAAIE--------------  701 (835)
Q Consensus       645 sl~fsp---~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~----~i~~l~fs--p~~~~ll~~s~d--------------  701 (835)
                      .+++..   ||+++++.-..+..|.+.|+++.++...+..    ....++..  |+..++++.+.+              
T Consensus        89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~  168 (459)
T d1fwxa2          89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV  168 (459)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred             cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence            455543   7888888888899999999999998775543    24445554  455677776652              


Q ss_pred             ----CcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEe-CC---------------eEEEEEc-----------
Q 003271          702 ----NYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVS-DE---------------LVRVWSI-----------  750 (835)
Q Consensus       702 ----g~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasgs-Dg---------------~I~IwDl-----------  750 (835)
                          +.+.++|..+.+....+.- ......+.++++|+++++.+ +.               .+.++++           
T Consensus       169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk  247 (459)
T d1fwxa2         169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD  247 (459)
T ss_dssp             G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred             hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence                2367899999888777653 34567889999999999876 21               2344443           


Q ss_pred             ------------CCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CCeEEEEEcCCCc------------EEEecc
Q 003271          751 ------------GSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YETLELWNMTENK------------TLTLSA  805 (835)
Q Consensus       751 ------------~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg~I~IwDl~~~~------------~~~l~~  805 (835)
                                  +.......+..+. .......|.++|||+++++++. +.+|.|+|++.-.            +.....
T Consensus       248 ~~eingV~VVD~~~~~~~~v~~yIP-VpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~e  326 (459)
T d1fwxa2         248 YQELNGVKVVDGRKEASSLFTRYIP-IANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPE  326 (459)
T ss_dssp             SEEETTEEEEECSGG--CSSEEEEE-EESSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCB
T ss_pred             cEEeCCceeecccccCCcceeEEEe-cCCCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEeecc
Confidence                        2211111222222 1234567899999999998887 5599999986321            122223


Q ss_pred             CCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          806 HDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       806 h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ..-....-+|+..|....|.--|..|.-|+
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~  356 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWN  356 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEE
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEe
Confidence            344556778888886566666788888885

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.64  E-value=0.005  Score=69.49  Aligned_cols=264  Identities=11%  Similarity=0.060  Sum_probs=154.7

Q ss_pred             CCCEEEEEeCCCeEEEEEc-CCCeEEEEeccCCC----------Ce-EEEEECCC----CCEEEEEECCCeEEEEecCCC
Q 003271          566 DGKLLATGGHDKKAVLWCT-ESFTVKSTLEEHTQ----------WI-TDVRFSPS----LSRLATSSADRTVRVWDTENP  629 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~-~t~~~i~~l~~h~~----------~V-~sv~fspd----g~~Latgs~Dg~I~IWDl~t~  629 (835)
                      +|.++++++.++.|...|. ++|+.+.++.....          .+ ..+++.++    ..+|+.++.|+.|.-.|.+++
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG  141 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETG  141 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTC
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccC
Confidence            4544455555677888886 57888877642110          11 23455432    346888999999999999998


Q ss_pred             CceeEEeecCC---CCeE-EEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEeecC-----------------
Q 003271          630 DYSLRTFTGHS---TTVM-SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSG-----------------  682 (835)
Q Consensus       630 ~~~~~~~~~h~---~~V~-sl~fsp~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~-----------------  682 (835)
                      +.+...-....   ..++ .-.+. + . .++.+.      ..|.|+-+|.++++.+..+...                 
T Consensus       142 ~~~w~~~~~d~~~~~~~t~~P~v~-~-~-~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~  218 (596)
T d1w6sa_         142 ETVWKVENSDIKVGSTLTIAPYVV-K-D-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNP  218 (596)
T ss_dssp             CEEEEEECCCGGGTCBCCSCCEEE-T-T-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCG
T ss_pred             ceeccccccccccccccccCCcEE-C-C-eEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccc
Confidence            86443322111   1111 11111 1 2 333443      2489999999999998765310                 


Q ss_pred             ------------------------ceEEEEecCCCEEEEEEcC----------------CcEEEEECCCCeEEEEEcC--
Q 003271          683 ------------------------ATQMRFQPRLGRILAAAIE----------------NYISILDVETQVCRLKLQG--  720 (835)
Q Consensus       683 ------------------------i~~l~fsp~~~~ll~~s~d----------------g~I~IwDl~t~~~i~~l~~--  720 (835)
                                              -..+.+++..+.++.+..+                ..|.-.|+++++.+..+..  
T Consensus       219 ~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~  298 (596)
T d1w6sa_         219 HYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTP  298 (596)
T ss_dssp             GGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESST
T ss_pred             cccccccccccCCCCceecCCCccccccccccCCCeeeccccccccccccccccccccccccccccccccccccccccee
Confidence                                    1234677777877776543                3488899999999887764  


Q ss_pred             CCC-------CeEEEE-EcCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecCC----------------------
Q 003271          721 HKN-------QVHSVC-WNTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCTG----------------------  766 (835)
Q Consensus       721 h~~-------~I~sl~-fspdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~----------------------  766 (835)
                      |..       .+..+. ...+|+   .++... +|.+.++|..+++   .+.......                      
T Consensus       299 ~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~---~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~  375 (596)
T d1w6sa_         299 HDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA---LVSANKLDDTVNVFKSVDLKTGQPVRDPEYG  375 (596)
T ss_dssp             TCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSTTCCSEEEECTTTCCEEECGGGC
T ss_pred             ccccCCccccceeeeeccccccccccceeccccccceeeecCCCCc---eeeeccccccccccccccccccccccCcccc
Confidence            221       122222 123443   455555 8899999998883   332211000                      


Q ss_pred             -----------------CceEEEEEeCCCCEEEEEEc---------------------------------------CCeE
Q 003271          767 -----------------NKFHSCVFHPTFPSLLVIGC---------------------------------------YETL  790 (835)
Q Consensus       767 -----------------~~V~sv~fspdg~~L~sgs~---------------------------------------dg~I  790 (835)
                                       ..-...+++|+...+++...                                       .|.|
T Consensus       376 ~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l  455 (596)
T d1w6sa_         376 TRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQI  455 (596)
T ss_dssp             CCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEE
T ss_pred             ccCCccceeEecccccccccCccccCCCCceEEecccccccccccccccccccccccccccccccCcccCcccCCCcceE
Confidence                             00012356666655554422                                       1467


Q ss_pred             EEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          791 ELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       791 ~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      .-||+.+++++-...+...+..-.++..+.+|+.|+.||.++.+|
T Consensus       456 ~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~D  500 (596)
T d1w6sa_         456 KAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARD  500 (596)
T ss_dssp             EEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEE
T ss_pred             EEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEE
Confidence            888888888773333333333333445677888899999998875

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.64  E-value=0.0071  Score=67.85  Aligned_cols=260  Identities=13%  Similarity=0.088  Sum_probs=152.1

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCC----------CCe-EEEEECCCCCEEEEEECCCeEEEEecCCCCceeE
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHT----------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLR  634 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----------~~V-~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~  634 (835)
                      +| .|++++.++.|.-+|.++|+.+.++....          ..+ ..+.+.  ...++.++.|+.+...|..+++....
T Consensus        77 ~g-~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~--~~~v~~~t~~g~l~alda~tG~~~W~  153 (573)
T d1kb0a2          77 DG-IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW--KGKVYVGAWDGRLIALDAATGKEVWH  153 (573)
T ss_dssp             TT-EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE--TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             CC-EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE--CCcEEEEecccceeeeccccccceec
Confidence            44 56677788999999999999998764211          011 122232  33677788899999999999886433


Q ss_pred             Eeec-CC-CCeE----EEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEeecC--------------------
Q 003271          635 TFTG-HS-TTVM----SLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSG--------------------  682 (835)
Q Consensus       635 ~~~~-h~-~~V~----sl~fsp~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~--------------------  682 (835)
                      .... +. ..+.    .+.+  + . .++.++      ..|.|+.+|.++|+.+..+...                    
T Consensus       154 ~~~~~~~~~~~~~~~~p~v~--~-~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~  229 (573)
T d1kb0a2         154 QNTFEGQKGSLTITGAPRVF--K-G-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (573)
T ss_dssp             EETTTTCCSSCBCCSCCEEE--T-T-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             ccCccCCcceEEeecceEEE--e-c-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCccccccccccc
Confidence            3221 11 1111    1111  1 2 233332      2468999999999988765310                    


Q ss_pred             --------------c-eEEEEecCCCEEEEEEc-------------------CCcEEEEECCCCeEEEEEcCCCC-----
Q 003271          683 --------------A-TQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKN-----  723 (835)
Q Consensus       683 --------------i-~~l~fsp~~~~ll~~s~-------------------dg~I~IwDl~t~~~i~~l~~h~~-----  723 (835)
                                    + ....+.+..+.++....                   ...|...|+++++.+..+.....     
T Consensus       230 ~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~  309 (573)
T d1kb0a2         230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDY  309 (573)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCC
T ss_pred             CCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccc
Confidence                          0 13567777777766442                   12477789999988877653221     


Q ss_pred             ----CeEEEEEcCCC---CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC-----------------------------
Q 003271          724 ----QVHSVCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG-----------------------------  766 (835)
Q Consensus       724 ----~I~sl~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~-----------------------------  766 (835)
                          .........++   .+++.++ +|.++++|..+++   .+.......                             
T Consensus       310 d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  386 (573)
T d1kb0a2         310 TSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGK---FISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAV  386 (573)
T ss_dssp             CCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECS
T ss_pred             cccceeeecceecCCCceeeeeeccccceeEEecccccc---ccccccccccccccccccccceeeeeeccccccceEEe
Confidence                12222222333   2445555 8899999998884   332221100                             


Q ss_pred             ------CceEEEEEeCCCCEEEEEEcC-------------------------------------------CeEEEEEcCC
Q 003271          767 ------NKFHSCVFHPTFPSLLVIGCY-------------------------------------------ETLELWNMTE  797 (835)
Q Consensus       767 ------~~V~sv~fspdg~~L~sgs~d-------------------------------------------g~I~IwDl~~  797 (835)
                            ..-...+++|+...+++...+                                           |.|.-||+.+
T Consensus       387 pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~t  466 (573)
T d1kb0a2         387 PGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVA  466 (573)
T ss_dssp             SCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTT
T ss_pred             ecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCC
Confidence                  001224677777766654332                                           3577788888


Q ss_pred             CcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          798 NKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       798 ~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      ++.+-...+..+...-.++..+.+|++|+.||.++.||
T Consensus       467 Gk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~D  504 (573)
T d1kb0a2         467 QKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYH  504 (573)
T ss_dssp             TEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEE
Confidence            88773222222322223344678888999999999876

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.64  E-value=0.0036  Score=70.12  Aligned_cols=261  Identities=13%  Similarity=0.073  Sum_probs=154.0

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEeccCCC----------Ce-EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEee
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLEEHTQ----------WI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~----------~V-~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      .|++++.++.|.-.|.++|+.+.++.....          .+ ..++.  .+..++.+..|+.|...|..+++.......
T Consensus        68 ~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~g~l~Alda~tG~~~w~~~~  145 (560)
T d1kv9a2          68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTLDGRLIALDAKTGKAIWSQQT  145 (560)
T ss_dssp             EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred             EEEEECCCCeEEEEeCCCCCEEEEECCCCCccccccccccccccCcce--eCCeEEEEeCCCEEEEEECCCCcEEeccCc
Confidence            566677789999999999999987642111          00 11111  144688888999999999998886433322


Q ss_pred             cCCCCeEEEEEcC--CCCcEEEEEe------CCCcEEEEECCCCeeeeEeecC---------------------------
Q 003271          638 GHSTTVMSLDFHP--SKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSG---------------------------  682 (835)
Q Consensus       638 ~h~~~V~sl~fsp--~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~---------------------------  682 (835)
                      ........+.-.|  .+. .++.+.      ..|.|+-+|.++++.+..+...                           
T Consensus       146 ~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (560)
T d1kv9a2         146 TDPAKPYSITGAPRVVKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWK  224 (560)
T ss_dssp             SCTTSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHH
T ss_pred             cCcccceeeeeeeeeecC-cccccccceeccccceEEEEECCCceEEeeeeeccccccCCcccccccccccccccccccc
Confidence            1111111110011  012 233332      2367999999999988766410                           


Q ss_pred             -------ceEEEEecCCCEEEEEEc-------------------CCcEEEEECCCCeEEEEEcCCCCCe---------EE
Q 003271          683 -------ATQMRFQPRLGRILAAAI-------------------ENYISILDVETQVCRLKLQGHKNQV---------HS  727 (835)
Q Consensus       683 -------i~~l~fsp~~~~ll~~s~-------------------dg~I~IwDl~t~~~i~~l~~h~~~I---------~s  727 (835)
                             -..+.+.+..+.++.+..                   ...|.-+|+++++.+..+......+         .-
T Consensus       225 ~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l  304 (560)
T d1kv9a2         225 LGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITL  304 (560)
T ss_dssp             HCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEE
T ss_pred             ccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeee
Confidence                   112567777777776442                   2357888999999887766422221         11


Q ss_pred             EEEcCCC---CEEEEEe-CCeEEEEEcCCCCCcceEEEeecCC------------------------------------C
Q 003271          728 VCWNTSG---EYLASVS-DELVRVWSIGSGSKGECIHELSCTG------------------------------------N  767 (835)
Q Consensus       728 l~fspdg---~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~------------------------------------~  767 (835)
                      +.+..++   ..++.+. +|.++++|..+++   .+.......                                    .
T Consensus       305 ~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~---~i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~  381 (560)
T d1kv9a2         305 AELNIDGKPRKVLMQAPKNGFFYVLDRTNGK---LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAH  381 (560)
T ss_dssp             EEEEETTEEEEEEEECCTTSEEEEEETTTCC---EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSS
T ss_pred             eeeecCCceeeeeeecCccceEEEEecCCCc---ccccccccccccccccChhhccccccccccccccceeeeecccccc
Confidence            2222233   2444455 8899999998883   332221100                                    0


Q ss_pred             ceEEEEEeCCCCEEEEEEcC------------------------------------CeEEEEEcCCCcEEEeccCCCCee
Q 003271          768 KFHSCVFHPTFPSLLVIGCY------------------------------------ETLELWNMTENKTLTLSAHDKLVS  811 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~d------------------------------------g~I~IwDl~~~~~~~l~~h~~~V~  811 (835)
                      .....+++|+...+++...+                                    |.|.-||+.+++.+-.........
T Consensus       382 ~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~  461 (560)
T d1kv9a2         382 NWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWN  461 (560)
T ss_dssp             CSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred             ccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCC
Confidence            01245677777776665422                                    468889999999883333333333


Q ss_pred             EEEEeCCCCEEEEEECCCcEEEeC
Q 003271          812 SLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       812 ~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                      +-.+...+.+|+.|+.||.++-+|
T Consensus       462 gg~l~TagglVF~G~~dg~l~A~D  485 (560)
T d1kv9a2         462 GGTLSTAGNLVFQGTAAGQMHAYS  485 (560)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEE
T ss_pred             CceeEECCCEEEEECCCCcEEEEE
Confidence            333445677888899999998875

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.60  E-value=0.0056  Score=68.64  Aligned_cols=252  Identities=10%  Similarity=-0.000  Sum_probs=140.3

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCC----CCeEEEEECCCCCEEEEEE------CCCeEEEEecCCCCceeEEee
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITDVRFSPSLSRLATSS------ADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----~~V~sv~fspdg~~Latgs------~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      ..|+.++.|+.|.-.|.++++.+.......    ..++.--.-.++ .++.+.      .+|.|+-+|+.+++...+...
T Consensus       116 ~~i~~~~~~g~l~alda~tG~~~w~~~~~~~~~~~~~t~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  194 (571)
T d2ad6a1         116 GQIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVAKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA  194 (571)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred             CeEEEEeCCCcEEeeehhhhhhhccccccccccccceeecCeEeCC-eEEEeeccccccccCcEEEEECCCCcEEEEEec
Confidence            367778899999999999999886653211    111111111133 444444      378899999999886443321


Q ss_pred             cC------------------------------------CCCe-EEEEEcCCCCcEEEEEeC----------------CCc
Q 003271          638 GH------------------------------------STTV-MSLDFHPSKEDLLCSCDN----------------NSE  664 (835)
Q Consensus       638 ~h------------------------------------~~~V-~sl~fsp~g~~ll~sgs~----------------Dg~  664 (835)
                      ..                                    ...+ ...++++... +++.+..                ...
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g-~~y~~tg~~~p~~~~~r~g~n~~s~s  273 (571)
T d2ad6a1         195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLN-LFYYGSGNPAPWNETMRPGDNKWTMT  273 (571)
T ss_dssp             SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTT-EEEEECCCCSCSCGGGSCSCCTTTTE
T ss_pred             cCCcccccccccccccccccCcccccccccCCcccccCCCccccccccchhcC-eeeeecccccCccccccccccccccc
Confidence            10                                    0112 2345566654 3333322                246


Q ss_pred             EEEEECCCCeeeeEeecC------------ceEEEEecCCC---EEEEEEcCCcEEEEECCCCeEEEEEcCCC--C----
Q 003271          665 IRYWSINNGSCAGVFKSG------------ATQMRFQPRLG---RILAAAIENYISILDVETQVCRLKLQGHK--N----  723 (835)
Q Consensus       665 I~iwDl~s~~~~~~~~~~------------i~~l~fsp~~~---~ll~~s~dg~I~IwDl~t~~~i~~l~~h~--~----  723 (835)
                      |...|+++++.+..+...            .....+..+++   .++.++.+|.++++|.++++.+.......  .    
T Consensus       274 vvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~~~~~~~~~~~~~  353 (571)
T d2ad6a1         274 IWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKK  353 (571)
T ss_dssp             EEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEE
T ss_pred             eeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEecCCCcEeeeeccCCccccccc
Confidence            788899999988766521            11122233333   35567788999999999998875432110  0    


Q ss_pred             -------C--------------------------eEEEEEcCCCCEEEEEe-C---------------------------
Q 003271          724 -------Q--------------------------VHSVCWNTSGEYLASVS-D---------------------------  742 (835)
Q Consensus       724 -------~--------------------------I~sl~fspdg~~Lasgs-D---------------------------  742 (835)
                             +                          -...+++|+..+++... +                           
T Consensus       354 ~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  433 (571)
T d2ad6a1         354 VDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYP  433 (571)
T ss_dssp             ECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEE
T ss_pred             ccccccccccCcccccccccCceEEEeccccccccccceECCCCceEEEeccccccccccccccccCCccccccceeecc
Confidence                   0                          01245666666665543 2                           


Q ss_pred             ----------CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCe--
Q 003271          743 ----------ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLV--  810 (835)
Q Consensus       743 ----------g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V--  810 (835)
                                |.|.-+|+.++   +.+-...... ...+-.+.-.+..+++++.|+.++.||.++++.+-...-...+  
T Consensus       434 ~~~~~~~~~~G~l~AiD~~TG---~~~W~~~~~~-~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a  509 (571)
T d2ad6a1         434 GPNGPTKKEMGQIRAFDLTTG---KAKWTKWEKF-AAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIG  509 (571)
T ss_dssp             CTTSTTSCCCEEEEEECTTTC---CEEEEEEESS-CCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCS
T ss_pred             ccCCcccCCcccEEEeccCCC---ceeeEcCCCC-CCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEECCCCcee
Confidence                      24555555555   2222222111 1111112224567888999999999999999998322222222  


Q ss_pred             eEEEEeCCCC-EEEEE
Q 003271          811 SSLAASTVNG-MVASA  825 (835)
Q Consensus       811 ~~la~spdg~-~LaSg  825 (835)
                      .-+.|..||+ ||+..
T Consensus       510 ~P~ty~~dGkqYi~v~  525 (571)
T d2ad6a1         510 SPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             CCEEEEETTEEEEEEE
T ss_pred             cceEEEECCEEEEEEE
Confidence            2255666887 55443

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=0.058  Score=54.22  Aligned_cols=225  Identities=13%  Similarity=0.189  Sum_probs=146.8

Q ss_pred             EEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecC
Q 003271          560 SCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGH  639 (835)
Q Consensus       560 sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h  639 (835)
                      +.-.+|..+.||.-+ ..++.|||+++.+.++.+.-. ..|.-=.|-.+ +.|+..+ +..|+-|+++....+.+.+..|
T Consensus        67 sAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~-e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMT-DDVTFWKWISL-NTVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECS-SCCCEEEESSS-SEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcC-CCcEEEEecCC-CEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            345678888877766 568999999999999888644 45666677654 3555553 4579999997666667777766


Q ss_pred             C----CCeEEEEEcCCCCcEEEEEe------CCCcEEEEECCCCeeeeEeecCceEEE-EecCC----CEEEEEEc----
Q 003271          640 S----TTVMSLDFHPSKEDLLCSCD------NNSEIRYWSINNGSCAGVFKSGATQMR-FQPRL----GRILAAAI----  700 (835)
Q Consensus       640 ~----~~V~sl~fsp~g~~ll~sgs------~Dg~I~iwDl~s~~~~~~~~~~i~~l~-fsp~~----~~ll~~s~----  700 (835)
                      .    ..|..-..+++.+.++++|=      -.|.+.+|..+... ...+.++..+.+ +-.+|    ..+++-..    
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~-sQ~ieGhaa~F~~~~~~g~~~~~~lf~fa~r~~~  221 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQA  221 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE-EEEECCSEEEEEEECCTTCSSCEEEEEEEEEETT
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc-CccccceeeeeEEEEcCCCCCCceEEEEEECCCC
Confidence            4    35777778888888877662      23678889887543 334444433322 21111    12333222    


Q ss_pred             CCcEEEEECCCCe--------EEEEE-cC---CCCCeEEEEEcCCCCEEEEEe-CCeEEEEEcCCCCCcceEEEeecCCC
Q 003271          701 ENYISILDVETQV--------CRLKL-QG---HKNQVHSVCWNTSGEYLASVS-DELVRVWSIGSGSKGECIHELSCTGN  767 (835)
Q Consensus       701 dg~I~IwDl~t~~--------~i~~l-~~---h~~~I~sl~fspdg~~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~~~  767 (835)
                      .+.++|.++....        ....+ ..   ..+-..++..++.-.+++..+ -|.|++||+.++   .++..-+....
T Consensus       222 ~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTg---t~i~~nRIs~~  298 (327)
T d1utca2         222 GGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETG---TCIYMNRISGE  298 (327)
T ss_dssp             EEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTC---CEEEEEECCSS
T ss_pred             CcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccc---cEEEEeecCCC
Confidence            3678888886421        11111 11   234455778888877888777 999999999999   77777776677


Q ss_pred             ceEEEEEeCCCCEEEEEEcCCeEEE
Q 003271          768 KFHSCVFHPTFPSLLVIGCYETLEL  792 (835)
Q Consensus       768 ~V~sv~fspdg~~L~sgs~dg~I~I  792 (835)
                      .|...+-+.+..-+++...+|.|..
T Consensus       299 ~iF~~a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         299 TIFVTAPHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred             ceEEeccCCCCceEEEECCCCeEEE
Confidence            7766666666556677777775543

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.33  E-value=0.052  Score=60.57  Aligned_cols=263  Identities=9%  Similarity=0.002  Sum_probs=149.0

Q ss_pred             CEEEEEeCCCeEEEEEcCCCeEEEEeccCC--------CCe-EEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeec
Q 003271          568 KLLATGGHDKKAVLWCTESFTVKSTLEEHT--------QWI-TDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       568 ~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~--------~~V-~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      ..|++++.++.|.-.|.++|+.+.++....        ..+ ..+++.  +..++.++.|+.+...|..+++........
T Consensus        69 g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~~--~~~i~~~t~~~~l~alda~tG~~~W~~~~~  146 (582)
T d1flga_          69 GVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIY--GDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             TEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEE--TTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             CEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceEe--CCceEEecCCCeEEEecccccceeeeeccc
Confidence            366677888999999999999997763211        011 122232  346788899999999999998764333221


Q ss_pred             CCCC-----eEEEEEcC--CCCcEEEEE------eCCCcEEEEECCCCeeeeEeecC-----------------------
Q 003271          639 HSTT-----VMSLDFHP--SKEDLLCSC------DNNSEIRYWSINNGSCAGVFKSG-----------------------  682 (835)
Q Consensus       639 h~~~-----V~sl~fsp--~g~~ll~sg------s~Dg~I~iwDl~s~~~~~~~~~~-----------------------  682 (835)
                      ....     -.-+.+.+  .+..+++.+      ...+.|.-+|.++++.+..+...                       
T Consensus       147 ~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~~  226 (582)
T d1flga_         147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCccccccccccccccccccccC
Confidence            1100     00011111  122233332      23567888999999877654210                       


Q ss_pred             ---------------------ceEEEEecCCCEEEEEEc------------------------CCcEEEEECCCCeEEEE
Q 003271          683 ---------------------ATQMRFQPRLGRILAAAI------------------------ENYISILDVETQVCRLK  717 (835)
Q Consensus       683 ---------------------i~~l~fsp~~~~ll~~s~------------------------dg~I~IwDl~t~~~i~~  717 (835)
                                           -..+++.+..+.++++..                        ...|.-.|+++++.+..
T Consensus       227 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W~  306 (582)
T d1flga_         227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhhc
Confidence                                 123567788888877652                        23477889999998887


Q ss_pred             EcC--CCCCe-------EEEEE-cCCCC---EEEEEe-CCeEEEEEcCCCCCcceEEEeecC------------------
Q 003271          718 LQG--HKNQV-------HSVCW-NTSGE---YLASVS-DELVRVWSIGSGSKGECIHELSCT------------------  765 (835)
Q Consensus       718 l~~--h~~~I-------~sl~f-spdg~---~Lasgs-Dg~I~IwDl~t~~~~~~i~~l~~~------------------  765 (835)
                      +..  |.-..       .-+.+ ..++.   .++... ++.++++|..+++   .+......                  
T Consensus       307 ~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~---~i~~~~~~~~~~~~~~~d~~~~~~~~  383 (582)
T d1flga_         307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGK---LQNAFPFVDNITWASHIDLKTGRPVE  383 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCC---EEEEEESSSCCCSEEEECTTTCCEEE
T ss_pred             ccccccccccccccccccccccccccccccceeEeecccccEEeecccCCc---ccccccccCcccccccccccccccee
Confidence            754  22111       11122 12333   333344 7788888888773   22111000                  


Q ss_pred             ---------------------------CCceEEEEEeCCCCEEEEEEcC-------------------------------
Q 003271          766 ---------------------------GNKFHSCVFHPTFPSLLVIGCY-------------------------------  787 (835)
Q Consensus       766 ---------------------------~~~V~sv~fspdg~~L~sgs~d-------------------------------  787 (835)
                                                 .......+++|+...+++...+                               
T Consensus       384 ~~~~~~~~~~~~~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  463 (582)
T d1flga_         384 REGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDD  463 (582)
T ss_dssp             CTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSS
T ss_pred             ccccccccccccccccceEEECCCccCCcccccceecCCCCceeeeccccccccccccccccccccccccCccccccccC
Confidence                                       0011123455555555543322                               


Q ss_pred             --CeEEEEEcCCCcEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEEEeC
Q 003271          788 --ETLELWNMTENKTLTLSAHDKLVSSLAASTVNGMVASASHDKCVKIWK  835 (835)
Q Consensus       788 --g~I~IwDl~~~~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~IWd  835 (835)
                        |.|.-+|+.+++++-......++..-.++..+.+|++|+.||.++-||
T Consensus       464 ~~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~D  513 (582)
T d1flga_         464 HVGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFD  513 (582)
T ss_dssp             CSEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEE
T ss_pred             CCCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEE
Confidence              468888889988872222223333323445677888899999998875

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.32  E-value=0.027  Score=62.64  Aligned_cols=255  Identities=12%  Similarity=0.116  Sum_probs=142.6

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCCC-CeEEEEECC--CCCEEEEEE------CCCeEEEEecCCCCceeEEee
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHTQ-WITDVRFSP--SLSRLATSS------ADRTVRVWDTENPDYSLRTFT  637 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~-~V~sv~fsp--dg~~Latgs------~Dg~I~IWDl~t~~~~~~~~~  637 (835)
                      +..++.+..|+.|.-.|..+++.+.....+.. .-..+.-.|  ....++++.      ..|.|.-+|..+++...+...
T Consensus       117 ~~~v~~~~~~g~l~Alda~tG~~~w~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t  196 (560)
T d1kv9a2         117 GDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT  196 (560)
T ss_dssp             BTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred             CCeEEEEeCCCEEEEEECCCCcEEeccCccCcccceeeeeeeeeecCcccccccceeccccceEEEEECCCceEEeeeee
Confidence            34678888899999999999999877643221 001111111  122344432      236799999999886444432


Q ss_pred             cC-----------------------------CCCe-EEEEEcCCCCcEEEEEeC------------------CCcEEEEE
Q 003271          638 GH-----------------------------STTV-MSLDFHPSKEDLLCSCDN------------------NSEIRYWS  669 (835)
Q Consensus       638 ~h-----------------------------~~~V-~sl~fsp~g~~ll~sgs~------------------Dg~I~iwD  669 (835)
                      ..                             ...+ ..+.+.+....+++..+.                  ...|...|
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~~~~l~y~~tgn~~~~~~~~~~~~~g~n~~s~sivAld  276 (560)
T d1kv9a2         197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR  276 (560)
T ss_dssp             SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             ccccccCCccccccccccccccccccccccCCCCcccccccccccCeeeecCCCCcccccccccccCCccccceeeEEec
Confidence            11                             1111 224556665544332211                  24677789


Q ss_pred             CCCCeeeeEeecC------------ceEEEEecCC---CEEEEEEcCCcEEEEECCCCeEEEEEcCCC-CCe--------
Q 003271          670 INNGSCAGVFKSG------------ATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHK-NQV--------  725 (835)
Q Consensus       670 l~s~~~~~~~~~~------------i~~l~fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~-~~I--------  725 (835)
                      +++++.+..+...            ..-+.+..++   ..++.+..+|.++++|..+++.+.....-. ...        
T Consensus       277 ~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~~~d~~~~  356 (560)
T d1kv9a2         277 PDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATG  356 (560)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTC
T ss_pred             CCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcccccccccccccccccChhhc
Confidence            9999887655411            1112222233   245567778999999999998876543110 000        


Q ss_pred             ---------------------------EEEEEcCCCCEEEEEe-C-----------------------------------
Q 003271          726 ---------------------------HSVCWNTSGEYLASVS-D-----------------------------------  742 (835)
Q Consensus       726 ---------------------------~sl~fspdg~~Lasgs-D-----------------------------------  742 (835)
                                                 ...+++|+..+++... +                                   
T Consensus       357 ~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~  436 (560)
T d1kv9a2         357 RPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVV  436 (560)
T ss_dssp             CEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGC
T ss_pred             cccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCcccccCCCCccc
Confidence                                       1345566666655433 2                                   


Q ss_pred             -CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-EeccC-CCCeeEEEEeCCC
Q 003271          743 -ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLSAH-DKLVSSLAASTVN  819 (835)
Q Consensus       743 -g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~~h-~~~V~~la~spdg  819 (835)
                       |.|.-||+.++   +.+-.+... .....-.+.-.+..+++++.|+.++.||.++|+.+ ...-. ...-.-+.+..+|
T Consensus       437 ~G~l~A~D~~tG---k~~W~~~~~-~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dG  512 (560)
T d1kv9a2         437 SGALLAWDPVKQ---KAAWKVPYP-THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAG  512 (560)
T ss_dssp             EEEEEEEETTTT---EEEEEEEES-SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred             ccceEEEeCCCC---eEeeeccCC-CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence             35667777776   444333221 12222223445667888999999999999999998 32211 1111124555677


Q ss_pred             C-EEEEE
Q 003271          820 G-MVASA  825 (835)
Q Consensus       820 ~-~LaSg  825 (835)
                      + +|+..
T Consensus       513 kqyv~v~  519 (560)
T d1kv9a2         513 RQYVAIM  519 (560)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            6 55443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.27  E-value=0.013  Score=61.11  Aligned_cols=231  Identities=9%  Similarity=0.017  Sum_probs=121.2

Q ss_pred             CCCCEEEEEEeCCCCEEEEEeCC-CeEEEEEcCCCeEEEEecc-CCCCeEEEEECCCCCEEEEEECC------CeEEEEe
Q 003271          554 STSKVESCHFSPDGKLLATGGHD-KKAVLWCTESFTVKSTLEE-HTQWITDVRFSPSLSRLATSSAD------RTVRVWD  625 (835)
Q Consensus       554 H~~~V~sl~fSpdg~~Lasgs~D-g~I~VWd~~t~~~i~~l~~-h~~~V~sv~fspdg~~Latgs~D------g~I~IWD  625 (835)
                      |.....++++.+||++++.|+.+ ..+.+||..+..-...-.. ....-.+++..+|+++++.++.+      ..+.+||
T Consensus        74 ~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd  153 (387)
T d1k3ia3          74 HDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYS  153 (387)
T ss_dssp             CCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEE
T ss_pred             cccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeec
Confidence            43344567888999999988765 5899999987665432211 11223456777899999988753      3689999


Q ss_pred             cCCCCceeEE--------eecCCC-----CeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee-----------c
Q 003271          626 TENPDYSLRT--------FTGHST-----TVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK-----------S  681 (835)
Q Consensus       626 l~t~~~~~~~--------~~~h~~-----~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~-----------~  681 (835)
                      ..+.......        ...+..     .-..+...++++ +++.+..++.+.++|..+........           .
T Consensus       154 ~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  232 (387)
T d1k3ia3         154 PSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS-VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAM  232 (387)
T ss_dssp             TTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC-EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCB
T ss_pred             CCCCceeecCCCcccccccccccceeeccceeEEEEeCCCC-EEEecCcCCcEEecCcccCcEeeccccccCcccCcccc
Confidence            8876531110        000000     001111223333 55566667777888887765432211           0


Q ss_pred             CceEEEEec-CCCEEEEEEcC--------CcEEEEECCC---CeEEEEEcC---CCCCeEEEEEcCCCCEEEEEe-CC--
Q 003271          682 GATQMRFQP-RLGRILAAAIE--------NYISILDVET---QVCRLKLQG---HKNQVHSVCWNTSGEYLASVS-DE--  743 (835)
Q Consensus       682 ~i~~l~fsp-~~~~ll~~s~d--------g~I~IwDl~t---~~~i~~l~~---h~~~I~sl~fspdg~~Lasgs-Dg--  743 (835)
                      ...++.+.. +++.+++++..        ....++++..   .........   +...-.+.+..++|++++.|+ +.  
T Consensus       233 ~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~  312 (387)
T d1k3ia3         233 CGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGI  312 (387)
T ss_dssp             TCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCC
T ss_pred             cccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCc
Confidence            112233333 34445555432        1233444332   111121111   122233556668999888876 21  


Q ss_pred             ---------eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc
Q 003271          744 ---------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC  786 (835)
Q Consensus       744 ---------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~  786 (835)
                               ++.+||..+.. ...+.........-....+.+||+.+++|+.
T Consensus       313 ~~~~~~~~~~ve~Ydp~~~~-W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         313 PFEDSTPVFTPEIYVPEQDT-FYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             TTCCCSBCCCCEEEEGGGTE-EEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             cCCCCcEeceEEEEECCCCe-EEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence                     47889987651 1111111111111123456799999888884

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.26  E-value=0.028  Score=63.12  Aligned_cols=149  Identities=10%  Similarity=0.028  Sum_probs=89.8

Q ss_pred             CCEEEEEeCCCeEEEEEcCCCeEEEEeccCC----CCeEE-EEECCCCCEEEEEEC------CCeEEEEecCCCCceeEE
Q 003271          567 GKLLATGGHDKKAVLWCTESFTVKSTLEEHT----QWITD-VRFSPSLSRLATSSA------DRTVRVWDTENPDYSLRT  635 (835)
Q Consensus       567 g~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~----~~V~s-v~fspdg~~Latgs~------Dg~I~IWDl~t~~~~~~~  635 (835)
                      +.+|+.++.|+.|.-.|.++++.+..+....    ..++. ..+.  +..++++..      .|.|+-+|+.+++...+.
T Consensus       121 ~~~v~~~t~dg~l~Alda~tG~~~w~~~~~d~~~~~~~t~~P~v~--~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~  198 (596)
T d1w6sa_         121 PALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRA  198 (596)
T ss_dssp             CCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEE
T ss_pred             ceEEEEEeCCCCeEeeccccCceeccccccccccccccccCCcEE--CCeEEEeeccccccccCceEEEECCCCcEEEEe
Confidence            3478889999999999999999998774211    11111 1111  334555543      489999999999864443


Q ss_pred             eecC-------------------------------------CCCeEEEEEcCCCCcEEEEEeC---------------CC
Q 003271          636 FTGH-------------------------------------STTVMSLDFHPSKEDLLCSCDN---------------NS  663 (835)
Q Consensus       636 ~~~h-------------------------------------~~~V~sl~fsp~g~~ll~sgs~---------------Dg  663 (835)
                      ....                                     ...-..+++.+....+++..+.               ..
T Consensus       199 ~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~  278 (596)
T d1w6sa_         199 YATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTM  278 (596)
T ss_dssp             ESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSS
T ss_pred             eccCCccccccccccccccccccccccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccc
Confidence            3211                                     0111234556665533332211               24


Q ss_pred             cEEEEECCCCeeeeEeecC------------ceEEE-EecCC---CEEEEEEcCCcEEEEECCCCeEEEE
Q 003271          664 EIRYWSINNGSCAGVFKSG------------ATQMR-FQPRL---GRILAAAIENYISILDVETQVCRLK  717 (835)
Q Consensus       664 ~I~iwDl~s~~~~~~~~~~------------i~~l~-fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~  717 (835)
                      .|...|+++++.+..+...            ...+. ...++   ..++....+|.++++|..+++.+..
T Consensus       279 sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~  348 (596)
T d1w6sa_         279 TIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSA  348 (596)
T ss_dssp             EEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecCCCCceeee
Confidence            5888999999988766421            11111 12233   2466677789999999999988754

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.08  E-value=0.11  Score=55.33  Aligned_cols=222  Identities=9%  Similarity=0.019  Sum_probs=122.9

Q ss_pred             CCCCeEEEEECCCCCEEEEEE-CC----CeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeC---------
Q 003271          596 HTQWITDVRFSPSLSRLATSS-AD----RTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDN---------  661 (835)
Q Consensus       596 h~~~V~sv~fspdg~~Latgs-~D----g~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~---------  661 (835)
                      +.-.+..++++|++++++.+- .+    ..|+++|+.+++.....+..  .....++|.+++..++++.-.         
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~  200 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLER--VKFSCMAWTHDGKGMFYNAYPQQDGKSDGT  200 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEE--ECSCCEEECTTSSEEEEEECCCCSSCCSSS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccc--ccccceEEcCCCCEEEEEEeccccCccccc
Confidence            333455678899999887543 23    37999999998753333322  123568899999888776522         


Q ss_pred             ------CCcEEEEECCCCee--eeEeec---C--ceEEEEecCCCEEEEEEcC---C--cEEEEECCCCe--------EE
Q 003271          662 ------NSEIRYWSINNGSC--AGVFKS---G--ATQMRFQPRLGRILAAAIE---N--YISILDVETQV--------CR  715 (835)
Q Consensus       662 ------Dg~I~iwDl~s~~~--~~~~~~---~--i~~l~fsp~~~~ll~~s~d---g--~I~IwDl~t~~--------~i  715 (835)
                            ...|++|.+.+...  ...+..   .  ...+..+.++.+++.....   .  .+.+.|+....        ..
T Consensus       201 ~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~  280 (430)
T d1qfma1         201 ETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWV  280 (430)
T ss_dssp             CCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCE
T ss_pred             ccccCCcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCccccccccccee
Confidence                  12588888876532  222221   1  3456678888887765432   2  34555554321        12


Q ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEe----CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE-cCC--
Q 003271          716 LKLQGHKNQVHSVCWNTSGEYLASVS----DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG-CYE--  788 (835)
Q Consensus       716 ~~l~~h~~~I~sl~fspdg~~Lasgs----Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs-~dg--  788 (835)
                      ..+......+.-+. +.++.+++...    ++.|...++...........+..+...+..-.+...+.+|++.. .++  
T Consensus       281 ~~~~~~~~~~~~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~~~~~~~  359 (430)
T d1qfma1         281 KLIDNFEGEYDYVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCYLHDVKN  359 (430)
T ss_dssp             EEECSSSSCEEEEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEEEETTEE
T ss_pred             EeecccccceEEEe-cCCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEEEcCCEe
Confidence            22332233333333 23334444443    35777778776533222222333444455545555555666665 444  


Q ss_pred             eEEEEEcCCCcEEEec-cCCCCeeEEEEeCCCC
Q 003271          789 TLELWNMTENKTLTLS-AHDKLVSSLAASTVNG  820 (835)
Q Consensus       789 ~I~IwDl~~~~~~~l~-~h~~~V~~la~spdg~  820 (835)
                      .|+++++.+++...+. ...+.|..+...++..
T Consensus       360 ~l~v~~~~~~~~~~~~~~~~~sv~~~~~~~~~~  392 (430)
T d1qfma1         360 TLQLHDLATGALLKIFPLEVGSVVGYSGQKKDT  392 (430)
T ss_dssp             EEEEEETTTCCEEEEECCCSSEEEEEECCTTCS
T ss_pred             EEEEEECCCCcEEEecCCCCceEeeccCCCCCC
Confidence            7999999988876432 2334455554444444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.06  E-value=0.085  Score=58.63  Aligned_cols=248  Identities=9%  Similarity=0.038  Sum_probs=134.1

Q ss_pred             EEEEEeCCCeEEEEEcCCCeEEEEeccC--CCCeEEEEECC--CCCEEEEEEC------CCeEEEEecCCCCceeEEeec
Q 003271          569 LLATGGHDKKAVLWCTESFTVKSTLEEH--TQWITDVRFSP--SLSRLATSSA------DRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       569 ~Lasgs~Dg~I~VWd~~t~~~i~~l~~h--~~~V~sv~fsp--dg~~Latgs~------Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      .++.++.|+.+.-.|.++++.+......  ...-..+.-.|  -...+++++.      .|.|+.+|..+++...+....
T Consensus       130 ~v~~~t~~g~l~alda~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~  209 (573)
T d1kb0a2         130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSV  209 (573)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESS
T ss_pred             cEEEEecccceeeeccccccceecccCccCCcceEEeecceEEEeccEEEeeccccccccceEEEEecCCccceeeeeec
Confidence            5677788999999999999988655322  11100111111  1234454432      478999999998864433221


Q ss_pred             C------------------------------CCCe-EEEEEcCCCCcEEEEEe------------------CCCcEEEEE
Q 003271          639 H------------------------------STTV-MSLDFHPSKEDLLCSCD------------------NNSEIRYWS  669 (835)
Q Consensus       639 h------------------------------~~~V-~sl~fsp~g~~ll~sgs------------------~Dg~I~iwD  669 (835)
                      .                              ...+ ....+.++...+++..+                  ....|...|
T Consensus       210 ~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld  289 (573)
T d1kb0a2         210 PGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALD  289 (573)
T ss_dssp             CCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred             cccCCCCCCcccccccccccCCCCceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEec
Confidence            1                              0111 13455565443332111                  112577788


Q ss_pred             CCCCeeeeEeecC------------ceEEEEecCC---CEEEEEEcCCcEEEEECCCCeEEEEEcCCCCC----------
Q 003271          670 INNGSCAGVFKSG------------ATQMRFQPRL---GRILAAAIENYISILDVETQVCRLKLQGHKNQ----------  724 (835)
Q Consensus       670 l~s~~~~~~~~~~------------i~~l~fsp~~---~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~----------  724 (835)
                      +++++....+...            ........++   ..++.++.+|.++++|..+++.+.........          
T Consensus       290 ~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~~~~~~~  369 (573)
T d1kb0a2         290 PDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGK  369 (573)
T ss_dssp             TTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSC
T ss_pred             ccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccccccccc
Confidence            8888876554311            1112222233   34566777899999999999887654321100          


Q ss_pred             -------------------------eEEEEEcCCCCEEEEEe-CC-----------------------------------
Q 003271          725 -------------------------VHSVCWNTSGEYLASVS-DE-----------------------------------  743 (835)
Q Consensus       725 -------------------------I~sl~fspdg~~Lasgs-Dg-----------------------------------  743 (835)
                                               -...+++|+..+++... +.                                   
T Consensus       370 ~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  449 (573)
T d1kb0a2         370 PIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAE  449 (573)
T ss_dssp             EEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSS
T ss_pred             eeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccccccccccccccC
Confidence                                     01235667666665543 32                                   


Q ss_pred             --------eEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEeccCCCCee--EE
Q 003271          744 --------LVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTLSAHDKLVS--SL  813 (835)
Q Consensus       744 --------~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l~~h~~~V~--~l  813 (835)
                              .|.-||+.++   +.+-...... +...-..+-.+..|++++.|+.++.||.++|+.+-...-...+.  -+
T Consensus       450 p~~~~~~G~l~AiD~~tG---k~~W~~~~~~-p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~  525 (573)
T d1kb0a2         450 PPKSKPFGRLLAWDPVAQ---KAAWSVEHVS-PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPS  525 (573)
T ss_dssp             CCCSCCEEEEEEEETTTT---EEEEEEEESS-SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCE
T ss_pred             CCCCCCcccEEEeCCCCC---ceEeeecCCC-CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCE
Confidence                    3445555554   3333222211 11111233356788889999999999999999982221111111  14


Q ss_pred             EEeCCCC
Q 003271          814 AASTVNG  820 (835)
Q Consensus       814 a~spdg~  820 (835)
                      .|..+|+
T Consensus       526 ty~~~Gk  532 (573)
T d1kb0a2         526 TYMVDGR  532 (573)
T ss_dssp             EEEETTE
T ss_pred             EEEECCE
Confidence            4556777

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.87  E-value=0.26  Score=50.69  Aligned_cols=183  Identities=8%  Similarity=0.045  Sum_probs=103.4

Q ss_pred             EEEEECCCCCEEEEEEC------------CCeEEEEecCCCCceeEEeecCC-------CCeEEEEE--cCCCCcEEEEE
Q 003271          601 TDVRFSPSLSRLATSSA------------DRTVRVWDTENPDYSLRTFTGHS-------TTVMSLDF--HPSKEDLLCSC  659 (835)
Q Consensus       601 ~sv~fspdg~~Latgs~------------Dg~I~IWDl~t~~~~~~~~~~h~-------~~V~sl~f--sp~g~~ll~sg  659 (835)
                      -+|+..|++..+++++.            .|.|.++|+.+.......+....       -....+++  .+++...|++.
T Consensus        38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vv  117 (340)
T d1v04a_          38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVV  117 (340)
T ss_dssp             CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEE
T ss_pred             ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEE
Confidence            35666666665555432            48899999987654333322111       12344444  44566555554


Q ss_pred             e---CCCcEEEEECCCCe--ee--eEeec----CceEEEEecCCCEEEEEEc---------------CCcEEEEECCCCe
Q 003271          660 D---NNSEIRYWSINNGS--CA--GVFKS----GATQMRFQPRLGRILAAAI---------------ENYISILDVETQV  713 (835)
Q Consensus       660 s---~Dg~I~iwDl~s~~--~~--~~~~~----~i~~l~fsp~~~~ll~~s~---------------dg~I~IwDl~t~~  713 (835)
                      .   ...+|.+|++....  ..  .++..    ....+.+..++..+++-..               -+...+|....++
T Consensus       118 nH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~  197 (340)
T d1v04a_         118 NHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPND  197 (340)
T ss_dssp             ECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSC
T ss_pred             eccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCc
Confidence            3   35678888875432  21  22222    2567888888776665211               1223344444343


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEe--CCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEE
Q 003271          714 CRLKLQGHKNQVHSVCWNTSGEYLASVS--DELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIG  785 (835)
Q Consensus       714 ~i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs  785 (835)
                      ...... .-.....|+++||+++|+.+.  .+.|++|++...........+. -...+-.+.+.+.+..+++++
T Consensus       198 ~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         198 VRVVAE-GFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEEE-EESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEEE
T ss_pred             eEEEcC-CCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEEE
Confidence            332222 234678999999999888887  7899999997654333333332 355667788876444445544

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=96.84  E-value=0.06  Score=55.93  Aligned_cols=185  Identities=15%  Similarity=0.217  Sum_probs=117.7

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEEC------CCCCEEEEEEC--C--CeEEEEecCCCCceeEE
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFS------PSLSRLATSSA--D--RTVRVWDTENPDYSLRT  635 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fs------pdg~~Latgs~--D--g~I~IWDl~t~~~~~~~  635 (835)
                      +..+++.....+-|++||+. |+.+..+.  .+.+..|..-      .....|++++.  +  .+|.+|.+......+..
T Consensus        39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~  115 (353)
T d1h6la_          39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (353)
T ss_dssp             GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred             CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence            45577777777779999985 77777764  3455555543      22223555552  2  36888988644433333


Q ss_pred             eecC-------CCCeEEEEE--cCC-CCcEEEEEeCCCcEEEEECC---CC----eeeeEee--cCceEEEEecCCCEEE
Q 003271          636 FTGH-------STTVMSLDF--HPS-KEDLLCSCDNNSEIRYWSIN---NG----SCAGVFK--SGATQMRFQPRLGRIL  696 (835)
Q Consensus       636 ~~~h-------~~~V~sl~f--sp~-g~~ll~sgs~Dg~I~iwDl~---s~----~~~~~~~--~~i~~l~fsp~~~~ll  696 (835)
                      +...       ...|+.+|+  ++. +..+++....+|.+..|.+.   .+    +.++.+.  ..+..+.+....+.|+
T Consensus       116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Ly  195 (353)
T d1h6la_         116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLY  195 (353)
T ss_dssp             CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEE
Confidence            3221       124667776  554 44556677788999888763   22    2344454  4477888999999999


Q ss_pred             EEEcCCcEEEEECCC-----CeEEEEEcC--CCCCeEEEEEcC--CCC-EEEEEe--CCeEEEEEcCCC
Q 003271          697 AAAIENYISILDVET-----QVCRLKLQG--HKNQVHSVCWNT--SGE-YLASVS--DELVRVWSIGSG  753 (835)
Q Consensus       697 ~~s~dg~I~IwDl~t-----~~~i~~l~~--h~~~I~sl~fsp--dg~-~Lasgs--Dg~I~IwDl~t~  753 (835)
                      ++-.+..|..++.+.     ...+....+  ....+..|+.-.  ++. ||++++  +++..|||..+.
T Consensus       196 isEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             EEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             EecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            999988888887652     233333322  456777777543  333 666666  889999998764

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.33  E-value=0.91  Score=49.96  Aligned_cols=78  Identities=9%  Similarity=0.035  Sum_probs=45.5

Q ss_pred             CeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEE-Eec-cCCCCeeEEEEeCCCC
Q 003271          743 ELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTL-TLS-AHDKLVSSLAASTVNG  820 (835)
Q Consensus       743 g~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~-~l~-~h~~~V~~la~spdg~  820 (835)
                      |.|.-+|+.++   +.+-....+ .++..-.++..+..|++++.|+.++.||.++|+.+ ... .....-.-+.|..+|+
T Consensus       466 G~l~AiD~~TG---~i~W~~~~~-~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~  541 (582)
T d1flga_         466 GSLRAMDPVSG---KVVWEHKEH-LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGE  541 (582)
T ss_dssp             EEEEEECTTTC---CEEEEEEES-SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTE
T ss_pred             CeEEEEcCCCC---cEEeecCCC-CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCE
Confidence            35666666666   333333322 22222233456678889999999999999999998 322 1111112256667886


Q ss_pred             -EEEE
Q 003271          821 -MVAS  824 (835)
Q Consensus       821 -~LaS  824 (835)
                       ||+.
T Consensus       542 qYv~i  546 (582)
T d1flga_         542 QYLGV  546 (582)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence             4443

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=96.33  E-value=0.33  Score=45.78  Aligned_cols=218  Identities=10%  Similarity=0.021  Sum_probs=115.3

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEE-CCCCCEEEEE------ECCCeEEEEecCCCCceeEEeec
Q 003271          566 DGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRF-SPSLSRLATS------SADRTVRVWDTENPDYSLRTFTG  638 (835)
Q Consensus       566 dg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~f-spdg~~Latg------s~Dg~I~IWDl~t~~~~~~~~~~  638 (835)
                      +.++|+++...|.|.++-+..++.+.--+   .+|..... .+.-.++..+      -.-..|.+-++.......+.-..
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~vkLtk---ePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~sp  101 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGETVKLNR---EPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAV  101 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSCEECCS---SCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTS
T ss_pred             CCcEEEEEeccceEEEEEEeCCEEEEEec---ccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCC
Confidence            34478888889999999888777664332   23322211 1111112111      11234555555533322222111


Q ss_pred             CCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEeecCceEEEEecCCCEEEEEEc--CCc--EEEEECCCCeE
Q 003271          639 HSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFKSGATQMRFQPRLGRILAAAI--ENY--ISILDVETQVC  714 (835)
Q Consensus       639 h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~--dg~--I~IwDl~t~~~  714 (835)
                      ..-.|.++++  +++.++++|+....+.+|-++.++..+...-+..+..-+-.+++++-.+.  .+.  +.+-|+.++. 
T Consensus       102 k~vRI~S~~y--ddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~g~~~sfF~adl~SG~-  178 (313)
T d2hu7a1         102 KPMRILSGVD--TGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGG-  178 (313)
T ss_dssp             CSBEEEEEEE--CSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEETTEEEEEEEETTTEE-
T ss_pred             ceEEEEEeee--cCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeecCCcceEEEEecccCC-
Confidence            1234555555  46678899999999999999988876554433222222223333332211  111  2223443332 


Q ss_pred             EEEEcCCCCCeEEEEEcCCCCEEEEEe--CC--eEEEEEcCCCCCcceEEEeec--------CCCceEEEEEeCCCCEEE
Q 003271          715 RLKLQGHKNQVHSVCWNTSGEYLASVS--DE--LVRVWSIGSGSKGECIHELSC--------TGNKFHSCVFHPTFPSLL  782 (835)
Q Consensus       715 i~~l~~h~~~I~sl~fspdg~~Lasgs--Dg--~I~IwDl~t~~~~~~i~~l~~--------~~~~V~sv~fspdg~~L~  782 (835)
                      +..+....+.++.....++.+. +++-  -|  ...-+|+++++    ...+..        ....|.-+-+.|+++.++
T Consensus       179 lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~----yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~i  253 (313)
T d2hu7a1         179 LRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGS----VEDLELPSKDFSSYRPTAITWLGYLPDGRLAV  253 (313)
T ss_dssp             EEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC----EEECCCSSCHHHHHCCSEEEEEEECTTSCEEE
T ss_pred             EEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCc----eeeeecCcccceeecceEEEeeeeCCCCcEEE
Confidence            2333444555666666666665 3333  22  22244766542    222211        123456677999999989


Q ss_pred             EEEcCCeEEEEE
Q 003271          783 VIGCYETLELWN  794 (835)
Q Consensus       783 sgs~dg~I~IwD  794 (835)
                      ++-.||.-.+|.
T Consensus       254 iakrdG~s~lF~  265 (313)
T d2hu7a1         254 VARREGRSAVFI  265 (313)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEecCCchheee
Confidence            999999888886

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.65  E-value=0.56  Score=48.22  Aligned_cols=181  Identities=12%  Similarity=0.180  Sum_probs=107.4

Q ss_pred             CcEEEEEeCCCcEEEEECCCCeeeeEeec-CceEEEEe----cCC--CEEEEEEc-C---CcEEEEECCC-CeEEEEEcC
Q 003271          653 EDLLCSCDNNSEIRYWSINNGSCAGVFKS-GATQMRFQ----PRL--GRILAAAI-E---NYISILDVET-QVCRLKLQG  720 (835)
Q Consensus       653 ~~ll~sgs~Dg~I~iwDl~s~~~~~~~~~-~i~~l~fs----p~~--~~ll~~s~-d---g~I~IwDl~t-~~~i~~l~~  720 (835)
                      +.++++...++-|++||+. |+.+..+.. .+..+..-    -.+  ..+++++. +   ..|.+|.+.. ...+..+..
T Consensus        40 ~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          40 NSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             GCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             ccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            4466677777789999996 777766653 34443322    122  23455553 2   3577777652 223333332


Q ss_pred             C-------CCCeEEEEE--cCC-CCEEEE-Ee-CCeEEEEEcCCCCC----cceEEEeecCCCceEEEEEeCCCCEEEEE
Q 003271          721 H-------KNQVHSVCW--NTS-GEYLAS-VS-DELVRVWSIGSGSK----GECIHELSCTGNKFHSCVFHPTFPSLLVI  784 (835)
Q Consensus       721 h-------~~~I~sl~f--spd-g~~Las-gs-Dg~I~IwDl~t~~~----~~~i~~l~~~~~~V~sv~fspdg~~L~sg  784 (835)
                      .       ...+..+|+  ++. |.+.+. .. +|.+..|.+.....    ...++.+. ....+..|++.+....|+++
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~-~~~q~EGCVvDde~~~Lyis  197 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK-MNSQTEGMAADDEYGSLYIA  197 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE-CSSCEEEEEEETTTTEEEEE
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC-CCCccceEEEeCCCCcEEEe
Confidence            1       124667776  554 554444 44 88998887743321    23444454 35679999999999999999


Q ss_pred             EcCCeEEEEEcCCC-----cEEE-ec--cCCCCeeEEEEeC--CCC-EE-EEEECCCcEEEeC
Q 003271          785 GCYETLELWNMTEN-----KTLT-LS--AHDKLVSSLAAST--VNG-MV-ASASHDKCVKIWK  835 (835)
Q Consensus       785 s~dg~I~IwDl~~~-----~~~~-l~--~h~~~V~~la~sp--dg~-~L-aSgs~DG~V~IWd  835 (835)
                      -.+..|+.++.+..     ..+. ..  .....+..|++-.  ++. +| ||.-.|++..|||
T Consensus       198 EE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vyd  260 (353)
T d1h6la_         198 EEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYE  260 (353)
T ss_dssp             ETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEE
T ss_pred             cCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEe
Confidence            99888887876422     2222 21  2356788887654  322 44 4444677788875

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=95.32  E-value=1.8  Score=43.97  Aligned_cols=184  Identities=15%  Similarity=0.140  Sum_probs=105.4

Q ss_pred             EEEEEEeCCCCEEEEEeC------------CCeEEEEEcCCCeEE-EEe--ccCC-----CCeEEEEE--CCCCC-EEEE
Q 003271          558 VESCHFSPDGKLLATGGH------------DKKAVLWCTESFTVK-STL--EEHT-----QWITDVRF--SPSLS-RLAT  614 (835)
Q Consensus       558 V~sl~fSpdg~~Lasgs~------------Dg~I~VWd~~t~~~i-~~l--~~h~-----~~V~sv~f--spdg~-~Lat  614 (835)
                      -..|+..|||..+++++.            .|.|.++|+.+.+.. ..+  .+..     -....+.+  ..++. +|++
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            456788899877766542            388999998764321 111  1110     12234443  44565 3555


Q ss_pred             EE---CCCeEEEEecCCCCceeEE---ee-cCCCCeEEEEEcCCCCcEEEEEe-----------------CCCcEEEEEC
Q 003271          615 SS---ADRTVRVWDTENPDYSLRT---FT-GHSTTVMSLDFHPSKEDLLCSCD-----------------NNSEIRYWSI  670 (835)
Q Consensus       615 gs---~Dg~I~IWDl~t~~~~~~~---~~-~h~~~V~sl~fsp~g~~ll~sgs-----------------~Dg~I~iwDl  670 (835)
                      ..   ...+|.||++......+..   +. .......+|++..++. +++|-.                 ..+.|..||.
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~-fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~  195 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH-FYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP  195 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE-EEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC-EEEecCccCcChhhhhhhHhhcCCceeEEEEcC
Confidence            43   3568999988755432222   11 1224578888888765 565631                 1234445554


Q ss_pred             CCCeeeeEeecCceEEEEecCCCEEEEEEc-CCcEEEEECCCCeEE--EEEcCCCCCeEEEEEcC-CCCEEEEEeC
Q 003271          671 NNGSCAGVFKSGATQMRFQPRLGRILAAAI-ENYISILDVETQVCR--LKLQGHKNQVHSVCWNT-SGEYLASVSD  742 (835)
Q Consensus       671 ~s~~~~~~~~~~i~~l~fsp~~~~ll~~s~-dg~I~IwDl~t~~~i--~~l~~h~~~I~sl~fsp-dg~~LasgsD  742 (835)
                      ...+.+..--.....++++|++++++++.. .+.|++|++......  .....-....-.+.+.+ +|.+.+++..
T Consensus       196 ~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~~p  271 (340)
T d1v04a_         196 NDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGCHP  271 (340)
T ss_dssp             SCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEEES
T ss_pred             CceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEECC
Confidence            433322222244788999999998888775 578999998744221  11112345567788875 5666666543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.09  E-value=0.39  Score=46.87  Aligned_cols=212  Identities=7%  Similarity=-0.034  Sum_probs=97.6

Q ss_pred             eEEEEEcCCCeEEE--EeccCCCCeEEEEECCCCCEEEEEEC---------CCeEEEEecCCCCceeEEeec--C-CCCe
Q 003271          578 KAVLWCTESFTVKS--TLEEHTQWITDVRFSPSLSRLATSSA---------DRTVRVWDTENPDYSLRTFTG--H-STTV  643 (835)
Q Consensus       578 ~I~VWd~~t~~~i~--~l~~h~~~V~sv~fspdg~~Latgs~---------Dg~I~IWDl~t~~~~~~~~~~--h-~~~V  643 (835)
                      .|.+||+++.+-..  .+......-..+.+  ++.+++.|+.         -..+.+||..+...  .....  . ....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w--~~~~~~p~~r~~~   95 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQW--SPCAPMSVPRNRI   95 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCEEEETTEEEECCCEEEEETTTTEE--EECCCCSSCCBTC
T ss_pred             eEEEEECCCCeEEECCCCCCccceeEEEEE--CCEEEEEeCcccCCCCccccchhhhcccccccc--cccccccceecce
Confidence            57899998865432  22221112222222  4556666542         13567888776543  11111  0 1111


Q ss_pred             EEEEEcCCCCcEEEEEeCCC-----cEEEEECCCCeeeeEeecC----ceEEEEecCCCEEEEEEcC-----CcEEEEEC
Q 003271          644 MSLDFHPSKEDLLCSCDNNS-----EIRYWSINNGSCAGVFKSG----ATQMRFQPRLGRILAAAIE-----NYISILDV  709 (835)
Q Consensus       644 ~sl~fsp~g~~ll~sgs~Dg-----~I~iwDl~s~~~~~~~~~~----i~~l~fsp~~~~ll~~s~d-----g~I~IwDl  709 (835)
                      .++.+  + ..+++.++.++     .+..+|..+..........    ....... .+..++.++.+     ..+..||.
T Consensus        96 ~~~~~--~-~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~  171 (288)
T d1zgka1          96 GVGVI--D-GHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYP  171 (288)
T ss_dssp             EEEEE--T-TEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEET
T ss_pred             ecccc--c-eeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeec
Confidence            22222  3 33555554333     3445676665433221111    1122222 33444454442     45788888


Q ss_pred             CCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCCCcceEEEeec-CCCce-EEEEEeCCCCE
Q 003271          710 ETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGSKGECIHELSC-TGNKF-HSCVFHPTFPS  780 (835)
Q Consensus       710 ~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~~~~~i~~l~~-~~~~V-~sv~fspdg~~  780 (835)
                      .+.+....-.. ......+++.. ++.+++.++ +     ..+.+||..+..    ...+.. ..... .+++. -+++.
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~----~~~~~~~p~~r~~~~~~~-~~~~l  245 (288)
T d1zgka1         172 ERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETET----WTFVAPMKHRRSALGITV-HQGRI  245 (288)
T ss_dssp             TTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTE----EEECCCCSSCCBSCEEEE-ETTEE
T ss_pred             cccccccccccccccccccccce-eeeEEEecCccccccccceeeeeeccee----eecccCccCcccceEEEE-ECCEE
Confidence            87654432211 11112233333 344555543 3     256778876641    122211 11111 22232 35677


Q ss_pred             EEEEEcCC-----eEEEEEcCCCcEEEe
Q 003271          781 LLVIGCYE-----TLELWNMTENKTLTL  803 (835)
Q Consensus       781 L~sgs~dg-----~I~IwDl~~~~~~~l  803 (835)
                      +++|+.++     .|.+||+.+++...+
T Consensus       246 ~v~GG~~~~~~~~~v~~yd~~~~~W~~~  273 (288)
T d1zgka1         246 YVLGGYDGHTFLDSVECYDPDTDTWSEV  273 (288)
T ss_dssp             EEECCBCSSCBCCEEEEEETTTTEEEEE
T ss_pred             EEEecCCCCeecceEEEEECCCCEEEEC
Confidence            77776544     589999998775533

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.41  E-value=1.3  Score=45.88  Aligned_cols=171  Identities=15%  Similarity=0.125  Sum_probs=99.5

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcC-------------CCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEE
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTE-------------SFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRV  623 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~-------------t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~I  623 (835)
                      ...-+++++...+|+.|+.++ ++|..++             ..+....+    ..|..++|+.+  .|+.. .++.+..
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~-~~~~l~~  109 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVS-TRNALYS  109 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEE-ESSEEEE
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEE-eCCCEEE
Confidence            356788888877888888774 6676532             11222222    25888999755  45554 4566888


Q ss_pred             EecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeE--------eecCceEEEEecCCCEE
Q 003271          624 WDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGV--------FKSGATQMRFQPRLGRI  695 (835)
Q Consensus       624 WDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~--------~~~~i~~l~fsp~~~~l  695 (835)
                      ++...-.. .........++..+.++|.   .++.+..++.+.++++..++....        ......+++|++.+..+
T Consensus       110 ~~~~~l~~-~~~~~~~~~~~~~~~~~p~---~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws~kgkq~  185 (381)
T d1xipa_         110 LDLEELSE-FRTVTSFEKPVFQLKNVNN---TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLKDRSFQS  185 (381)
T ss_dssp             EESSSTTC-EEEEEECSSCEEEEEECSS---EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEETTSCEEE
T ss_pred             EEeecccc-ccccccccccccceecCCc---eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEEEEeCCcEEE
Confidence            88776443 3333344567888888876   345666789999999988764322        22445566666665555


Q ss_pred             EEEEcCCcEEE-EECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEE
Q 003271          696 LAAAIENYISI-LDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASV  740 (835)
Q Consensus       696 l~~s~dg~I~I-wDl~t~~~i~~l~~h~~~I~sl~fspdg~~Lasg  740 (835)
                      +++..+. ..+ -++.....+.........|.+|.|-.+..++++.
T Consensus       186 v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy  230 (381)
T d1xipa_         186 FAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVF  230 (381)
T ss_dssp             EEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred             EEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEE
Confidence            5543221 111 1111110000001134467888998777777655

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=94.12  E-value=4.3  Score=42.69  Aligned_cols=54  Identities=13%  Similarity=0.162  Sum_probs=37.7

Q ss_pred             CCeEEEEECCCCCEEEEEECCCeEEEEecCCCCcee-EEe------ecCCCCeEEEEEcCC
Q 003271          598 QWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSL-RTF------TGHSTTVMSLDFHPS  651 (835)
Q Consensus       598 ~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~-~~~------~~h~~~V~sl~fsp~  651 (835)
                      ..-++|+|.||+++|++--.+|.|++++..++.... ..+      ..-......|+|+|+
T Consensus        27 ~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            457799999999988876557999999877665311 111      112245788999985

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.84  E-value=0.39  Score=46.83  Aligned_cols=201  Identities=6%  Similarity=-0.080  Sum_probs=91.0

Q ss_pred             eEEEEecCCCCceeE-EeecCCCCeEEEEEcCCCCcEEEEEeC---------CCcEEEEECCCCeeeeEeecC---ceEE
Q 003271          620 TVRVWDTENPDYSLR-TFTGHSTTVMSLDFHPSKEDLLCSCDN---------NSEIRYWSINNGSCAGVFKSG---ATQM  686 (835)
Q Consensus       620 ~I~IWDl~t~~~~~~-~~~~h~~~V~sl~fsp~g~~ll~sgs~---------Dg~I~iwDl~s~~~~~~~~~~---i~~l  686 (835)
                      .|.+||+.+...... .+....... +++.. + ..+++.|+.         -..+.+||..+.+....-..+   ....
T Consensus        20 ~~~~yd~~t~~W~~~~~~p~~R~~~-~~~~~-~-~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~   96 (288)
T d1zgka1          20 YLEAYNPSNGTWLRLADLQVPRSGL-AGCVV-G-GLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIG   96 (288)
T ss_dssp             CEEEEETTTTEEEECCCCSSCCBSC-EEEEE-T-TEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCE
T ss_pred             eEEEEECCCCeEEECCCCCCcccee-EEEEE-C-CEEEEEeCcccCCCCccccchhhhcccccccccccccccceeccee
Confidence            577888887653111 111111111 22222 2 346655542         246788898876654322111   1111


Q ss_pred             EEecCCCEEEEEEcC-----CcEEEEECCCCeEEEEEcCCC-CCeEEEEEcCCCCEEEEEe-C-----CeEEEEEcCCCC
Q 003271          687 RFQPRLGRILAAAIE-----NYISILDVETQVCRLKLQGHK-NQVHSVCWNTSGEYLASVS-D-----ELVRVWSIGSGS  754 (835)
Q Consensus       687 ~fsp~~~~ll~~s~d-----g~I~IwDl~t~~~i~~l~~h~-~~I~sl~fspdg~~Lasgs-D-----g~I~IwDl~t~~  754 (835)
                      +...++..++.++.+     ..+..+|..+........... ..-.+++.. ++.+++.++ +     ..+.+||..+. 
T Consensus        97 ~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~-  174 (288)
T d1zgka1          97 VGVIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERN-  174 (288)
T ss_dssp             EEEETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTT-
T ss_pred             ccccceeeEEecceecccccceeeeeccccCccccccccccccccceeeee-eecceEecCcccccccceEEEeecccc-
Confidence            222244444444433     235557777654432211111 111122222 334444443 2     36788887664 


Q ss_pred             CcceEEEeecC--CCceEEEEEeCCCCEEEEEEcCC-----eEEEEEcCCCcEEEeccCC-CCe-eEEEEeCCCCEEEEE
Q 003271          755 KGECIHELSCT--GNKFHSCVFHPTFPSLLVIGCYE-----TLELWNMTENKTLTLSAHD-KLV-SSLAASTVNGMVASA  825 (835)
Q Consensus       755 ~~~~i~~l~~~--~~~V~sv~fspdg~~L~sgs~dg-----~I~IwDl~~~~~~~l~~h~-~~V-~~la~spdg~~LaSg  825 (835)
                        . .......  .....+++.. .+..++.++.++     .+.+||..+.+...+.... ... .+++. .++++++.|
T Consensus       175 --~-~~~~~~~~~~~~~~~~~~~-~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~-~~~~l~v~G  249 (288)
T d1zgka1         175 --E-WRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLG  249 (288)
T ss_dssp             --E-EEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEC
T ss_pred             --c-cccccccccccccccccce-eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEE-ECCEEEEEe
Confidence              1 1111111  1111222222 344555555443     6788898888776543221 112 23333 367888888


Q ss_pred             ECCCc
Q 003271          826 SHDKC  830 (835)
Q Consensus       826 s~DG~  830 (835)
                      +.++.
T Consensus       250 G~~~~  254 (288)
T d1zgka1         250 GYDGH  254 (288)
T ss_dssp             CBCSS
T ss_pred             cCCCC
Confidence            76553

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=91.98  E-value=8.5  Score=40.23  Aligned_cols=54  Identities=20%  Similarity=0.250  Sum_probs=39.6

Q ss_pred             CCCEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEE--Eec------cCCCCeEEEEECCC
Q 003271          555 TSKVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKS--TLE------EHTQWITDVRFSPS  608 (835)
Q Consensus       555 ~~~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~--~l~------~h~~~V~sv~fspd  608 (835)
                      -..-++|+|.|||++|++--.+|+|++++..++....  .+.      .-......|+|+|+
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            3467899999999988877557999999887765432  221      12346789999995

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.66  E-value=2.2  Score=44.02  Aligned_cols=97  Identities=8%  Similarity=0.050  Sum_probs=69.7

Q ss_pred             CeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCCcEEEe
Q 003271          724 QVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTENKTLTL  803 (835)
Q Consensus       724 ~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~~~~~l  803 (835)
                      .|..++|+.+  .|++..++.+..++...-.   ...........+..+.+.|.  .+++...++.+.++++..++...+
T Consensus        88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~---~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~  160 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVSTRNALYSLDLEELS---EFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQL  160 (381)
T ss_dssp             TEEEEEEETT--EEEEEESSEEEEEESSSTT---CEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEE
T ss_pred             CeEEEEeeCC--EEEEEeCCCEEEEEeeccc---cccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccc
Confidence            5888999744  5777778889999987753   33333334566788888775  578888899999999998875422


Q ss_pred             c------cCCCCeeEEEEeCCCCEEEEEEC
Q 003271          804 S------AHDKLVSSLAASTVNGMVASASH  827 (835)
Q Consensus       804 ~------~h~~~V~~la~spdg~~LaSgs~  827 (835)
                      .      .-.+.+.+++|++.|+.++++..
T Consensus       161 ~~~v~~~~~~~~~~~v~ws~kgkq~v~~~g  190 (381)
T d1xipa_         161 AQNVTSFDVTNSQLAVLLKDRSFQSFAWRN  190 (381)
T ss_dssp             EESEEEEEECSSEEEEEETTSCEEEEEEET
T ss_pred             cCCcceEEecCCceEEEEeCCcEEEEEeCC
Confidence            1      12366889999988888888753

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=91.64  E-value=1.5  Score=42.71  Aligned_cols=216  Identities=11%  Similarity=0.001  Sum_probs=105.5

Q ss_pred             CCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeee
Q 003271          597 TQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCA  676 (835)
Q Consensus       597 ~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~  676 (835)
                      ...|..|+--.  .+.+.-. ||.|..|-...... +-.-......|..|+.-.  .+.++ - .|+.++.|.....-..
T Consensus        25 ~~~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQ-lG~~~~~~~~v~~v~~G~--~~~~a-l-~dg~v~~wG~~~~gq~   96 (273)
T d1jtdb_          25 QSGVDAIAGGY--FHGLALK-GGKVLGWGANLNGQ-LTMPAATQSGVDAIAAGN--YHSLA-L-KDGEVIAWGGNEDGQT   96 (273)
T ss_dssp             SSSEEEEEECS--SEEEEEE-TTEEEEEECCTTST-TSCCGGGGSCCCEEEECS--SEEEE-E-ETTEEEEEECCTTSTT
T ss_pred             CCCcEEEEccC--CEEEEEE-CCEEEEEeCCCCCc-eeeeecccccceEEecCC--Cceee-e-eeeeeeccCCCcceee
Confidence            44577777632  2333344 89999997665432 211122234455555422  22332 2 3899999987542211


Q ss_pred             ---eEeecCceEEEEecCCCEEEEEEcCCcEEEEECCCCeEEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCC
Q 003271          677 ---GVFKSGATQMRFQPRLGRILAAAIENYISILDVETQVCRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSG  753 (835)
Q Consensus       677 ---~~~~~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~  753 (835)
                         ......+..+....  ... +...|+.+..|.................|..++-  ....++...++.++.|-....
T Consensus        97 ~~~~~~~~~~~~i~~~~--~~~-~~~~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~--~~~~~~~~~~g~~~~~G~~~~  171 (273)
T d1jtdb_          97 TVPAEARSGVDAIAAGA--WAS-YALKDGKVIAWGDDSDGQTTVPAEAQSGVTALDG--GVYTALAVKNGGVIAWGDNYF  171 (273)
T ss_dssp             CCCGGGGSSCCEEEEET--TEE-EEEETTEEEEEECCTTSTTSCCGGGGSSEEEEEE--CSSEEEEEETTEEEEEECCTT
T ss_pred             ccccccccceeEEeeec--ccc-cccccccceecccCCCCceeeeccCCceEEEEec--cceeeeeecccceeEeecccC
Confidence               11112233443332  222 2335788888865432211111112234544443  233444455888999976543


Q ss_pred             CCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcCCC-cEEEeccCCCCeeEEEEeCCCCEEEEEECCCcEE
Q 003271          754 SKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMTEN-KTLTLSAHDKLVSSLAASTVNGMVASASHDKCVK  832 (835)
Q Consensus       754 ~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~~~-~~~~l~~h~~~V~~la~spdg~~LaSgs~DG~V~  832 (835)
                      ...   .........|..++....  +.++.. ||.|+.|=.... .+-........|..|+-.. ...++.  .||.|.
T Consensus       172 g~~---~~~~~~~~~v~~Is~G~~--h~~~l~-dG~v~~WG~n~~Gql~~~~~~~~~v~~I~~G~-~~~~~l--~~g~v~  242 (273)
T d1jtdb_         172 GQT---TVPAEAQSGVDDVAGGIF--HSLALK-DGKVIAWGDNRYKQTTVPTEALSGVSAIASGE-WYSLAL--KNGKVI  242 (273)
T ss_dssp             STT---SCCGGGSSSEEEEEECSS--EEEEEE-TTEEEEEECCTTSTTCCCGGGGSSCCEEEECS-SCEEEE--ETTEEE
T ss_pred             Ccc---cccccccCCccceeccce--eeEEEe-cCcEEEcCCCCCCccCCCccCCCCcEEEEeCc-ceEEEE--ECCEEE
Confidence            211   111122345666655433  333333 789999965332 2212222334577776543 333443  388999


Q ss_pred             Ee
Q 003271          833 IW  834 (835)
Q Consensus       833 IW  834 (835)
                      .|
T Consensus       243 ~W  244 (273)
T d1jtdb_         243 AW  244 (273)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.39  E-value=7.1  Score=36.47  Aligned_cols=214  Identities=9%  Similarity=0.036  Sum_probs=111.8

Q ss_pred             CCCEEEEEECCCeEEEEecCCCCceeEEeecCCCCeEEEEEc-CCCCcEEEEEe-----CCCcEEEEECCCCeeeeEee-
Q 003271          608 SLSRLATSSADRTVRVWDTENPDYSLRTFTGHSTTVMSLDFH-PSKEDLLCSCD-----NNSEIRYWSINNGSCAGVFK-  680 (835)
Q Consensus       608 dg~~Latgs~Dg~I~IWDl~t~~~~~~~~~~h~~~V~sl~fs-p~g~~ll~sgs-----~Dg~I~iwDl~s~~~~~~~~-  680 (835)
                      +.++|+++...|.|.++-+..++.  ..+.  ..+|.....- +.-..+++.-+     .-..|++.++...-....+. 
T Consensus        25 ~d~ll~~~~seG~vni~~l~g~~~--vkLt--kePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~s  100 (313)
T d2hu7a1          25 GDKLLVVGFSEGSVNAYLYDGGET--VKLN--REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA  100 (313)
T ss_dssp             TTEEEEEEEETTEEEEEEESSSSC--EECC--SSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTT
T ss_pred             CCcEEEEEeccceEEEEEEeCCEE--EEEe--cccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecC
Confidence            345788888899999998887664  2222  2333332211 11111221111     11234444443211111111 


Q ss_pred             -cCceEEEEec-CCCEEEEEEcCCcEEEEECCCCeEEEEEcC-CCCCeEEEEEcCCCCEEEEEe---CC--eEEEEEcCC
Q 003271          681 -SGATQMRFQP-RLGRILAAAIENYISILDVETQVCRLKLQG-HKNQVHSVCWNTSGEYLASVS---DE--LVRVWSIGS  752 (835)
Q Consensus       681 -~~i~~l~fsp-~~~~ll~~s~dg~I~IwDl~t~~~i~~l~~-h~~~I~sl~fspdg~~Lasgs---Dg--~I~IwDl~t  752 (835)
                       .++.-+.... +.+..++|+..+...+|-++.++......- .-+-|+.+    .+++++..+   .+  .+.+-|+.+
T Consensus       101 pk~vRI~S~~yddk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI----~~d~I~G~g~~~g~~~sfF~adl~S  176 (313)
T d2hu7a1         101 VKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDI----RGDLIAGLGFFGGGRVSLFTSNLSS  176 (313)
T ss_dssp             SCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEE----ETTEEEEEEEEETTEEEEEEEETTT
T ss_pred             CceEEEEEeeecCceEEEecccCCceEEEEEeCCceeeeccCCCcceEEec----cCCeEEEEeeecCCcceEEEEeccc
Confidence             1122333222 336677888889899998888765432211 11223322    355665444   22  233335544


Q ss_pred             CCCcceEEEeecCCCceEEEEEeCCCCEEEEEEc-CC--eEEEEEcCCCcEEEeccCC--------CCeeEEEEeCCCCE
Q 003271          753 GSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGC-YE--TLELWNMTENKTLTLSAHD--------KLVSSLAASTVNGM  821 (835)
Q Consensus       753 ~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~-dg--~I~IwDl~~~~~~~l~~h~--------~~V~~la~spdg~~  821 (835)
                      +    .+..+....+.++...+.+..+. ++.-. -+  ...-+|..+++...+.-.+        -.|+-+-+.|++++
T Consensus       177 G----~lri~tpkeGS~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L  251 (313)
T d2hu7a1         177 G----GLRVFDSGEGSFSSASISPGMKV-TAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPDGRL  251 (313)
T ss_dssp             E----EEEEECCSSEEEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTTSCE
T ss_pred             C----CEEEecCCCCcccceeEccCcee-eeccCCCCceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCCCcE
Confidence            3    34455555667777777777764 33222 12  2235588888776443222        23555668999999


Q ss_pred             EEEEECCCcEEEe
Q 003271          822 VASASHDKCVKIW  834 (835)
Q Consensus       822 LaSgs~DG~V~IW  834 (835)
                      ++.+-.||.-++|
T Consensus       252 ~iiakrdG~s~lF  264 (313)
T d2hu7a1         252 AVVARREGRSAVF  264 (313)
T ss_dssp             EEEEEETTEEEEE
T ss_pred             EEEEecCCchhee
Confidence            8999999987776

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.16  E-value=0.058  Score=42.42  Aligned_cols=33  Identities=21%  Similarity=0.334  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHHhcCChHHHHHHHHHhcCCCCC
Q 003271            9 DKMLDVYIYDYLLKRKLHASAKAFQTEGKVSTD   41 (835)
Q Consensus         9 ~~~L~~yiy~yl~k~~~~~~A~~~~~e~~~~~~   41 (835)
                      ++=||.-|++||..+|+.++|.+|.+|+.++.+
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~   39 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMN   39 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCC
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCC
Confidence            356999999999999999999999999988643

>d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: RCC1/BLIP-II
family: beta-lactamase inhibitor protein-II, BLIP-II
domain: beta-lactamase inhibitor protein-II, BLIP-II
species: Streptomyces exfoliatus [TaxId: 1905]

Probab=89.87  E-value=2.2  Score=41.43  Aligned_cols=217  Identities=10%  Similarity=-0.028  Sum_probs=100.5

Q ss_pred             CEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCeEEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEecCCCCceeEEe
Q 003271          557 KVESCHFSPDGKLLATGGHDKKAVLWCTESFTVKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWDTENPDYSLRTF  636 (835)
Q Consensus       557 ~V~sl~fSpdg~~Lasgs~Dg~I~VWd~~t~~~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWDl~t~~~~~~~~  636 (835)
                      .|..|+.-.  ...+.-. ||.|..|-....-.+-.-......|..|..-..  +.+.- .|+.+..|....... ....
T Consensus        27 ~i~~va~G~--~h~~al~-dG~v~~wG~N~~GQlG~~~~~~~~v~~v~~G~~--~~~al-~dg~v~~wG~~~~gq-~~~~   99 (273)
T d1jtdb_          27 GVDAIAGGY--FHGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGNY--HSLAL-KDGEVIAWGGNEDGQ-TTVP   99 (273)
T ss_dssp             SEEEEEECS--SEEEEEE-TTEEEEEECCTTSTTSCCGGGGSCCCEEEECSS--EEEEE-ETTEEEEEECCTTST-TCCC
T ss_pred             CcEEEEccC--CEEEEEE-CCEEEEEeCCCCCceeeeecccccceEEecCCC--ceeee-eeeeeeccCCCccee-eccc
Confidence            466666532  2333334 789999965543211111122334555554322  22222 489999998654322 1111


Q ss_pred             ecCCCCeEEEEEcCCCCcEEEEEeCCCcEEEEECCCCeeeeEee---cCceEEEEecCCCEEEEEEcCCcEEEEECCCCe
Q 003271          637 TGHSTTVMSLDFHPSKEDLLCSCDNNSEIRYWSINNGSCAGVFK---SGATQMRFQPRLGRILAAAIENYISILDVETQV  713 (835)
Q Consensus       637 ~~h~~~V~sl~fsp~g~~ll~sgs~Dg~I~iwDl~s~~~~~~~~---~~i~~l~fsp~~~~ll~~s~dg~I~IwDl~t~~  713 (835)
                      ......+..+.....   ..+.. .|+.+..|............   ..+..++-   +.+.++...++.++.|-.....
T Consensus       100 ~~~~~~~~~i~~~~~---~~~~~-~dg~v~~~g~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~~~~g~~~~~G~~~~g  172 (273)
T d1jtdb_         100 AEARSGVDAIAAGAW---ASYAL-KDGKVIAWGDDSDGQTTVPAEAQSGVTALDG---GVYTALAVKNGGVIAWGDNYFG  172 (273)
T ss_dssp             GGGGSSCCEEEEETT---EEEEE-ETTEEEEEECCTTSTTSCCGGGGSSEEEEEE---CSSEEEEEETTEEEEEECCTTS
T ss_pred             cccccceeEEeeecc---ccccc-ccccceecccCCCCceeeeccCCceEEEEec---cceeeeeecccceeEeecccCC
Confidence            112233444544322   22222 48899999755432221111   11222221   2233444557888888654322


Q ss_pred             EEEEEcCCCCCeEEEEEcCCCCEEEEEeCCeEEEEEcCCCCCcceEEEeecCCCceEEEEEeCCCCEEEEEEcCCeEEEE
Q 003271          714 CRLKLQGHKNQVHSVCWNTSGEYLASVSDELVRVWSIGSGSKGECIHELSCTGNKFHSCVFHPTFPSLLVIGCYETLELW  793 (835)
Q Consensus       714 ~i~~l~~h~~~I~sl~fspdg~~LasgsDg~I~IwDl~t~~~~~~i~~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~Iw  793 (835)
                      ...........|..|+....  +.+.-.||.|+.|=......  .-.. ......|..|+-.... .++ . .|+.|+.|
T Consensus       173 ~~~~~~~~~~~v~~Is~G~~--h~~~l~dG~v~~WG~n~~Gq--l~~~-~~~~~~v~~I~~G~~~-~~~-l-~~g~v~~W  244 (273)
T d1jtdb_         173 QTTVPAEAQSGVDDVAGGIF--HSLALKDGKVIAWGDNRYKQ--TTVP-TEALSGVSAIASGEWY-SLA-L-KNGKVIAW  244 (273)
T ss_dssp             TTSCCGGGSSSEEEEEECSS--EEEEEETTEEEEEECCTTST--TCCC-GGGGSSCCEEEECSSC-EEE-E-ETTEEEEE
T ss_pred             cccccccccCCccceeccce--eeEEEecCcEEEcCCCCCCc--cCCC-ccCCCCcEEEEeCcce-EEE-E-ECCEEEEE
Confidence            11111123456777765432  23333489999996543211  1000 1112345555543332 233 3 47899999


Q ss_pred             Ec
Q 003271          794 NM  795 (835)
Q Consensus       794 Dl  795 (835)
                      -.
T Consensus       245 G~  246 (273)
T d1jtdb_         245 GS  246 (273)
T ss_dssp             ST
T ss_pred             CC
Confidence            54

>d1wp5a_ b.68.10.1 (A:) Topoisomerase IV subunit A, ParC, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: GyrA/ParC C-terminal domain-like
family: GyrA/ParC C-terminal domain-like
domain: Topoisomerase IV subunit A, ParC, C-terminal domain
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=84.90  E-value=20  Score=35.42  Aligned_cols=230  Identities=7%  Similarity=0.041  Sum_probs=124.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCCe----EEEEeccCCCCeEEEEECCCCCEEEEEECCCeEEEEe---cCCCC-----ce
Q 003271          565 PDGKLLATGGHDKKAVLWCTESFT----VKSTLEEHTQWITDVRFSPSLSRLATSSADRTVRVWD---TENPD-----YS  632 (835)
Q Consensus       565 pdg~~Lasgs~Dg~I~VWd~~t~~----~i~~l~~h~~~V~sv~fspdg~~Latgs~Dg~I~IWD---l~t~~-----~~  632 (835)
                      ++...+++-+.+|.|+--++++.+    .-..++ -.+.+..+........|+.-+..|.++...   +....     .+
T Consensus         3 ~~E~v~v~lS~~GyiKR~~~~~~~~~~~~~~~~k-~~D~v~~~~~~~t~d~ll~fT~~Grvy~l~v~eiP~~~~~s~G~p   81 (323)
T d1wp5a_           3 ASEDVIVTVTKDGYVKRTSLRSYAASNGQDFAMK-DTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDLGQH   81 (323)
T ss_dssp             SCCEEEEEEETTCEEEEEEHHHHHHTTTCCCCCC-TTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSCCEE
T ss_pred             CCCCEEEEEeCCCeEEEeeHHHhhhcCCCCCccc-CCceEEEEEEEcCCCEEEEEecCCEEEEEeeccCccccccccccc
Confidence            567788888999999866543210    001122 233455544444444565556777665544   43221     11


Q ss_pred             eEEe--ecCCCCeEEEE-EcC-CCCcEEEEEeCCCcEEEEECCCCee------e--eEee--cCceEEEEecCCCEEEEE
Q 003271          633 LRTF--TGHSTTVMSLD-FHP-SKEDLLCSCDNNSEIRYWSINNGSC------A--GVFK--SGATQMRFQPRLGRILAA  698 (835)
Q Consensus       633 ~~~~--~~h~~~V~sl~-fsp-~g~~ll~sgs~Dg~I~iwDl~s~~~------~--~~~~--~~i~~l~fsp~~~~ll~~  698 (835)
                      +..+  ......|..+. ..+ .....++..+..|.++..++.....      .  ..+.  ..+..+.+......++.+
T Consensus        82 i~~ll~l~~~e~ii~~~~~~~~~~~~~l~~~Tk~G~iKr~~l~~f~~~~~~~g~~~i~L~~~D~l~~v~~~~~~~~i~l~  161 (323)
T d1wp5a_          82 IANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHLTDGMNELFLV  161 (323)
T ss_dssp             GGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEEECSCSEEEEE
T ss_pred             ceeeecccCCcceEEEeeccccccceeEEEEeehhheeeccHHHhhhhhccchhhhccccccccccceeccCCCeEEEEE
Confidence            1111  11233444433 332 1234566778899999988743221      1  1222  225566666677889999


Q ss_pred             EcCCcEEEEECCCCe---------EEEEEcCCCCCeE-EEEEcCCCCEEEEEe-CCeEEEEEcCCCC----CcceEE---
Q 003271          699 AIENYISILDVETQV---------CRLKLQGHKNQVH-SVCWNTSGEYLASVS-DELVRVWSIGSGS----KGECIH---  760 (835)
Q Consensus       699 s~dg~I~IwDl~t~~---------~i~~l~~h~~~I~-sl~fspdg~~Lasgs-Dg~I~IwDl~t~~----~~~~i~---  760 (835)
                      +..|.+..|+...-.         ....+. ....|. .+...+++..|+..+ .|..+...+..-.    ...-+.   
T Consensus       162 t~~G~~lrf~~~~vr~~gr~a~GV~~ikL~-~~D~vv~~~~~~~~~~~ll~~T~~G~gKr~~~~e~~~~~RggkGv~~~k  240 (323)
T d1wp5a_         162 THNGYALWFDESEVSIVGVRAAGVKGMNLK-EGDYIVSGQLITSKDESIVVATQRGAVKKMKLTEFEKATRAKRGVVILR  240 (323)
T ss_dssp             ETTSEEEEEEGGGSCBCCSSCCCEECCCCC-TTCCEEEEEEECCTTCEEEEEETTSEEEEEEGGGSCCCCTTSCCEECSC
T ss_pred             EecceeeEeecccccccCcccccccccccc-cccccchhhhccccccceeeeeeeheeecccchhhcccccccccccccc
Confidence            999999999875321         112232 233444 444556666777666 7877776654321    111122   


Q ss_pred             EeecCCCceEEEEEeCCCCEEEEEEcCCeEEEEEcC
Q 003271          761 ELSCTGNKFHSCVFHPTFPSLLVIGCYETLELWNMT  796 (835)
Q Consensus       761 ~l~~~~~~V~sv~fspdg~~L~sgs~dg~I~IwDl~  796 (835)
                      ........+..+....+...|+..+..|.+.-.++.
T Consensus       241 ~~k~~~~~v~~~~~~~~~d~l~l~T~~g~~~r~~~~  276 (323)
T d1wp5a_         241 ELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVG  276 (323)
T ss_dssp             CCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGG
T ss_pred             ccccccceeeeeEecCCCCEEEEEeCCCEEEEEEhh
Confidence            222233456666666666778888888876666554